Citrus Sinensis ID: 041845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQEVEHDK
Secondary Structure (PSIPRED)
cccccccccccEEEEEccccEEEEEEEEcccccHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccEEcccccccccccccccEEcccccccccccEEEcccccccccccccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEccccEEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHEccccccHHHHHHHHHHHcHHHHHcccccccccEEEEcEEcHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
LSNLRHRHLVSLIGHHVENKEMILVYDCMArgtlrdhlynnhkpplqWMWRLKICIGAarglhylhtgtrntiihrdvkstnilldenwvakHSRERQLRLLGsrilpaklteksdvysfgvlcarpamlpmaeneqevehdk
Flexible Loop (DISEMBL)
lsnlrhrhLVSLighhvenkeMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHtgtrntiihrdVKSTNILLDENWVAKHSRERQLRLlgsrilpaklteksdvySFGVLCARPAMlpmaeneqevehdk
Low Complexity Region (SEG)
LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQEVEHDK
Disordered region (IsUnstruct)
******RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPA***************
Disordered Region (DISOPRED)
LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLP************
Disordered Region (DISEMBL)
LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMA**********
Disordered Region (DISPRO)
*SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQEVEHDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9SCZ4	895	Receptor-like protein kin	yes	no	0.951	0.151	0.576	1e-42
Q9SR05	850	Receptor-like protein kin	no	no	0.958	0.161	0.561	7e-41
Q3E8W4	858	Receptor-like protein kin	no	no	0.958	0.159	0.549	1e-40
Q9LK35	855	Receptor-like protein kin	no	no	0.958	0.160	0.549	5e-39
Q9SJT0	871	Probable receptor-like pr	no	no	0.958	0.157	0.546	1e-38
Q9T020	878	Probable receptor-like pr	no	no	0.958	0.156	0.540	2e-38
Q9FLW0	824	Probable receptor-like pr	no	no	0.958	0.166	0.512	1e-37
Q9FLJ8	842	Probable receptor-like pr	no	no	0.958	0.162	0.532	5e-37
Q9SA72	849	Probable receptor-like pr	no	no	0.958	0.161	0.524	7e-37
O80623	815	Probable receptor-like pr	no	no	0.958	0.168	0.496	8e-36

>sp|Q9SCZ4|FERON_ARATH Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1

 Score =  171 bits (433), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 106/163 (65%), Gaps = 27/163 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  EN EMILVYD MA GT+R+HLY    P L W  RL+ICIGAAR
Sbjct: 585 LSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTMREHLYKTQNPSLPWKQRLEICIGAAR 644

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------SRILPA--- 109
           GLHYLHTG ++TIIHRDVK+TNILLDE WVAK S +  L   G        S ++     
Sbjct: 645 GLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVS-DFGLSKTGPTLDHTHVSTVVKGSFG 703

Query: 110 ----------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                     +LTEKSDVYSFGV     LCARPA+ P    EQ
Sbjct: 704 YLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPTLAKEQ 746

Receptor-like protein kinase that mediates the female control of male gamete delivery during fertilization, including growth cessation of compatible pollen tubes ensuring a reproductive isolation barriers. Required for cell elongation during vegetative growth, mostly in a brassinosteroids- (BR-) independent manner.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SR05|ANX1_ARATH Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1

 Score =  165 bits (418), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 91/162 (56%), Positives = 103/162 (63%), Gaps = 25/162 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRH+HLVSLIG+  E  EM LVYD MA GTLR+HLYN  KP L W  RL+I IGAAR
Sbjct: 565 LSRLRHKHLVSLIGYCDEGGEMCLVYDYMAFGTLREHLYNTKKPQLTWKRRLEIAIGAAR 624

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS----RERQLRLLGSRILPA------- 109
           GLHYLHTG + TIIHRDVK+TNIL+DENWVAK S     +    + G  +          
Sbjct: 625 GLHYLHTGAKYTIIHRDVKTTNILVDENWVAKVSDFGLSKTGPNMNGGHVTTVVKGSFGY 684

Query: 110 ---------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                    +LTEKSDVYSFGV     LCARPA+ P    EQ
Sbjct: 685 LDPEYFRRQQLTEKSDVYSFGVVLFEILCARPALNPSLPKEQ 726

Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q3E8W4|ANX2_ARATH Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1

 Score =  164 bits (416), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/162 (54%), Positives = 103/162 (63%), Gaps = 25/162 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRH+HLVSLIG+  E  EM L+YD M+ GTLR+HLYN  +P L W  RL+I IGAAR
Sbjct: 569 LSRLRHKHLVSLIGYCDEGGEMCLIYDYMSLGTLREHLYNTKRPQLTWKRRLEIAIGAAR 628

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS----RERQLRLLGSRILPA------- 109
           GLHYLHTG + TIIHRDVK+TNILLDENWVAK S     +    + G  +          
Sbjct: 629 GLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNGGHVTTVVKGSFGY 688

Query: 110 ---------KLTEKSDVYSFG-----VLCARPAMLPMAENEQ 137
                    +LTEKSDVYSFG     VLCARPA+ P    EQ
Sbjct: 689 LDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLSKEQ 730

Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LK35|THE1_ARATH Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 89/162 (54%), Positives = 101/162 (62%), Gaps = 25/162 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  E  EMILVY+ MA G LR HLY    PPL W  RL+ICIGAAR
Sbjct: 558 LSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGADLPPLSWKQRLEICIGAAR 617

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS----RERQLRLLGSRILPA------- 109
           GLHYLHTG   +IIHRDVK+TNILLDEN VAK +     +    L  + +  A       
Sbjct: 618 GLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQTHVSTAVKGSFGY 677

Query: 110 ---------KLTEKSDVYSFG-----VLCARPAMLPMAENEQ 137
                    +LTEKSDVYSFG     VLC RPA+ P+   EQ
Sbjct: 678 LDPEYFRRQQLTEKSDVYSFGVVLMEVLCCRPALNPVLPREQ 719

Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner. Mediates the response of growing plant cells to the perturbation of cellulose synthesis and may act as a cell-wall-integrity sensor. Controls ectopic-lignin accumulation in cellulose-deficient mutant backgrounds.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SJT0|Y2214_ARATH Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=3 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/161 (54%), Positives = 101/161 (62%), Gaps = 24/161 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  EN EMILVY+ M+ G  RDHLY  +  PL W  RL+ICIGAAR
Sbjct: 573 LSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDHLYGKNLSPLTWKQRLEICIGAAR 632

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---ERQLRLLGSRILPA-------- 109
           GLHYLHTGT   IIHRDVKSTNILLDE  VAK +     + +    + +  A        
Sbjct: 633 GLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVSTAVKGSFGYL 692

Query: 110 --------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                   +LT+KSDVYSFGV     LCARPA+ P    EQ
Sbjct: 693 DPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQ 733

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9T020|Y4391_ARATH Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/161 (54%), Positives = 101/161 (62%), Gaps = 24/161 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  EN EMILVY+ M+ G  RDHLY  +  PL W  RL+ICIG+AR
Sbjct: 574 LSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKNLAPLTWKQRLEICIGSAR 633

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---ERQLRLLGSRILPA-------- 109
           GLHYLHTGT   IIHRDVKSTNILLDE  VAK +     + +    + +  A        
Sbjct: 634 GLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVSTAVKGSFGYL 693

Query: 110 --------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                   +LT+KSDVYSFGV     LCARPA+ P    EQ
Sbjct: 694 DPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQ 734

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FLW0|Y5241_ARATH Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1

 Score =  155 bits (391), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/162 (51%), Positives = 100/162 (61%), Gaps = 25/162 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS +RHRHLVSL+G+  E  EMILVY+ M +G L+ HLY +  PPL W  RL++CIGAAR
Sbjct: 537 LSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGSTNPPLSWKQRLEVCIGAAR 596

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR-------------------- 100
           GLHYLHTG+   IIHRD+KSTNILLD N+VAK +     R                    
Sbjct: 597 GLHYLHTGSSQGIIHRDIKSTNILLDNNYVAKVADFGLSRSGPCIDETHVSTGVKGSFGY 656

Query: 101 LLGSRILPAKLTEKSDVYSFG-----VLCARPAMLPMAENEQ 137
           L        +LT+KSDVYSFG     VLCARPA+ P+   EQ
Sbjct: 657 LDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLVREQ 698

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9FLJ8|Y5613_ARATH Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1

 Score =  152 bits (385), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 89/167 (53%), Positives = 100/167 (59%), Gaps = 30/167 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN------NHKPPLQWMWRLKI 54
           LS LRHRHLVSLIG   ENKEMILVY+ M+ G LRDHLY       N  P L W  RL+I
Sbjct: 573 LSKLRHRHLVSLIGFCDENKEMILVYEYMSNGPLRDHLYGSKENDPNPIPTLSWKQRLEI 632

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---ERQLRLLGSRILPA-- 109
           CIG+ARGLHYLHTG    IIHRDVK+TNILLDEN VAK S     +   +    +  A  
Sbjct: 633 CIGSARGLHYLHTGAAQGIIHRDVKTTNILLDENLVAKVSDFGLSKDAPMDEGHVSTAVK 692

Query: 110 --------------KLTEKSDVYSFG-----VLCARPAMLPMAENEQ 137
                         +LT+KSDVYSFG     VLCARP + P    EQ
Sbjct: 693 GSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVINPQLPREQ 739

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SA72|Y1357_ARATH Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1

 Score =  152 bits (384), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 85/162 (52%), Positives = 100/162 (61%), Gaps = 25/162 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG   E+ EMILVY+ MA GTLR HL+ ++ PPL W  RL+ CIG+AR
Sbjct: 568 LSRLRHRHLVSLIGFCDEHNEMILVYEYMANGTLRSHLFGSNLPPLSWKQRLEACIGSAR 627

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS-------------RERQLRLLGS--- 104
           GLHYLHTG+   IIHRDVK+TNILLDEN+VAK S                   + GS   
Sbjct: 628 GLHYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGLSKAGPSMDHTHVSTAVKGSFGY 687

Query: 105 ----RILPAKLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                    +LTEKSDVYSFGV     +CAR  + P    +Q
Sbjct: 688 LDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQ 729

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O80623|Y2393_ARATH Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1

 Score =  148 bits (374), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/163 (49%), Positives = 101/163 (61%), Gaps = 26/163 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           L+  RHRHLVSLIG+  EN EMI+VY+ M +GTL+DHLY+ + KP L W  RL+IC+GAA
Sbjct: 535 LTQFRHRHLVSLIGYCDENSEMIIVYEYMEKGTLKDHLYDLDDKPRLSWRQRLEICVGAA 594

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-------------HSRERQLRLLGS-- 104
           RGLHYLHTG+   IIHRDVKS NILLD+N++AK                     + GS  
Sbjct: 595 RGLHYLHTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSKTGPDLDQTHVSTAVKGSFG 654

Query: 105 -----RILPAKLTEKSDVYSFG-----VLCARPAMLPMAENEQ 137
                 +   +LTEKSDVYSFG     V+C RP + P    E+
Sbjct: 655 YLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREK 697

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
351727140	883	receptor-like kinase [Glycine max] gi|22	0.951	0.154	0.595	1e-43
224122108	834	predicted protein [Populus trichocarpa]	0.923	0.158	0.586	1e-43
224122104	834	predicted protein [Populus trichocarpa]	0.923	0.158	0.586	1e-43
356551038	894	PREDICTED: receptor-like protein kinase	0.916	0.146	0.579	3e-43
351724969	708	FERONIA receptor-like kinase [Glycine ma	0.916	0.185	0.579	3e-43
449449849	897	PREDICTED: receptor-like protein kinase	0.951	0.151	0.595	3e-43
224139388	834	predicted protein [Populus trichocarpa]	0.951	0.163	0.595	6e-43
255554583	789	kinase, putative [Ricinus communis] gi|2	1.0	0.181	0.571	1e-42
163717541	447	FERONIA receptor-like kinase [Citrus tri	0.951	0.304	0.595	2e-42
224087891	893	predicted protein [Populus trichocarpa]	0.951	0.152	0.595	2e-42

>gi|351727140|ref|NP_001238686.1| receptor-like kinase [Glycine max] gi|223452309|gb|ACM89482.1| receptor-like kinase [Glycine max]

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 109/163 (66%), Gaps = 27/163 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  EN EMILVYDCMA GTLR+HLY   KPP  W  RL+ICIGAAR
Sbjct: 577 LSKLRHRHLVSLIGYCEENTEMILVYDCMAYGTLREHLYKTQKPPRPWKQRLEICIGAAR 636

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------SRILPA--- 109
           GLHYLHTG ++TIIHRDVK+TNILLDENWVAK S +  L   G        S ++     
Sbjct: 637 GLHYLHTGAKHTIIHRDVKTTNILLDENWVAKVS-DFGLSKTGPTLDNTHVSTVVKGSFG 695

Query: 110 ----------KLTEKSDVYSFG-----VLCARPAMLPMAENEQ 137
                     +LT+KSDVYSFG     VLCARPA+ P    EQ
Sbjct: 696 YLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLAKEQ 738

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122108|ref|XP_002330543.1| predicted protein [Populus trichocarpa] gi|222872101|gb|EEF09232.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/162 (58%), Positives = 110/162 (67%), Gaps = 30/162 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRH HLVSL+G+ +E KEM+LVY+ MA+GTLRDHLY   KPPLQW  R++ICIGAAR
Sbjct: 542 LSRLRHSHLVSLVGYCMEEKEMVLVYEYMAQGTLRDHLYKTQKPPLQWKQRIRICIGAAR 601

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG-----------SRILPA 109
           GLHYLHTG ++TIIHRD+KSTNILLDE WV K S +  L  LG           S I+  
Sbjct: 602 GLHYLHTGAKHTIIHRDIKSTNILLDEKWVPKVS-DFGLSKLGPNNMTESKTHVSTIVKG 660

Query: 110 -------------KLTEKSDVYSFG-----VLCARPAMLPMA 133
                        KLTEKSDVYSFG     VLCARPA++PM 
Sbjct: 661 SFGYLDPEYYRRQKLTEKSDVYSFGVVLFEVLCARPAVIPMG 702

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122104|ref|XP_002330542.1| predicted protein [Populus trichocarpa] gi|222872100|gb|EEF09231.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/162 (58%), Positives = 110/162 (67%), Gaps = 30/162 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRH HLVSL+G+ +E KEM+LVY+ MA+GTLRDHLY   KPPLQW  R++ICIGAAR
Sbjct: 542 LSRLRHSHLVSLVGYCMEEKEMVLVYEYMAQGTLRDHLYKTQKPPLQWKQRIRICIGAAR 601

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG-----------SRILPA 109
           GLHYLHTG ++TIIHRD+KSTNILLDE WV K S +  L  LG           S I+  
Sbjct: 602 GLHYLHTGAKHTIIHRDIKSTNILLDEKWVPKVS-DFGLSKLGPNNMTESKTHVSTIVKG 660

Query: 110 -------------KLTEKSDVYSFG-----VLCARPAMLPMA 133
                        KLTEKSDVYSFG     VLCARPA++PM 
Sbjct: 661 SFGYLNPEYYRRQKLTEKSDVYSFGVVLFEVLCARPAVIPMG 702

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551038|ref|XP_003543886.1| PREDICTED: receptor-like protein kinase FERONIA-like [Glycine max]

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 108/169 (63%), Gaps = 38/169 (22%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRH HLVSLIG+  EN EMILVYD MARGTLRDHLYN   PPL W  RL+ICIGAAR
Sbjct: 582 LSQLRHLHLVSLIGYCNENNEMILVYDFMARGTLRDHLYNTDNPPLTWKQRLQICIGAAR 641

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG-SRILPA---------- 109
           GLHYLHTG ++TIIHRDVK+TNILLD+ WVAK S        G SRI P           
Sbjct: 642 GLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSD------FGLSRIGPTGNAKAHVSTV 695

Query: 110 ----------------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                           +LTEKSDVYSFGV     LCARP ++  AE +Q
Sbjct: 696 VKGSIGYLDPEYYKRQRLTEKSDVYSFGVVLFELLCARPPLIRTAEKKQ 744

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724969|ref|NP_001237588.1| FERONIA receptor-like kinase [Glycine max] gi|223452286|gb|ACM89471.1| FERONIA receptor-like kinase [Glycine max]

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 108/169 (63%), Gaps = 38/169 (22%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRH HLVSLIG+  EN EMILVYD MARGTLRDHLYN   PPL W  RL+ICIGAAR
Sbjct: 396 LSQLRHLHLVSLIGYCNENNEMILVYDFMARGTLRDHLYNTDNPPLTWKQRLQICIGAAR 455

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG-SRILPA---------- 109
           GLHYLHTG ++TIIHRDVK+TNILLD+ WVAK S        G SRI P           
Sbjct: 456 GLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSD------FGLSRIGPTGNAKAHVSTV 509

Query: 110 ----------------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                           +LTEKSDVYSFGV     LCARP ++  AE +Q
Sbjct: 510 VKGSIGYLDPEYYKRQRLTEKSDVYSFGVVLFELLCARPPLIRTAEKKQ 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449849|ref|XP_004142677.1| PREDICTED: receptor-like protein kinase FERONIA-like [Cucumis sativus] gi|449502659|ref|XP_004161706.1| PREDICTED: receptor-like protein kinase FERONIA-like [Cucumis sativus]

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 109/163 (66%), Gaps = 27/163 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  EN EMILVYD MA GTLR+HLY  HKPPL W  RL+ICIGAAR
Sbjct: 588 LSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTHKPPLSWRQRLEICIGAAR 647

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------SRILPA--- 109
           GLHYLHTG ++TIIHRDVK+TNILLDE WVAK S +  L   G        S ++     
Sbjct: 648 GLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVS-DFGLSKTGPTLDHTHVSTVVKGSFG 706

Query: 110 ----------KLTEKSDVYSFG-----VLCARPAMLPMAENEQ 137
                     +LT+KSDVYSFG     VLCARPA+ P    EQ
Sbjct: 707 YLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQ 749

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139388|ref|XP_002323088.1| predicted protein [Populus trichocarpa] gi|222867718|gb|EEF04849.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 108/163 (66%), Gaps = 27/163 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  EN EMILVYD MA GTLR+HLY   KPPL W  RL+ICIGAAR
Sbjct: 526 LSKLRHRHLVSLIGYCEENTEMILVYDYMAHGTLREHLYKTQKPPLPWKQRLEICIGAAR 585

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------SRILPA--- 109
           GLHYLHTG ++TIIHRDVK+TNILLDE WVAK S +  L   G        S ++     
Sbjct: 586 GLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVS-DFGLSKTGPTLDHTHVSTVVKGSFG 644

Query: 110 ----------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                     +LTEKSDVYSFGV     LCARPA+ P    EQ
Sbjct: 645 YLDPEYFRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQ 687

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554583|ref|XP_002518330.1| kinase, putative [Ricinus communis] gi|223542550|gb|EEF44090.1| kinase, putative [Ricinus communis]

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 96/168 (57%), Positives = 113/168 (67%), Gaps = 25/168 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRH H+VSLIG+ + +KEMILVY+ MA+GTLRDHLY  HKPPL W  RLKIC+GAAR
Sbjct: 499 LSKLRHCHVVSLIGYSMNDKEMILVYNYMAQGTLRDHLYKAHKPPLPWKQRLKICLGAAR 558

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-------HSRERQLRLLGSRILPA---- 109
           GLHYLHTG +NTIIHRD+KSTNILLDE  VAK        S  RQ     S I+      
Sbjct: 559 GLHYLHTGAKNTIIHRDIKSTNILLDEKLVAKVSDFGLSTSALRQSNTHVSTIVKGTLGY 618

Query: 110 ---------KLTEKSDVYSFGVL-----CARPAMLPMAENEQEVEHDK 143
                    KLT KSDVYSFGV+     CARPA++ M + E+E  ++K
Sbjct: 619 LDPEYYRRQKLTAKSDVYSFGVVLFESQCARPAVMAMRDIEEEEYYEK 666

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163717541|gb|ABY40731.1| FERONIA receptor-like kinase [Citrus trifoliata]

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 108/163 (66%), Gaps = 27/163 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  EN EMILVYD MA GTLR+HLY   KPPL W  RL+ICIGAAR
Sbjct: 137 LSKLRHRHLVSLIGYCEENCEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGAAR 196

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------SRILPA--- 109
           GLHYLHTG ++TIIHRDVK+TNILLDE WVAK S +  L   G        S ++     
Sbjct: 197 GLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVS-DFGLSKTGPTLDHTHVSTVVKGSFG 255

Query: 110 ----------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                     +LTEKSDVYSFGV     LCARPA+ P    EQ
Sbjct: 256 YLDPEYFRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQ 298

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087891|ref|XP_002308259.1| predicted protein [Populus trichocarpa] gi|222854235|gb|EEE91782.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 107/163 (65%), Gaps = 27/163 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS LRHRHLVSLIG+  EN EMILVYD MA GTLR+HLY   KPPL W  RL+ICIGAAR
Sbjct: 585 LSKLRHRHLVSLIGYCEENTEMILVYDHMAYGTLREHLYKTQKPPLPWKQRLEICIGAAR 644

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------SRILPA--- 109
           GLHYLHTG + TIIHRDVK+TNILLDE WVAK S +  L   G        S ++     
Sbjct: 645 GLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVS-DFGLSKTGPTLDHTHVSTVVKGSFG 703

Query: 110 ----------KLTEKSDVYSFGV-----LCARPAMLPMAENEQ 137
                     +LTEKSDVYSFGV     LCARPA+ P    EQ
Sbjct: 704 YLDPEYFRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQ 746

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2081895	895	FER "FERONIA" [Arabidopsis tha	0.657	0.105	0.744	3.5e-39
TAIR|locus:2084953	850	ANX1 "ANXUR1" [Arabidopsis tha	0.657	0.110	0.734	1.1e-37
TAIR|locus:2148830	858	ANX2 "ANXUR2" [Arabidopsis tha	0.657	0.109	0.712	2e-37
TAIR|locus:2151349	855	THE1 "THESEUS1" [Arabidopsis t	0.643	0.107	0.728	2.9e-36
TAIR|locus:2050080	871	AT2G21480 [Arabidopsis thalian	0.643	0.105	0.728	1.1e-35
TAIR|locus:2178707	824	AT5G24010 [Arabidopsis thalian	0.643	0.111	0.663	1.8e-35
TAIR|locus:2136338	878	AT4G39110 [Arabidopsis thalian	0.643	0.104	0.717	1.8e-35
TAIR|locus:2204564	849	HERK2 "hercules receptor kinas	0.657	0.110	0.702	1.3e-34
TAIR|locus:2163158	842	AT5G61350 [Arabidopsis thalian	0.657	0.111	0.68	3.8e-34
TAIR|locus:2039717	815	AT2G39360 [Arabidopsis thalian	0.643	0.112	0.666	1.1e-33

TAIR|locus:2081895 FER "FERONIA" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 3.5e-39, Sum P(2) = 3.5e-39
 Identities = 70/94 (74%), Positives = 77/94 (81%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
             LS LRHRHLVSLIG+  EN EMILVYD MA GT+R+HLY    P L W  RL+ICIGAAR
Sbjct:   585 LSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTMREHLYKTQNPSLPWKQRLEICIGAAR 644

Query:    61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS 94
             GLHYLHTG ++TIIHRDVK+TNILLDE WVAK S
Sbjct:   645 GLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVS 678

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0010483 "pollen tube reception" evidence=IMP

GO:0043680 "filiform apparatus" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010193 "response to ozone" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2084953 ANX1 "ANXUR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 69/94 (73%), Positives = 76/94 (80%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
             LS LRH+HLVSLIG+  E  EM LVYD MA GTLR+HLYN  KP L W  RL+I IGAAR
Sbjct:   565 LSRLRHKHLVSLIGYCDEGGEMCLVYDYMAFGTLREHLYNTKKPQLTWKRRLEIAIGAAR 624

Query:    61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS 94
             GLHYLHTG + TIIHRDVK+TNIL+DENWVAK S
Sbjct:   625 GLHYLHTGAKYTIIHRDVKTTNILVDENWVAKVS 658

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2148830 ANX2 "ANXUR2" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
 Identities = 67/94 (71%), Positives = 76/94 (80%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
             LS LRH+HLVSLIG+  E  EM L+YD M+ GTLR+HLYN  +P L W  RL+I IGAAR
Sbjct:   569 LSRLRHKHLVSLIGYCDEGGEMCLIYDYMSLGTLREHLYNTKRPQLTWKRRLEIAIGAAR 628

Query:    61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS 94
             GLHYLHTG + TIIHRDVK+TNILLDENWVAK S
Sbjct:   629 GLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVS 662

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009860 "pollen tube growth" evidence=IGI

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2151349 THE1 "THESEUS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
 Identities = 67/92 (72%), Positives = 72/92 (78%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
             LS LRHRHLVSLIG+  E  EMILVY+ MA G LR HLY    PPL W  RL+ICIGAAR
Sbjct:   558 LSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGADLPPLSWKQRLEICIGAAR 617

Query:    61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
             GLHYLHTG   +IIHRDVK+TNILLDEN VAK
Sbjct:   618 GLHYLHTGASQSIIHRDVKTTNILLDENLVAK 649

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009791 "post-embryonic development" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=IGI;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2050080 AT2G21480 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 67/92 (72%), Positives = 72/92 (78%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
             LS LRHRHLVSLIG+  EN EMILVY+ M+ G  RDHLY  +  PL W  RL+ICIGAAR
Sbjct:   573 LSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDHLYGKNLSPLTWKQRLEICIGAAR 632

Query:    61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
             GLHYLHTGT   IIHRDVKSTNILLDE  VAK
Sbjct:   633 GLHYLHTGTAQGIIHRDVKSTNILLDEALVAK 664

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2178707 AT5G24010 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 61/92 (66%), Positives = 73/92 (79%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
             LS +RHRHLVSL+G+  E  EMILVY+ M +G L+ HLY +  PPL W  RL++CIGAAR
Sbjct:   537 LSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGSTNPPLSWKQRLEVCIGAAR 596

Query:    61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
             GLHYLHTG+   IIHRD+KSTNILLD N+VAK
Sbjct:   597 GLHYLHTGSSQGIIHRDIKSTNILLDNNYVAK 628

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2136338 AT4G39110 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 66/92 (71%), Positives = 72/92 (78%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
             LS LRHRHLVSLIG+  EN EMILVY+ M+ G  RDHLY  +  PL W  RL+ICIG+AR
Sbjct:   574 LSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKNLAPLTWKQRLEICIGSAR 633

Query:    61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
             GLHYLHTGT   IIHRDVKSTNILLDE  VAK
Sbjct:   634 GLHYLHTGTAQGIIHRDVKSTNILLDEALVAK 665

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2204564 HERK2 "hercules receptor kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 66/94 (70%), Positives = 76/94 (80%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
             LS LRHRHLVSLIG   E+ EMILVY+ MA GTLR HL+ ++ PPL W  RL+ CIG+AR
Sbjct:   568 LSRLRHRHLVSLIGFCDEHNEMILVYEYMANGTLRSHLFGSNLPPLSWKQRLEACIGSAR 627

Query:    61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS 94
             GLHYLHTG+   IIHRDVK+TNILLDEN+VAK S
Sbjct:   628 GLHYLHTGSERGIIHRDVKTTNILLDENFVAKMS 661

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2163158 AT5G61350 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
 Identities = 68/100 (68%), Positives = 75/100 (75%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK------PPLQWMWRLKI 54
             LS LRHRHLVSLIG   ENKEMILVY+ M+ G LRDHLY + +      P L W  RL+I
Sbjct:   573 LSKLRHRHLVSLIGFCDENKEMILVYEYMSNGPLRDHLYGSKENDPNPIPTLSWKQRLEI 632

Query:    55 CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS 94
             CIG+ARGLHYLHTG    IIHRDVK+TNILLDEN VAK S
Sbjct:   633 CIGSARGLHYLHTGAAQGIIHRDVKTTNILLDENLVAKVS 672

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2039717 AT2G39360 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 62/93 (66%), Positives = 76/93 (81%)

Query:     1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
             L+  RHRHLVSLIG+  EN EMI+VY+ M +GTL+DHLY+ + KP L W  RL+IC+GAA
Sbjct:   535 LTQFRHRHLVSLIGYCDENSEMIIVYEYMEKGTLKDHLYDLDDKPRLSWRQRLEICVGAA 594

Query:    60 RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
             RGLHYLHTG+   IIHRDVKS NILLD+N++AK
Sbjct:   595 RGLHYLHTGSTRAIIHRDVKSANILLDDNFMAK 627

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0140004601 hypothetical protein (834 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-24
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-24
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	8e-24
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-20
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	6e-20
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	5e-19
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-15
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-14
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-13
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-12
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-11
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-11
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-11
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-11
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-10
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	2e-10
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	6e-10
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	7e-10
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-09
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	8e-09
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-08
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-08
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-08
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-08
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	3e-08
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	5e-08
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-07
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-07
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-07
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-07
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-07
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	2e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	4e-07
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	4e-07
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-07
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	4e-07
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	5e-07
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	5e-07
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	6e-07
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-07
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-06
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	1e-06
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-06
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	1e-06
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-06
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-06
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-06
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-06
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-06
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	2e-06
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-06
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	3e-06
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-06
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-06
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	4e-06
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	4e-06
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	4e-06
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	4e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	5e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	6e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	6e-06
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	6e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	6e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	6e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	7e-06
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	7e-06
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	8e-06
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	9e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	9e-06
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	1e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-05
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	2e-05
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	2e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-05
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	2e-05
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-05
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	3e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-05
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	4e-05
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	5e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	5e-05
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	5e-05
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	5e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	6e-05
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	6e-05
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	7e-05
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	8e-05
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	8e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	8e-05
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	8e-05
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	9e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	9e-05
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	1e-04
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	1e-04
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-04
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	2e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	2e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	2e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	2e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	3e-04
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	3e-04
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	3e-04
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	3e-04
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	3e-04
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	3e-04
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	4e-04
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	4e-04
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	5e-04
cd08226	328	cd08226, PK_STRAD_beta, Pseudokinase domain of STE	6e-04
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	6e-04
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	6e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	7e-04
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	7e-04
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	7e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	8e-04
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	9e-04
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.001
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	0.001
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.001
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	0.001
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.001
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	0.001
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	0.002
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	0.002
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	0.002
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.002
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	0.002
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	0.002
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.002
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.002
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.002
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	0.002
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	0.003
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	0.003
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	0.003
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.003
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.003
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	0.003
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	0.003
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	0.003
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.004
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	0.004
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.004
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	0.004
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	0.004
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.004

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 93.8 bits (234), Expect = 3e-24
 Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 30/151 (19%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNNHKPPLQWMWRLK 53
           +  L H ++V L+G   E + + LV + M  G L D+L        +  K  L     L 
Sbjct: 50  MKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLS 109

Query: 54  ICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGS 104
             I  A+G+ YL        +HRD+ + N L+ E+ V K            +   R    
Sbjct: 110 FAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTG 166

Query: 105 RILPAK-----------LTEKSDVYSFGVLC 124
             LP +            T KSDV+SFGVL 
Sbjct: 167 GKLPIRWMAPESLKDGIFTSKSDVWSFGVLL 197

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 91.5 bits (228), Expect = 7e-24
 Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 24/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L H ++V L G   +   + LV +    G+L+D L  N    L     L+I +    
Sbjct: 45  LKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEG-KLSEDEILRILLQILE 103

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN---------WVAKHSRERQLRLLGSRILPA-- 109
           GL YLH    N IIHRD+K  NILLD +          ++K     +  L      PA  
Sbjct: 104 GLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYM 160

Query: 110 ---------KLTEKSDVYSFGVL 123
                      +EKSD++S GV+
Sbjct: 161 APEVLLGKGYYSEKSDIWSLGVI 183

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 92.2 bits (230), Expect = 8e-24
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 24/144 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H ++V L+G   + + + +V + M  G L D L   H   L     L++ +  A+
Sbjct: 55  MKKLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLR-KHGEKLTLKDLLQMALQIAK 113

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSRILP--- 108
           G+ YL        +HRD+ + N L+ EN V K            +   R  G   LP   
Sbjct: 114 GMEYLE---SKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKW 170

Query: 109 --------AKLTEKSDVYSFGVLC 124
                    K T KSDV+SFGVL 
Sbjct: 171 MAPESLKDGKFTSKSDVWSFGVLL 194

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 83.0 bits (206), Expect = 3e-20
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 24/144 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H ++V L+G   E + +++V + M  G L D+L  N    L     L   +  AR
Sbjct: 55  MRKLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIAR 114

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSRILP--- 108
           G+ YL        IHRD+ + N L+ EN V K            +   ++ G + LP   
Sbjct: 115 GMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGK-LPIRW 170

Query: 109 --------AKLTEKSDVYSFGVLC 124
                    K T KSDV+SFGVL 
Sbjct: 171 MAPESLKEGKFTSKSDVWSFGVLL 194

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 82.2 bits (204), Expect = 6e-20
 Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 25/144 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H ++V L+G   E + + +V + M  G L  +L   ++P L     L   +  AR
Sbjct: 55  MRKLDHPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYL-RKNRPKLSLSDLLSFALQIAR 113

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSRILP--- 108
           G+ YL        IHRD+ + N L+ EN V K            +   R  G + LP   
Sbjct: 114 GMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGK-LPIRW 169

Query: 109 --------AKLTEKSDVYSFGVLC 124
                    K T KSDV+SFGVL 
Sbjct: 170 MAPESLKEGKFTSKSDVWSFGVLL 193

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 79.5 bits (197), Expect = 5e-19
 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 22/142 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L+H ++V L     +  ++ LV +    G L D L    +            I    
Sbjct: 51  LKKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQI--LS 108

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSR----- 105
            L YLH      I+HRD+K  NILLDE+   K             E+    +G+      
Sbjct: 109 ALEYLH---SKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAP 165

Query: 106 --ILPAKLTEKSDVYSFGVLCA 125
             +L     +  D++S GV+  
Sbjct: 166 EVLLGKGYGKAVDIWSLGVILY 187

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 20/136 (14%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLH 63
           LRH +LV L+G  ++   + +V + MA+G+L D+L +  +  +    +L   +    G+ 
Sbjct: 57  LRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGME 116

Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAKHS-----RERQLRLLGSRILPAKLT------ 112
           YL        +HRD+ + N+L+ E+ VAK S     +E        + LP K T      
Sbjct: 117 YLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGK-LPVKWTAPEALR 172

Query: 113 -----EKSDVYSFGVL 123
                 KSDV+SFG+L
Sbjct: 173 EKKFSTKSDVWSFGIL 188

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 28/152 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L   +H ++V   G +++  E+ +V +  + G+L+D L  +    L       +C    +
Sbjct: 51  LKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKD-LLKSTNQTLTESQIAYVCKELLK 109

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----------HSRERQLRLLGSR---- 105
           GL YLH+   N IIHRD+K+ NILL  +   K            ++ R   ++G+     
Sbjct: 110 GLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARN-TMVGTPYWMA 165

Query: 106 ---ILPAKLTEKSDVYSFGVLCARPAMLPMAE 134
              I       K+D++S G+       + +AE
Sbjct: 166 PEVINGKPYDYKADIWSLGITA-----IELAE 192

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 46/144 (31%), Positives = 62/144 (43%), Gaps = 24/144 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L H ++V LI    +   + LV +    G L D+L      PL      KI +   R
Sbjct: 52  LRRLSHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSR--GGPLSEDEAKKIALQILR 109

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLR------LLGSR---- 105
           GL YLH    N IIHRD+K  NILLDEN V K      +++           +G+     
Sbjct: 110 GLEYLH---SNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMA 166

Query: 106 ---ILPAKL-TEKSDVYSFGVLCA 125
              +L       K DV+S GV+  
Sbjct: 167 PEVLLGGNGYGPKVDVWSLGVILY 190

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 1   LSNLRHRHLVSLIGHHVEN-KEMILVY-DCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           LS+L+H ++V   G   +  K  + ++ + ++ G+L   L    K P   + +    I  
Sbjct: 53  LSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQI-- 110

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
             GL YLH    N I+HRD+K  NIL+D + V K
Sbjct: 111 LEGLAYLH---SNGIVHRDIKGANILVDSDGVVK 141

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 24/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L    H ++V LIG  V+ + + +V + +  G+L   L    K  L     L++ + AA 
Sbjct: 46  LKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKK-KNRLTVKKLLQMSLDAAA 104

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLL----GSRILPAKL 111
           G+ YL   ++N  IHRD+ + N L+ EN V K      SRE +  +     G + +P K 
Sbjct: 105 GMEYLE--SKNC-IHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKW 161

Query: 112 T-----------EKSDVYSFGVL 123
           T            +SDV+S+G+L
Sbjct: 162 TAPEALNYGRYTSESDVWSYGIL 184

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 60.0 bits (145), Expect = 1e-11
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 19/139 (13%)

Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           ++ LRH +LV L+G  VE K  + +V + MA+G+L D+L +  +  L     LK  +   
Sbjct: 53  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 112

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS----RERQLRLLGSRILPAKLTE-- 113
             + YL     N  +HRD+ + N+L+ E+ VAK S     +       +  LP K T   
Sbjct: 113 EAMEYLEA---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 169

Query: 114 ---------KSDVYSFGVL 123
                    KSDV+SFG+L
Sbjct: 170 ALREKKFSTKSDVWSFGIL 188

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 39/160 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLK------I 54
           + + +H ++V     ++   E+ +V + M  G+L D +  N         R+       +
Sbjct: 69  MKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFV-------RMNEPQIAYV 121

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN---------WVAKHSRERQLR--LLG 103
           C    +GL YLH      +IHRD+KS NILL ++         + A+ ++E+  R  ++G
Sbjct: 122 CREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVG 178

Query: 104 SR-------ILPAKLTEKSDVYSFGVLCARPAMLPMAENE 136
           +        I       K D++S G++C     + MAE E
Sbjct: 179 TPYWMAPEVIKRKDYGPKVDIWSLGIMC-----IEMAEGE 213

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 23/140 (16%)

Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
            L H +LV L G   + + + +V + MA G L ++L    K  L   W L +C      +
Sbjct: 55  KLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYL-RERKGKLGTEWLLDMCSDVCEAM 113

Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSR-------- 105
            YL     N  IHRD+ + N L+ E+ V K S     R +         G++        
Sbjct: 114 EYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPP 170

Query: 106 --ILPAKLTEKSDVYSFGVL 123
                ++ + KSDV+SFGVL
Sbjct: 171 EVFDYSRFSSKSDVWSFGVL 190

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 49/156 (31%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQ----WMWRLKI 54
           L  L H +++       E  ++ +V +    G L   +        P        W +++
Sbjct: 53  LKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQL 112

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG----SRIL--- 107
           C+     L YLH+     I+HRD+K  NI L  N + K         LG    S++L   
Sbjct: 113 CLA----LKYLHS---RKILHRDIKPQNIFLTSNGLVK---------LGDFGISKVLSST 156

Query: 108 ----------PAKL----------TEKSDVYSFGVL 123
                     P  L            KSD++S G +
Sbjct: 157 VDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCV 192

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYD-CMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L  LRH + +   G ++      LV + C+  G+  D +   HK PLQ +    IC GA 
Sbjct: 69  LQQLRHPNTIEYKGCYLREHTAWLVMEYCL--GSASD-ILEVHKKPLQEVEIAAICHGAL 125

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           +GL YLH+  R   IHRD+K+ NILL E    K
Sbjct: 126 QGLAYLHSHER---IHRDIKAGNILLTEPGTVK 155

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 55.1 bits (133), Expect = 6e-10
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 21/141 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  LRH+HL+SL       + + ++ + M +G+L   L +     L     + +    A 
Sbjct: 56  LKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAE 115

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRI-------LPAKLT- 112
           G+ YL        IHRD+ + NIL+ E+ V K +     RL+   +       +P K T 
Sbjct: 116 GMAYLEE---QNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTA 172

Query: 113 ----------EKSDVYSFGVL 123
                      KSDV+SFG+L
Sbjct: 173 PEAASHGTFSTKSDVWSFGIL 193

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 55.0 bits (132), Expect = 7e-10
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H  LV L G   E   + LV++ M  G L D+L    +        L +C+    
Sbjct: 53  MMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYL-RAQRGKFSQETLLGMCLDVCE 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSR------ 105
           G+ YL +   + +IHRD+ + N L+ EN V K S     R +         G++      
Sbjct: 112 GMAYLES---SNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWS 168

Query: 106 ----ILPAKLTEKSDVYSFGVL 123
                  +K + KSDV+SFGVL
Sbjct: 169 SPEVFSFSKYSSKSDVWSFGVL 190

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 19/138 (13%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           ++ L H++LV L+G  + N  + +V + M++G L + L    +  +  +  L+  +  A 
Sbjct: 53  MTKLHHKNLVRLLGVILHNG-LYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAE 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS----RERQLRLLGSRILPA------- 109
           G+ YL +     ++HRD+ + NIL+ E+ VAK S           + +  LP        
Sbjct: 112 GMEYLES---KKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEA 168

Query: 110 ----KLTEKSDVYSFGVL 123
               K + KSDV+S+GVL
Sbjct: 169 LKHKKFSSKSDVWSYGVL 186

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 52.2 bits (125), Expect = 8e-09
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 33/154 (21%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTL----RDHLYNNHKPPLQWMWRL-KIC 55
           +SN  H ++V L+G  + N+   ++ + M  G L    RD       PPL  +  L  IC
Sbjct: 53  MSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDIC 112

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN-------------------WVAKHSRE 96
           +  A+G  YL    +   IHRD+ + N L+ E                    + + + R+
Sbjct: 113 LDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRK 169

Query: 97  RQLRLLGSR------ILPAKLTEKSDVYSFGVLC 124
               LL  R      +L  K T +SDV+SFGVL 
Sbjct: 170 EGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLM 203

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 17/98 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ------WMWRLKI 54
           L  L+H ++V L+      +++ LV++      L+ +L +    PL        M++L  
Sbjct: 52  LKELKHPNIVKLLDVIHTERKLYLVFEYCDM-DLKKYL-DKRPGPLSPNLIKSIMYQL-- 107

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                RGL Y H    + I+HRD+K  NIL++ + V K
Sbjct: 108 ----LRGLAYCH---SHRILHRDLKPQNILINRDGVLK 138

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 45/152 (29%), Positives = 60/152 (39%), Gaps = 31/152 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN-----HKPPLQWMWRLKIC 55
           +S   H+++V LIG   E     ++ + MA G L+  L  N         L     L   
Sbjct: 63  MSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCA 122

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLD---ENWVAKHS---------RERQLRLLG 103
              A+G  YL     N  IHRD+ + N LL       VAK +         R    R  G
Sbjct: 123 RDVAKGCKYLEE---NHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGG 179

Query: 104 SRILPAK-----------LTEKSDVYSFGVLC 124
             +LP K            T K+DV+SFGVL 
Sbjct: 180 RAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLL 211

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA- 59
           L NL+H ++V  IG    +  + ++ +    G+LR  +      P        + +    
Sbjct: 53  LKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFP-----ESLVAVYVYQ 107

Query: 60  --RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
             +GL YLH      +IHRD+K+ NIL  ++ V K
Sbjct: 108 VLQGLAYLH---EQGVIHRDIKAANILTTKDGVVK 139

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 26/101 (25%)

Query: 54  ICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----------HSRERQLRLL 102
           I     +GL YLH    N  IHRD+K+ NILL+E   AK            +  ++  ++
Sbjct: 104 ILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVI 160

Query: 103 GSR-------ILPAKLTEKSDVYSFGVLCARPAMLPMAENE 136
           G+        I       K+D++S G+       + MAE +
Sbjct: 161 GTPFWMAPEVIQEIGYNNKADIWSLGITA-----IEMAEGK 196

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 25/143 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPL--QWMWRLKICIGA 58
           L+ L   +++      ++  ++ +V +    G L   L      PL    +WR  I I  
Sbjct: 53  LAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQI-- 110

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAK-------- 110
             GL +LH+     I+HRD+KS N+ LD     K       +LL      A         
Sbjct: 111 LLGLAHLHS---KKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYY 167

Query: 111 ----------LTEKSDVYSFGVL 123
                       EKSDV++ GV+
Sbjct: 168 LSPELCEDKPYNEKSDVWALGVV 190

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 35/154 (22%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN---------HKPPLQWMWR 51
           L+N +H ++V   G   E    I+V++ M  G L   L ++            P+  +  
Sbjct: 62  LTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTL 121

Query: 52  ---LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE----RQL 99
              L+I +  A G+ YL        +HRD+ + N L+  + V K      SR+       
Sbjct: 122 SQLLQIAVQIASGMVYL---ASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYY 178

Query: 100 RLLGSRILP-----------AKLTEKSDVYSFGV 122
           R+ G  +LP            K T +SDV+SFGV
Sbjct: 179 RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGV 212

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 21/119 (17%)

Query: 22  MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST 81
           + L+ +   RG LR+ L       L +  +L + I   +GL+ L+  T     ++++ S 
Sbjct: 97  LSLILEYCTRGYLREVLDKEKD--LSFKTKLDMAIDCCKGLYNLYKYTNKP--YKNLTSV 152

Query: 82  NILLDENWVAK---HSRERQLRLLGS-----------RILP---AKLTEKSDVYSFGVL 123
           + L+ EN+  K   H  E+ L                ++L    ++ T K D+YS GV+
Sbjct: 153 SFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVV 211

Length = 283

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 28/149 (18%)

Query: 1   LSNLRHRHLVSLIGHHV--ENKEMILVYDCMARGTLRD---HLYNNHKP-PLQWMWRLKI 54
           L  L+H ++V      +   N+ + +V +    G L           K    +++WR  I
Sbjct: 53  LRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWR--I 110

Query: 55  CIGAARGLHYLHTGT--RNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAK-- 110
                  L+  H  +   NT++HRD+K  NI LD N   K       ++LG     AK  
Sbjct: 111 LTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTY 170

Query: 111 ----------------LTEKSDVYSFGVL 123
                             EKSD++S G L
Sbjct: 171 VGTPYYMSPEQLNHMSYDEKSDIWSLGCL 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 1   LSNLRH-RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGA 58
           L++L H  ++V L     +   + LV + +  G+L D L     K PL     L I    
Sbjct: 51  LASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQI 110

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
              L YLH      IIHRD+K  NILLD +
Sbjct: 111 LSALEYLH---SKGIIHRDIKPENILLDRD 137

Length = 384

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 17/93 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ------WMWRLKI 54
           L  L H  LV+L     + + M LV D +  G LR HL  + K          W+     
Sbjct: 54  LQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHL--SQKVKFSEEQVKFWI----C 107

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDE 87
            I  A  L YLH+     IIHRD+K  NILLDE
Sbjct: 108 EIVLA--LEYLHS---KGIIHRDIKPDNILLDE 135

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 22/142 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 56  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 115

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 116 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 172

Query: 110 --------KLTEKSDVYSFGVL 123
                   K + KSDV++FGVL
Sbjct: 173 APESLAYNKFSIKSDVWAFGVL 194

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 36/149 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN-----HKPPLQWMWRLKIC 55
           +  LRH  LV L     E + + +V + M++G+L D L +        P L       + 
Sbjct: 55  MKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQL-------VD 107

Query: 56  IGA--ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GS 104
           + A  A G+ YL        IHRD+ + NIL+ EN V K +     RL+         G+
Sbjct: 108 MAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGA 164

Query: 105 R----------ILPAKLTEKSDVYSFGVL 123
           +              + T KSDV+SFG+L
Sbjct: 165 KFPIKWTAPEAANYGRFTIKSDVWSFGIL 193

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYD-CMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L  LRH + +   G ++      LV + C+  G+  D L   HK PLQ +    +  GA 
Sbjct: 69  LQKLRHPNTIQYRGCYLREHTAWLVMEYCL--GSASD-LLEVHKKPLQEVEIAAVTHGAL 125

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDE 87
           +GL YLH+   + +IHRDVK+ NILL E
Sbjct: 126 QGLAYLHS---HNMIHRDVKAGNILLSE 150

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           ++ L H H++ ++G   E+    L  + MA G++  HL + +    +    +       R
Sbjct: 57  MARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSV-SHLLSKYGA-FKEAVIINYTEQLLR 114

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLD 86
           GL YLH    N IIHRDVK  N+L+D
Sbjct: 115 GLSYLH---ENQIIHRDVKGANLLID 137

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 47.4 bits (112), Expect = 4e-07
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 55  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 113

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 114 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 170

Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 171 APEAALYGRFTIKSDVWSFGIL 192

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L+H +LV   G  V  +++ +  +  + GTL + L +        +    + +    
Sbjct: 53  LELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQL--LE 110

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           GL YLH+   + I+HRD+K  NI LD N V K
Sbjct: 111 GLAYLHS---HGIVHRDIKPANIFLDHNGVIK 139

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 22/142 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  L+ L       + + +V + M  G+L ++L       L+    + +    A 
Sbjct: 55  MKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVAS 114

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRI--------LPAKLT 112
           G+ YL        IHRD+ + N+L+ EN + K +     R++   I         P K T
Sbjct: 115 GMAYLEA---QNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWT 171

Query: 113 E-----------KSDVYSFGVL 123
                       KSDV+SFG+L
Sbjct: 172 APEAALYNRFSIKSDVWSFGIL 193

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 37/157 (23%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPL 46
           +S+L+H ++V L+G   + +   ++++ +A G L + L  N               K  L
Sbjct: 62  MSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSL 121

Query: 47  QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS-----RE----R 97
                L I I  A G+ YL   + +  +HRD+ + N L+ E    K S     R+     
Sbjct: 122 DCSDFLHIAIQIAAGMEYL---SSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSAD 178

Query: 98  QLRLLGSRILP-----------AKLTEKSDVYSFGVL 123
             R+    +LP            K T +SD++SFGV+
Sbjct: 179 YYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVV 215

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 23/139 (16%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLH 63
           L H  LV L G   + K + +V + M  G L ++L        + M  L +C     G+ 
Sbjct: 56  LSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDML-LSMCQDVCEGME 114

Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI-------- 106
           YL    RN+ IHRD+ + N L+    V K S     R +         G++         
Sbjct: 115 YLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPE 171

Query: 107 --LPAKLTEKSDVYSFGVL 123
               +K + KSDV+SFGVL
Sbjct: 172 VFNFSKYSSKSDVWSFGVL 190

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M +G+L D L       L+    + +    A 
Sbjct: 55  MKKLRHDKLVPLYAV-VSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIAD 113

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   IHRD+++ NIL+ +N V K +     RL+         G++      
Sbjct: 114 GMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWT 170

Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 171 APEAALYGRFTIKSDVWSFGIL 192

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 1   LSNLR---HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG 57
           L  LR     ++V   G   +  E+ +V + M  G+L D L    K P   +    I   
Sbjct: 50  LKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVL--AYIARQ 107

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILL 85
             +GL YLHT  R+ IIHRD+K +N+L+
Sbjct: 108 ILKGLDYLHT-KRH-IIHRDIKPSNLLI 133

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L +     L+    + +    A 
Sbjct: 55  MKKLRHDKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAA 113

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   IHRD++S NIL+ +  V K +     RL+         G++      
Sbjct: 114 GMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWT 170

Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 171 APEAALYGRFTIKSDVWSFGIL 192

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 43/162 (26%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--------------------YN 40
           ++   H ++V L+G     K M L+++ MA G L + L                      
Sbjct: 62  MAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCG 121

Query: 41  NHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-------- 92
            +  PL    +L I    A G+ YL   +    +HRD+ + N L+ EN V K        
Sbjct: 122 LNPLPLSCTEQLCIAKQVAAGMAYL---SERKFVHRDLATRNCLVGENMVVKIADFGLSR 178

Query: 93  ------HSRERQLRLLGSRILP------AKLTEKSDVYSFGV 122
                 + +  +   +  R +P       + T +SDV+++GV
Sbjct: 179 NIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGV 220

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 23/140 (16%)

Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
            L H  LV L G   + + + +V + M+ G L ++L   H    Q    L++C     G+
Sbjct: 55  KLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYL-REHGKRFQPSQLLEMCKDVCEGM 113

Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---------ERQLRLLGSR-------- 105
            YL +      IHRD+ + N L+D+    K S          +     +GS+        
Sbjct: 114 AYLES---KQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 170

Query: 106 --ILPAKLTEKSDVYSFGVL 123
             +L +K + KSDV++FGVL
Sbjct: 171 EVLLYSKFSSKSDVWAFGVL 190

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 25/140 (17%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLH 63
           L H +L+ L G  V    +++V +    G+L D L  +              +  A G+ 
Sbjct: 53  LDHENLIRLYGV-VLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMR 111

Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG----------SRILP----- 108
           YL +      IHRD+ + NILL  +   K      +R L              +P     
Sbjct: 112 YLES---KRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCA 168

Query: 109 ------AKLTEKSDVYSFGV 122
                    +  SDV+ FGV
Sbjct: 169 PESLRTRTFSHASDVWMFGV 188

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 19/86 (22%)

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKH-----SRERQLRLLGS--- 104
           KI     +GL YLH+  R  IIHRD+K +NILL      K      S E    L G+   
Sbjct: 109 KIAESVLKGLSYLHS--RK-IIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTG 165

Query: 105 --------RILPAKLTEKSDVYSFGV 122
                   RI     +  SDV+S G+
Sbjct: 166 TSFYMAPERIQGKPYSITSDVWSLGL 191

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 17/98 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPL------QWMWRLKI 54
           L  L+H +++ L+        + LV++ M    L   +  +    L       +M     
Sbjct: 56  LQELKHPNIIGLLDVFGHKSNINLVFEFME-TDLE-KVIKDKSIVLTPADIKSYMLMT-- 111

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                RGL YLH    N I+HRD+K  N+L+  + V K
Sbjct: 112 ----LRGLEYLH---SNWILHRDLKPNNLLIASDGVLK 142

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 34/154 (22%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGT----LRDH-----LYNNHKPP--LQWM 49
           L+NL+H H+V   G  VE   +I+V++ M  G     LR H     L      P  L   
Sbjct: 61  LTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQS 120

Query: 50  WRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE----RQLR 100
             L I    A G+ YL +      +HRD+ + N L+ EN + K      SR+       R
Sbjct: 121 QMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYR 177

Query: 101 LLGSRILPA-----------KLTEKSDVYSFGVL 123
           + G  +LP            K T +SDV+S GV+
Sbjct: 178 VGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVV 211

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 29/105 (27%)

Query: 1   LSNLRHRHLVSLIGHHVENK--EMILVYDCMA---RGTLRDHLYNNHKPPLQWMWRLKIC 55
           L  LRH ++V L           + +V++ M     G L                  K  
Sbjct: 52  LQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEV-------------KFT 98

Query: 56  IGAAR--------GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
               +        GL YLH    N I+HRD+K +NIL++ + V K
Sbjct: 99  ESQIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDGVLK 140

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L NL+H  +V   G   +++ + +  + M  G+++D L   +    + + R K       
Sbjct: 58  LKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQL-KAYGALTETVTR-KYTRQILE 115

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           G+ YLH    N I+HRD+K  NIL D  
Sbjct: 116 GVEYLH---SNMIVHRDIKGANILRDSA 140

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 18/86 (20%)

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDE----------------NWVAKHSRE 96
           KI +   +GL YLH   ++ IIHRDVK +NIL++                 N +AK    
Sbjct: 104 KIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVG 161

Query: 97  RQLRLLGSRILPAKLTEKSDVYSFGV 122
               +   RI     + KSD++S G+
Sbjct: 162 TSSYMAPERIQGNDYSVKSDIWSLGL 187

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 79  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKD 138

Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 139 LVSCTYQVARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKK 195

Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 196 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 228

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
           RH ++V+  G ++   ++ +V +    G+L+D +Y   + PL  +    +C    +GL Y
Sbjct: 58  RHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQD-IYQVTRGPLSELQIAYVCRETLKGLAY 116

Query: 65  LHTGTRNTIIHRDVKSTNILLDEN 88
           LH       IHRD+K  NILL E+
Sbjct: 117 LHE---TGKIHRDIKGANILLTED 137

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 6   HRHLVSLIGHHVE------NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           HR++ +  G  ++      + ++ LV +    G++ D + N     L+  W   IC    
Sbjct: 62  HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREIL 121

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           RGL +LH   ++ +IHRD+K  N+LL EN
Sbjct: 122 RGLSHLH---QHKVIHRDIKGQNVLLTEN 147

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 26/139 (18%)

Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYL 65
           H +++ L G   +++ ++++ + M  G+L D     +         + +  G A G+ YL
Sbjct: 64  HPNIIRLEGVVTKSRPVMIITEYMENGSL-DKFLRENDGKFTVGQLVGMLRGIASGMKYL 122

Query: 66  HTGTRNTIIHRDVKSTNILLDENWVAKHS---RERQLRLL-------GSRILPA------ 109
              +    +HRD+ + NIL++ N V K S     R+L          G +I P       
Sbjct: 123 ---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKI-PIRWTAPE 178

Query: 110 -----KLTEKSDVYSFGVL 123
                K T  SDV+SFG++
Sbjct: 179 AIAYRKFTSASDVWSFGIV 197

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYD-CMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L  L+H + +   G +++     LV + C+  G+  D L   HK PLQ +    I  GA 
Sbjct: 75  LQQLKHPNTIEYKGCYLKEHTAWLVMEYCL--GSASD-LLEVHKKPLQEVEIAAITHGAL 131

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDE 87
           +GL YLH+   + +IHRD+K+ NILL E
Sbjct: 132 QGLAYLHS---HNMIHRDIKAGNILLTE 156

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 40/147 (27%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L+H ++V LIG     K   L+++ +    L + L N     L W  R KI IG A+
Sbjct: 737 MGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAK 791

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLD------------------------ENWVAKHSRE 96
            L +LH      ++  ++    I++D                          +VA  +RE
Sbjct: 792 ALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLCTDTKCFISSAYVAPETRE 851

Query: 97  RQLRLLGSRILPAKLTEKSDVYSFGVL 123
            +            +TEKSD+Y FG++
Sbjct: 852 TK-----------DITEKSDIYGFGLI 867

Length = 968

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 15/97 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--YNNHKPPL---QWMWRLKIC 55
           L  LRH ++V+L         + LV++ + R TL + L       PP     ++W+L   
Sbjct: 54  LRQLRHENIVNLKEAFRRKGRLYLVFEYVER-TLLELLEASPGGLPPDAVRSYIWQL--- 109

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
               + + Y H    + IIHRD+K  NIL+ E+ V K
Sbjct: 110 ---LQAIAYCH---SHNIIHRDIKPENILVSESGVLK 140

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S L H+HLV   G  V   E I+V + +  G+L  +L  N    +   W+L++    A 
Sbjct: 53  MSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKN-LINISWKLEVAKQLAW 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL 85
            LH+L       + H +V + N+LL
Sbjct: 112 ALHFLED---KGLTHGNVCAKNVLL 133

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  LRH +LV+LI      K + LV++ +   T+ D L       L      K      R
Sbjct: 54  LKQLRHENLVNLIEVFRRKKRLYLVFEFVDH-TVLDDLEKYPNG-LDESRVRKYLFQILR 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           G+ + H    + IIHRD+K  NIL+ ++ V K
Sbjct: 112 GIEFCH---SHNIIHRDIKPENILVSQSGVVK 140

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYD-CMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L  ++H + +   G ++      LV + C+  G+  D L   HK PLQ +    I  GA 
Sbjct: 79  LQRIKHPNSIEYKGCYLREHTAWLVMEYCL--GSASD-LLEVHKKPLQEVEIAAITHGAL 135

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDE 87
           +GL YLH+   + +IHRD+K+ NILL E
Sbjct: 136 QGLAYLHS---HNMIHRDIKAGNILLTE 160

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 39/154 (25%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKI---------- 54
           +H+++++L+G   +   + +V +  A G LRD L     P                    
Sbjct: 74  KHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKD 133

Query: 55  ----CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLR 100
                   ARG+ +L +      IHRD+ + N+L+ E+ V K          H  +   +
Sbjct: 134 LVSFAYQVARGMEFLAS---KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRK 190

Query: 101 LLGSRILPAK-----------LTEKSDVYSFGVL 123
               R LP K            T +SDV+SFGVL
Sbjct: 191 TTNGR-LPVKWMAPEALFDRVYTHQSDVWSFGVL 223

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI---G 57
           +S   H ++V      V   E+ LV   ++ G+L D +      P   +    I      
Sbjct: 53  MSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIM--KSSYPRGGLDEAIIATVLKE 110

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             +GL YLH    N  IHRD+K+ NILL E+
Sbjct: 111 VLKGLEYLH---SNGQIHRDIKAGNILLGED 138

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 27/144 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           +  L+H  LV L  + V  +E I ++ + M  G+L D L       L     + +    A
Sbjct: 55  MKQLQHPRLVRL--YAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIA 112

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK 110
            G+ ++    R   IHRD+++ NIL+ E    K +     RL+         G++  P K
Sbjct: 113 EGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAK-FPIK 168

Query: 111 LTE-----------KSDVYSFGVL 123
            T            KSDV+SFG+L
Sbjct: 169 WTAPEAINYGTFTIKSDVWSFGIL 192

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQWMWRLKICIGA 58
           LS L+H ++V  +G   E   + +  + +  G+L   L  Y +   P+  ++  +I +G 
Sbjct: 56  LSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLG- 114

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
              L YLH       +HRD+K  NIL+D N V K
Sbjct: 115 ---LEYLHD---RNTVHRDIKGANILVDTNGVVK 142

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 54  ICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           I     RGL YLH    N +IHRD+K  NILL +N
Sbjct: 118 ILRETLRGLAYLH---ENKVIHRDIKGQNILLTKN 149

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 26/141 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L ++RH  LV+L G   ++  + LV + +  G L  HL  + + P            AA+
Sbjct: 55  LQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPV-----ARFYAAQ 109

Query: 61  ---GLHYLHTGTRNTIIHRDVKSTNILLDEN--------WVAKHSRERQLRLLGS----- 104
               L YLH+     I++RD+K  N+LLD +          AK  + R   L G+     
Sbjct: 110 VVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLA 166

Query: 105 -RILPAKLTEKS-DVYSFGVL 123
             I+ +K   K+ D ++ G+L
Sbjct: 167 PEIILSKGYGKAVDWWALGIL 187

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 24/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L+H  LV L     + + + ++ + MA+G+L D L ++    +     +      A 
Sbjct: 55  MKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAE 114

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAKL 111
           G+ Y+    R   IHRD+++ N+L+ E+ + K +     R++         G++  P K 
Sbjct: 115 GMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAK-FPIKW 170

Query: 112 TE-----------KSDVYSFGVL 123
           T            KSDV+SFG+L
Sbjct: 171 TAPEAINFGSFTIKSDVWSFGIL 193

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 39/158 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP---------PLQ---- 47
           L+NL+H H+V   G   +   +I+V++ M  G L   L   H P         P Q    
Sbjct: 61  LTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFL-RAHGPDAMILVDGQPRQAKGE 119

Query: 48  --WMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE---- 96
                 L I    A G+ YL +      +HRD+ + N L+  N + K      SR+    
Sbjct: 120 LGLSQMLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST 176

Query: 97  RQLRLLGSRILPA-----------KLTEKSDVYSFGVL 123
              R+ G  +LP            K T +SDV+SFGV+
Sbjct: 177 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVI 214

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 37/153 (24%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ +              
Sbjct: 82  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKD 141

Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 142 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 198

Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 199 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 43.8 bits (103), Expect = 8e-06
 Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 37/153 (24%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP--------------PLQWMW 50
           +H+++++L+G   +   + ++ +  A+G LR+ L     P               L +  
Sbjct: 76  KHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKD 135

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 136 LVSCAYQVARGMEYLES---RRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKK 192

Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFG+L
Sbjct: 193 TSNGRLPVKWMAPEALFDRVYTHQSDVWSFGIL 225

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 27/145 (18%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L  L H ++V   G       + + L+ + +  G+LRD+L   H+  +     L      
Sbjct: 60  LRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYL-QRHRDQINLKRLLLFSSQI 118

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGS----------RILP 108
            +G+ YL +      IHRD+ + NIL++   + K S     ++L               P
Sbjct: 119 CKGMDYLGS---QRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESP 175

Query: 109 A-----------KLTEKSDVYSFGV 122
                       K +  SDV+SFGV
Sbjct: 176 IFWYAPECLRTSKFSSASDVWSFGV 200

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           KI +   + L YLH+  + ++IHRDVK +N+L++ N
Sbjct: 107 KIAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRN 140

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 36/152 (23%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI---GAAR 60
           L+H +++  +   + + E+ +V   MA G+  D L   H P  + +  L I         
Sbjct: 56  LQHPNILPYVTSFIVDSELYVVSPLMAYGSCED-LLKTHFP--EGLPELAIAFILKDVLN 112

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVA------------KHSR------------E 96
            L Y+H       IHR VK+++ILL  +               KH +             
Sbjct: 113 ALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSV 169

Query: 97  RQLRLLGSRILPAKL---TEKSDVYSFGVLCA 125
           + L  L   +L   L    EKSD+YS G+   
Sbjct: 170 KNLPWLSPEVLQQNLQGYNEKSDIYSVGITAC 201

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 22/155 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +   R  ++VS  G  +    + +  + M  G+L D +Y    P +      KI +    
Sbjct: 57  MHECRSPYIVSFYGAFLNENNICMCMEFMDCGSL-DRIYKKGGP-IPVEILGKIAVAVVE 114

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDE----------------NWVAKHSRERQLRLLGS 104
           GL YL+   R  I+HRD+K +NIL++                 N +A         +   
Sbjct: 115 GLTYLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPE 172

Query: 105 RILPAKLTEKSDVYSFGVLCARPAM--LPMAENEQ 137
           RI   K T KSDV+S G+     A+   P A +  
Sbjct: 173 RIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNI 207

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           K+ +   + LHYL    ++ +IHRDVK +NILLD +   K
Sbjct: 118 KMTVAIVKALHYLKE--KHGVIHRDVKPSNILLDASGNVK 155

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 6   HRHLVSLIGHHVE------NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           HR++ +  G  ++      + ++ LV +    G++ D + N     L+  W   IC    
Sbjct: 72  HRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREIL 131

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           RGL +LH    + +IHRD+K  N+LL EN
Sbjct: 132 RGLAHLHA---HKVIHRDIKGQNVLLTEN 157

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 25/139 (17%)

Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYL 65
           H H+V L+G  + + ++ L+   M  G L D++  NHK  +   + L  C+  A+G+ YL
Sbjct: 68  HPHVVRLLGICL-SSQVQLITQLMPLGCLLDYV-RNHKDNIGSQYLLNWCVQIAKGMSYL 125

Query: 66  HTGTRNTIIHRDVKSTNILLDE-NWV-------AK--HSRERQLRLLGSR---------- 105
                  ++HRD+ + N+L+     V       AK     E++    G +          
Sbjct: 126 E---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALES 182

Query: 106 ILPAKLTEKSDVYSFGVLC 124
           IL    T KSDV+S+GV  
Sbjct: 183 ILHRIYTHKSDVWSYGVTV 201

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 25/148 (16%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN----NHKPPLQWMWRLKICIGAA 59
           LRH ++V      +EN  + +V D +    L +H  +      +   + +W + + +  A
Sbjct: 66  LRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLA 125

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN--------WVAKH-SRERQLRLLGSRIL--- 107
             L YLH   R  I+HRD+   NI+L E+         +AK    E +L  +   IL   
Sbjct: 126 --LRYLHKEKR--IVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSC 181

Query: 108 PAKL-----TEKSDVYSFGVLCARPAML 130
           P  +      EK+DV++FG +  +   L
Sbjct: 182 PEIVKNEPYGEKADVWAFGCILYQMCTL 209

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 1   LSNLRHRHLVSLI-GHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           LS + H  +V L      E K + LV +    G L  HL    +   +        I  A
Sbjct: 47  LSRINHPFIVKLHYAFQTEEK-LYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLA 105

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDE 87
             L YLH      II+RD+K  NILLD 
Sbjct: 106 --LEYLH---SLGIIYRDLKPENILLDA 128

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 24/91 (26%)

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLD----------------ENWVAKHSRE 96
           KI +   + L+YL    +  IIHRDVK +NILLD                 + +AK +R+
Sbjct: 111 KIAVATVKALNYLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAK-TRD 167

Query: 97  RQLR--LLGSRILP---AKLTEKSDVYSFGV 122
              R  +   RI P        +SDV+S G+
Sbjct: 168 AGCRPYMAPERIDPSARDGYDVRSDVWSLGI 198

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 32/165 (19%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L    H ++V LIG   + + + +V + +  G     L    K  L+    +K  + AA 
Sbjct: 46  LKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFL-RKKKDELKTKQLVKFALDAAA 104

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLLGS---RILPAKLT 112
           G+ YL +      IHRD+ + N L+ EN V K      SR+    +  S   + +P K T
Sbjct: 105 GMAYLES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWT 161

Query: 113 -----------EKSDVYSFGVL---------CARPAMLPMAENEQ 137
                       +SDV+S+G+L         C  P M      EQ
Sbjct: 162 APEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQ 206

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 39/154 (25%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P + + +              
Sbjct: 76  KHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKD 135

Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLR 100
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K          H+ +   +
Sbjct: 136 LVSCAYQVARGMEYLAS---QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKK 192

Query: 101 LLGSRILPAK-----------LTEKSDVYSFGVL 123
               R LP K            T +SDV+SFGVL
Sbjct: 193 TTNGR-LPVKWMAPEALFDRVYTHQSDVWSFGVL 225

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 35/153 (22%)

Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHLYN----------NHKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L +             P L+ M ++   I 
Sbjct: 70  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEI- 128

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE----RQLRLLGSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K      +R+       R  G  +LP
Sbjct: 129 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 184

Query: 109 AK-----------LTEKSDVYSFGVLCARPAML 130
            +            T  SDV+SFGV+    A L
Sbjct: 185 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL 217

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 45  PLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           P Q +WR  I I   RGL  LH      I+HRD+KS NILL  N + K
Sbjct: 101 PEQEIWR--IFIQLLRGLQALHE---QKILHRDLKSANILLVANDLVK 143

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGA 58
           L+ +  R +VSL        ++ LV   M  G LR H+YN     P        + C   
Sbjct: 47  LAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFP---EPRACFYT 103

Query: 59  AR---GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           A+   GL +LH   +  II+RD+K  N+LLD +
Sbjct: 104 AQIISGLEHLH---QRRIIYRDLKPENVLLDND 133

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 33/151 (21%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHK-------PPLQWMWR 51
              L H+++V L+G     E   MIL Y  +  G L+  L            PPL    +
Sbjct: 62  FRKLSHKNVVRLLGLCREAEPHYMILEYTDL--GDLKQFLRATKSKDEKLKPPPLSTKQK 119

Query: 52  LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRE----R 97
           + +C   A G+ +L        +HRD+ + N L+      K          ++ E    R
Sbjct: 120 VALCTQIALGMDHLSN---ARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLR 176

Query: 98  Q----LRLLGSR-ILPAKLTEKSDVYSFGVL 123
                LR L    +     + KSDV+SFGVL
Sbjct: 177 NALIPLRWLAPEAVQEDDFSTKSDVWSFGVL 207

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 33/152 (21%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL----------YNNHKPPLQWMW 50
           +S L++ +++ L+G  V +  + ++ + M  G L   L          + N+ P +    
Sbjct: 71  MSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIAN 130

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENW---VAKHSRERQL------RL 101
            L + +  A G+ YL +      +HRD+ + N L+  ++   +A     R L      R+
Sbjct: 131 LLYMAVQIASGMKYLAS---LNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRI 187

Query: 102 LGSRILP-----------AKLTEKSDVYSFGV 122
            G  +LP            K T  SDV++FGV
Sbjct: 188 QGRAVLPIRWMAWESILLGKFTTASDVWAFGV 219

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 24/91 (26%)

Query: 52  LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL---RLLG 103
           L+     A G+ YL   +    IHRD+ + N+L+ EN  +K      SR  ++   + +G
Sbjct: 122 LQFASDVATGMQYL---SEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMG 178

Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
              LP +            T KSDV+SFGVL
Sbjct: 179 R--LPVRWMAIESLNYSVYTTKSDVWSFGVL 207

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 38/157 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP--------------PL 46
           L+ L+H+H+V   G   E + +++V++ M  G L   L  +H P               L
Sbjct: 61  LTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFL-RSHGPDAKILAGGEDVAPGQL 119

Query: 47  QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE----R 97
                L I    A G+ YL +      +HRD+ + N L+ +  V K      SR+     
Sbjct: 120 TLGQMLAIASQIASGMVYLAS---LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 176

Query: 98  QLRLLGSRILPA-----------KLTEKSDVYSFGVL 123
             R+ G  +LP            K T +SD++SFGV+
Sbjct: 177 YYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVV 213

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGA 58
           L  + HR +++LI H    K  +    CM     +  L+   +   PL     + I    
Sbjct: 140 LKTISHRAIINLI-HAYRWKSTV----CMVMPKYKCDLFTYVDRSGPLPLEQAITIQRRL 194

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDE 87
              L YLH      IIHRDVK+ NI LDE
Sbjct: 195 LEALAYLH---GRGIIHRDVKTENIFLDE 220

Length = 392

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           RGL YLH+     +IHRD+K +NIL++ N
Sbjct: 114 RGLKYLHSAN---VIHRDLKPSNILVNSN 139

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            L YLH+     IIHRD+K  NILLD++
Sbjct: 114 ALEYLHS---KGIIHRDLKPENILLDKD 138

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 32/151 (21%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLY---------NNHKPPLQWMWR 51
           LS L   ++  L+G    +  + ++ + M  G L   L            +   L +   
Sbjct: 73  LSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTL 132

Query: 52  LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS---RERQL------RLL 102
           L +    A G+ YL +   N  +HRD+ + N L+ +N+  K +     R L      R+ 
Sbjct: 133 LYMATQIASGMRYLES--LN-FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQ 189

Query: 103 GSRILP-----------AKLTEKSDVYSFGV 122
           G   LP            K T KSDV++FGV
Sbjct: 190 GRAPLPIRWMAWESVLLGKFTTKSDVWAFGV 220

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 31/144 (21%)

Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL--------YNNHKPPLQWMWRLKICIGAA 59
           H+V L+G     +  ++V + MA+G L+ +L         N    P      +++    A
Sbjct: 70  HVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIA 129

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---HSRERQL------RLLGSRILP-- 108
            G+ YL        +HRD+ + N ++ E+   K       R +      R  G  +LP  
Sbjct: 130 DGMAYLAA---KKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 186

Query: 109 ---------AKLTEKSDVYSFGVL 123
                       T KSDV+SFGV+
Sbjct: 187 WMAPESLKDGVFTTKSDVWSFGVV 210

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 40/159 (25%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-----------------K 43
           LS L+  +++ L+G  V+   + ++ + M  G L   L ++H                  
Sbjct: 73  LSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCL 132

Query: 44  PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENW---VAKHSRERQL- 99
           P + +   L + +  A G+ YL +      +HRD+ + N L+ EN    +A     R L 
Sbjct: 133 PAISYSSLLHVALQIASGMKYLSS---LNFVHRDLATRNCLVGENLTIKIADFGMSRNLY 189

Query: 100 -----RLLGSRILP-----------AKLTEKSDVYSFGV 122
                R+ G  +LP            K T  SDV++FGV
Sbjct: 190 AGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGV 228

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 24/141 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L++ ++V+ +   +   E+ +V + +A G+L D +        Q     + C+ A  
Sbjct: 70  MKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQA-- 127

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR--LLGSR--IL 107
            L +LH    N +IHRD+KS N+LL         D  + A+ + E+  R  ++G+   + 
Sbjct: 128 -LEFLHA---NQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMA 183

Query: 108 PAKLTEKS-----DVYSFGVL 123
           P  +T K+     D++S G++
Sbjct: 184 PEVVTRKAYGPKVDIWSLGIM 204

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP-PLQWMWRLKICIGAA 59
           L   +H ++V L+         +LV + M    L + L +  +P P   +      +   
Sbjct: 53  LQACQHPYVVKLLDVFPHGSGFVLVMEYMPS-DLSEVLRDEERPLPEAQVKSYMRML--L 109

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           +G+ Y+H    N I+HRD+K  N+L+  + V K
Sbjct: 110 KGVAYMHA---NGIMHRDLKPANLLISADGVLK 139

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 24/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L    H ++V LIG   + + + +V + +  G     L     P L+    +++   AA 
Sbjct: 47  LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFL-RTEGPRLKVKELIQMVENAAA 105

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLL----GSRILPAKL 111
           G+ YL +      IHRD+ + N L+ E  V K      SRE +  +     G + +P K 
Sbjct: 106 GMEYLES---KHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKW 162

Query: 112 T-----------EKSDVYSFGVL 123
           T            +SDV+SFG+L
Sbjct: 163 TAPEALNYGRYSSESDVWSFGIL 185

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 35/148 (23%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP----LQWMWRLKICI 56
           ++ L H  +V LIG     + ++LV +    G L  +L    + P     +   ++    
Sbjct: 50  MAQLDHPCIVRLIGVCKG-EPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQV---- 104

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR----------- 105
             A G+ YL +      +HRD+ + N+LL     AK S     R LG+            
Sbjct: 105 --AMGMAYLES---KHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGR 159

Query: 106 ----------ILPAKLTEKSDVYSFGVL 123
                     I   K + KSDV+S+GV 
Sbjct: 160 WPLKWYAPECINYGKFSSKSDVWSYGVT 187

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 43/157 (27%)

Query: 1   LSNLRHRHLVSLIGHHVENKEM------ILVYDCMARGTLRDHLY------NNHKPPLQW 48
           + +  H +++ LIG   E   +      +++   M  G L   L          K PLQ 
Sbjct: 55  MKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQT 114

Query: 49  MWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENW---VAKH--SRE------- 96
           +  LK  +  A G+ YL    RN  IHRD+ + N +L E+    VA    S++       
Sbjct: 115 L--LKFMVDIALGMEYL--SNRN-FIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYY 169

Query: 97  RQLRLLGSRILPAK-----------LTEKSDVYSFGV 122
           RQ R+     +P K            T KSDV++FGV
Sbjct: 170 RQGRIAK---MPVKWIAIESLADRVYTSKSDVWAFGV 203

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  +  R +VSL        ++ LV   M  G L+ H+YN  +P       +        
Sbjct: 47  LEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIIC 106

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDE 87
           GL +LH   +  I++RD+K  N+LLD+
Sbjct: 107 GLEHLH---QRRIVYRDLKPENVLLDD 130

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            L YLH    N IIHRD+K  NIL+D N
Sbjct: 105 ALEYLH---SNGIIHRDLKPDNILIDSN 129

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           + + +H ++V+  G ++   ++ +  +    G+L+D +Y+    PL       +     +
Sbjct: 60  MKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQD-IYHV-TGPLSESQIAYVSRETLQ 117

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           GL+YLH+  +   +HRD+K  NILL +N
Sbjct: 118 GLYYLHSKGK---MHRDIKGANILLTDN 142

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 29/141 (20%)

Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK--PPLQWMWRLKICIGAARGLH 63
           H +++ L G   + K  +++ + M  G L  +L ++       Q +  L+   G A G+ 
Sbjct: 65  HHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLR---GIAAGMK 121

Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI-----L 107
           YL   +    +HRD+ + NIL++ N   K S     R+L           G +I      
Sbjct: 122 YL---SDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTA 178

Query: 108 PA-----KLTEKSDVYSFGVL 123
           P      K T  SDV+SFG++
Sbjct: 179 PEAIAYRKFTSASDVWSFGIV 199

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 1   LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWM-WRLKICIG 57
           L  L H ++V   G   E   K + L+ + +  G+LRD+L  +     Q + +  +IC  
Sbjct: 60  LKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQIC-- 117

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
              G+ YLH+      IHRD+ + N+LLD + + K
Sbjct: 118 --EGMAYLHS---QHYIHRDLAARNVLLDNDRLVK 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 25/143 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           +  L+H  LV L  H V  KE I ++ + MA+G+L D L ++          +      A
Sbjct: 55  MKTLQHDKLVKL--HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIA 112

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILL------------------DENWVAKHSRERQLRL 101
            G+ ++    +   IHRD+++ NIL+                  D  + A+   +  ++ 
Sbjct: 113 EGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKW 169

Query: 102 LGSRILP-AKLTEKSDVYSFGVL 123
                +     T KSDV+SFG+L
Sbjct: 170 TAPEAINFGSFTIKSDVWSFGIL 192

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 37/151 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILV-YDCMARGTLRDHLYNNHKPPLQWMWRLKICIG-- 57
           + +  H +++SL+G  + ++   LV    M  G LR+ + +    P      +K  IG  
Sbjct: 50  MKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNP-----TVKDLIGFG 104

Query: 58  --AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS-----------------RERQ 98
              A+G+ YL        +HRD+ + N +LDE++  K +                     
Sbjct: 105 LQVAKGMEYL---ASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTG 161

Query: 99  LRL------LGSRILPAKLTEKSDVYSFGVL 123
            +L      L S +   K T KSDV+SFGVL
Sbjct: 162 AKLPVKWMALES-LQTQKFTTKSDVWSFGVL 191

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQWMWRLKICIGAARGLH 63
           H ++V +   ++   E+ +V + +  G L D +     ++  +       +C+   + L 
Sbjct: 75  HPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----TVCLAVLKALS 129

Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAKHS 94
           +LH      +IHRD+KS +ILL  +   K S
Sbjct: 130 FLHA---QGVIHRDIKSDSILLTSDGRVKLS 157

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 1   LSNLRHRHLVSLIG---HHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQWMWRLKIC 55
           L NLRH  +V   G      E K  I V + M  G+++D L  Y      +   +  +I 
Sbjct: 58  LKNLRHDRIVQYYGCLRDPEEKKLSIFV-EYMPGGSIKDQLKAYGALTENVTRRYTRQIL 116

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLD 86
               +G+ YLH+   N I+HRD+K  NIL D
Sbjct: 117 ----QGVSYLHS---NMIVHRDIKGANILRD 140

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 33/149 (22%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH---KPPLQWMWRLKICIGAAR 60
           L H +++  +G  +E+   +LV +    G L+++L +N        Q     ++    A 
Sbjct: 52  LNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVAS 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-------HSRERQ------------LRL 101
           GL +LH   +   IH D+   N  L  +   K         +  +            LR 
Sbjct: 112 GLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRW 168

Query: 102 LG--------SRILPAKLTEKSDVYSFGV 122
           L           +LP   T+KS+++S GV
Sbjct: 169 LAPELVEIRGQDLLPKDQTKKSNIWSLGV 197

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP-PLQWMWRLKICIGAA 59
           LS  R  ++    G  ++  ++ ++ +    G+  D L    KP  L   +   I     
Sbjct: 53  LSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLL----KPGKLDETYIAFILREVL 108

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            GL YLH   +   IHRD+K+ NILL E 
Sbjct: 109 LGLEYLHEEGK---IHRDIKAANILLSEE 134

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 3/32 (9%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           GL+Y+H   RN I+HRD+K+ NIL+ ++ + K
Sbjct: 131 GLYYIH---RNKILHRDMKAANILITKDGILK 159

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           RGL Y+H+     ++HRD+K +NIL++EN
Sbjct: 119 RGLKYVHSAG---VVHRDLKPSNILINEN 144

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ----WMWRLKICI 56
           L  +  + +V+L   +     + LV   M  G L+ H+YN   P  +      +  +I  
Sbjct: 54  LEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILC 113

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDE 87
           G    L  LH   R   ++RD+K  NILLD+
Sbjct: 114 G----LEDLH---RENTVYRDLKPENILLDD 137

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  + H  ++ L G    NK   L+     +  L  +L       +  +  L I     R
Sbjct: 137 LRAINHPSIIQLKGTFTYNKFTCLILP-RYKTDLYCYLAAKRNIAICDI--LAIERSVLR 193

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLD 86
            + YLH    N IIHRD+K+ NI ++
Sbjct: 194 AIQYLH---ENRIIHRDIKAENIFIN 216

Length = 391

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
           +H ++V+  G ++  +++ +  +    G+L+D +Y+    PL  +    +C    +GL Y
Sbjct: 64  KHCNIVAYFGSYLSREKLWICMEYCGGGSLQD-IYHV-TGPLSELQIAYVCRETLQGLAY 121

Query: 65  LHTGTRNTIIHRDVKSTNILLDEN 88
           LH+  +   +HRD+K  NILL +N
Sbjct: 122 LHSKGK---MHRDIKGANILLTDN 142

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase adapter protein beta

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 29  MARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           MA G+    L       +       I  GA RGL+YLH   +N  IHR++K+++IL+  +
Sbjct: 81  MAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKASHILISGD 137

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. STRAD-beta is also referred to as ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein), since the human gene encoding it is located within the juvenile ALS2 critical region on chromosome 2q33-q34. It is not linked to the development of ALS2. Length = 328

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 24/84 (28%)

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL---RLLGSRILPAK 110
           ARG+ YL   ++   IHRD+ + NIL+ EN+VAK      SR +++   + +G   LP +
Sbjct: 134 ARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGR--LPVR 188

Query: 111 -----------LTEKSDVYSFGVL 123
                       T  SDV+S+GVL
Sbjct: 189 WMAIESLNYSVYTTNSDVWSYGVL 212

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWM-WRLKICIGAA 59
           +S L H+HLV L G  V + E I+V + +  G L   L+         + W+L +    A
Sbjct: 55  MSQLSHKHLVKLYGVCVRD-ENIMVEEYVKFGPLDVFLHREKNNV--SLHWKLDVAKQLA 111

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILL 85
             LHYL       ++H +V   NIL+
Sbjct: 112 SALHYLED---KKLVHGNVCGKNILV 134

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 15/110 (13%)

Query: 1   LSNLRHRHLVSLI-GHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           LS  +H ++V L   +  ENK  IL+  C   G L D +    +  L       +C    
Sbjct: 56  LSECKHPNIVGLYEAYFYENKLWILIEFC-DGGAL-DSIMLELERGLTEPQIRYVCRQML 113

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR 100
             L++LH    + +IHRD+K+ NILL         D    AK+    Q R
Sbjct: 114 EALNFLH---SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKR 160

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 23/85 (27%)

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSRERQLRLLG 103
           ARG+ +L +      IHRD+ + NILL EN V K               + R+   RL  
Sbjct: 184 ARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPL 240

Query: 104 SRILPAKL-----TEKSDVYSFGVL 123
             + P  +     T +SDV+SFGVL
Sbjct: 241 KWMAPESIFDKVYTTQSDVWSFGVL 265

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 23/85 (27%)

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSRERQLRLLG 103
           ARG+ +L +      IHRD+ + NILL EN V K               + R+   RL  
Sbjct: 183 ARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPL 239

Query: 104 SRILPAKL-----TEKSDVYSFGVL 123
             + P  +     T +SDV+SFGVL
Sbjct: 240 KWMAPESIFDKVYTTQSDVWSFGVL 264

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 1   LSNLRHRHLVSL----IGHHVENKEMILVYDC---MARGTLRDHLYNNHKPPLQWMWRLK 53
           L NLRH ++V L    +G H+++  +++ Y C   +A       L +N   P        
Sbjct: 60  LLNLRHPNIVELKEVVVGKHLDSIFLVMEY-CEQDLAS------LLDNMPTPFSESQVKC 112

Query: 54  ICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           + +   RGL YLH    N IIHRD+K +N+LL +    K
Sbjct: 113 LMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLK 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 3/25 (12%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL 85
           G+HYLH+   N ++HRD+K  NIL+
Sbjct: 120 GVHYLHS---NWVLHRDLKPANILV 141

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 19/91 (20%)

Query: 6   HRHLVSLIGHHVENKE--MILVYDCMARGTLRDHLYNNHKPPL------QWMWRLKICIG 57
           H +++ LI    + K   + LV++ M    L + L    K PL       +M++L     
Sbjct: 57  HPNILRLIEVLFDRKTGRLALVFELM-DMNLYE-LIKGRKRPLPEKRVKSYMYQL----- 109

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             + L ++H   RN I HRD+K  NIL+ ++
Sbjct: 110 -LKSLDHMH---RNGIFHRDIKPENILIKDD 136

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 11/90 (12%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQWMWRLKICI 56
           L NL H  +V   G       + + +  + M  G+++D L  Y      +   +  +I  
Sbjct: 58  LKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQIL- 116

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLD 86
               G+ YLH+   N I+HRD+K  NIL D
Sbjct: 117 ---EGVSYLHS---NMIVHRDIKGANILRD 140

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 29/154 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +   +H ++V+ +  ++   E+ +V + +A G+L D +        Q      +C    +
Sbjct: 70  MRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIA---AVCRECLQ 126

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR--LLGSR--IL 107
            L +LH+   N +IHRD+KS NILL         D  + A+ + E+  R  ++G+   + 
Sbjct: 127 ALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMA 183

Query: 108 PAKLTEKS-----DVYSFGVLCARPAMLPMAENE 136
           P  +T K+     D++S G++      + M E E
Sbjct: 184 PEVVTRKAYGPKVDIWSLGIMA-----IEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 1   LSNLRHRHLVSLIG---HHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQWMWRLKIC 55
           L NL+H  +V   G      E K + +  + M  G+++D L  Y      +   +  +I 
Sbjct: 58  LKNLQHERIVQYYGCLRDRAE-KTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQIL 116

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLD 86
                G+ YLH+   N I+HRD+K  NIL D
Sbjct: 117 ----EGMSYLHS---NMIVHRDIKGANILRD 140

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 42/150 (28%)

Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
              H H+V LIG   EN  + +V +    G LR +L   +K  L     +      +  L
Sbjct: 63  QFDHPHIVKLIGVITENP-VWIVMELAPLGELRSYL-QVNKYSLDLASLILYSYQLSTAL 120

Query: 63  HYLHTGTRNTIIHRDVKSTNIL-----------------LDENWVAKHSRERQLRLLGSR 105
            YL    R   +HRD+ + N+L                 L++    K S+ +        
Sbjct: 121 AYLE-SKR--FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGK-------- 169

Query: 106 ILPAK-----------LTEKSDVYSFGVLC 124
            LP K            T  SDV+ FGV  
Sbjct: 170 -LPIKWMAPESINFRRFTSASDVWMFGVCM 198

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 47/156 (30%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNN-----HKPPLQWMWRLK 53
           L +L+H ++V   G  +    + + LV + +  G+LRD+L  +     H+  L +    +
Sbjct: 59  LKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYAS--Q 116

Query: 54  ICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILP----- 108
           IC    +G+ YL    R   +HRD+ + NIL     V   +R +      +++LP     
Sbjct: 117 IC----KGMEYL-GSKR--YVHRDLATRNIL-----VESENRVKIGDFGLTKVLPQDKEY 164

Query: 109 ---------------------AKLTEKSDVYSFGVL 123
                                +K +  SDV+SFGV+
Sbjct: 165 YKVREPGESPIFWYAPESLTESKFSVASDVWSFGVV 200

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 25/142 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           ++++ H HLV L+G  + +  + LV   M  G L D+++  HK  +     L  C+  A+
Sbjct: 63  MASMDHPHLVRLLGVCL-SPTIQLVTQLMPHGCLLDYVHE-HKDNIGSQLLLNWCVQIAK 120

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL----------GSR----- 105
           G+ YL       ++HRD+ + N+L+      K +     RLL          G +     
Sbjct: 121 GMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKW 177

Query: 106 -----ILPAKLTEKSDVYSFGV 122
                I   K T +SDV+S+GV
Sbjct: 178 MALECIHYRKFTHQSDVWSYGV 199

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 13/92 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKE-MILVYDCMARGTLRDHLYNNHKPPLQ----WMWRLKIC 55
           L  +  R +VSL  +  E K+ + LV   M  G L+ H+YN   P         +  ++C
Sbjct: 54  LEKVNSRFVVSL-AYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELC 112

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLDE 87
            G    L  L    R  I++RD+K  NILLD+
Sbjct: 113 CG----LEDLQ---RERIVYRDLKPENILLDD 137

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP-PLQWMWRLKICIGAA 59
           LS     ++    G +++  ++ ++ + +  G+  D L    KP PL+  +   I     
Sbjct: 56  LSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLL----KPGPLEETYIATILREIL 111

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDE 87
           +GL YLH+  +   IHRD+K+ N+LL E
Sbjct: 112 KGLDYLHSERK---IHRDIKAANVLLSE 136

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDE 87
            GL YLH   R  IIHRDVK+ NI +++
Sbjct: 168 EGLRYLH-AQR--IIHRDVKTENIFIND 192

Length = 357

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           +GL + H    + I+HRD+K  N+L++   V K
Sbjct: 109 QGLAFCH---SHGILHRDLKPENLLINTEGVLK 138

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           G++YLH    N I+HRD+K+ NIL+D   + K
Sbjct: 127 GINYLH---ENHILHRDIKAANILIDNQGILK 155

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHT 67
           ++V   G    + E+ +  + M  G+L   L    + P Q +   K+ I   +GL YL  
Sbjct: 64  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--KVSIAVIKGLTYLRE 121

Query: 68  GTRNTIIHRDVKSTNILLD 86
             ++ I+HRDVK +NIL++
Sbjct: 122 --KHKIMHRDVKPSNILVN 138

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ----WMWRLKICI 56
           L  +  R +VSL   +     + LV   M  G L+ H+YN   P         +  +I  
Sbjct: 54  LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITC 113

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDE 87
           G    L  LH   R  I++RD+K  NILLD+
Sbjct: 114 G----LEDLH---RERIVYRDLKPENILLDD 137

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           + +  H ++V +   ++   E+ +V + +  G L D + +      Q      +C+   R
Sbjct: 73  MRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA---TVCLSVLR 129

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL 85
            L YLH      +IHRD+KS +ILL
Sbjct: 130 ALSYLHN---QGVIHRDIKSDSILL 151

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS 94
           GL YLH+     I+HRD+K+ N+L+D + + K S
Sbjct: 120 GLAYLHS---KGILHRDLKADNLLVDADGICKIS 150

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L+H +LV+LI      +++ LV++      L +   N    P   +   KI     +
Sbjct: 54  LKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLI--KKIIWQTLQ 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            +++ H   ++  IHRDVK  NIL+ +    K
Sbjct: 112 AVNFCH---KHNCIHRDVKPENILITKQGQIK 140

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 3/27 (11%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLD 86
           + L Y+H+G    +IHRD+K +NILL+
Sbjct: 118 KALKYIHSGN---VIHRDLKPSNILLN 141

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 25/142 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           ++++ + H+  L+G  + +  + L+   M  G L D++   HK  +   + L  C+  A+
Sbjct: 63  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYV-REHKDNIGSQYLLNWCVQIAK 120

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGS---------------- 104
           G++YL       ++HRD+ + N+L+      K +     +LLG+                
Sbjct: 121 GMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKW 177

Query: 105 ----RILPAKLTEKSDVYSFGV 122
                IL    T +SDV+S+GV
Sbjct: 178 MALESILHRIYTHQSDVWSYGV 199

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 24/137 (17%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
           ++ ++V+ +  ++   E+ +V + +A G+L D +        Q     + C+ A   L +
Sbjct: 75  KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQA---LEF 131

Query: 65  LHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR--LLGSR--ILPAKL 111
           LH+   N +IHRD+KS NILL         D  + A+ + E+  R  ++G+   + P  +
Sbjct: 132 LHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV 188

Query: 112 TEKS-----DVYSFGVL 123
           T K+     D++S G++
Sbjct: 189 TRKAYGPKVDIWSLGIM 205

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 29/143 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRD---HLYNNHKPPLQWMWRL-KICI 56
           LS L+H ++++   H +++  +++  +    GTL D               +W L +I  
Sbjct: 53  LSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVS 112

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA------- 109
             +    Y+H   +  I+HRD+K+ NI L +  + K       ++LGS    A       
Sbjct: 113 AVS----YIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTP 165

Query: 110 -----------KLTEKSDVYSFG 121
                      K   KSD+++ G
Sbjct: 166 YYMSPELCQGVKYNFKSDIWALG 188

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 11/92 (11%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN----NHKPPLQWMWRLKICI 56
           L  +  R +VSL   +     + LV   M  G L+ H+Y+      +      +  +IC 
Sbjct: 54  LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICC 113

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           G    L  LH   +  I++RD+K  NILLD++
Sbjct: 114 G----LEDLH---QERIVYRDLKPENILLDDH 138

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)

Query: 1   LSNLRHRHLVSLI-GHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L++  H ++V L+   + EN   IL+  C A G +   +    +P  +   R+ +C    
Sbjct: 56  LASCDHPNIVKLLDAFYYENNLWILIEFC-AGGAVDAVMLELERPLTEPQIRV-VCKQTL 113

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR 100
             L+YLH    N IIHRD+K+ NIL          D    AK++R  Q R
Sbjct: 114 EALNYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRR 160

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 54  ICIGAARGLHYLHTGTRNTIIHRDVKSTNILL 85
           I  GA  GL +LH    N IIHRDVK  NILL
Sbjct: 133 ILYGALLGLQHLHN---NRIIHRDVKGNNILL 161

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILL 85
            G+ +LH    N I+HRD+K++N+LL
Sbjct: 117 SGVAHLH---DNWILHRDLKTSNLLL 139

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           RGL YLH+     I+HRD+K  N+L++ N V K
Sbjct: 114 RGLKYLHSAG---ILHRDIKPGNLLVNSNCVLK 143

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 31/143 (21%)

Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK--PPLQWMWRLKICIGAARGLH 63
           H +++ L G   +++ ++++ + M  G L   L  N      +Q +  L+   G A G+ 
Sbjct: 64  HPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR---GIAAGMK 120

Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL-------------LGSRI---- 106
           YL   +    +HRD+ + NIL++ N V K S     R              LG +I    
Sbjct: 121 YL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRW 177

Query: 107 -LPA-----KLTEKSDVYSFGVL 123
             P      K T  SDV+S+G++
Sbjct: 178 TAPEAIAYRKFTSASDVWSYGIV 200

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 24/137 (17%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
           ++ ++V+ +  ++   E+ +V + +A G+L D +        Q     + C+ A   L +
Sbjct: 74  KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQA---LDF 130

Query: 65  LHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR--LLGSR--ILPAKL 111
           LH+   N +IHRD+KS NILL         D  + A+ + E+  R  ++G+   + P  +
Sbjct: 131 LHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV 187

Query: 112 TEKS-----DVYSFGVL 123
           T K+     D++S G++
Sbjct: 188 TRKAYGPKVDIWSLGIM 204

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           RGL Y+H+     +IHRD+K +N+L++E+
Sbjct: 118 RGLKYIHSAN---VIHRDLKPSNLLVNED 143

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 30/135 (22%)

Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHT 67
           ++V   G    + E+ +  + M  G+L   L    + P   + ++ I +   RGL YL  
Sbjct: 60  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPENILGKISIAV--LRGLTYLRE 117

Query: 68  GTRNTIIHRDVKSTNILLDEN---------------------WVAKHSRERQLRLLGSRI 106
             ++ I+HRDVK +NIL++                       +V   S     RL G+  
Sbjct: 118 --KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTH- 174

Query: 107 LPAKLTEKSDVYSFG 121
                T +SD++S G
Sbjct: 175 ----YTVQSDIWSLG 185

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.98
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.98
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.97
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.97
KOG0589	426	consensus Serine/threonine protein kinase [General	99.97
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.97
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.97
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.97
KOG0198	313	consensus MEKK and related serine/threonine protei	99.97
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.97
KOG0605	550	consensus NDR and related serine/threonine kinases	99.97
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.97
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.97
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.97
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.97
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.97
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.96
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.96
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.96
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.96
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.96
KOG0610	459	consensus Putative serine/threonine protein kinase	99.96
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.96
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.96
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.96
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.96
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.96
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.96
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.96
KOG0578	550	consensus p21-activated serine/threonine protein k	99.96
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.96
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.96
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.96
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.96
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.96
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.96
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
PTZ00267	478	NIMA-related protein kinase; Provisional	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
PHA02988	283	hypothetical protein; Provisional	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.96
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.96
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.96
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.96
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.95
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.95
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.95
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.95
KOG0584	632	consensus Serine/threonine protein kinase [General	99.95
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.95
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.95
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.95
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.95
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.95
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.95
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.95
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.95
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.95
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.95
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.95
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.95
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.95
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.95
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.95
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.95
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.95
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.95
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.95
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.95
PHA03212	391	serine/threonine kinase US3; Provisional	99.95
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.95
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.95
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.95
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.95
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.95
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.95
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.95
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.95
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.95
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.95
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.95
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.95
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.95
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.95
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.95
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.95
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.95
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.95
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.95
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.95
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.95
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.95
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.95
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.95
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.95
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.94
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.94
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.94
PHA03207	392	serine/threonine kinase US3; Provisional	99.94
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.94
KOG0586	596	consensus Serine/threonine protein kinase [General	99.94
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.94
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.94
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.94
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.94
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.94
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.94
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.94
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.94
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.94
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.94
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.94
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.94
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.94
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.94
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.94
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.94
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.94
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.94
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.94
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.94
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.94
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.94
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.94
PHA03209	357	serine/threonine kinase US3; Provisional	99.94
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.94
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.94
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.94
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.94
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.94
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.94
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.94
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.94
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.94
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.94
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.94
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.94
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.94
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.94
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.94
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.94
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.94
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.94
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.94
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.94
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.94
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.94
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.94
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.94
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.94
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.94
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.94
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.94
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.94
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.94
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.94
PHA03211	461	serine/threonine kinase US3; Provisional	99.94
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.94
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.94
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.94
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.94
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.94
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.94
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.94
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.94
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.94
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.94
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.94
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.94
PTZ00036	440	glycogen synthase kinase; Provisional	99.94
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.94
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.94
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.94
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.94
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.94
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.94
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.94
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.94
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.94
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.94
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.94
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.94
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.94
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.94
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.94
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.94
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.93
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.93
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.93
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.93
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.93
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.93
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.93
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.93
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.93
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.93
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.93
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.93
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.93
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.93
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.93
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.93
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.93
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.93
PTZ00283	496	serine/threonine protein kinase; Provisional	99.93
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.93
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.93
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.93
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.93
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.93
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.93
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.93
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.93
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.93
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.93
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.93
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.93
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.93
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.93
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.93
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.93
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.93
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.93
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.93
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.93
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.93
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.93
PHA03210	501	serine/threonine kinase US3; Provisional	99.93
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.93
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.93
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.93
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.93
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.93
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.93
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.93
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.93
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.93
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.93
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.93
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.93
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.93
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.93
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.93
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.93
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.93
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.93
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.93
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.93
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.93
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.93
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.93
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.93
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.92
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.92
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.92
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.92
PLN00009	294	cyclin-dependent kinase A; Provisional	99.92
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.92
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.92
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.92
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.92
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.92
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.92
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.92
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.92
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.92
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.92
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.92
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.92
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.92
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.92
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.92
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.92
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.92
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.92
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.92
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.92
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.91
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.91
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.91
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.91
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.91
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.91
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.91
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.91
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.91
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.91
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.91
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.91
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.91
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.91
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.91
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.91
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.91
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.91
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.91
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.91
PTZ00284	467	protein kinase; Provisional	99.91
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.91
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.91
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.91
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.91
PHA02882	294	putative serine/threonine kinase; Provisional	99.91
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.91
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.91
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.91
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.91
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.9
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.9
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.9
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.9
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.9
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.9
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.9
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.9
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.9
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.9
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.9
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.9
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.9
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.9
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.9
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.9
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.9
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.9
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.9
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.89
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.89
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.89
KOG1152	772	consensus Signal transduction serine/threonine kin	99.89
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.88
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.88
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.88
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.88
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.88
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.88
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.87
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.87
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.86
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.85
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.85
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.85
KOG3653	534	consensus Transforming growth factor beta/activin	99.85
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.85
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.84
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.83
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.83
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.83
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.8
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.79
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.79
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.78
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.77
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.77
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.76
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.75
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.71
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.69
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.68
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.63
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.61
PRK10345	210	hypothetical protein; Provisional	99.58
PRK09188	365	serine/threonine protein kinase; Provisional	99.56
PRK12274	218	serine/threonine protein kinase; Provisional	99.56
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.55
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.53
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.52
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.5
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.5
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.49
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.48
KOG1243	690	consensus Protein kinase [General function predict	99.42
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.42
PRK14879	211	serine/threonine protein kinase; Provisional	99.4
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.37
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.36
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.32
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.32
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.26
smart00090	237	RIO RIO-like kinase.	99.24
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.23
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.21
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.19
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.16
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.15
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.14
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.03
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.81
KOG3087	229	consensus Serine/threonine protein kinase [General	98.71
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.69
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.68
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.6
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.58
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.54
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.54
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.51
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.44
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.43
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.41
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.39
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.21
PRK09902	216	hypothetical protein; Provisional	98.04
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.0
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.0
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.94
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.88
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.86
COG4248	637	Uncharacterized protein with protein kinase and he	97.66
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.3
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.03
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	96.74
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	96.73
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.43
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	96.22
KOG1235	538	consensus Predicted unusual protein kinase [Genera	95.85
KOG0576	829	consensus Mitogen-activated protein kinase kinase	95.58
KOG2268	465	consensus Serine/threonine protein kinase [Signal	94.06
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	93.97
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	93.89
PRK05231	319	homoserine kinase; Provisional	93.81
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	93.76
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	93.67
KOG1093	725	consensus Predicted protein kinase (contains TBC a	93.36
PF01636	239	APH: Phosphotransferase enzyme family This family	93.31
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	93.2
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	92.97
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	92.68
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	92.47
PHA03111	444	Ser/Thr kinase; Provisional	92.17
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	91.99
COG2334	331	Putative homoserine kinase type II (protein kinase	91.91
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	91.69
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	91.35
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	91.2
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	90.78
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	90.68
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	90.53
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	90.48
PRK10271	188	thiK thiamine kinase; Provisional	89.62
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	89.29
PRK09550	401	mtnK methylthioribose kinase; Reviewed	89.18
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	88.4
PLN02236	344	choline kinase	87.9
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	87.73
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	86.65
PRK06148	1013	hypothetical protein; Provisional	85.66
PRK12396	409	5-methylribose kinase; Reviewed	85.38
PRK11768	325	serine/threonine protein kinase; Provisional	84.94
PLN02756	418	S-methyl-5-thioribose kinase	84.41
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	82.84
PRK06149	972	hypothetical protein; Provisional	82.74

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-39  Score=216.94  Aligned_cols=133  Identities=26%  Similarity=0.312  Sum_probs=119.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||++++++.+++++|+|||||.+|+|.++++++.  .+++.+++..+.|++.|+++||+   ++|+||||||
T Consensus        63 Lkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~---~~IiHRDLKP  137 (429)
T KOG0595|consen   63 LKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHE---NNIIHRDLKP  137 (429)
T ss_pred             HHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCc
Confidence            578999999999999999999999999999999999996553  78899999999999999999998   9999999999


Q ss_pred             CcEEEcCC------Ccccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDEN------WVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~------~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      .|||++..      ...|+.|||++++                 +|+.+..++|+.|+|+||+|+++|+|+++..|+..+
T Consensus       138 QNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  138 QNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             ceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            99999875      4579999999863                 344455789999999999999999999999998854


Q ss_pred             c
Q 041845          138 E  138 (143)
Q Consensus       138 ~  138 (143)
                      .
T Consensus       218 t  218 (429)
T KOG0595|consen  218 T  218 (429)
T ss_pred             C
Confidence            3

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.5e-36  Score=198.48  Aligned_cols=138  Identities=25%  Similarity=0.303  Sum_probs=117.3

Q ss_pred             CCCCCCCCcceeeE-EeecCCc-hhhhHhhhcCCCHHHHhh--cCCCCCCcHHHHHHHHHHHHHHHhHhhcCCC-CCeee
Q 041845            1 LSNLRHRHLVSLIG-HHVENKE-MILVYDCMARGTLRDHLY--NNHKPPLQWMWRLKICIGAARGLHYLHTGTR-NTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~-~~~~~~~-~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~-~~i~h   75 (143)
                      |++++|||||++++ .|.+++. ++++||+|.+|+|.++++  +..+..+++.++++++.|++.|+..+|+..+ ..+.|
T Consensus        72 LkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmH  151 (375)
T KOG0591|consen   72 LKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMH  151 (375)
T ss_pred             HHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceee
Confidence            57899999999998 5655555 999999999999999985  3345688999999999999999999997222 24899


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||||.||+++.+|.+|++|||++++                  .|+.+...+|+.++||||+||++||||....||-..
T Consensus       152 RDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~  231 (375)
T KOG0591|consen  152 RDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD  231 (375)
T ss_pred             ccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc
Confidence            99999999999999999999998763                  344566778999999999999999999987777654


Q ss_pred             c
Q 041845          138 E  138 (143)
Q Consensus       138 ~  138 (143)
                      +
T Consensus       232 n  232 (375)
T KOG0591|consen  232 N  232 (375)
T ss_pred             c
Confidence            3

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-36  Score=209.27  Aligned_cols=130  Identities=33%  Similarity=0.435  Sum_probs=117.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++|+|+|||+++++|..+..++|||||++.|+|.++++...+..+...+.+.++.||+.|++||.+   ++++||||.+
T Consensus       255 Mk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes---~~~IHRDLAA  331 (468)
T KOG0197|consen  255 MKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLES---KNYIHRDLAA  331 (468)
T ss_pred             HHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHh---CCccchhhhh
Confidence            5789999999999999998899999999999999999987666788899999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCC
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMA  133 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~  133 (143)
                      +|||++++..+|++|||+++.                   +|+.+....++.++|||||||++||++| |..|
T Consensus       332 RNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~p  404 (468)
T KOG0197|consen  332 RNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVP  404 (468)
T ss_pred             hheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCC
Confidence            999999999999999999873                   2333455678999999999999999999 3344

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=198.10  Aligned_cols=132  Identities=26%  Similarity=0.299  Sum_probs=119.2

Q ss_pred             CCCCCCCcceeeEEeecCCc-hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKE-MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~-~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +..+||+||+++|.|..+.. +.++||||++|+|.+++...  +.+++...-+++.+++.|+.|||+  ...|+|||+||
T Consensus       132 ~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIKP  207 (364)
T KOG0581|consen  132 RSCQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIKP  207 (364)
T ss_pred             hhCCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCCH
Confidence            45689999999999999884 99999999999999999544  478899999999999999999995  47899999999


Q ss_pred             CcEEEcCCCcccccccchh----------------hccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQL----------------RLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~----------------~~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      .|+|++.+|.+|++|||..                ++.|+++.++.|+.++||||||+.++|+++|.+|...+
T Consensus       208 sNlLvNskGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~  280 (364)
T KOG0581|consen  208 SNLLVNSKGEVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP  280 (364)
T ss_pred             HHeeeccCCCEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence            9999999999999999865                35678888899999999999999999999998877764

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=5e-35  Score=202.28  Aligned_cols=135  Identities=34%  Similarity=0.455  Sum_probs=118.0

Q ss_pred             CCCCCCCCcceeeEEeecCC-chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC-eeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT-IIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~-~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~-i~h~~l   78 (143)
                      |++++|||||+++|++.++. ..++||||+++|+|.+++.+.....+++..+..++.+|+.|+.|||+   .+ |+||||
T Consensus        93 l~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~---~~~iIHrDL  169 (362)
T KOG0192|consen   93 LSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHS---EGPIIHRDL  169 (362)
T ss_pred             HHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc---CCCeeeccc
Confidence            45689999999999999887 79999999999999999966445688999999999999999999998   77 999999


Q ss_pred             CCCcEEEcCCC-cccccccchhh------------------ccccccC--CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           79 KSTNILLDENW-VAKHSRERQLR------------------LLGSRIL--PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        79 ~~~nil~~~~~-~~k~~~~~~~~------------------~~~~~~~--~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |++|+|++.++ .+|++|||+++                  ++|+.+.  ...++.++||||||+++||++|+..|+...
T Consensus       170 K~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~  249 (362)
T KOG0192|consen  170 KSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDL  249 (362)
T ss_pred             ChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCC
Confidence            99999999998 99999999874                  2333344  347999999999999999999998777654


Q ss_pred             c
Q 041845          138 E  138 (143)
Q Consensus       138 ~  138 (143)
                      .
T Consensus       250 ~  250 (362)
T KOG0192|consen  250 A  250 (362)
T ss_pred             C
Confidence            3

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-35  Score=200.87  Aligned_cols=133  Identities=23%  Similarity=0.262  Sum_probs=113.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++++|..+.+.|||+||+++|+|.+++..+  ..+.+..-+.++.|++.|+.|||+   .||+||||||
T Consensus       230 LkkL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~n--k~l~ed~~K~~f~Qll~avkYLH~---~GI~HRDiKP  304 (475)
T KOG0615|consen  230 LKKLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVVAN--KYLREDLGKLLFKQLLTAVKYLHS---QGIIHRDIKP  304 (475)
T ss_pred             HHhcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHHhc--cccccchhHHHHHHHHHHHHHHHH---cCcccccCCc
Confidence            57899999999999999999999999999999999999654  367777779999999999999998   9999999999


Q ss_pred             CcEEEcCC---Ccccccccchhhccc-----------------cccCCC---CCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDEN---WVAKHSRERQLRLLG-----------------SRILPA---KLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~---~~~k~~~~~~~~~~~-----------------~~~~~~---~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||+..+   ..+|++|||++...+                 +.+..+   .+..++|+||+||++|-+++|..||+++
T Consensus       305 eNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~  384 (475)
T KOG0615|consen  305 ENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEE  384 (475)
T ss_pred             ceEEeccCCcceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccc
Confidence            99999877   778999999876442                 222222   2345889999999999999998888866


Q ss_pred             c
Q 041845          138 E  138 (143)
Q Consensus       138 ~  138 (143)
                      -
T Consensus       385 ~  385 (475)
T KOG0615|consen  385 Y  385 (475)
T ss_pred             c
Confidence            4

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.6e-35  Score=206.00  Aligned_cols=132  Identities=23%  Similarity=0.279  Sum_probs=118.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++|+|||||+++++|++++++|||.|+|..++|..++.+  ...+++..+..+++||+.|+.|||+   .+|+|||||..
T Consensus        73 r~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el~Kr--rk~ltEpEary~l~QIv~GlkYLH~---~~IiHRDLKLG  147 (592)
T KOG0575|consen   73 RSLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMELLKR--RKPLTEPEARYFLRQIVEGLKYLHS---LGIIHRDLKLG  147 (592)
T ss_pred             HhcCCCcEEeeeeEeecCCceEEEEEecCCccHHHHHHh--cCCCCcHHHHHHHHHHHHHHHHHHh---cCceecccchh
Confidence            578999999999999999999999999999999999964  3589999999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      |++++++.++||+|||++...                  |+.+.....+..+||||+||++|.+++|..||....
T Consensus       148 NlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~  222 (592)
T KOG0575|consen  148 NLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKT  222 (592)
T ss_pred             heeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccch
Confidence            999999999999999998643                  333445567788999999999999999988887554

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=194.27  Aligned_cols=133  Identities=26%  Similarity=0.262  Sum_probs=120.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||+||+++-.|++...+|+|+||+.+|.|...+.+.  +.+++..++.++..|+.|+.|||+   .+|+|||+||
T Consensus        79 L~~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~hL~~e--g~F~E~~arfYlaEi~lAL~~LH~---~gIiyRDlKP  153 (357)
T KOG0598|consen   79 LSKIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQRE--GRFSEDRARFYLAEIVLALGYLHS---KGIIYRDLKP  153 (357)
T ss_pred             HHhCCCCcEeeeEEecccCCeEEEEEeccCCccHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHHh---CCeeeccCCH
Confidence            45789999999999999999999999999999999999543  588999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +|||++..|.++++|||++.                  ++|+.+....|+..+|+||+|+++|||+++..|+..+.
T Consensus       154 ENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~  229 (357)
T KOG0598|consen  154 ENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAED  229 (357)
T ss_pred             HHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCcc
Confidence            99999999999999999864                  34555667789999999999999999999988887654

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-34  Score=189.33  Aligned_cols=133  Identities=24%  Similarity=0.246  Sum_probs=120.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.+.||+++++.+.|.+.++++|||||.++|.|.+++++.  +++++..++.++.+|+.|+.|||+   .++++||+||
T Consensus        98 L~~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~--~rF~e~~arFYAAeivlAleylH~---~~iiYRDLKP  172 (355)
T KOG0616|consen   98 LKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKS--GRFSEPHARFYAAEIVLALEYLHS---LDIIYRDLKP  172 (355)
T ss_pred             HhhccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHHh---cCeeeccCCh
Confidence            56789999999999999999999999999999999999654  489999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDENWVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +|||++.+|-.|++|||++.               ++|+.+..+.++.++|+|||||++|||+.|..||-..+
T Consensus       173 ENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~  245 (355)
T KOG0616|consen  173 ENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDN  245 (355)
T ss_pred             HHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCC
Confidence            99999999999999999874               45556677889999999999999999999888876543

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-34  Score=200.27  Aligned_cols=132  Identities=27%  Similarity=0.380  Sum_probs=118.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.|+|+||+.|.|+|.+...+|||||||..|.|...++.+  ..+.-.....+..+||.++.|||.   ..|+|||||.
T Consensus       166 LRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~--~~itp~llv~Wsk~IA~GM~YLH~---hKIIHRDLKS  240 (904)
T KOG4721|consen  166 LRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAG--RPITPSLLVDWSKGIAGGMNYLHL---HKIIHRDLKS  240 (904)
T ss_pred             HHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhcc--CccCHHHHHHHHHHhhhhhHHHHH---hhHhhhccCC
Confidence            57899999999999999999999999999999999999544  467777888999999999999998   8899999999


Q ss_pred             CcEEEcCCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      .|||++.+..+||+|||...                 ++|+.+..++.+.|+|||||||++|||+|+..|....
T Consensus       241 PNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV  314 (904)
T KOG4721|consen  241 PNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV  314 (904)
T ss_pred             CceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcccc
Confidence            99999999999999999764                 4556677788899999999999999999988776544

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.98  E-value=5.2e-33  Score=194.57  Aligned_cols=132  Identities=22%  Similarity=0.275  Sum_probs=115.2

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      .+| .||.|++++-.|.+...+|+|+||+++|+|.+++.+.  +.|++.....++.+|+.|+.|||+   +||+||||||
T Consensus       128 ~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i~K~--Gsfde~caR~YAAeIldAleylH~---~GIIHRDlKP  202 (604)
T KOG0592|consen  128 TQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLIKKY--GSFDETCARFYAAEILDALEYLHS---NGIIHRDLKP  202 (604)
T ss_pred             HHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHh---cCceeccCCh
Confidence            345 7999999999999999999999999999999999543  589999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc-------------------------------cCCCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR-------------------------------ILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~-------------------------------~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +|||+++++.++++|||.+...++.                               +.....+..+|+|+|||++|+|+.
T Consensus       203 ENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmla  282 (604)
T KOG0592|consen  203 ENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLA  282 (604)
T ss_pred             hheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhc
Confidence            9999999999999999987543322                               222344678999999999999999


Q ss_pred             ccCCCCccc
Q 041845          130 LPMAENEQE  138 (143)
Q Consensus       130 ~~~~~~~~~  138 (143)
                      |..||...+
T Consensus       283 G~PPFra~N  291 (604)
T KOG0592|consen  283 GQPPFRAAN  291 (604)
T ss_pred             CCCCCcccc
Confidence            988887554

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=2.1e-32  Score=189.92  Aligned_cols=135  Identities=50%  Similarity=0.701  Sum_probs=115.8

Q ss_pred             CCCCCCCCcceeeEEeecCC-chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~-~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |++++|||+|+++|+|.+.+ ..++|+||+++|+|.+.+.......++|..+.+|+.++|.|+.|||......|+|||+|
T Consensus       125 ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiK  204 (361)
T KOG1187|consen  125 LSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIK  204 (361)
T ss_pred             HhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCC
Confidence            46789999999999999888 49999999999999999965432278999999999999999999998555579999999


Q ss_pred             CCcEEEcCCCcccccccchhhcccc-c------------------cCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLRLLGS-R------------------ILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~~~-~------------------~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +.|||++.+..+|++|||++...+. .                  ...+..+.++||||||+++.|++++..+.+
T Consensus       205 ssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d  279 (361)
T KOG1187|consen  205 SSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVD  279 (361)
T ss_pred             HHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccC
Confidence            9999999999999999998766554 1                  122456789999999999999999875554

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=7.9e-33  Score=192.51  Aligned_cols=132  Identities=24%  Similarity=0.273  Sum_probs=115.8

Q ss_pred             CCCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.++ ||||+++++++.....+++||||+.+|+|.+++.+  ...+.+..+..++.|++.|+.|||+   .+|+||||||
T Consensus        74 ~~~~~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~~--~g~l~E~~ar~~F~Qlisav~y~H~---~gi~HRDLK~  148 (370)
T KOG0583|consen   74 RRLRSHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIVN--KGRLKEDEARKYFRQLISAVAYCHS---RGIVHRDLKP  148 (370)
T ss_pred             HHhccCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHHH--cCCCChHHHHHHHHHHHHHHHHHHh---CCEeeCCCCH
Confidence            5667 99999999999999999999999999999999966  4578889999999999999999998   9999999999


Q ss_pred             CcEEEcCC-Ccccccccchhhccc-c-----------------ccCCCC-CC-CcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDEN-WVAKHSRERQLRLLG-S-----------------RILPAK-LT-EKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~-~~~k~~~~~~~~~~~-~-----------------~~~~~~-~~-~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +|++++.+ +++|++|||++.... .                 .+.... |+ .++|+||+|+++|.|++|.+||....
T Consensus       149 ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~  227 (370)
T KOG0583|consen  149 ENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN  227 (370)
T ss_pred             HHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc
Confidence            99999999 999999999887541 1                 122333 54 78999999999999999999998754

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.9e-32  Score=190.34  Aligned_cols=130  Identities=23%  Similarity=0.288  Sum_probs=113.6

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |++|+||||+++.+...++  ..+|||+|||++ +|.-++ ......|++.+++.++.|++.|+.|||+   ++++||||
T Consensus       170 Lr~l~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl-~~p~vkft~~qIKc~mkQLl~Gl~~cH~---~gvlHRDI  244 (560)
T KOG0600|consen  170 LRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLL-SSPGVKFTEPQIKCYMKQLLEGLEYCHS---RGVLHRDI  244 (560)
T ss_pred             HHhcCCCcccceeeEEEecCCceEEEEEecccc-hhhhhh-cCCCcccChHHHHHHHHHHHHHHHHHhh---cCeeeccc
Confidence            5789999999999998876  689999999987 998888 4556789999999999999999999998   99999999


Q ss_pred             CCCcEEEcCCCcccccccchhhccccc-------------------cC-CCCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRLLGSR-------------------IL-PAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~~~~-------------------~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |..|||++.+|..|++|||++++....                   ++ ...|+.++|+||.|||+.||+++..-+.
T Consensus       245 K~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~  321 (560)
T KOG0600|consen  245 KGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQ  321 (560)
T ss_pred             cccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcC
Confidence            999999999999999999999844322                   12 3478999999999999999999765544

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=9.8e-33  Score=191.49  Aligned_cols=135  Identities=24%  Similarity=0.312  Sum_probs=120.0

Q ss_pred             CCCCCCCCcceeeEEeecCCc-hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKE-MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~-~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +++++|||||.+++.|..++. ++|+|+||++|++.+.+.+..+..+++..+..++.|++.|+.|||+   +.|+|||+|
T Consensus        57 is~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~---~~iLHRDlK  133 (426)
T KOG0589|consen   57 LSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHE---NRVLHRDLK  133 (426)
T ss_pred             HHhccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh---hhhhcccch
Confidence            467899999999999998877 9999999999999999977767889999999999999999999997   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhccccc------------------cCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           80 STNILLDENWVAKHSRERQLRLLGSR------------------ILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~~~~------------------~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +.||+++++..++++|||++....+.                  ..+.+|..|+||||+||++|||++...+|...+
T Consensus       134 ~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~  210 (426)
T KOG0589|consen  134 CANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN  210 (426)
T ss_pred             hhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc
Confidence            99999999999999999988643332                  345688999999999999999999777776554

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.97  E-value=7.7e-33  Score=182.69  Aligned_cols=132  Identities=23%  Similarity=0.302  Sum_probs=113.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+|+|.++++|.....+++|+|||+. ++.+.+... ....+....+++++|++.|+.|+|+   ++++|||+||
T Consensus        55 LKqLkH~NLVnLiEVFrrkrklhLVFE~~dh-TvL~eLe~~-p~G~~~~~vk~~l~Q~l~ai~~cHk---~n~IHRDIKP  129 (396)
T KOG0593|consen   55 LKQLKHENLVNLIEVFRRKRKLHLVFEYCDH-TVLHELERY-PNGVPSELVKKYLYQLLKAIHFCHK---NNCIHRDIKP  129 (396)
T ss_pred             HHhcccchHHHHHHHHHhcceeEEEeeecch-HHHHHHHhc-cCCCCHHHHHHHHHHHHHHhhhhhh---cCeecccCCh
Confidence            5789999999999999999999999999987 666666333 4567788899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc------------------cccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLLG------------------SRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~------------------~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++..+.+|++|||+++...                  +-+. ..+|.+.+||||+||++.||++|..-++..
T Consensus       130 ENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~  205 (396)
T KOG0593|consen  130 ENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGR  205 (396)
T ss_pred             hheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCc
Confidence            99999999999999999987433                  1122 358899999999999999999987666644

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-32  Score=198.57  Aligned_cols=127  Identities=34%  Similarity=0.498  Sum_probs=114.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC------------CCCCcHHHHHHHHHHHHHHHhHhhcC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH------------KPPLQWMWRLKICIGAARGLHYLHTG   68 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~lh~~   68 (143)
                      |..++|||||+++|+|..++.+++|+||+..|||..+++...            ..++...+.+.++.|||.|+.||.+ 
T Consensus       543 la~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~-  621 (774)
T KOG1026|consen  543 LAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS-  621 (774)
T ss_pred             HHhccCCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence            357899999999999999999999999999999999996331            1237788999999999999999997 


Q ss_pred             CCCCeeecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhccc
Q 041845           69 TRNTIIHRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        69 ~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                        ..++||||.++|+|++++-.+||+|||+.+                    ++|+.+...+++.++|||||||++||++
T Consensus       622 --~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIF  699 (774)
T KOG1026|consen  622 --HHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIF  699 (774)
T ss_pred             --CcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhh
Confidence              889999999999999999999999999875                    3456678889999999999999999999


Q ss_pred             cc
Q 041845          129 ML  130 (143)
Q Consensus       129 ~~  130 (143)
                      +.
T Consensus       700 sy  701 (774)
T KOG1026|consen  700 SY  701 (774)
T ss_pred             cc
Confidence            83

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=4.5e-32  Score=185.63  Aligned_cols=132  Identities=23%  Similarity=0.321  Sum_probs=116.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+.++.+|+.++.+.+||||..+|.|.+++.++.  .+++..+..+++||+.|+.|||.   ++++|||||.
T Consensus       107 MSsLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHk---nrVvHRDLKL  181 (668)
T KOG0611|consen  107 MSSLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHK---NRVVHRDLKL  181 (668)
T ss_pred             HhhcCCCceeehhhhhcCCceEEEEEEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhh---ccceecccch
Confidence            578999999999999999999999999999999999997654  78899999999999999999997   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc-----------------cCCCCC-CCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR-----------------ILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~-----------------~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++++|+.|||+..++...                 ..+.+| .+.+|.||+|+++|.+.+|-+||+..
T Consensus       182 ENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~  256 (668)
T KOG0611|consen  182 ENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR  256 (668)
T ss_pred             hheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc
Confidence            9999999999999999987643322                 122333 47899999999999999999999854

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1e-31  Score=181.67  Aligned_cols=132  Identities=26%  Similarity=0.282  Sum_probs=110.4

Q ss_pred             CCCCCCCCcceeeEEeecCC--chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK--EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~--~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |++++|||||+++|......  .++++|||+++|+|.+++.+..+ .+++..+..+..|++.|+.|||+   ++++|+||
T Consensus        68 L~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs---~g~vH~Di  143 (313)
T KOG0198|consen   68 LSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHS---KGIVHCDI  143 (313)
T ss_pred             HHhCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHh---CCEeccCc
Confidence            46788999999999754444  68899999999999999976655 79999999999999999999998   99999999


Q ss_pred             CCCcEEEcC-CCcccccccchhhcc---------------------ccccCCC-CCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDE-NWVAKHSRERQLRLL---------------------GSRILPA-KLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~-~~~~k~~~~~~~~~~---------------------~~~~~~~-~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||.|||++. ++.+|+.|||.+...                     |+..... ....++||||+||++.||+|+..|+.
T Consensus       144 K~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~  223 (313)
T KOG0198|consen  144 KPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWS  223 (313)
T ss_pred             ccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcch
Confidence            999999999 799999999965421                     1222211 12248999999999999999988877


Q ss_pred             c
Q 041845          136 E  136 (143)
Q Consensus       136 ~  136 (143)
                      +
T Consensus       224 ~  224 (313)
T KOG0198|consen  224 E  224 (313)
T ss_pred             h
Confidence            6

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=8.7e-32  Score=186.04  Aligned_cols=130  Identities=21%  Similarity=0.220  Sum_probs=113.2

Q ss_pred             CCCCC-CCCcceeeEEeecCC-chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLR-HRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~-h~niv~~~~~~~~~~-~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+++. ||||+++.+++.+.+ .+++|||||+. +|.+.++.+ +..|++..+..|+.||.+|+.|+|.   +|+.|||+
T Consensus        62 L~kln~hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk---~GfFHRDl  136 (538)
T KOG0661|consen   62 LRKLNPHPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHK---HGFFHRDL  136 (538)
T ss_pred             HHhcCCCCcchhhHHHhhccCceEeeeHHhhhh-hHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHh---cCcccccC
Confidence            46787 999999999998877 89999999976 999999766 7799999999999999999999997   99999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc-----------------cccc-cCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRL-----------------LGSR-ILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~-~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+|||+.....+|++|||+++-                 +|+. +....|+.+.|+||+||+++|+.+...-|+
T Consensus       137 KPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFP  211 (538)
T KOG0661|consen  137 KPENILISGNDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFP  211 (538)
T ss_pred             ChhheEecccceeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999862                 2222 235678999999999999999887544444

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.97  E-value=2.1e-31  Score=186.20  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=115.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ...++|+||+++-.|.++.++|+||||.+||++..++...  ..+++.++..++.+++.|+..+|+   .|++||||||+
T Consensus       196 ~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~~~--~~L~e~~arfYiaE~vlAI~~iH~---~gyIHRDIKPd  270 (550)
T KOG0605|consen  196 AEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLMRK--DTLTEDWARFYIAETVLAIESIHQ---LGYIHRDIKPD  270 (550)
T ss_pred             hhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHHhc--CcCchHHHHHHHHHHHHHHHHHHH---cCcccccCChh
Confidence            3467899999999999999999999999999999999654  488999999999999999999997   99999999999


Q ss_pred             cEEEcCCCcccccccchhh-------------------------------------------------------------
Q 041845           82 NILLDENWVAKHSRERQLR-------------------------------------------------------------  100 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~-------------------------------------------------------------  100 (143)
                      |+|++..|.+|++|||++.                                                             
T Consensus       271 NlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVG  350 (550)
T KOG0605|consen  271 NLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVG  350 (550)
T ss_pred             heeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccC
Confidence            9999999999999999763                                                             


Q ss_pred             ----ccccccCCCCCCCcccchhhhhhhhccccccCCCCcccc
Q 041845          101 ----LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQEV  139 (143)
Q Consensus       101 ----~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~~  139 (143)
                          ++|+.+.+..|+...|+||+||++|||+.|..||..+..
T Consensus       351 TPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp  393 (550)
T KOG0605|consen  351 TPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETP  393 (550)
T ss_pred             CccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCH
Confidence                111113344677889999999999999999888886643

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.6e-31  Score=186.39  Aligned_cols=131  Identities=18%  Similarity=0.139  Sum_probs=113.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.++...++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        55 l~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~---~givHrDlkp  129 (377)
T cd05629          55 LAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVHK---LGFIHRDIKP  129 (377)
T ss_pred             HHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCH
Confidence            35679999999999999999999999999999999988543  467888889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------------------------------------------------
Q 041845           81 TNILLDENWVAKHSRERQLR------------------------------------------------------------  100 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------------------------------------------------  100 (143)
                      +||+++.++.++++|||++.                                                            
T Consensus       130 ~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (377)
T cd05629         130 DNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTV  209 (377)
T ss_pred             HHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccC
Confidence            99999999999999998653                                                            


Q ss_pred             -----ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845          101 -----LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       101 -----~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                           .+|+.+....++.++|+||+||++|||+++..|+..
T Consensus       210 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~  250 (377)
T cd05629         210 GTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCS  250 (377)
T ss_pred             CCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCC
Confidence                 122223345678899999999999999999888754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=3e-31  Score=185.23  Aligned_cols=131  Identities=16%  Similarity=0.131  Sum_probs=113.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|+||+++++.+.+...+++||||+++|+|.+.+.+.  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        56 ~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~---~givHrDlKp~  130 (363)
T cd05628          56 VEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQ---LGFIHRDIKPD  130 (363)
T ss_pred             HhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHH
Confidence            4678999999999999999999999999999999998543  467889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-----------------------------------------------------cccccCC
Q 041845           82 NILLDENWVAKHSRERQLRL-----------------------------------------------------LGSRILP  108 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-----------------------------------------------------~~~~~~~  108 (143)
                      ||+++.++.++++|||++..                                                     +|+.+..
T Consensus       131 NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~  210 (363)
T cd05628         131 NLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQ  210 (363)
T ss_pred             HeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcC
Confidence            99999999999999997532                                                     2223334


Q ss_pred             CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845          109 AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       109 ~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ..++.++|+|||||++|||+++..|+...
T Consensus       211 ~~~~~~~DvwSlGvil~ell~G~~Pf~~~  239 (363)
T cd05628         211 TGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (363)
T ss_pred             CCCCCchhhhhhHHHHHHHHhCCCCCCCC
Confidence            56788999999999999999998887643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-31  Score=187.97  Aligned_cols=125  Identities=34%  Similarity=0.461  Sum_probs=112.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++|++.....++++||+|.+|+|.+++++.+. .++..+...++.+.+.|+.|||+   ++++||||..
T Consensus       215 Mr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~---k~~IHRDIAA  290 (474)
T KOG0194|consen  215 MRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHS---KNCIHRDIAA  290 (474)
T ss_pred             HHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHH---CCCcchhHhH
Confidence            4679999999999999999999999999999999999976543 68889999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +|+|++.++.+|++|||+++..                  |+.+....++.++|||||||++||+.+
T Consensus       291 RNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~  357 (474)
T KOG0194|consen  291 RNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFE  357 (474)
T ss_pred             HHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeec
Confidence            9999999999999999987532                  344455678999999999999999988

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.97  E-value=7.9e-31  Score=175.03  Aligned_cols=130  Identities=24%  Similarity=0.287  Sum_probs=111.1

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |.+++|||||.+..+...+  +.+|+|||||++ +|.+.+. ....+|...+++.++.|++.|++|||+   +.|+||||
T Consensus       129 Ll~~~H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLksl~d-~m~q~F~~~evK~L~~QlL~glk~lH~---~wilHRDL  203 (419)
T KOG0663|consen  129 LLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKSLME-TMKQPFLPGEVKTLMLQLLRGLKHLHD---NWILHRDL  203 (419)
T ss_pred             HHhcCCCCeeeeEEEEeccccceeeeeHHHHHh-hHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHhh---ceeEeccc
Confidence            3567899999999988754  479999999987 9999884 344688899999999999999999997   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcccccc-------------------CCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRLLGSRI-------------------LPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~~~~~-------------------~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |++|+|++.+|..|++|||+++-+++..                   -...|+.++|+||+|||+.|++++..-++
T Consensus       204 K~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~  279 (419)
T KOG0663|consen  204 KTSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFP  279 (419)
T ss_pred             chhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCC
Confidence            9999999999999999999998655441                   23578999999999999999988544433

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.97  E-value=4.3e-31  Score=185.18  Aligned_cols=132  Identities=18%  Similarity=0.165  Sum_probs=113.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+||+++++.+.+++.++++|||+++++|.+++.+.  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        55 l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp  129 (376)
T cd05598          55 LAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHK---MGFIHRDIKP  129 (376)
T ss_pred             HHhCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCH
Confidence            35689999999999999999999999999999999998543  367788888999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------------------------------------------------
Q 041845           81 TNILLDENWVAKHSRERQLR------------------------------------------------------------  100 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------------------------------------------------  100 (143)
                      +||+++.++.++++|||++.                                                            
T Consensus       130 ~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  209 (376)
T cd05598         130 DNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPN  209 (376)
T ss_pred             HHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCcc
Confidence            99999999999999999742                                                            


Q ss_pred             -ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845          101 -LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       101 -~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                       .+|+.+....++.++|+||+||++|||+++..|+...
T Consensus       210 y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  247 (376)
T cd05598         210 YIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAD  247 (376)
T ss_pred             ccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCC
Confidence             1233334456788999999999999999998887644

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.97  E-value=4.6e-31  Score=182.94  Aligned_cols=132  Identities=18%  Similarity=0.188  Sum_probs=114.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..+++|||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus        85 l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp  159 (340)
T PTZ00426         85 LNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQS---LNIVYRDLKP  159 (340)
T ss_pred             HHhCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCH
Confidence            35689999999999999999999999999999999998554  367888899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..               +|+.+....++.++|+||+||++|||+++..|+...
T Consensus       160 ~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  231 (340)
T PTZ00426        160 ENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN  231 (340)
T ss_pred             HHEEECCCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC
Confidence            999999999999999997642               233334456788999999999999999988887643

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=8.7e-31  Score=180.40  Aligned_cols=132  Identities=20%  Similarity=0.169  Sum_probs=114.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..+++|||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        49 l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~---~~ivHrDlkp  123 (323)
T cd05571          49 LQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHS---CDVVYRDLKL  123 (323)
T ss_pred             HHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCH
Confidence            35689999999999999999999999999999999888543  467888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..                  +|+.+....++.++|+||+||++|||+++..|+...
T Consensus       124 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  198 (323)
T cd05571         124 ENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (323)
T ss_pred             HHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCC
Confidence            999999999999999996531                  233344556788999999999999999998887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.97  E-value=5.5e-31  Score=185.02  Aligned_cols=132  Identities=19%  Similarity=0.163  Sum_probs=113.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+||+++++.+.+++.+++||||+++|+|.+.+.+.  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        55 l~~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH~---~~ivHrDlKp  129 (382)
T cd05625          55 LAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHK---MGFIHRDIKP  129 (382)
T ss_pred             HHhCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCH
Confidence            35679999999999999999999999999999999988543  367788889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------------------------------------------------
Q 041845           81 TNILLDENWVAKHSRERQLR------------------------------------------------------------  100 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------------------------------------------------  100 (143)
                      +||+++.++.++++|||++.                                                            
T Consensus       130 ~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (382)
T cd05625         130 DNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLV  209 (382)
T ss_pred             HHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc
Confidence            99999999999999999642                                                            


Q ss_pred             -----ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845          101 -----LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       101 -----~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                           .+|+.+....++.++|+||+||++|||+++..|+...
T Consensus       210 gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  251 (382)
T cd05625         210 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             cCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCC
Confidence                 1233334556788999999999999999998887643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=3.7e-31  Score=189.03  Aligned_cols=134  Identities=22%  Similarity=0.255  Sum_probs=117.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+-+.|||+++++++|.+...+|+|.||+++|.|++++.++  +++++..+..++.||+.|+.|||.   .+++|||+||
T Consensus        66 MkLi~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv~k--G~l~e~eaa~ff~QIi~gv~yCH~---~~icHRDLKp  140 (786)
T KOG0588|consen   66 MKLIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLVRK--GPLPEREAAHFFRQILDGVSYCHA---FNICHRDLKP  140 (786)
T ss_pred             HHHhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHhh---hcceeccCCc
Confidence            45679999999999999999999999999999999999665  478888889999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-----------------ccccCCCCCC-CcccchhhhhhhhccccccCCCCcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLT-EKSDVYSFGVLCARPAMLPMAENEQEV  139 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~-~~~Di~s~G~~~~~~~~~~~~~~~~~~  139 (143)
                      +|+|++.++++|+.|||.+.+.                 |+-+.+.+|. .++||||.|||+|.+++|.+||+..+.
T Consensus       141 ENlLLd~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNi  217 (786)
T KOG0588|consen  141 ENLLLDVKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNI  217 (786)
T ss_pred             hhhhhhcccCEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccH
Confidence            9999999999999999987532                 2334445553 689999999999999999999997654

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=8.2e-31  Score=183.01  Aligned_cols=132  Identities=17%  Similarity=0.141  Sum_probs=113.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        55 l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~---~~ivH~Dlkp  129 (364)
T cd05599          55 LAEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHK---LGYIHRDIKP  129 (364)
T ss_pred             HHhCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCH
Confidence            35678999999999999999999999999999999998543  368889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc--------------------------------------------------------ccc
Q 041845           81 TNILLDENWVAKHSRERQLRL--------------------------------------------------------LGS  104 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~--------------------------------------------------------~~~  104 (143)
                      +||+++.++.++++|||.+..                                                        +|+
T Consensus       130 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  209 (364)
T cd05599         130 DNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPE  209 (364)
T ss_pred             HHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHH
Confidence            999999999999999986531                                                        222


Q ss_pred             ccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845          105 RILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       105 ~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      .+....++.++|+||+||++|||+++..|+...
T Consensus       210 ~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~  242 (364)
T cd05599         210 VFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSD  242 (364)
T ss_pred             HHcCCCCCCeeeeecchhHHHHhhcCCCCCCCC
Confidence            234456788999999999999999988887643

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=1.1e-30  Score=180.38  Aligned_cols=132  Identities=20%  Similarity=0.190  Sum_probs=114.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..+++|||+++++|.+.+.+.  ..+++.....++.|++.|+.|||+   .+++|+||+|
T Consensus        72 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp  146 (329)
T PTZ00263         72 LMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLHS---KDIIYRDLKP  146 (329)
T ss_pred             HHhCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCH
Confidence            35689999999999999999999999999999999988543  367788888999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+..               +|+.+....++.++|+|||||++|+|+++..|+...
T Consensus       147 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  218 (329)
T PTZ00263        147 ENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDD  218 (329)
T ss_pred             HHEEECCCCCEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCC
Confidence            999999999999999997542               333345566788999999999999999988887543

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=9.2e-31  Score=196.21  Aligned_cols=133  Identities=29%  Similarity=0.399  Sum_probs=116.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC-----CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN-----HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |+.++|||||+++|++.+....+|++|||++|+|..++++.     ....+.......++.+||.++.||++   +.++|
T Consensus       749 m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~---~~fvH  825 (1025)
T KOG1095|consen  749 MSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLES---KHFVH  825 (1025)
T ss_pred             HhcCCCcceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHh---CCCcC
Confidence            57899999999999999999999999999999999999654     13466778889999999999999997   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhcccc-ccCCC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAE  134 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~  134 (143)
                      |||..+|+|++....+|+.|||+++                    ++||.+....++.++|||||||++||+++ |..|.
T Consensus       826 RDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY  905 (1025)
T KOG1095|consen  826 RDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPY  905 (1025)
T ss_pred             cchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCC
Confidence            9999999999999999999999986                    23444556789999999999999999998 44444


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      +.
T Consensus       906 ~~  907 (1025)
T KOG1095|consen  906 PS  907 (1025)
T ss_pred             CC
Confidence            43

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.96  E-value=2.3e-30  Score=178.38  Aligned_cols=132  Identities=20%  Similarity=0.183  Sum_probs=113.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++...+..++||||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus        49 l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp  123 (323)
T cd05595          49 LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKL  123 (323)
T ss_pred             HHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCH
Confidence            35689999999999999999999999999999998888543  367889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..                  +|+......++.++|+|||||++|+|+++..|+...
T Consensus       124 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  198 (323)
T cd05595         124 ENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (323)
T ss_pred             HHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCC
Confidence            999999999999999986531                  233344556788999999999999999988887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.96  E-value=1.6e-30  Score=182.65  Aligned_cols=131  Identities=18%  Similarity=0.166  Sum_probs=112.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++.+++.++++|||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        55 l~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~~LH~---~givHrDlKp  129 (381)
T cd05626          55 LAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHK---MGFIHRDIKP  129 (381)
T ss_pred             HHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCcH
Confidence            35679999999999999999999999999999999988543  367888889999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------------------------------------------------
Q 041845           81 TNILLDENWVAKHSRERQLR------------------------------------------------------------  100 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------------------------------------------------  100 (143)
                      +||+++.++.++++|||++.                                                            
T Consensus       130 ~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (381)
T cd05626         130 DNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLV  209 (381)
T ss_pred             HHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcccccccccccccccc
Confidence            99999999999999999642                                                            


Q ss_pred             -----ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845          101 -----LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       101 -----~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                           .+|+.+....++.++||||+||++|||+++..|+..
T Consensus       210 gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~  250 (381)
T cd05626         210 GTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLA  250 (381)
T ss_pred             CCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcC
Confidence                 122233345678899999999999999998888754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.96  E-value=2.1e-30  Score=180.85  Aligned_cols=131  Identities=16%  Similarity=0.163  Sum_probs=113.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .+++|+||+++++.+.+++.+++||||+++++|.+.+.+.  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        56 ~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~~L~~lH~---~givHrDLkp~  130 (360)
T cd05627          56 VEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQ---LGFIHRDIKPD  130 (360)
T ss_pred             HhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEccCCCHH
Confidence            4678999999999999999999999999999999998543  367888899999999999999998   99999999999


Q ss_pred             cEEEcCCCcccccccchhh-----------------------------------------------------ccccccCC
Q 041845           82 NILLDENWVAKHSRERQLR-----------------------------------------------------LLGSRILP  108 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~-----------------------------------------------------~~~~~~~~  108 (143)
                      ||+++.++.++++|||.+.                                                     .+|+.+..
T Consensus       131 NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~  210 (360)
T cd05627         131 NLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQ  210 (360)
T ss_pred             HEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcC
Confidence            9999999999999998643                                                     12233344


Q ss_pred             CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845          109 AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       109 ~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ..++.++|+||+||++|||+++..|+...
T Consensus       211 ~~~~~~~DiwSlGvilyel~tG~~Pf~~~  239 (360)
T cd05627         211 TGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (360)
T ss_pred             CCCCCcceeccccceeeecccCCCCCCCC
Confidence            56788999999999999999988887543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=2.9e-30  Score=177.76  Aligned_cols=131  Identities=22%  Similarity=0.187  Sum_probs=113.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+.+++..+++|||+++++|...+...  ..+++.....++.|++.|+.|||+   .+++||||+|+
T Consensus        51 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~givH~dikp~  125 (323)
T cd05575          51 KNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHS---LNIIYRDLKPE  125 (323)
T ss_pred             hhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHH
Confidence            4689999999999999999999999999999999888543  367888889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+.                  .+|+.+....++.++|+|||||++|+|+++..|+...
T Consensus       126 NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~  199 (323)
T cd05575         126 NILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (323)
T ss_pred             HeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCC
Confidence            9999999999999999653                  2233344556788999999999999999988887643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.1e-30  Score=177.74  Aligned_cols=132  Identities=21%  Similarity=0.165  Sum_probs=114.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..+++|||+++++|.+.+...  ..+++.....++.|++.|+.|||+   .+++||||+|
T Consensus        47 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~HrDlkp  121 (312)
T cd05585          47 LAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQRE--GRFDLSRARFYTAELLCALENLHK---FNVIYRDLKP  121 (312)
T ss_pred             HHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCH
Confidence            35679999999999999999999999999999999988543  467888899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       122 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~  196 (312)
T cd05585         122 ENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDE  196 (312)
T ss_pred             HHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCC
Confidence            999999999999999997642                  222234456788999999999999999998887643

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.96  E-value=4.7e-30  Score=176.86  Aligned_cols=132  Identities=19%  Similarity=0.171  Sum_probs=112.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++..++..++||||+++++|...+...  ..+++..+..++.|++.|+.|||+  ..+++||||||+
T Consensus        50 ~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~--~~~ivHrDikp~  125 (325)
T cd05594          50 QNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLE  125 (325)
T ss_pred             HhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCCCC
Confidence            4678999999999999999999999999999999888543  367888999999999999999995  268999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       126 NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~  199 (325)
T cd05594         126 NLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  199 (325)
T ss_pred             eEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCC
Confidence            99999999999999996532                  223233456788999999999999999998887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=2.6e-30  Score=176.25  Aligned_cols=95  Identities=25%  Similarity=0.189  Sum_probs=88.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||.++.++..|+++...|++||||++|+|....+++.+..+++..+..++..++.|+.|||.   .||+.|||||
T Consensus       131 L~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHm---lGivYRDLKP  207 (459)
T KOG0610|consen  131 LSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHM---LGIVYRDLKP  207 (459)
T ss_pred             HHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHh---hceeeccCCc
Confidence            5678999999999999999999999999999999999988888999999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccch
Q 041845           81 TNILLDENWVAKHSRERQ   98 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~   98 (143)
                      +|||+.++|.+-++||.+
T Consensus       208 ENILvredGHIMLsDFDL  225 (459)
T KOG0610|consen  208 ENILVREDGHIMLSDFDL  225 (459)
T ss_pred             ceeEEecCCcEEeeeccc
Confidence            999999888777777654

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=8.7e-31  Score=178.05  Aligned_cols=132  Identities=20%  Similarity=0.206  Sum_probs=114.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..+++|||+++++|.+++...  ..+++.....++.|++.|+.|||+   .+++|+||+|
T Consensus        55 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp  129 (291)
T cd05612          55 LKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLHS---KEIVYRDLKP  129 (291)
T ss_pred             HHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCH
Confidence            35789999999999999999999999999999999998543  367888889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..               +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       130 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~  201 (291)
T cd05612         130 ENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD  201 (291)
T ss_pred             HHeEECCCCCEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999997542               233344556788999999999999999988887643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.96  E-value=4.1e-30  Score=177.45  Aligned_cols=132  Identities=21%  Similarity=0.190  Sum_probs=113.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..++||||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        49 l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp  123 (328)
T cd05593          49 LKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHS---GKIVYRDLKL  123 (328)
T ss_pred             HHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCH
Confidence            35679999999999999999999999999999998888543  367888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       124 ~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~  198 (328)
T cd05593         124 ENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  198 (328)
T ss_pred             HHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCC
Confidence            999999999999999996532                  233334456788999999999999999998887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1.3e-30  Score=169.18  Aligned_cols=129  Identities=22%  Similarity=0.290  Sum_probs=112.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+.++++|...+.+.+|+||++. +|+..++.. ...+....++.++.++..+++|||+   +.|+|||+||
T Consensus        55 Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~t-dLe~vIkd~-~i~l~pa~iK~y~~m~LkGl~y~H~---~~IlHRDlKP  129 (318)
T KOG0659|consen   55 LQELKHPNIIELIDVFPHKSNLSLVFEFMPT-DLEVVIKDK-NIILSPADIKSYMLMTLKGLAYCHS---KWILHRDLKP  129 (318)
T ss_pred             HHHccCcchhhhhhhccCCCceEEEEEeccc-cHHHHhccc-ccccCHHHHHHHHHHHHHHHHHHHh---hhhhcccCCc
Confidence            5678999999999999999999999999976 999999544 4577888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc-------------------cCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR-------------------ILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~-------------------~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +|+|++++|..|+.|||+++..++.                   +-...|...+|+||.||++.|++.+-.-+
T Consensus       130 nNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~f  202 (318)
T KOG0659|consen  130 NNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFF  202 (318)
T ss_pred             cceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCC
Confidence            9999999999999999999866533                   22457888999999999999988754333

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.96  E-value=4.7e-30  Score=176.61  Aligned_cols=131  Identities=21%  Similarity=0.165  Sum_probs=112.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+.+.+..+++|||+++++|...+...  ..+.+.....++.|++.|+.|||+   .+++||||+|+
T Consensus        51 ~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~---~~ivH~Dlkp~  125 (321)
T cd05603          51 KNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHS---LNIIYRDLKPE  125 (321)
T ss_pred             HhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHH
Confidence            5679999999999999999999999999999998887543  367788888899999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       126 NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (321)
T cd05603         126 NILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (321)
T ss_pred             HeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC
Confidence            99999999999999996532                  222234456788999999999999999988887543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=4e-30  Score=177.14  Aligned_cols=132  Identities=21%  Similarity=0.187  Sum_probs=113.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..+++|||+++++|.+.+.+.  ..+.+.....++.|++.|+.|||+   .+++|+||+|
T Consensus        54 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp  128 (323)
T cd05584          54 LEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQ---QGIIYRDLKP  128 (323)
T ss_pred             HHhCCCCchhceeeEEecCCeEEEEEeCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            45789999999999999999999999999999999988543  356778888899999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+.                  .+|+......++.++|+||+||++|||+++..|+...
T Consensus       129 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~  203 (323)
T cd05584         129 ENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAE  203 (323)
T ss_pred             HHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCC
Confidence            99999999999999998653                  2233334455678999999999999999998887643

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=6.6e-30  Score=175.77  Aligned_cols=133  Identities=26%  Similarity=0.291  Sum_probs=116.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||++++.+|..++.+|+||.|+.+|++.+++...-...+++..+..++++++.|+.|||.   +|.+|||+|+
T Consensus        78 msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~---~G~IHRdvKA  154 (516)
T KOG0582|consen   78 MSLIDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQ---NGHIHRDVKA  154 (516)
T ss_pred             hhhcCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHh---cCceeccccc
Confidence            4678999999999999999999999999999999999977666678999999999999999999997   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh----------------------ccccccC--CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLR----------------------LLGSRIL--PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~----------------------~~~~~~~--~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .|||++.+|.++++|||...                      ++|+...  ...|+.|+||||||++..|+++|..|+..
T Consensus       155 gnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k  234 (516)
T KOG0582|consen  155 GNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSK  234 (516)
T ss_pred             ccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCccc
Confidence            99999999999999996532                      1122211  23689999999999999999998888763

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.96  E-value=5.2e-30  Score=176.68  Aligned_cols=131  Identities=21%  Similarity=0.168  Sum_probs=113.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+..++..+++|||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        51 ~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~---~givH~Dlkp~  125 (325)
T cd05604          51 KNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHS---INIVYRDLKPE  125 (325)
T ss_pred             HhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHH
Confidence            4678999999999999999999999999999998888543  467888999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       126 NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~  199 (325)
T cd05604         126 NILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCR  199 (325)
T ss_pred             HeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCC
Confidence            99999999999999996532                  233344556788999999999999999988877543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=7.9e-31  Score=184.19  Aligned_cols=129  Identities=24%  Similarity=0.334  Sum_probs=114.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+..+|+|||.+++.|..++.+|+||||+++|+|.+.+...   .+++.++..+++.++.|+.|||.   ++|+|||||.
T Consensus       324 m~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt~~---~~~E~qIA~Icre~l~aL~fLH~---~gIiHrDIKS  397 (550)
T KOG0578|consen  324 MRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVTKT---RMTEGQIAAICREILQGLKFLHA---RGIIHRDIKS  397 (550)
T ss_pred             HHhccchHHHHHHHHhcccceeEEEEeecCCCchhhhhhcc---cccHHHHHHHHHHHHHHHHHHHh---cceeeecccc
Confidence            56789999999999999999999999999999999988543   58899999999999999999997   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      .|||++.++.+|++|||++.                  ++|+......|.+++||||||++.+||.-|..|+=
T Consensus       398 DnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYl  470 (550)
T KOG0578|consen  398 DNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYL  470 (550)
T ss_pred             ceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCcc
Confidence            99999999999999999875                  23334455678999999999999999998766654

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.96  E-value=1e-30  Score=184.53  Aligned_cols=132  Identities=22%  Similarity=0.237  Sum_probs=117.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+.++++|+++..+|+|+||+.+ +|..++..  ...+++..+..++.+++.|+.|||+   ++|.|||+||
T Consensus        55 ~r~lkHpniv~m~esfEt~~~~~vVte~a~g-~L~~il~~--d~~lpEe~v~~~a~~LVsaL~yLhs---~rilhrd~kP  128 (808)
T KOG0597|consen   55 LRSLKHPNIVEMLESFETSAHLWVVTEYAVG-DLFTILEQ--DGKLPEEQVRAIAYDLVSALYYLHS---NRILHRDMKP  128 (808)
T ss_pred             HHhcCCcchhhHHHhhcccceEEEEehhhhh-hHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHh---cCcccccCCc
Confidence            3678999999999999999999999999976 99999944  4588999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      .|||+..++..|++|||+++-                  +|+......|+..+|.||+||++||+..|..||-...
T Consensus       129 qniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s  204 (808)
T KOG0597|consen  129 QNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS  204 (808)
T ss_pred             ceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH
Confidence            999999999999999998763                  3344556788999999999999999999988876543

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.96  E-value=4.7e-30  Score=171.99  Aligned_cols=131  Identities=24%  Similarity=0.302  Sum_probs=110.7

Q ss_pred             CCCCCCCC-cceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCC--CCCcHHHHHHHHHHHHHHHhHhhcCCCC
Q 041845            1 LSNLRHRH-LVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHK--PPLQWMWRLKICIGAARGLHYLHTGTRN   71 (143)
Q Consensus         1 L~~l~h~n-iv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lh~~~~~   71 (143)
                      |+.++|+| |+++++++.+.+      .+++|+||.+. +|..++.....  ...+...++.+++|++.|+.|||+   +
T Consensus        64 lk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~---~  139 (323)
T KOG0594|consen   64 LKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHS---H  139 (323)
T ss_pred             HHHhCCCcceEEEEeeeeecccccccceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            46789999 999999998877      78999999976 99999965543  356667899999999999999998   9


Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccC
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      +|+||||||.|++++++|..|+.|||+++..                  |+.+++ ..|+...||||+||+++||+++..
T Consensus       140 ~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~  219 (323)
T KOG0594|consen  140 GILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRP  219 (323)
T ss_pred             CeecccCCcceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCC
Confidence            9999999999999999999999999998632                  222333 368999999999999999999655


Q ss_pred             CCC
Q 041845          133 AEN  135 (143)
Q Consensus       133 ~~~  135 (143)
                      -|+
T Consensus       220 LFp  222 (323)
T KOG0594|consen  220 LFP  222 (323)
T ss_pred             CCC
Confidence            444

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.1e-30  Score=177.64  Aligned_cols=130  Identities=18%  Similarity=0.099  Sum_probs=113.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        56 ~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~  130 (333)
T cd05600          56 TTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALHE---LGYIHRDLKPE  130 (333)
T ss_pred             HhCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHH
Confidence            4678999999999999999999999999999999998543  367888889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+..               +|+.+....++.++|+||+||++|||+++..|+..
T Consensus       131 Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~  200 (333)
T cd05600         131 NFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSG  200 (333)
T ss_pred             HEEECCCCCEEEEeCcCCcccccccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCC
Confidence            99999999999999987642               23334455778999999999999999998887754

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.96  E-value=5e-30  Score=173.85  Aligned_cols=133  Identities=25%  Similarity=0.233  Sum_probs=114.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++.+++.+++..++++||+++++|.+.+.......+++.....++.|++.|+.|||+   .+++||||+|
T Consensus        54 l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp  130 (285)
T cd05631          54 LEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQR---ERIVYRDLKP  130 (285)
T ss_pred             HHhcCCCcEEEEEEEEccCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCH
Confidence            3567899999999999999999999999999999888755444567888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                 +|+.+....++.++|+||+||++|+|+++..|+..
T Consensus       131 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  203 (285)
T cd05631         131 ENILLDDRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRK  203 (285)
T ss_pred             HHEEECCCCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCC
Confidence            999999999999999987542                 23334455778899999999999999999888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=8.9e-30  Score=175.45  Aligned_cols=130  Identities=23%  Similarity=0.241  Sum_probs=112.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|...+..   ..+++.....++.|++.|+.|||+   .+++||||+|+
T Consensus        57 ~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrdlkp~  130 (324)
T cd05589          57 NSERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHE---NKIVYRDLKLD  130 (324)
T ss_pred             cccCCCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeEecCCCHH
Confidence            467899999999999999999999999999999887743   367889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+..                  +|+......++.++|+|||||++|+|+++..|+...
T Consensus       131 Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~  204 (324)
T cd05589         131 NLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGD  204 (324)
T ss_pred             HeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCC
Confidence            99999999999999986431                  233344556788999999999999999998887643

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-30  Score=182.78  Aligned_cols=128  Identities=30%  Similarity=0.460  Sum_probs=110.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |.+++||||+++.|+|..++.+++++||++.|+|.+++..+......-..-..++.||+.+++||-+   .+++|||+.+
T Consensus       589 LsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes---~nfVHrd~a~  665 (807)
T KOG1094|consen  589 LSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLES---LNFVHRDLAT  665 (807)
T ss_pred             HhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHh---hchhhccccc
Confidence            5688999999999999999999999999999999999976633333445567799999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh--c------------------cccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           81 TNILLDENWVAKHSRERQLR--L------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~--~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +|+|++.+..+|+.|||.++  +                  +.+.++-++++.++|+|+||+++||+++..
T Consensus       666 rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C  736 (807)
T KOG1094|consen  666 RNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLC  736 (807)
T ss_pred             cceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHH
Confidence            99999999999999999876  1                  223345678899999999999999988743

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=7.2e-30  Score=175.96  Aligned_cols=131  Identities=21%  Similarity=0.157  Sum_probs=112.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.+.+..+++|||+++++|.+.+...  ..+.......++.|++.|+.|||+   .+++||||||+
T Consensus        51 ~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~---~giiHrDlkp~  125 (325)
T cd05602          51 KNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPE  125 (325)
T ss_pred             HhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHH
Confidence            4678999999999999999999999999999999988543  356778888899999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       126 Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (325)
T cd05602         126 NILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (325)
T ss_pred             HeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCC
Confidence            99999999999999996531                  233344556788999999999999999988887643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=5.9e-30  Score=175.91  Aligned_cols=132  Identities=24%  Similarity=0.188  Sum_probs=113.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..++||||+++++|.+.+.+.  ..+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        52 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp  126 (318)
T cd05582          52 LAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKP  126 (318)
T ss_pred             HHhCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCH
Confidence            35789999999999999999999999999999999988543  367889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..                  +|+......++.++|+|||||++|+|+++..|+...
T Consensus       127 ~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~  201 (318)
T cd05582         127 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGK  201 (318)
T ss_pred             HHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCC
Confidence            999999999999999986542                  122233446688999999999999999998887643

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.3e-30  Score=166.95  Aligned_cols=134  Identities=25%  Similarity=0.277  Sum_probs=119.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.|+||||++++++|.++...|+++||.+.|++...++.+....+++.....+..|++.|+.|+|.   ++++|||+||+
T Consensus        77 s~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~---k~VIhRdiKpe  153 (281)
T KOG0580|consen   77 SHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHL---KRVIHRDIKPE  153 (281)
T ss_pred             cccCCccHHhhhhheeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhcc---CCcccCCCCHH
Confidence            468999999999999999999999999999999999987777789999999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhh----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           82 NILLDENWVAKHSRERQLR----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      |+|++..+..|+.|||-..                +.|+...+...+..+|+|++|+++||.+.+..||..+.
T Consensus       154 nlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~  226 (281)
T KOG0580|consen  154 NLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS  226 (281)
T ss_pred             HhccCCCCCeeccCCCceeecCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh
Confidence            9999999999999998543                23333445677889999999999999999888887664

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.96  E-value=6.4e-30  Score=178.99  Aligned_cols=130  Identities=20%  Similarity=0.210  Sum_probs=111.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.++...++||||+++|+|.+++...   .+++.++..++.|++.|+.|||+   .+++||||||+
T Consensus        98 ~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~---~~IvHrDLKp~  171 (370)
T cd05621          98 AFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHS---MGLIHRDVKPD  171 (370)
T ss_pred             HhCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHH
Confidence            4678999999999999999999999999999999988532   57788899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCC----CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILP----AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~----~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+...                   |+.+..    ..++.++|+||+||++|+|+++..|+...
T Consensus       172 NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         172 NMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             HEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence            999999999999999976422                   111111    12678999999999999999998887644

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=6.4e-30  Score=186.70  Aligned_cols=136  Identities=24%  Similarity=0.284  Sum_probs=112.7

Q ss_pred             CCCCC-CCCcceeeEEe-ec---C---CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLR-HRHLVSLIGHH-VE---N---KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~-h~niv~~~~~~-~~---~---~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      ||.|+ |+|||.|++.. ..   .   -...|.||||++|.|-+++..+....|.+.++++|+++++.|+.+||... .+
T Consensus        88 MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~-pP  166 (738)
T KOG1989|consen   88 MKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLK-PP  166 (738)
T ss_pred             HHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCC-Cc
Confidence            46675 99999999943 21   1   24679999999999999997666667999999999999999999999744 46


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhcc---------------------------ccc---cCCCCCCCcccchhhhh
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRLL---------------------------GSR---ILPAKLTEKSDVYSFGV  122 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~~---------------------------~~~---~~~~~~~~~~Di~s~G~  122 (143)
                      ++|||||.+|+|++.++..|++|||.+.-.                           ||.   +.+...+.|+|||||||
T Consensus       167 iIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGc  246 (738)
T KOG1989|consen  167 IIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGC  246 (738)
T ss_pred             cchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHH
Confidence            999999999999999999999999976421                           111   22456789999999999


Q ss_pred             hhhccccccCCCCcc
Q 041845          123 LCARPAMLPMAENEQ  137 (143)
Q Consensus       123 ~~~~~~~~~~~~~~~  137 (143)
                      ++|.+|++..||.+.
T Consensus       247 lLYkLCy~t~PFe~s  261 (738)
T KOG1989|consen  247 LLYKLCYFTTPFEES  261 (738)
T ss_pred             HHHHHHHhCCCcCcC
Confidence            999999988888876

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=1.4e-29  Score=175.19  Aligned_cols=131  Identities=28%  Similarity=0.358  Sum_probs=107.2

Q ss_pred             CC-CCCCcceeeEEeecC-CchhhhHhhhcCCCHHHHhhcCC--------------------------------------
Q 041845            3 NL-RHRHLVSLIGHHVEN-KEMILVYDCMARGTLRDHLYNNH--------------------------------------   42 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~~--------------------------------------   42 (143)
                      .+ +||||+++++.+... ..++++|||+++|+|.+++....                                      
T Consensus        66 ~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (338)
T cd05102          66 HIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVL  145 (338)
T ss_pred             HhccCcceeeEEeEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCcc
Confidence            45 799999999988764 45789999999999999885421                                      


Q ss_pred             ----------------------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           43 ----------------------KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        43 ----------------------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                                            ...+.+.....++.|++.|+.|||+   .+++||||||+||+++.++.++++|||.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~  222 (338)
T cd05102         146 FSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLAR  222 (338)
T ss_pred             ccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCccceEEEcCCCcEEEeeccccc
Confidence                                  1236667788899999999999998   899999999999999999999999999764


Q ss_pred             c--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845          101 L--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus       101 ~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .                    +|+......++.++|||||||++|||++ +..|+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~  279 (338)
T cd05102         223 DIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPG  279 (338)
T ss_pred             ccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCC
Confidence            2                    2333345567889999999999999986 6666553

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=1.1e-29  Score=182.79  Aligned_cols=133  Identities=19%  Similarity=0.225  Sum_probs=113.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++.+..++..++||||+++++|.+.+...  ....+++..+..++.|++.|+.|+|+   .+++||||
T Consensus       119 l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~~ivHrDl  195 (478)
T PTZ00267        119 LAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHS---RKMMHRDL  195 (478)
T ss_pred             HHhCCCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCc
Confidence            45789999999999999999999999999999999877432  23467888889999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+||+++.++.++++|||++...                    |+......++.++|+||+||++|+|+++..|+..
T Consensus       196 kp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~  273 (478)
T PTZ00267        196 KSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKG  273 (478)
T ss_pred             CHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999876421                    2223345678899999999999999998777654

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=1.2e-29  Score=177.73  Aligned_cols=130  Identities=19%  Similarity=0.198  Sum_probs=110.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++...   .++...+..++.|++.|+.|||+   .+++||||||+
T Consensus        98 ~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp~  171 (371)
T cd05622          98 AFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPD  171 (371)
T ss_pred             HhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHH
Confidence            4578999999999999999999999999999999988543   47788888999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCC----CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILP----AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~----~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                   |+.+..    ..++.++|+||+||++|||+++..|+...
T Consensus       172 NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         172 NMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             HEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence            999999999999999976321                   111111    12678999999999999999988887643

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.96  E-value=1.2e-29  Score=177.60  Aligned_cols=131  Identities=20%  Similarity=0.216  Sum_probs=111.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..++||||+++|+|.+++...   .+++.+...++.|++.|+.|||+   .+++||||+|
T Consensus        97 l~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDLkp  170 (370)
T cd05596          97 MAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHS---MGFIHRDVKP  170 (370)
T ss_pred             HHhCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCH
Confidence            35679999999999999999999999999999999988543   56788888999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCC----CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILP----AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~----~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+...                   |+.+..    ..++.++|+||+||++|||+++..|+...
T Consensus       171 ~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  250 (370)
T cd05596         171 DNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (370)
T ss_pred             HHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCC
Confidence            9999999999999999875321                   111111    23678999999999999999998887654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=1.7e-29  Score=170.57  Aligned_cols=133  Identities=20%  Similarity=0.208  Sum_probs=114.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++.+.+.++...+++|||+++++|.+.+.......+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        47 l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dikp  123 (277)
T cd05607          47 LEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHS---MDIVYRDMKP  123 (277)
T ss_pred             HHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH---CCEEEccCCh
Confidence            3578999999999999999999999999999999988865555567888889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+++.|||.+..                 +|+......++.++|+||+||++|+|+++..|+..
T Consensus       124 ~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~  196 (277)
T cd05607         124 ENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKD  196 (277)
T ss_pred             HhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999986542                 22223345578899999999999999998888753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.7e-30  Score=184.92  Aligned_cols=127  Identities=25%  Similarity=0.289  Sum_probs=112.7

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||.++.++.+|.+++.+++||||+.+|++...+   ....+++..+..++..++.|+.|||+   ++|++||||..|||
T Consensus       427 ~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~---~~~~F~e~rarfyaAev~l~L~fLH~---~~IIYRDlKLdNiL  500 (694)
T KOG0694|consen  427 RHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHI---HTDVFSEPRARFYAAEVVLGLQFLHE---NGIIYRDLKLDNLL  500 (694)
T ss_pred             cCCeEeecccccccCCeEEEEEEecCCCcEEEEE---ecccccHHHHHHHHHHHHHHHHHHHh---cCceeeecchhheE
Confidence            7999999999999999999999999999944333   23588999999999999999999998   99999999999999


Q ss_pred             EcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++..|.+|+.|||++.                  ++|+.+....|+.++|+|||||++|||+.|..|++.+
T Consensus       501 LD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gd  571 (694)
T KOG0694|consen  501 LDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGD  571 (694)
T ss_pred             EcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999763                  3455566778999999999999999999988887743

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=1.3e-29  Score=174.97  Aligned_cols=126  Identities=21%  Similarity=0.183  Sum_probs=111.0

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++.++++|||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||+
T Consensus        54 ~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~Nil  128 (329)
T cd05588          54 NHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHE---RGIIYRDLKLDNVL  128 (329)
T ss_pred             CCCCCCceEEEEEcCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHeE
Confidence            7999999999999999999999999999999888543  468899999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ++.++.++++|||.+..                  +|+......++.++|+||+||++|+++++..|++
T Consensus       129 i~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~  197 (329)
T cd05588         129 LDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  197 (329)
T ss_pred             ECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcc
Confidence            99999999999986531                  2333445567889999999999999999888875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>PHA02988 hypothetical protein; Provisional

Probab=99.96  E-value=1.5e-29  Score=171.52  Aligned_cols=133  Identities=20%  Similarity=0.320  Sum_probs=111.3

Q ss_pred             CCCCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            1 LSNLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      |++++||||++++|++.+    ....+++|||+++|+|.+++.+.  ..+++.....++.+++.|+.++|+  ..+++||
T Consensus        72 l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lH~--~~~~~Hr  147 (283)
T PHA02988         72 LRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKE--KDLSFKTKLDMAIDCCKGLYNLYK--YTNKPYK  147 (283)
T ss_pred             HHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhC--CCCChhHHHHHHHHHHHHHHHHHh--cCCCCCC
Confidence            467899999999999876    35688999999999999999654  367788889999999999999996  2378899


Q ss_pred             CCCCCcEEEcCCCcccccccchhhc--------------cccccC-C--CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRL--------------LGSRIL-P--AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~--------------~~~~~~-~--~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |++|+|++++.++.+|+.|||.+..              .+++.. .  ..++.++|||||||++|||+++..|+...
T Consensus       148 dlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~  225 (283)
T PHA02988        148 NLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENL  225 (283)
T ss_pred             cCChhhEEECCCCcEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCC
Confidence            9999999999999999999997652              122222 2  46788999999999999999988887644

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=2.3e-29  Score=172.91  Aligned_cols=128  Identities=23%  Similarity=0.240  Sum_probs=111.4

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .+||||+++++++..++..++||||+++++|...+...  ..+++.....++.|++.|+.|||+   .+++||||+|+||
T Consensus        53 ~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dlkp~Ni  127 (316)
T cd05592          53 WEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHK---KGIIYRDLKLDNV  127 (316)
T ss_pred             cCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHe
Confidence            48999999999999999999999999999999888543  367888889999999999999998   8999999999999


Q ss_pred             EEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           84 LLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+..
T Consensus       128 ll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~  198 (316)
T cd05592         128 LLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHG  198 (316)
T ss_pred             EECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCC
Confidence            999999999999997642                  22233445678899999999999999998888764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.96  E-value=2.9e-29  Score=173.39  Aligned_cols=132  Identities=23%  Similarity=0.292  Sum_probs=113.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++..++..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+  ..+++|+|++|
T Consensus        57 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~--~~~ivH~dlkp  132 (331)
T cd06649          57 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEA--KRIPEEILGKVSIAVLRGLAYLRE--KHQIMHRDVKP  132 (331)
T ss_pred             HHHCCCCCCCeEEEEEEECCEEEEEeecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhh--cCCEEcCCCCh
Confidence            35789999999999999999999999999999999998543  357888899999999999999997  23699999999


Q ss_pred             CcEEEcCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                +|+......++.++|+|||||++|+|+++..|+..
T Consensus       133 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         133 SNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             hhEEEcCCCcEEEccCcccccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999987532                23334445678899999999999999998888753

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=2.6e-29  Score=178.99  Aligned_cols=128  Identities=21%  Similarity=0.178  Sum_probs=114.1

Q ss_pred             CCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEc
Q 041845            7 RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLD   86 (143)
Q Consensus         7 ~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   86 (143)
                      -|+|+++++|..++.+|||+|.... +|.++++.+....++...+..++.||+.|+.+||+   .+|+|+||||+|||+.
T Consensus       248 ~n~Vrm~d~F~fr~HlciVfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~---l~IIHcDLKPENILL~  323 (586)
T KOG0667|consen  248 YNIVRMLDYFYFRNHLCIVFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHE---LGIIHCDLKPENILLK  323 (586)
T ss_pred             eeEEEeeeccccccceeeeehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCChhheeec
Confidence            3899999999999999999999965 99999988888889999999999999999999997   9999999999999997


Q ss_pred             CC--Ccccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           87 EN--WVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        87 ~~--~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      ..  ..+|++|||.+.               .+||.+++.+|+.+.|+||||||++||++|..-++.+.
T Consensus       324 ~~~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~n  392 (586)
T KOG0667|consen  324 DPKRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDN  392 (586)
T ss_pred             cCCcCceeEEecccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCC
Confidence            43  578999999874               35777889999999999999999999999865555443

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=3.6e-29  Score=171.98  Aligned_cols=129  Identities=21%  Similarity=0.224  Sum_probs=112.2

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .+||||+++++++.+++..++||||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||
T Consensus        53 ~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp~Ni  127 (316)
T cd05620          53 WENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHS---KGIIYRDLKLDNV  127 (316)
T ss_pred             cCCCCccCeeEEEEeCCEEEEEECCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHHHe
Confidence            48999999999999999999999999999999888543  467888899999999999999998   8999999999999


Q ss_pred             EEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           84 LLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       128 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~  199 (316)
T cd05620         128 MLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD  199 (316)
T ss_pred             EECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            999999999999996531                  233344557788999999999999999988887643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.96  E-value=3.1e-29  Score=172.55  Aligned_cols=128  Identities=19%  Similarity=0.165  Sum_probs=111.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+.+.+++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||+
T Consensus        54 ~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~---~~ivH~dlkp~NIl  128 (320)
T cd05590          54 NHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEITSALMFLHD---KGIIYRDLKLDNVL  128 (320)
T ss_pred             CCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCCHHHeE
Confidence            7999999999999999999999999999999888543  367888999999999999999997   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.++++|||.+..                  +|+......++.++|+||+||++|+|+++..|+...
T Consensus       129 i~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  199 (320)
T cd05590         129 LDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE  199 (320)
T ss_pred             ECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence            99999999999986432                  233344456788999999999999999998887643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.96  E-value=2.9e-29  Score=173.24  Aligned_cols=132  Identities=17%  Similarity=0.135  Sum_probs=112.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.+.+..++||||+++++|.+++.+. ...+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~lH~---~~i~H~Dlkp~  131 (330)
T cd05601          56 SISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRY-EDQFDEDMAQFYLAELVLAIHSVHQ---MGYVHRDIKPE  131 (330)
T ss_pred             HhCCCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEcccCchH
Confidence            4578999999999999999999999999999999998654 3468889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccC------CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRIL------PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~------~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                   |+.+.      ...++.++|+||+||++|+|+++..|+..
T Consensus       132 NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  211 (330)
T cd05601         132 NVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHE  211 (330)
T ss_pred             heEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCC
Confidence            999999999999999976421                   11111      33567889999999999999999888764


Q ss_pred             c
Q 041845          137 Q  137 (143)
Q Consensus       137 ~  137 (143)
                      .
T Consensus       212 ~  212 (330)
T cd05601         212 G  212 (330)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-29  Score=184.11  Aligned_cols=125  Identities=27%  Similarity=0.430  Sum_probs=112.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |-+++||||+++.|+....+...|++|||++|+|..+++.+. +.|.+.+...+++.|+.+++||.+   .+++||||..
T Consensus       684 MGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLsd---m~YVHRDLAA  759 (996)
T KOG0196|consen  684 MGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLSD---MNYVHRDLAA  759 (996)
T ss_pred             cccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHhh---cCchhhhhhh
Confidence            568999999999999999999999999999999999997765 569999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +|||++.+-..|++|||+.+..                     |+.+...+++.++|+||+|+++||.+.
T Consensus       760 RNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmS  829 (996)
T KOG0196|consen  760 RNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS  829 (996)
T ss_pred             hheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecc
Confidence            9999999999999999998643                     233445678899999999999999654

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=3.7e-29  Score=172.75  Aligned_cols=127  Identities=21%  Similarity=0.181  Sum_probs=111.0

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .+||||+++++++.+++..++||||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||
T Consensus        53 ~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dikp~Ni  127 (329)
T cd05618          53 SNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNV  127 (329)
T ss_pred             CCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCHHHE
Confidence            37999999999999999999999999999998887543  467889999999999999999998   8999999999999


Q ss_pred             EEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           84 LLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +++.++.++++|||.+..                  +|+......++.++|+||+||++|+|+++..|+.
T Consensus       128 li~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~  197 (329)
T cd05618         128 LLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  197 (329)
T ss_pred             EECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCc
Confidence            999999999999986542                  2333445567889999999999999999888874

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=4.6e-29  Score=171.42  Aligned_cols=129  Identities=22%  Similarity=0.261  Sum_probs=112.0

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      ++||||+++++++.+++..+++|||+++++|...+...  ..+++.....++.|++.|+.|||+   .+++|||++|+||
T Consensus        53 ~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~---~~ivHrdikp~Ni  127 (316)
T cd05619          53 WEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHS---KGIVYRDLKLDNI  127 (316)
T ss_pred             cCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeCCCCHHHE
Confidence            58999999999999999999999999999999988543  367888889999999999999998   8999999999999


Q ss_pred             EEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           84 LLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +++.++.++++|||.+.                  .+|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       128 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~  199 (316)
T cd05619         128 LLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH  199 (316)
T ss_pred             EECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCC
Confidence            99999999999999653                  1233344556788999999999999999988887543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=2.9e-29  Score=169.70  Aligned_cols=133  Identities=24%  Similarity=0.242  Sum_probs=113.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++|+||+++.+++..+...+++|||+++++|...+...  ....+++..++.++.|++.|+.|||+   .+++|+||
T Consensus        47 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl  123 (280)
T cd05608          47 LAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQ---RRIIYRDL  123 (280)
T ss_pred             HHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCC
Confidence            35689999999999999999999999999999998876432  23467889999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++.++++|||.+..                  +|+......++.++|+||+||++|+|+++..|+..
T Consensus       124 kp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~  199 (280)
T cd05608         124 KPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRA  199 (280)
T ss_pred             CHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999987532                  23334455678899999999999999998777653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.96  E-value=4.4e-29  Score=171.79  Aligned_cols=129  Identities=18%  Similarity=0.159  Sum_probs=111.5

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .+||||+++++++.+++..++||||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||
T Consensus        53 ~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDikp~Ni  127 (321)
T cd05591          53 AKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLHR---HGVIYRDLKLDNI  127 (321)
T ss_pred             cCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHe
Confidence            37999999999999999999999999999999888543  367888889999999999999998   8999999999999


Q ss_pred             EEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           84 LLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +++.++.++++|||.+..                  +|+......++.++|+||+||++|+|+++..|+...
T Consensus       128 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~  199 (321)
T cd05591         128 LLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEAD  199 (321)
T ss_pred             EECCCCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCC
Confidence            999999999999996532                  222334456788999999999999999988887643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.4e-29  Score=167.46  Aligned_cols=132  Identities=23%  Similarity=0.254  Sum_probs=106.7

Q ss_pred             CCCCCCCCcceeeEEeecC--C---chhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            1 LSNLRHRHLVSLIGHHVEN--K---EMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~---~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      |+.++|||||++.-+|...  .   .+.+||||++. +|.+.++..  .+..++...++.+..|+..|+.|||+   .+|
T Consensus        71 m~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~---~~I  146 (364)
T KOG0658|consen   71 MRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHS---HGI  146 (364)
T ss_pred             HHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHh---cCc
Confidence            4578999999998887632  2   46699999987 999988531  23567777889999999999999998   899


Q ss_pred             eecCCCCCcEEEcCC-Ccccccccchhhc-----------------ccccc-CCCCCCCcccchhhhhhhhccccccCCC
Q 041845           74 IHRDVKSTNILLDEN-WVAKHSRERQLRL-----------------LGSRI-LPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        74 ~h~~l~~~nil~~~~-~~~k~~~~~~~~~-----------------~~~~~-~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +|||+||.|+|++.. |..|++|||.+..                 +|+-+ ....|+.+.||||.||+++||+.+..-|
T Consensus       147 cHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plF  226 (364)
T KOG0658|consen  147 CHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLF  226 (364)
T ss_pred             ccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCccc
Confidence            999999999999965 9999999998742                 22222 3457899999999999999999876555


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      +.
T Consensus       227 pG  228 (364)
T KOG0658|consen  227 PG  228 (364)
T ss_pred             CC
Confidence            43

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.95  E-value=5.9e-29  Score=174.39  Aligned_cols=132  Identities=27%  Similarity=0.353  Sum_probs=110.1

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------------------------------
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------------------------------   42 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------------------------------   42 (143)
                      +.+ +|+||+++++.|.+++..+++|||+++|+|.+++....                                      
T Consensus        96 ~~l~~h~nIv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (374)
T cd05106          96 SHLGQHKNIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSS  175 (374)
T ss_pred             HhhccCCceeeEeeEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccc
Confidence            456 79999999999999999999999999999999874321                                      


Q ss_pred             ------------------------------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCccc
Q 041845           43 ------------------------------KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK   92 (143)
Q Consensus        43 ------------------------------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k   92 (143)
                                                    ...+++.....++.|++.|+.|||+   ++++||||||+||+++.++.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~---~giiHrDLkp~Nil~~~~~~~k  252 (374)
T cd05106         176 QGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLAS---KNCIHRDVAARNVLLTDGRVAK  252 (374)
T ss_pred             cccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCEEeccCchheEEEeCCCeEE
Confidence                                          1235677888999999999999998   8999999999999999999999


Q ss_pred             ccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           93 HSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        93 ~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ++|||.+..                    +|+......++.++|+|||||++|+|++ +..|+..
T Consensus       253 L~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~  317 (374)
T cd05106         253 ICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPG  317 (374)
T ss_pred             EeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence            999987532                    2223344567889999999999999996 7766643

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=4.8e-30  Score=183.43  Aligned_cols=129  Identities=26%  Similarity=0.405  Sum_probs=116.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||+|+++|+|.....+|||+|||..|+|.+++++.....++....+.++.||..|+.||-.   +.++||||..
T Consensus       317 MKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEk---knFIHRDLAA  393 (1157)
T KOG4278|consen  317 MKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEK---KNFIHRDLAA  393 (1157)
T ss_pred             HHhhcCccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHH---hhhhhhhhhh
Confidence            5789999999999999999999999999999999999998877777878889999999999999996   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc-------------------cCCCCCCCcccchhhhhhhhccccccC
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR-------------------ILPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~-------------------~~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      +|+|++.+..+|+.|||+.+++...                   +....++.++|+|+||+++||++|..+
T Consensus       394 RNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGM  464 (1157)
T KOG4278|consen  394 RNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGM  464 (1157)
T ss_pred             hhccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCC
Confidence            9999999999999999999865433                   344567889999999999999999543

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.7e-29  Score=174.47  Aligned_cols=131  Identities=18%  Similarity=0.142  Sum_probs=113.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.+++..++||||+++++|.+.+.+.  ..++...+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~giiH~Dlkp~  130 (350)
T cd05573          56 ADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHK---LGFIHRDIKPD  130 (350)
T ss_pred             HhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHH
Confidence            4678999999999999999999999999999999998654  467889999999999999999998   99999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-----------------------------------------------ccccCCCCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-----------------------------------------------GSRILPAKLTEK  114 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~  114 (143)
                      ||+++.++.++++|||.+...                                               |+.+....++.+
T Consensus       131 NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  210 (350)
T cd05573         131 NILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLE  210 (350)
T ss_pred             HeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCc
Confidence            999999999999999875422                                               122234467889


Q ss_pred             ccchhhhhhhhccccccCCCCcc
Q 041845          115 SDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       115 ~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|+|||||++|+|+++..|+...
T Consensus       211 ~DiwSlG~il~ell~g~~Pf~~~  233 (350)
T cd05573         211 CDWWSLGVILYEMLYGFPPFYSD  233 (350)
T ss_pred             eeeEecchhhhhhccCCCCCCCC
Confidence            99999999999999998887654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=2.1e-29  Score=174.55  Aligned_cols=133  Identities=24%  Similarity=0.234  Sum_probs=108.6

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |++++|||||+++++..++  +.+|||+|||..|.+...-.  ....+.+.+++.++++++.|+.|||.   ++|+||||
T Consensus       162 lKkl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~--d~~els~~~Ar~ylrDvv~GLEYLH~---QgiiHRDI  236 (576)
T KOG0585|consen  162 LKKLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPP--DKPELSEQQARKYLRDVVLGLEYLHY---QGIIHRDI  236 (576)
T ss_pred             HHhcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCCC--CcccccHHHHHHHHHHHHHHHHHHHh---cCeecccc
Confidence            5789999999999998765  57999999999988765432  22238899999999999999999998   99999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc-----------------------ccccCCC----CCCCcccchhhhhhhhcccccc
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL-----------------------GSRILPA----KLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~-----------------------~~~~~~~----~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      ||.|+|++++|.+|++|||.....                       |+....+    -.+.+.||||+||++|-++++.
T Consensus       237 KPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~  316 (576)
T KOG0585|consen  237 KPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQ  316 (576)
T ss_pred             chhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhcc
Confidence            999999999999999999976532                       1111111    1246789999999999999999


Q ss_pred             CCCCccc
Q 041845          132 MAENEQE  138 (143)
Q Consensus       132 ~~~~~~~  138 (143)
                      +||....
T Consensus       317 ~PF~~~~  323 (576)
T KOG0585|consen  317 LPFFDDF  323 (576)
T ss_pred             CCcccch
Confidence            8887554

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=4.9e-29  Score=177.02  Aligned_cols=133  Identities=23%  Similarity=0.354  Sum_probs=114.9

Q ss_pred             CCCCCCCCcceeeEEeecCCc--hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKE--MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~--~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.|+||||++++..|.+...  +.+|+|.+..|+|..+..+..  ......++.|++||+.++.|||+.. .+|+||||
T Consensus        95 LKsL~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~kk~~--~vn~kaik~W~RQILkGL~yLHs~~-PPIIHRDL  171 (632)
T KOG0584|consen   95 LKSLKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRKKHR--RVNIKAIKSWCRQILKGLVYLHSQD-PPIIHRDL  171 (632)
T ss_pred             HccCCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhhhcCC-CCcccccc
Confidence            688999999999999987654  889999999999999996543  6677889999999999999999844 58999999


Q ss_pred             CCCcEEEcC-CCcccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDE-NWVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~-~~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |..||+++. -|.+||+|.|+++               ++++++..+.|+..+||||||+.+.||+|+.+|.++
T Consensus       172 KCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsE  245 (632)
T KOG0584|consen  172 KCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSE  245 (632)
T ss_pred             ccceEEEcCCcCceeecchhHHHHhhccccceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhh
Confidence            999999985 4899999999876               334445567899999999999999999998877653

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.95  E-value=7.1e-29  Score=169.50  Aligned_cols=132  Identities=28%  Similarity=0.427  Sum_probs=109.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-----------------CCCCcHHHHHHHHHHHHHHHh
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-----------------KPPLQWMWRLKICIGAARGLH   63 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~l~   63 (143)
                      |++++||||+++++++.+.+..+++|||+++++|.+++....                 ...+++.....++.|++.|+.
T Consensus        73 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~  152 (304)
T cd05096          73 LSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMK  152 (304)
T ss_pred             HhhcCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999885321                 123566778899999999999


Q ss_pred             HhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhh
Q 041845           64 YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVL  123 (143)
Q Consensus        64 ~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~  123 (143)
                      |||+   .+++|+||+|+||+++.++.+|++|||.+..                    +|+......++.++|+||||++
T Consensus       153 ~lH~---~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~  229 (304)
T cd05096         153 YLSS---LNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVT  229 (304)
T ss_pred             HHHH---CCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHH
Confidence            9998   8999999999999999999999999997642                    2222344567889999999999


Q ss_pred             hhcccc--ccCCCC
Q 041845          124 CARPAM--LPMAEN  135 (143)
Q Consensus       124 ~~~~~~--~~~~~~  135 (143)
                      +|+|++  ++.|+.
T Consensus       230 l~el~~~~~~~p~~  243 (304)
T cd05096         230 LWEILMLCKEQPYG  243 (304)
T ss_pred             HHHHHHccCCCCCC
Confidence            999875  444443

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.95  E-value=1.2e-28  Score=167.24  Aligned_cols=131  Identities=21%  Similarity=0.276  Sum_probs=109.4

Q ss_pred             CCCCCCCcceeeEEeec-----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVE-----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~-----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++||||+++++++..     ...+++++|+++ ++|.+++.......+++..+..++.|++.|+.|||+   .+++|+
T Consensus        59 ~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~iiH~  134 (290)
T cd07862          59 ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHR  134 (290)
T ss_pred             cccCCCCcceEEEEEecccCCCCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeC
Confidence            35679999999998852     346889999996 599998866555568889999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |++|+||+++.++.++++|||.+..                 +|+......++.++|+||+||++|||+++..++..
T Consensus       135 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  211 (290)
T cd07862         135 DLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG  211 (290)
T ss_pred             CCCHHHEEEcCCCCEEEccccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCC
Confidence            9999999999999999999987642                 23333445678899999999999999998777654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.95  E-value=9e-29  Score=166.14  Aligned_cols=131  Identities=24%  Similarity=0.329  Sum_probs=110.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++..++..++||||+++++|.+++... ...+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        60 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~i~~al~~lH~---~~iiH~dikp  135 (266)
T cd05064          60 LGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKH-EGQLVAGQLMGMLPGLASGMKYLSE---MGYVHKGLAA  135 (266)
T ss_pred             HhcCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeeccccH
Confidence            35689999999999999999999999999999999998543 3467889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh-------------------ccccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLR-------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~-------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .||+++.++..+++|||...                   .+|+......++.++|+|||||++||+++ +..|+.
T Consensus       136 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~  210 (266)
T cd05064         136 HKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYW  210 (266)
T ss_pred             hhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcC
Confidence            99999999999999987532                   12333345667889999999999999664 766664

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=9.2e-29  Score=170.56  Aligned_cols=132  Identities=22%  Similarity=0.279  Sum_probs=110.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++|+||++++++.+++.......+++..++.++.|++.|+.|||+   .+++|+|++|+
T Consensus        54 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiH~dlkp~  130 (327)
T cd08227          54 KLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHH---MGYVHRSVKAS  130 (327)
T ss_pred             HhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCChh
Confidence            567999999999999999999999999999999999865444568889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchh-------------------------hccccccCC--CCCCCcccchhhhhhhhccccccCCC
Q 041845           82 NILLDENWVAKHSRERQL-------------------------RLLGSRILP--AKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~-------------------------~~~~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ||+++.++.+++.+|+..                         +.+|+.+..  ..++.++|+||+||++|+++++..|+
T Consensus       131 Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf  210 (327)
T cd08227         131 HILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPF  210 (327)
T ss_pred             hEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            999999888887776421                         122333322  35788999999999999999988887


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       211 ~~  212 (327)
T cd08227         211 KD  212 (327)
T ss_pred             CC
Confidence            54

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.95  E-value=1.1e-28  Score=170.34  Aligned_cols=126  Identities=21%  Similarity=0.174  Sum_probs=110.7

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+.+.+++||||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||+
T Consensus        54 ~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nil  128 (327)
T cd05617          54 SNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHE---RGIIYRDLKLDNVL  128 (327)
T ss_pred             CCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHEE
Confidence            6999999999999999999999999999999887543  368899999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ++.++.++++|||.+..                  +|+......++.++|+||+||++|+|+++..|+.
T Consensus       129 i~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~  197 (327)
T cd05617         129 LDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFD  197 (327)
T ss_pred             EeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCC
Confidence            99999999999986532                  2333445677889999999999999999888874

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.95  E-value=1.2e-28  Score=169.84  Aligned_cols=128  Identities=20%  Similarity=0.176  Sum_probs=111.3

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +|++|+++++++.+.+.+++||||+++|+|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||+
T Consensus        59 ~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~Nil  133 (323)
T cd05616          59 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVM  133 (323)
T ss_pred             CCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEEecCCCHHHeE
Confidence            6899999999999999999999999999999888543  367888999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.++++|||.+..                  +|+.+....++.++|+|||||++|||+++..|+...
T Consensus       134 l~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~  204 (323)
T cd05616         134 LDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  204 (323)
T ss_pred             ECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC
Confidence            99999999999996532                  233344566789999999999999999988887644

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.95  E-value=9.8e-29  Score=170.90  Aligned_cols=132  Identities=23%  Similarity=0.289  Sum_probs=112.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+||++++++|.+++..+++|||+++++|.+++...  ..+++.....++.|++.|+.|||+  ..+++|+||+|
T Consensus        57 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~--~~~ivH~dlkp  132 (333)
T cd06650          57 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKP  132 (333)
T ss_pred             HHHCCCCcccceeEEEEECCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCCh
Confidence            35689999999999999999999999999999999998543  357788889999999999999996  24799999999


Q ss_pred             CcEEEcCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                +|+......++.++|+|||||++|+|+++..|+..
T Consensus       133 ~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         133 SNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             hhEEEcCCCCEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            999999999999999986542                23333445678899999999999999998877653

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.95  E-value=1.3e-28  Score=169.35  Aligned_cols=128  Identities=20%  Similarity=0.175  Sum_probs=111.8

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+.+.++++|||+++++|...+.+.  ..+++.....++.|++.|+.|||+   .+++|+||+|+||+
T Consensus        54 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~Nil  128 (318)
T cd05570          54 KHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHE---RGIIYRDLKLDNVL  128 (318)
T ss_pred             CCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEccCCCHHHeE
Confidence            7999999999999999999999999999999888543  368889999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       129 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~  199 (318)
T cd05570         129 LDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD  199 (318)
T ss_pred             ECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCC
Confidence            99999999999986531                  233344567788999999999999999988887643

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.95  E-value=5.9e-29  Score=168.82  Aligned_cols=131  Identities=23%  Similarity=0.272  Sum_probs=109.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+.+..+++|||+++ +|.+.+... ...+++.....++.|++.|+.|||+   .+++||||+|
T Consensus        57 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~dlkp  131 (288)
T cd07871          57 LKNLKHANIVTLHDIIHTERCLTLVFEYLDS-DLKQYLDNC-GNLMSMHNVKIFMFQLLRGLSYCHK---RKILHRDLKP  131 (288)
T ss_pred             HHhCCCCCEeeEEEEEcCCCeEEEEEeCCCc-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCH
Confidence            3568999999999999998999999999975 898888543 3356788889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+|++|||.+..                  +|+.... ..++.++|+||+||++|+|+++..|+..
T Consensus       132 ~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~  206 (288)
T cd07871         132 QNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPG  206 (288)
T ss_pred             HHEEECCCCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999997532                  1222222 3568899999999999999998877754

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.95  E-value=1.3e-28  Score=164.97  Aligned_cols=133  Identities=26%  Similarity=0.349  Sum_probs=113.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++..++.++++|||+++++|.+++.......+++.....++.|++.++.+||+   .+++|+|++|
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp  132 (263)
T cd05052          56 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEK---KNFIHRDLAA  132 (263)
T ss_pred             HHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCc
Confidence            3568999999999999999999999999999999999866555567888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||++++++.++++|||.+..                   +|+......++.++|+|||||++|||++ +..|++.
T Consensus       133 ~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~  208 (263)
T cd05052         133 RNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG  208 (263)
T ss_pred             ceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999999986542                   2233344567788999999999999998 6666543

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.95  E-value=8.1e-29  Score=169.18  Aligned_cols=131  Identities=21%  Similarity=0.234  Sum_probs=109.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.++...+++|||+. +++.+.+... ...++...+..++.|++.|+.|||+   .+++|+||||
T Consensus        57 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp  131 (303)
T cd07869          57 LKGLKHANIVLLHDIIHTKETLTLVFEYVH-TDLCQYMDKH-PGGLHPENVKLFLFQLLRGLSYIHQ---RYILHRDLKP  131 (303)
T ss_pred             HhhCCCCCcCeEEEEEecCCeEEEEEECCC-cCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            357899999999999999999999999996 5888877543 3457788889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccC-CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+|++|||.+..                  +|+.+. ...++.++|+||+||++|+|+++..|+..
T Consensus       132 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  206 (303)
T cd07869         132 QNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPG  206 (303)
T ss_pred             HHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999997532                  122222 23467889999999999999998877754

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1e-28  Score=167.44  Aligned_cols=133  Identities=24%  Similarity=0.229  Sum_probs=114.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++.++++|||+++++|.+.+.......+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp  130 (285)
T cd05605          54 LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHR---ERIVYRDLKP  130 (285)
T ss_pred             HHhcCCCCEeeeeeeecCCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCH
Confidence            3567999999999999999999999999999999988755444568889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||++++++.+++.|||.+..                 +|+.+....++.++|+||+||++|+++++..|+..
T Consensus       131 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~  203 (285)
T cd05605         131 ENILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQ  203 (285)
T ss_pred             HHEEECCCCCEEEeeCCCceecCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCC
Confidence            999999999999999986543                 22333445677889999999999999998888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=6.8e-29  Score=171.53  Aligned_cols=132  Identities=19%  Similarity=0.139  Sum_probs=111.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.+++.+++||||+++++|.+++.+. ...+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~  131 (331)
T cd05597          56 VNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVLAIDSVHQ---LGYVHRDIKPD  131 (331)
T ss_pred             HhCCCCCCCceEEEEecCCeEEEEEecCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEECCCCHH
Confidence            4568999999999999999999999999999999998542 3467888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccC-----CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRIL-----PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                   |+.+.     ...++.++|+||+||++|+|+++..|+...
T Consensus       132 Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  211 (331)
T cd05597         132 NVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             HEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCC
Confidence            999999999999999875321                   11111     134567899999999999999998887643

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.95  E-value=1.3e-28  Score=170.07  Aligned_cols=129  Identities=20%  Similarity=0.143  Sum_probs=109.7

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.+ +|+||+++++++..++.++++|||+++++|.+.+..+  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        59 ~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivHrDlkp  133 (332)
T cd05614          59 EHVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQR--DNFSEDEVRFYSGEIILALEHLHK---LGIVYRDIKL  133 (332)
T ss_pred             HhccCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcEecCCCH
Confidence            345 5899999999999999999999999999999988543  367888899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++.++++|||.+...                   |+.+.. ..++.++|+|||||++|||+++..|+.
T Consensus       134 ~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~  208 (332)
T cd05614         134 ENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFT  208 (332)
T ss_pred             HHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCC
Confidence            9999999999999999976421                   222222 236778999999999999999888875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.95  E-value=8.4e-29  Score=171.13  Aligned_cols=132  Identities=18%  Similarity=0.113  Sum_probs=111.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.+.+.+++||||+++|+|.+++.+. ...+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~~~~qi~~al~~lH~---~~iiHrDlkp~  131 (332)
T cd05623          56 VNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVIAIDSVHQ---LHYVHRDIKPD  131 (332)
T ss_pred             hhCCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHH
Confidence            4578999999999999999999999999999999999543 2467888889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-------------------cccccC-----CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL-------------------LGSRIL-----PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-------------------~~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+..                   +|+.+.     ...++.++|+|||||++|||+++..|+...
T Consensus       132 Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~  211 (332)
T cd05623         132 NILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (332)
T ss_pred             HEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCC
Confidence            99999999999999996531                   111111     235678999999999999999998887654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.95  E-value=8.1e-29  Score=171.16  Aligned_cols=132  Identities=19%  Similarity=0.131  Sum_probs=111.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.+++..++||||+++|+|.+++.+. ...+++..+..++.|++.|+.|+|+   .+++||||||+
T Consensus        56 ~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~~L~~lH~---~~iiHrDlkp~  131 (331)
T cd05624          56 VNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYIAEMVLAIHSIHQ---LHYVHRDIKPD  131 (331)
T ss_pred             HhCCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCchH
Confidence            4568999999999999999999999999999999999543 2467888889999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCC-----CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILP-----AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~-----~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                   |+.+..     ..++.++|+||+||++|+|+++..|+...
T Consensus       132 Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  211 (331)
T cd05624         132 NVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             HEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCC
Confidence            999999999999999865321                   111111     34678899999999999999988887543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.95  E-value=1.8e-28  Score=171.99  Aligned_cols=131  Identities=24%  Similarity=0.311  Sum_probs=109.0

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------------------------------
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------------------------------   42 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------------------------------   42 (143)
                      +.+ +||||++++++|.+++..+++|||+++|+|.+++....                                      
T Consensus        93 ~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  172 (375)
T cd05104          93 SYLGNHINIVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMK  172 (375)
T ss_pred             HHhcCCcceeeeeeeeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcC
Confidence            345 79999999999999999999999999999999885321                                      


Q ss_pred             -----------------------------------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcC
Q 041845           43 -----------------------------------KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDE   87 (143)
Q Consensus        43 -----------------------------------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~   87 (143)
                                                         ...+++..+..++.|++.|+.|||+   .+++|+|+||+||+++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nill~~  249 (375)
T cd05104         173 PGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLAS---KNCIHRDLAARNILLTH  249 (375)
T ss_pred             CCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCchhhEEEEC
Confidence                                               1235677788999999999999998   89999999999999999


Q ss_pred             CCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           88 NWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        88 ~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      ++.++++|||.+.                    .+|+......++.++|+|||||++|||++ +..|+.
T Consensus       250 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~  318 (375)
T cd05104         250 GRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYP  318 (375)
T ss_pred             CCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCC
Confidence            9999999999753                    12333345567889999999999999987 555554

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.8e-28  Score=169.28  Aligned_cols=128  Identities=23%  Similarity=0.156  Sum_probs=109.7

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++..+++|||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||+
T Consensus        54 ~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qil~al~~LH~---~~ivHrDlkp~Nil  128 (330)
T cd05586          54 ESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKE--GRFSEDRAKFYIAELVLALEHLHK---YDIVYRDLKPENIL  128 (330)
T ss_pred             CCCcCcceEEEEecCCeEEEEEcCCCCChHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHHHeE
Confidence            6999999999999999999999999999999888543  467889999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.++++|||.+..                  +|+.+.. ..++.++|+||+||++|+|+++..|+...
T Consensus       129 i~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~  200 (330)
T cd05586         129 LDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAE  200 (330)
T ss_pred             ECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCC
Confidence            99999999999997532                  1222222 24688999999999999999988877543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.95  E-value=2.4e-29  Score=168.45  Aligned_cols=132  Identities=37%  Similarity=0.497  Sum_probs=109.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||++++|++...+..++|+||+++|+|.+++.......+++.....++.|++.|+.|||+   .+++|++|+++
T Consensus        56 ~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~---~~iiH~~l~~~  132 (259)
T PF07714_consen   56 RKLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHS---NNIIHGNLSPS  132 (259)
T ss_dssp             HTHSBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHH---TTEEEST-SGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccc
Confidence            467999999999999988889999999999999999977655688999999999999999999998   88999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+|++|||.....                    |+......++.++||||||+++||+++ +..|+..
T Consensus       133 nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~  208 (259)
T PF07714_consen  133 NILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSD  208 (259)
T ss_dssp             GEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999876433                    111223346889999999999999999 4566543

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.95  E-value=2.6e-28  Score=165.80  Aligned_cols=132  Identities=30%  Similarity=0.402  Sum_probs=112.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      ++.++|+||+++++++...+..+++|||+++++|.+++....              ...+++.....++.|++.|+.|||
T Consensus        61 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH  140 (291)
T cd05094          61 LTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA  140 (291)
T ss_pred             HhcCCCCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999985432              234678889999999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~  126 (143)
                      +   ++++|+|++|.||+++.++.+++.|||.+.                    .+|+......++.++|+||||+++|+
T Consensus       141 ~---~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e  217 (291)
T cd05094         141 S---QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWE  217 (291)
T ss_pred             h---CCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHH
Confidence            7   899999999999999999999999998653                    12333444567889999999999999


Q ss_pred             ccc-ccCCCC
Q 041845          127 PAM-LPMAEN  135 (143)
Q Consensus       127 ~~~-~~~~~~  135 (143)
                      |++ +..|+.
T Consensus       218 l~t~g~~p~~  227 (291)
T cd05094         218 IFTYGKQPWF  227 (291)
T ss_pred             HHhCCCCCCC
Confidence            998 777754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.95  E-value=3.2e-28  Score=162.67  Aligned_cols=132  Identities=29%  Similarity=0.411  Sum_probs=111.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++++||||+++++++.+.+..+++|||+++++|.+++.... ..+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p  128 (256)
T cd05113          53 MMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLES---KQFIHRDLAA  128 (256)
T ss_pred             HhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCc
Confidence            467899999999999998889999999999999999986543 367889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .||+++.++.++++|||.....                   |+......++.++|+||||+++|+|++ +..|+..
T Consensus       129 ~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~  204 (256)
T cd05113         129 RNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYER  204 (256)
T ss_pred             ceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCc
Confidence            9999999999999999865421                   222223456788999999999999998 7777653

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.1e-28  Score=161.59  Aligned_cols=125  Identities=29%  Similarity=0.290  Sum_probs=108.5

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      -||+|+++.++++++.++++|+|.++.|.|.+++.+  ...+++.....+++|+..++.|+|.   ++|+||||||+|||
T Consensus        81 GHP~II~l~D~yes~sF~FlVFdl~prGELFDyLts--~VtlSEK~tR~iMrqlfegVeylHa---~~IVHRDLKpENIL  155 (411)
T KOG0599|consen   81 GHPYIIDLQDVYESDAFVFLVFDLMPRGELFDYLTS--KVTLSEKETRRIMRQLFEGVEYLHA---RNIVHRDLKPENIL  155 (411)
T ss_pred             CCCcEEEeeeeccCcchhhhhhhhcccchHHHHhhh--heeecHHHHHHHHHHHHHHHHHHHH---hhhhhcccChhhee
Confidence            699999999999999999999999999999999954  4577888889999999999999997   89999999999999


Q ss_pred             EcCCCcccccccchhhcc-----------------cccc------CCCCCCCcccchhhhhhhhccccccCCC
Q 041845           85 LDENWVAKHSRERQLRLL-----------------GSRI------LPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~-----------------~~~~------~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ++++.+++++|||++.-.                 |+-+      ....|+..+|+||.|+++|.++.|..|+
T Consensus       156 lddn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPF  228 (411)
T KOG0599|consen  156 LDDNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPF  228 (411)
T ss_pred             eccccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCch
Confidence            999999999999987522                 1111      1346788999999999999988765554

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=1.9e-28  Score=172.65  Aligned_cols=128  Identities=22%  Similarity=0.209  Sum_probs=109.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++..+...++++|++. ++|..++...  ..+++..++.++.|++.|+.|+|+   .+++||||||
T Consensus       137 l~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH~---~~IvHrDiKP  210 (391)
T PHA03212        137 LRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDLYCYLAAK--RNIAICDILAIERSVLRAIQYLHE---NRIIHRDIKA  210 (391)
T ss_pred             HHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCh
Confidence            467899999999999999999999999985 6888887543  367788899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +||+++..+.++++|||.+..                   +|+.+....++.++|+||+||++|||+++..|+
T Consensus       211 ~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~  283 (391)
T PHA03212        211 ENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSL  283 (391)
T ss_pred             HhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence            999999999999999997642                   233344556788999999999999999976543

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.95  E-value=9.1e-29  Score=167.59  Aligned_cols=131  Identities=20%  Similarity=0.194  Sum_probs=109.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..+++|||++++.+..... . ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-~-~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp  128 (287)
T cd07848          54 LRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEE-M-PNGVPPEKVRSYIYQLIKAIHWCHK---NDIVHRDIKP  128 (287)
T ss_pred             HHhCCCccccchhhhEecCCEEEEEEecCCCCHHHHHHh-c-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            357899999999999999999999999999866655442 2 3467888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                   +|+......++.++|+||+||++|+|+++..|++.
T Consensus       129 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~  203 (287)
T cd07848         129 ENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPG  203 (287)
T ss_pred             HHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCC
Confidence            999999999999999987642                   12223345678899999999999999998877764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.95  E-value=1.5e-28  Score=167.92  Aligned_cols=131  Identities=28%  Similarity=0.370  Sum_probs=110.2

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      +++ +|+||+++++++.+++..++++||+++++|.+++....              ...+++..+..++.|++.|+.|||
T Consensus        62 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH  141 (303)
T cd05088          62 CKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS  141 (303)
T ss_pred             HHhcCCCCcceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH
Confidence            356 89999999999999999999999999999999985432              135678889999999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhcccc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +   .+++|+|++|+||+++.++.++++|||...                 .+|+......++.++|+|||||++|+|++
T Consensus       142 ~---~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt  218 (303)
T cd05088         142 Q---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS  218 (303)
T ss_pred             h---CCccccccchheEEecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHh
Confidence            7   899999999999999999999999999753                 12222334456789999999999999997


Q ss_pred             -ccCCCC
Q 041845          130 -LPMAEN  135 (143)
Q Consensus       130 -~~~~~~  135 (143)
                       +..|+.
T Consensus       219 ~g~~p~~  225 (303)
T cd05088         219 LGGTPYC  225 (303)
T ss_pred             cCCCCcc
Confidence             666664

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=1.6e-28  Score=165.05  Aligned_cols=131  Identities=24%  Similarity=0.295  Sum_probs=107.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC---CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK---PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +.++|+||+++++.+.+....+++|||+++++|.+++.+...   ...++.....++.|++.|+.|+|+   .+++|+|+
T Consensus        50 ~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dl  126 (269)
T cd05042          50 RELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ---ADFIHSDL  126 (269)
T ss_pred             HhCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHh---cCEecccc
Confidence            467899999999999999999999999999999999865422   233567788999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc-------------------ccccc--------CCCCCCCcccchhhhhhhhcccc-c
Q 041845           79 KSTNILLDENWVAKHSRERQLRL-------------------LGSRI--------LPAKLTEKSDVYSFGVLCARPAM-L  130 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~-------------------~~~~~--------~~~~~~~~~Di~s~G~~~~~~~~-~  130 (143)
                      ||.||+++.++.++++|||.+..                   .+++.        ....++.++|+||+||++|||++ +
T Consensus       127 kp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~  206 (269)
T cd05042         127 ALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAA  206 (269)
T ss_pred             cHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCC
Confidence            99999999999999999997532                   11111        12345778999999999999998 5


Q ss_pred             cCCCC
Q 041845          131 PMAEN  135 (143)
Q Consensus       131 ~~~~~  135 (143)
                      ..|+.
T Consensus       207 ~~p~~  211 (269)
T cd05042         207 DQPYP  211 (269)
T ss_pred             CCCCC
Confidence            55554

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.95  E-value=3.2e-28  Score=162.80  Aligned_cols=133  Identities=28%  Similarity=0.389  Sum_probs=114.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++.+....+++|||+++++|.+++.+.....+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        56 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~h~dl~~  132 (261)
T cd05148          56 LKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEE---QNSIHRDLAA  132 (261)
T ss_pred             HhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccCc
Confidence            4678999999999999999999999999999999999976555678889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                  |+......++.++|+||||+++|++++ +..|+..
T Consensus       133 ~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~  207 (261)
T cd05148         133 RNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPG  207 (261)
T ss_pred             ceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCc
Confidence            9999999999999999876422                  223334567788999999999999998 6666653

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.8e-29  Score=174.29  Aligned_cols=135  Identities=18%  Similarity=0.186  Sum_probs=115.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+-++|||||++|++..++..+|+|.|.-++|+|.+++.++ ...+.+..+.+++.||+.|+.|+|+   ..++||||||
T Consensus        71 MKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKH-e~Gl~E~La~kYF~QI~~AI~YCHq---LHVVHRDLKP  146 (864)
T KOG4717|consen   71 MKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKH-EEGLNEDLAKKYFAQIVHAISYCHQ---LHVVHRDLKP  146 (864)
T ss_pred             HHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhh-hccccHHHHHHHHHHHHHHHHHHhh---hhhhcccCCc
Confidence            34579999999999999999999999999999999999765 3578889999999999999999998   7899999999


Q ss_pred             CcEEEcCC-Ccccccccchhh-----------------ccccccCCCCCC-CcccchhhhhhhhccccccCCCCcccc
Q 041845           81 TNILLDEN-WVAKHSRERQLR-----------------LLGSRILPAKLT-EKSDVYSFGVLCARPAMLPMAENEQEV  139 (143)
Q Consensus        81 ~nil~~~~-~~~k~~~~~~~~-----------------~~~~~~~~~~~~-~~~Di~s~G~~~~~~~~~~~~~~~~~~  139 (143)
                      +|+++.++ |.+|++|||+..                 .+|+-+++..|+ +++||||+|+++|-+..|..||.+-+.
T Consensus       147 ENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAND  224 (864)
T KOG4717|consen  147 ENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAND  224 (864)
T ss_pred             ceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccc
Confidence            99988755 899999999754                 233445555664 789999999999999999888876543

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.95  E-value=7.2e-29  Score=175.80  Aligned_cols=133  Identities=25%  Similarity=0.348  Sum_probs=115.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++-+|.||+-+.|+|..+.. .||+.||++.+|..++... ...|+..+...|+.|+++|+.|||.   ++|+|+|||.
T Consensus       442 lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGsSLY~hlHv~-etkfdm~~~idIAqQiaqGM~YLHA---K~IIHrDLKS  516 (678)
T KOG0193|consen  442 LKKTRHENILLFMGACMNPPL-AIITQWCEGSSLYTHLHVQ-ETKFDMNTTIDIAQQIAQGMDYLHA---KNIIHRDLKS  516 (678)
T ss_pred             HhhcchhhheeeehhhcCCce-eeeehhccCchhhhhccch-hhhhhHHHHHHHHHHHHHhhhhhhh---hhhhhhhccc
Confidence            467899999999999988777 9999999999999999543 3678888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc--------------------ccccc---CCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL--------------------LGSRI---LPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~--------------------~~~~~---~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      .||++.+++.+||+|||++..                    +|+.+   ...+|++.+||||||++.|||+++.+|...+
T Consensus       517 nNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~  596 (678)
T KOG0193|consen  517 NNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQ  596 (678)
T ss_pred             cceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCC
Confidence            999999999999999998752                    22221   2457899999999999999999999888754


Q ss_pred             c
Q 041845          138 E  138 (143)
Q Consensus       138 ~  138 (143)
                      .
T Consensus       597 ~  597 (678)
T KOG0193|consen  597 N  597 (678)
T ss_pred             C
Confidence            3

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.95  E-value=3e-28  Score=162.25  Aligned_cols=131  Identities=26%  Similarity=0.349  Sum_probs=110.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..+++|||+++++|.+++... ...+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        47 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~p  122 (252)
T cd05084          47 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLES---KHCIHRDLAA  122 (252)
T ss_pred             HHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccch
Confidence            35789999999999999999999999999999999998543 3457888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .||+++.++.++++|||.+..                    +|+......++.++|+||+|+++|+|++ +..|+.
T Consensus       123 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~  198 (252)
T cd05084         123 RNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYA  198 (252)
T ss_pred             heEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence            999999999999999986532                    2233344556788999999999999987 655553

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.95  E-value=3.1e-28  Score=162.93  Aligned_cols=132  Identities=25%  Similarity=0.368  Sum_probs=112.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++.+.+++..++++||+++++|.+++.+.....+++.....++.|++.|+.|||+   .+++|+|++|+
T Consensus        56 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p~  132 (261)
T cd05072          56 KTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAA  132 (261)
T ss_pred             HhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccchh
Confidence            568999999999999999999999999999999999866555567888889999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+++.|||.+...                   |+......++.++|+|||||++|+|++ +..|+..
T Consensus       133 nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~  207 (261)
T cd05072         133 NVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPG  207 (261)
T ss_pred             hEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCC
Confidence            999999999999999876432                   222333456778999999999999998 7777653

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.95  E-value=3.6e-28  Score=162.29  Aligned_cols=131  Identities=31%  Similarity=0.425  Sum_probs=112.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++...+..++++||+++++|.+++.... ..+++.....++.|++.++.|||+   .+++|+|++|
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p  128 (256)
T cd05059          53 MMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLES---NGFIHRDLAA  128 (256)
T ss_pred             HHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHH---CCcccccccH
Confidence            356899999999999999999999999999999999986443 367888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      +||+++.++.++++|||....                   +|+......++.++|+||||+++|++++ +..|+.
T Consensus       129 ~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  203 (256)
T cd05059         129 RNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYE  203 (256)
T ss_pred             hhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCC
Confidence            999999999999999986532                   2222344567789999999999999998 666664

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-28  Score=164.26  Aligned_cols=130  Identities=24%  Similarity=0.338  Sum_probs=110.0

Q ss_pred             CCCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |+.++|+||+.+.+++..+     +.+|+|+|+++. +|.+.++++  ..+........++|++.|++|+|+   .+++|
T Consensus        75 Lr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMet-DL~~iik~~--~~L~d~H~q~f~YQiLrgLKyiHS---AnViH  148 (359)
T KOG0660|consen   75 LRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELMET-DLHQIIKSQ--QDLTDDHAQYFLYQILRGLKYIHS---ANVIH  148 (359)
T ss_pred             HHHhcCCCcceEEeecccccccccceeEEehhHHhh-HHHHHHHcC--ccccHHHHHHHHHHHHHhcchhhc---ccccc
Confidence            4568999999999998752     358999999964 999999554  347888889999999999999998   99999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcccc----c-----------------cCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLLGS----R-----------------ILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~~~----~-----------------~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      |||||.|++++.++..|++|||+++...+    .                 .....|+.++||||.||++.||+++..-|
T Consensus       149 RDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplF  228 (359)
T KOG0660|consen  149 RDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLF  228 (359)
T ss_pred             cccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCC
Confidence            99999999999999999999999987632    1                 12357899999999999999999976555


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      +.
T Consensus       229 pG  230 (359)
T KOG0660|consen  229 PG  230 (359)
T ss_pred             CC
Confidence            54

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.95  E-value=4.6e-28  Score=166.94  Aligned_cols=129  Identities=20%  Similarity=0.163  Sum_probs=109.4

Q ss_pred             CCCC-CCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            3 NLRH-RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         3 ~l~h-~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .++| ++|+++++++.+.+.++++|||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~dlkp~  130 (324)
T cd05587          56 LPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLHS---KGIIYRDLKLD  130 (324)
T ss_pred             hcCCCCceeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCHH
Confidence            3444 56888999999999999999999999999988543  367888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+..
T Consensus       131 Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~  203 (324)
T cd05587         131 NVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDG  203 (324)
T ss_pred             HeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCC
Confidence            99999999999999996531                  23334445678899999999999999998888754

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=6.7e-28  Score=161.70  Aligned_cols=131  Identities=24%  Similarity=0.314  Sum_probs=107.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.++...+++|||+++++|..++... ...+++.+...++.|++.|+.|||+   .+++|+|++|+
T Consensus        59 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~  134 (262)
T cd05077          59 RQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRK-SDVLTTPWKFKVAKQLASALSYLED---KDLVHGNVCTK  134 (262)
T ss_pred             HhCCCCCEeeEEEEEecCCCCEEEEecccCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhhh---CCeECCCCCcc
Confidence            5689999999999999988999999999999998887533 3467888999999999999999998   89999999999


Q ss_pred             cEEEcCCCc-------ccccccchhhc--------------cccccC-CCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWV-------AKHSRERQLRL--------------LGSRIL-PAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~-------~k~~~~~~~~~--------------~~~~~~-~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.       +++.|||.+..              +|+... ...++.++|+|||||++|+|++ +..|+..
T Consensus       135 Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~  212 (262)
T cd05077         135 NILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKD  212 (262)
T ss_pred             cEEEecCCccCCCCceeEeCCCCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            999986654       67888886531              222222 3457788999999999999974 5555543

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.95  E-value=5.4e-28  Score=164.04  Aligned_cols=133  Identities=30%  Similarity=0.412  Sum_probs=112.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-----------CCCCcHHHHHHHHHHHHHHHhHhhcCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-----------KPPLQWMWRLKICIGAARGLHYLHTGT   69 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~l~~lh~~~   69 (143)
                      |++++||||+++++++...+..++++||+++++|.+++....           ...+++.....++.|++.|+.|||+  
T Consensus        61 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~--  138 (288)
T cd05093          61 LTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLAS--  138 (288)
T ss_pred             HHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh--
Confidence            357899999999999999999999999999999999885332           1347888999999999999999997  


Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhcccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                       .+++|+|++|+||+++.++.++++|||.+.                    .+|+......++.++|+|||||++|+|++
T Consensus       139 -~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t  217 (288)
T cd05093         139 -QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT  217 (288)
T ss_pred             -CCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHh
Confidence             899999999999999999999999998653                    12333344567889999999999999998


Q ss_pred             -ccCCCCc
Q 041845          130 -LPMAENE  136 (143)
Q Consensus       130 -~~~~~~~  136 (143)
                       +..|+..
T Consensus       218 ~g~~p~~~  225 (288)
T cd05093         218 YGKQPWYQ  225 (288)
T ss_pred             CCCCCCCC
Confidence             6666543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.95  E-value=4.7e-28  Score=163.73  Aligned_cols=132  Identities=29%  Similarity=0.416  Sum_probs=110.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC--------------CCCcHHHHHHHHHHHHHHHhHhh
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK--------------PPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      |+.++||||+++++++......++++||+++++|.+++.....              ..+++.....++.|++.|+.|||
T Consensus        62 l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH  141 (283)
T cd05048          62 MSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS  141 (283)
T ss_pred             HHhcCCcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999988899999999999999998854321              35677888999999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~  126 (143)
                      +   .+++|+|++|+||++++++.+++.|||.+.                    .+|+......++.++|+|||||++||
T Consensus       142 ~---~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~e  218 (283)
T cd05048         142 S---HHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWE  218 (283)
T ss_pred             h---CCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHH
Confidence            8   899999999999999999999999998653                    22333444567889999999999999


Q ss_pred             ccc-ccCCCC
Q 041845          127 PAM-LPMAEN  135 (143)
Q Consensus       127 ~~~-~~~~~~  135 (143)
                      |++ +..|+.
T Consensus       219 l~~~g~~p~~  228 (283)
T cd05048         219 IFSYGLQPYY  228 (283)
T ss_pred             HHcCCCCCCC
Confidence            987 655554

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.95  E-value=4.4e-28  Score=163.05  Aligned_cols=131  Identities=28%  Similarity=0.370  Sum_probs=110.0

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      +.+ +||||+++++++...+..+++|||+++++|.+++....              ...+++.+...++.|++.|+.|||
T Consensus        50 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH  129 (270)
T cd05047          50 CKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS  129 (270)
T ss_pred             HhhccCCCeeeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            356 79999999999999999999999999999999985432              124678888999999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhcccc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +   .+++|+|++|+||+++.++.++++|||.+.                 .+|+......++.++|+||||+++|||++
T Consensus       130 ~---~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~  206 (270)
T cd05047         130 Q---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS  206 (270)
T ss_pred             H---CCEeecccccceEEEcCCCeEEECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHc
Confidence            8   899999999999999999999999999752                 12232334567789999999999999996


Q ss_pred             -ccCCCC
Q 041845          130 -LPMAEN  135 (143)
Q Consensus       130 -~~~~~~  135 (143)
                       +..|+.
T Consensus       207 ~g~~pf~  213 (270)
T cd05047         207 LGGTPYC  213 (270)
T ss_pred             CCCCCcc
Confidence             666654

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=3.9e-28  Score=161.82  Aligned_cols=134  Identities=23%  Similarity=0.261  Sum_probs=114.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||++++++.+.+++..++++||+++++|.+++.......+++.....++.+++.|+.|+|+   .+++|+|++|
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~---~~i~h~dl~~  129 (256)
T cd08529          53 LAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHS---KKILHRDIKS  129 (256)
T ss_pred             HHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCc
Confidence            3578999999999999999999999999999999999876545677888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+++.|||....                  +|+......++.++|+||||+++|+|+++..|+...
T Consensus       130 ~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  204 (256)
T cd08529         130 LNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDAN  204 (256)
T ss_pred             ceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999986542                  222233455678999999999999999987776543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=8.6e-28  Score=160.84  Aligned_cols=132  Identities=27%  Similarity=0.363  Sum_probs=113.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|+||+++++++...+..++++|++++++|.+++.......+++.....++.|++.|+.++|+   .+++|+|++|+
T Consensus        56 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~  132 (261)
T cd05068          56 KKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEA---QNYIHRDLAAR  132 (261)
T ss_pred             HHCCCCCccceeEEEecCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCCcc
Confidence            568999999999999999999999999999999999966554567899999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+..                   +|+......++.++|+||||+++|++++ +..|++.
T Consensus       133 Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  207 (261)
T cd05068         133 NVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPG  207 (261)
T ss_pred             eEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999999986532                   2232334556788999999999999998 7766654

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.95  E-value=2.3e-28  Score=168.95  Aligned_cols=130  Identities=23%  Similarity=0.257  Sum_probs=106.9

Q ss_pred             CCCCCCCCcceeeEEeecCC-----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVENK-----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~-----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |+.++||||+++++++....     ..+++|||+. ++|.+.+...  ..+++.....++.|++.|+.|||+   .+++|
T Consensus        53 l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH  126 (338)
T cd07859          53 LRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQVIKAN--DDLTPEHHQFFLYQLLRALKYIHT---ANVFH  126 (338)
T ss_pred             HHhCCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHH---CCeec
Confidence            35689999999999886432     4799999996 5898888543  367888999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc---------------------ccccCC--CCCCCcccchhhhhhhhccccccC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL---------------------GSRILP--AKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      +||+|+||+++.++.+|++|||.+...                     |+....  ..++.++|+|||||++|+|+++..
T Consensus       127 ~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~  206 (338)
T cd07859         127 RDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP  206 (338)
T ss_pred             CCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999976421                     111111  456789999999999999999887


Q ss_pred             CCCc
Q 041845          133 AENE  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      |+..
T Consensus       207 pf~~  210 (338)
T cd07859         207 LFPG  210 (338)
T ss_pred             CCCC
Confidence            7754

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.95  E-value=5.6e-28  Score=163.50  Aligned_cols=132  Identities=26%  Similarity=0.383  Sum_probs=110.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC---------------CCCCcHHHHHHHHHHHHHHHhHh
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH---------------KPPLQWMWRLKICIGAARGLHYL   65 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~i~~~l~~l   65 (143)
                      |+.++||||+++++++..+...+++|||+++++|.+++....               ...+++.....++.|++.|+.||
T Consensus        61 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~l  140 (283)
T cd05090          61 MAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYL  140 (283)
T ss_pred             HhhCCCCCeeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999884321               12467788889999999999999


Q ss_pred             hcCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhh
Q 041845           66 HTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCA  125 (143)
Q Consensus        66 h~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~  125 (143)
                      |+   ++++|+|++|.|++++.++.+++.|||.+..                    +|+......++.++|+||||+++|
T Consensus       141 H~---~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~  217 (283)
T cd05090         141 SS---HFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLW  217 (283)
T ss_pred             Hh---cCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHH
Confidence            98   8999999999999999999999999997642                    222233456788999999999999


Q ss_pred             cccc-ccCCCC
Q 041845          126 RPAM-LPMAEN  135 (143)
Q Consensus       126 ~~~~-~~~~~~  135 (143)
                      ||++ +..|+.
T Consensus       218 el~~~g~~p~~  228 (283)
T cd05090         218 EIFSFGLQPYY  228 (283)
T ss_pred             HHHcCCCCCCC
Confidence            9998 655553

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.95  E-value=4.7e-28  Score=166.86  Aligned_cols=128  Identities=19%  Similarity=0.170  Sum_probs=110.0

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +|++|+++++++.+.+.+++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|||++|+||+
T Consensus        59 ~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~---~~ivHrDikp~Nil  133 (323)
T cd05615          59 KPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLHR---RGIIYRDLKLDNVM  133 (323)
T ss_pred             CCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHHHeE
Confidence            4678889999999999999999999999999988543  368889999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       134 l~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (323)
T cd05615         134 LDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE  204 (323)
T ss_pred             ECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC
Confidence            99999999999986532                  223334456788999999999999999988887643

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.95  E-value=6.8e-28  Score=162.95  Aligned_cols=132  Identities=28%  Similarity=0.383  Sum_probs=111.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-------------CCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-------------PPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      |+.++|+||+++++++.+.+..++++||+++++|.+++.....             ..+++..+..++.|++.|+.|||+
T Consensus        61 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~  140 (280)
T cd05092          61 LTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS  140 (280)
T ss_pred             HhcCCCCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999864321             346788899999999999999997


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhcc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~  127 (143)
                         .+++|+|++|+||++++++.++++|||.+.                    .+|+......++.++|+|||||++|+|
T Consensus       141 ---~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  217 (280)
T cd05092         141 ---LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEI  217 (280)
T ss_pred             ---CCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHH
Confidence               899999999999999999999999998653                    123333445678899999999999999


Q ss_pred             cc-ccCCCC
Q 041845          128 AM-LPMAEN  135 (143)
Q Consensus       128 ~~-~~~~~~  135 (143)
                      ++ +..|+.
T Consensus       218 ~~~g~~p~~  226 (280)
T cd05092         218 FTYGKQPWY  226 (280)
T ss_pred             HcCCCCCCc
Confidence            97 666654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.95  E-value=6.5e-28  Score=164.33  Aligned_cols=131  Identities=26%  Similarity=0.333  Sum_probs=109.6

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      ++ +||||+++++++...+..++++||+++++|.+++.+..              ...+++.....++.|++.|+.|||+
T Consensus        58 ~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~  137 (297)
T cd05089          58 KLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSE  137 (297)
T ss_pred             hhcCCCchhheEEEEccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45 79999999999999899999999999999999985432              1246778889999999999999998


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhcccc-
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                         .+++|+|++|+||+++.++.+++.|||.+.                 .+|+......++.++|+|||||++|+|++ 
T Consensus       138 ---~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~  214 (297)
T cd05089         138 ---KQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSL  214 (297)
T ss_pred             ---CCcccCcCCcceEEECCCCeEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcC
Confidence               899999999999999999999999998653                 12223334567889999999999999997 


Q ss_pred             ccCCCCc
Q 041845          130 LPMAENE  136 (143)
Q Consensus       130 ~~~~~~~  136 (143)
                      +..|+..
T Consensus       215 g~~pf~~  221 (297)
T cd05089         215 GGTPYCG  221 (297)
T ss_pred             CCCCCCC
Confidence            7666643

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=6.4e-28  Score=161.42  Aligned_cols=132  Identities=26%  Similarity=0.304  Sum_probs=112.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++++||||+++++++.++...++++|++++++|.+.+...  ..++......++.|++.|+.+||+   .+++|+|++|
T Consensus        58 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl~p  132 (263)
T cd06625          58 LKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAY--GALTETVTRKYTRQILEGVEYLHS---NMIVHRDIKG  132 (263)
T ss_pred             HHhCCCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCH
Confidence            35789999999999999999999999999999999988543  357788889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..                     +|+......++.++|+||+|+++|+++++..|+...
T Consensus       133 ~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  210 (263)
T cd06625         133 ANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEF  210 (263)
T ss_pred             HHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcccc
Confidence            999999999999999987532                     122233345678899999999999999988877543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.95  E-value=9.4e-28  Score=164.84  Aligned_cols=131  Identities=24%  Similarity=0.376  Sum_probs=108.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||++++|++... ..++++||+++|+|.+++.+. ...+++.....++.|++.|+.|||+   .+++|+||+|
T Consensus        63 l~~l~h~niv~~~g~~~~~-~~~~v~e~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH~---~~iiH~dlkp  137 (316)
T cd05108          63 MASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEE---RRLVHRDLAA  137 (316)
T ss_pred             HHhCCCCCCCeEEEEEcCC-CceeeeecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHh---cCeeccccch
Confidence            3578999999999998764 567899999999999998654 2457788889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                    ++......++.++|+||||+++||+++ +..|+..
T Consensus       138 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~  214 (316)
T cd05108         138 RNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG  214 (316)
T ss_pred             hheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999999876422                    222334566788999999999999886 6666643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.95  E-value=5.6e-28  Score=163.86  Aligned_cols=133  Identities=23%  Similarity=0.219  Sum_probs=114.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++.+.+.+++..+++|||+++++|.+.+.......+++.....++.|++.|+.|+|+   .+++|+|++|
T Consensus        54 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~iiH~dikp  130 (285)
T cd05630          54 LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQ---ERIVYRDLKP  130 (285)
T ss_pred             HHhCCCCCeeeeeEEEecCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCCH
Confidence            3568999999999999999999999999999999998855444568888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                 +|+......++.++|+||+|+++|+|+++..|+..
T Consensus       131 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~  203 (285)
T cd05630         131 ENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQ  203 (285)
T ss_pred             HHEEECCCCCEEEeeccceeecCCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999986542                 22333445678899999999999999998888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.95  E-value=9.7e-28  Score=160.19  Aligned_cols=132  Identities=30%  Similarity=0.379  Sum_probs=111.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..+++|||+++++|.+.+.... ..+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p  128 (256)
T cd05114          53 MMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLER---NSFIHRDLAA  128 (256)
T ss_pred             HHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCc
Confidence            457899999999999999999999999999999999885433 357888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .|++++.++.++++|||.+..                   +|+......++.++|+||||+++|++++ +..|+..
T Consensus       129 ~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~  204 (256)
T cd05114         129 RNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEK  204 (256)
T ss_pred             ceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999999986542                   1222334566789999999999999998 6666643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.95  E-value=6.8e-28  Score=163.73  Aligned_cols=131  Identities=26%  Similarity=0.362  Sum_probs=110.1

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--------------CCCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--------------HKPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      +.+ +|+||+++++++.+++..+++|||+++++|..++...              ....+++.....++.|++.|+.|||
T Consensus        70 ~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH  149 (293)
T cd05053          70 KMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA  149 (293)
T ss_pred             HhhcCCCCeeeEEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence            345 7999999999999999999999999999999998532              2346788889999999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~  126 (143)
                      +   .+++|+|++|.||+++.++.++++|||.+..                    +|+......++.++|+|||||++|+
T Consensus       150 ~---~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e  226 (293)
T cd05053         150 S---KKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWE  226 (293)
T ss_pred             H---CCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHH
Confidence            7   8999999999999999999999999987642                    2233344567788999999999999


Q ss_pred             ccc-ccCCCC
Q 041845          127 PAM-LPMAEN  135 (143)
Q Consensus       127 ~~~-~~~~~~  135 (143)
                      +++ +..|+.
T Consensus       227 l~~~g~~p~~  236 (293)
T cd05053         227 IFTLGGSPYP  236 (293)
T ss_pred             HhcCCCCCCC
Confidence            886 655544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.95  E-value=1.3e-27  Score=159.50  Aligned_cols=133  Identities=20%  Similarity=0.274  Sum_probs=113.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+.+++.+++++||++++++.+.+.......++......++.|++.|+.+||+   .+++|+|++|.
T Consensus        53 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dl~p~  129 (255)
T cd08219          53 AKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHE---KRVLHRDIKSK  129 (255)
T ss_pred             HhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCcc
Confidence            567999999999999999999999999999999998865444567888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                  |+......++.++|+||+|+++|+|+++..|+...
T Consensus       130 nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~  203 (255)
T cd08219         130 NIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQAN  203 (255)
T ss_pred             eEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCC
Confidence            999999999999999876422                  22223345678899999999999999988777644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.95  E-value=9.7e-28  Score=161.87  Aligned_cols=131  Identities=24%  Similarity=0.370  Sum_probs=108.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC--------CCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK--------PPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      +.++|+||+++++++.++...+++|||+++++|.+++.+...        ..+.+..+..++.|++.|+.|||+   .++
T Consensus        64 ~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~~  140 (277)
T cd05062          64 KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNA---NKF  140 (277)
T ss_pred             HhCCCCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCc
Confidence            567899999999999988999999999999999998854321        234567788899999999999998   899


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhcccc-ccC
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM-LPM  132 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~  132 (143)
                      +|+|++|+||+++.++.++++|||.+.                    .+|+......++.++|+|||||++|||++ +..
T Consensus       141 vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~  220 (277)
T cd05062         141 VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ  220 (277)
T ss_pred             ccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999998653                    12333334567889999999999999998 455


Q ss_pred             CCC
Q 041845          133 AEN  135 (143)
Q Consensus       133 ~~~  135 (143)
                      |+.
T Consensus       221 p~~  223 (277)
T cd05062         221 PYQ  223 (277)
T ss_pred             CCC
Confidence            554

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.95  E-value=1.5e-27  Score=161.29  Aligned_cols=131  Identities=27%  Similarity=0.381  Sum_probs=108.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+++++++. ....++++||+++++|.+.+... ...+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        63 l~~l~h~~iv~~~~~~~-~~~~~~i~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp  137 (279)
T cd05111          63 MGSLDHAYIVRLLGICP-GASLQLVTQLSPLGSLLDHVRQH-RDSLDPQRLLNWCVQIAKGMYYLEE---HRMVHRNLAA  137 (279)
T ss_pred             HhcCCCCCcceEEEEEC-CCccEEEEEeCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHH---CCEeccccCc
Confidence            35789999999999875 44577899999999999998543 3467888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .||+++.++.+|++|||.+...                    |+......++.++|+||||+++||+++ +..|+..
T Consensus       138 ~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~  214 (279)
T cd05111         138 RNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAG  214 (279)
T ss_pred             ceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999999876432                    222233567788999999999999997 7766654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.94  E-value=1.3e-27  Score=163.74  Aligned_cols=131  Identities=25%  Similarity=0.299  Sum_probs=111.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..++++||+++++|.+++.+.  ..+++.....++.|++.|+.|||+  ..+++|+|++|
T Consensus        53 l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~--~~~i~H~dl~p  128 (308)
T cd06615          53 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLRE--KHKIMHRDVKP  128 (308)
T ss_pred             HHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh--hCCEEECCCCh
Confidence            35689999999999999999999999999999999998543  467888899999999999999996  24899999999


Q ss_pred             CcEEEcCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      .||+++.++.++++|||.+..                +|+......++.++|+||||+++|+|+++..|+.
T Consensus       129 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~  199 (308)
T cd06615         129 SNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIP  199 (308)
T ss_pred             HHEEEecCCcEEEccCCCcccccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999986542                1222334457788999999999999999877765

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.94  E-value=1.1e-27  Score=160.13  Aligned_cols=131  Identities=23%  Similarity=0.312  Sum_probs=108.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+||+++++++. ....+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        49 l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp  123 (257)
T cd05115          49 MHQLDNPYIVRMIGVCE-AEALMLVMEMASGGPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLEG---KNFVHRDLAA  123 (257)
T ss_pred             HHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHh---cCeeecccch
Confidence            35789999999999885 45788999999999999988543 3467889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .||+++.++.++++|||.+...                     |+......++.++|+||||+++|++++ +..|+..
T Consensus       124 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~  201 (257)
T cd05115         124 RNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKK  201 (257)
T ss_pred             heEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCc
Confidence            9999999999999999865321                     222233456778999999999999885 7666643

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.94  E-value=1.8e-27  Score=160.55  Aligned_cols=131  Identities=24%  Similarity=0.299  Sum_probs=105.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+++++++.+++..++||||+++++|..++.+. ...+++.+...++.|++.|+.|+|+   .+++|+||+|
T Consensus        70 ~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~iiH~dlkp  145 (274)
T cd05076          70 MSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKE-KGRVPVAWKITVAQQLASALSYLED---KNLVHGNVCA  145 (274)
T ss_pred             HhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHc---CCccCCCCCc
Confidence            35789999999999999999999999999999999888543 3467888899999999999999998   8999999999


Q ss_pred             CcEEEcCCC-------cccccccchhh--------------ccccccCC-CCCCCcccchhhhhhhhccc-cccCCCC
Q 041845           81 TNILLDENW-------VAKHSRERQLR--------------LLGSRILP-AKLTEKSDVYSFGVLCARPA-MLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~-------~~k~~~~~~~~--------------~~~~~~~~-~~~~~~~Di~s~G~~~~~~~-~~~~~~~  135 (143)
                      +||+++..+       ..++.|||...              .+|+.+.. ..++.++|+||||+++||++ ++..|+.
T Consensus       146 ~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~  223 (274)
T cd05076         146 KNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLK  223 (274)
T ss_pred             ccEEEeccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCcc
Confidence            999997643       36788887542              12222222 35688999999999999985 4555554

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=9.4e-28  Score=169.23  Aligned_cols=130  Identities=24%  Similarity=0.221  Sum_probs=110.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++.+......+++||++. +++.+++..  ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus       140 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~--~~~l~~~~~~~i~~ql~~aL~~LH~---~givHrDlkp  213 (392)
T PHA03207        140 LKTISHRAIINLIHAYRWKSTVCMVMPKYK-CDLFTYVDR--SGPLPLEQAITIQRRLLEALAYLHG---RGIIHRDVKT  213 (392)
T ss_pred             HHhcCCCCccceeeeEeeCCEEEEEehhcC-CCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCH
Confidence            467899999999999998899999999996 588888833  3468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++..+.++++|||.+..                    +|+.+....++.++|+||+||++|||+++..|+..
T Consensus       214 ~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  289 (392)
T PHA03207        214 ENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFG  289 (392)
T ss_pred             HHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            999999999999999997532                    22333445678899999999999999998777653

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=8.6e-28  Score=181.62  Aligned_cols=131  Identities=26%  Similarity=0.276  Sum_probs=109.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |..++|||+|+++|+-.++...+|+||||++|+|.+.+..  +...++.-...+..|++.|+.|||+   .+|+|||+||
T Consensus      1288 lE~lnHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~--gri~dE~vt~vyt~qll~gla~LH~---~gIVHRDIK~ 1362 (1509)
T KOG4645|consen 1288 LEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEH--GRIEDEMVTRVYTKQLLEGLAYLHE---HGIVHRDIKP 1362 (1509)
T ss_pred             HHhccCccccccCceeecHHHHHHHHHHhccCcHHHHHHh--cchhhhhHHHHHHHHHHHHHHHHHh---cCceecCCCc
Confidence            3468999999999999999999999999999999998843  3355666667788899999999997   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc----------------------ccccCC---CCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL----------------------GSRILP---AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~---~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.+|.+|.+|||.+...                      |+.+.+   +.-..++||||+||++.||+||..|+.
T Consensus      1363 aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~ 1442 (1509)
T KOG4645|consen 1363 ANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWA 1442 (1509)
T ss_pred             cceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchh
Confidence            9999999999999999987422                      111111   122357899999999999999999887


Q ss_pred             c
Q 041845          136 E  136 (143)
Q Consensus       136 ~  136 (143)
                      +
T Consensus      1443 ~ 1443 (1509)
T KOG4645|consen 1443 E 1443 (1509)
T ss_pred             h
Confidence            5

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=6.5e-28  Score=170.93  Aligned_cols=135  Identities=23%  Similarity=0.279  Sum_probs=115.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||||+++++..++..+|+||||+.+|.+.+++.+.+  ...+..+..++.|++.|+.|||+   +.++|||||+
T Consensus       109 mk~l~HPnIvkl~~v~~t~~~lylV~eya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsaveYcH~---k~ivHrdLk~  183 (596)
T KOG0586|consen  109 MKSLNHPNIVKLFSVIETEATLYLVMEYASGGELFDYLVKHG--RMKEKEARAKFRQIVSAVEYCHS---KNIVHRDLKA  183 (596)
T ss_pred             HHhcCCcceeeeeeeeeecceeEEEEEeccCchhHHHHHhcc--cchhhhhhhhhHHHHHHHHHHhh---cceeccccch
Confidence            567899999999999999999999999999999999996554  45558889999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc-----------------cccCCCCC-CCcccchhhhhhhhccccccCCCCccccc
Q 041845           81 TNILLDENWVAKHSRERQLRLLG-----------------SRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQEVE  140 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~-----------------~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~~~~  140 (143)
                      +|++++.+.++||+|||+..+..                 +.+.+..+ .+.+|+||+|+++|.+..+-+|++.+...
T Consensus       184 eNilL~~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk  261 (596)
T KOG0586|consen  184 ENILLDENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLK  261 (596)
T ss_pred             hhcccccccceeeeccccceeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccc
Confidence            99999999999999999876432                 11223333 57899999999999999999999876543

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.94  E-value=1.8e-27  Score=161.28  Aligned_cols=130  Identities=24%  Similarity=0.295  Sum_probs=108.1

Q ss_pred             CCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++||||+++++++...     ...++++|++++ ++.+++.......+++..+..++.|++.|+.|+|+   .+++|+
T Consensus        57 ~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~  132 (288)
T cd07863          57 EAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHR  132 (288)
T ss_pred             hhcCCCCeeeeeeeeccccCCCCceEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecC
Confidence            345799999999988642     357899999975 88888865554568899999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |++|+||+++.++.++++|||.+..                 +|+......++.++|+||+||++|+|+++..++.
T Consensus       133 dikp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~  208 (288)
T cd07863         133 DLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFC  208 (288)
T ss_pred             CCCHHHEEECCCCCEEECccCccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcC
Confidence            9999999999999999999987542                 2333445567889999999999999998776654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.94  E-value=1.5e-27  Score=162.92  Aligned_cols=131  Identities=24%  Similarity=0.312  Sum_probs=110.8

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++ +|+||+++++.+...+..++++||+++++|.+++.+.....+++.+...++.|++.++.|+|+   .+++|+|++|
T Consensus        93 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---~~ivH~dlkp  169 (302)
T cd05055          93 SHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAA  169 (302)
T ss_pred             HhccCCCCcceEEEEEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeehhhhcc
Confidence            456 799999999999999999999999999999999865444457899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .||+++.++.++++|||.+...                    |+......++.++|+||+||++|+|++ +..|+.
T Consensus       170 ~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~  245 (302)
T cd05055         170 RNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYP  245 (302)
T ss_pred             ceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcC
Confidence            9999999999999999876422                    222333456788999999999999997 666654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.94  E-value=2.1e-27  Score=160.65  Aligned_cols=129  Identities=28%  Similarity=0.378  Sum_probs=108.5

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++++...  ...+++|||+++++|.+++...   .+++..+..++.|++.|+.|||+   ++++|+|+
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~---~~i~H~dl  133 (283)
T cd05080          60 LKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHS---QHYIHRDL  133 (283)
T ss_pred             HHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHH---CCeecccc
Confidence            4578999999999987653  4688999999999999988543   58899999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +|+||+++.++.+++.|||.+...                     |+......++.++|+||||+++|+|+++..|+.
T Consensus       134 kp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~  211 (283)
T cd05080         134 AARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQ  211 (283)
T ss_pred             ChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999876422                     222233556789999999999999999766653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=2.1e-27  Score=160.01  Aligned_cols=132  Identities=24%  Similarity=0.352  Sum_probs=110.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------KPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      |+.++|+||+++++++..+...+++|||+++++|.+++....        ...+++..+..++.|++.|+.|||+   .+
T Consensus        63 l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~  139 (277)
T cd05032          63 MKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAA---KK  139 (277)
T ss_pred             HHhCCCCceeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            356799999999999999999999999999999999985432        1235678889999999999999997   89


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-cc
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LP  131 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~  131 (143)
                      ++|+|++|+||+++.++.++++|||.+..                    +|+......++.++|+|||||++||+++ +.
T Consensus       140 i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~  219 (277)
T cd05032         140 FVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAE  219 (277)
T ss_pred             ccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCC
Confidence            99999999999999999999999986532                    2233334567889999999999999997 55


Q ss_pred             CCCC
Q 041845          132 MAEN  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      .|+.
T Consensus       220 ~p~~  223 (277)
T cd05032         220 QPYQ  223 (277)
T ss_pred             CCCc
Confidence            5553

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.94  E-value=1.6e-27  Score=161.57  Aligned_cols=133  Identities=23%  Similarity=0.212  Sum_probs=114.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++.+.+..++..++++||+++++|...+.......+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        54 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~---~~iiH~dikp  130 (285)
T cd05632          54 LEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHR---ENTVYRDLKP  130 (285)
T ss_pred             HHHcCCcCceeEEEEEecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCH
Confidence            3568999999999999999999999999999999988865444568899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||++++++.++++|||.+..                 +|+......++.++|+||+|+++|+++++..|+..
T Consensus       131 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~  203 (285)
T cd05632         131 ENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRG  203 (285)
T ss_pred             HHEEECCCCCEEEecCCcceecCCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999996632                 22233345678889999999999999998888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.94  E-value=2e-27  Score=160.36  Aligned_cols=133  Identities=32%  Similarity=0.357  Sum_probs=109.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-----CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-----PPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      ++.++|+||+++++++.+....+++|||+++++|.+++.....     ..+++.....++.|++.++.|||+   .+++|
T Consensus        63 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH  139 (277)
T cd05036          63 MSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEE---NHFIH  139 (277)
T ss_pred             HHhCCCCCEeeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEee
Confidence            3578999999999999988899999999999999998854321     257888899999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCC---cccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-cc
Q 041845           76 RDVKSTNILLDENW---VAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LP  131 (143)
Q Consensus        76 ~~l~~~nil~~~~~---~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~  131 (143)
                      +|++|+||+++..+   .++++|||.+..                    +|+.+....++.++|+|||||++|+|++ +.
T Consensus       140 ~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~  219 (277)
T cd05036         140 RDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGY  219 (277)
T ss_pred             cccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCC
Confidence            99999999998654   578999986532                    2233344567889999999999999986 76


Q ss_pred             CCCCc
Q 041845          132 MAENE  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      .|++.
T Consensus       220 ~pf~~  224 (277)
T cd05036         220 MPYPG  224 (277)
T ss_pred             CCCCC
Confidence            66653

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.94  E-value=2.4e-27  Score=157.65  Aligned_cols=130  Identities=26%  Similarity=0.341  Sum_probs=110.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+...+..+++|||+++++|.+++... ...+++.....++.+++.++.|+|+   .+++|+|++|+
T Consensus        47 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~~~H~dl~p~  122 (250)
T cd05085          47 KQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKK-KDELKTKQLVKFALDAAAGMAYLES---KNCIHRDLAAR  122 (250)
T ss_pred             HhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccChh
Confidence            5679999999999999999999999999999999988543 3457888999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      ||+++.++.+++.|||.+..                   +|+......++.++|+||||+++|++++ +..|+.
T Consensus       123 nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~  196 (250)
T cd05085         123 NCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYP  196 (250)
T ss_pred             eEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999999986532                   2222334556788999999999999987 666654

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.94  E-value=2.1e-27  Score=159.68  Aligned_cols=132  Identities=22%  Similarity=0.222  Sum_probs=106.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC---CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH---KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      +++++||||+++++.+.+....+++|||+++++|.+++....   ....++..+..++.|++.|+.|||+   .+++|+|
T Consensus        49 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~d  125 (269)
T cd05087          49 YRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHK---NNFIHSD  125 (269)
T ss_pred             HHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCEeccc
Confidence            356899999999999999899999999999999999985432   1244566778899999999999998   8999999


Q ss_pred             CCCCcEEEcCCCcccccccchhhcc-------------------ccccCC--------CCCCCcccchhhhhhhhcccc-
Q 041845           78 VKSTNILLDENWVAKHSRERQLRLL-------------------GSRILP--------AKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        78 l~~~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~--------~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                      ++|+||+++..+.++++|||.+...                   +++...        ..++.++|+||||+++|||++ 
T Consensus       126 lkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~  205 (269)
T cd05087         126 LALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFEL  205 (269)
T ss_pred             cCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhC
Confidence            9999999999999999999866321                   111111        124678999999999999985 


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..|++
T Consensus       206 g~~p~~  211 (269)
T cd05087         206 GSQPYR  211 (269)
T ss_pred             CCCCCC
Confidence            766664

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.94  E-value=1.2e-27  Score=163.99  Aligned_cols=133  Identities=25%  Similarity=0.289  Sum_probs=112.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++.+++..++++||++++++.+++.......+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~---~~ivH~dlk~  129 (314)
T cd08216          53 SRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHS---KGFIHRSVKA  129 (314)
T ss_pred             HHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCc
Confidence            3568999999999999999999999999999999999865544567888899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh-------------------------ccccccCC--CCCCCcccchhhhhhhhccccccCC
Q 041845           81 TNILLDENWVAKHSRERQLR-------------------------LLGSRILP--AKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~-------------------------~~~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      +||+++.++.+++.||+...                         .+|+....  ..++.++|+||+||++|+|+++..|
T Consensus       130 ~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~p  209 (314)
T cd08216         130 SHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVP  209 (314)
T ss_pred             ceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCC
Confidence            99999999999999987542                         11221222  2467889999999999999998777


Q ss_pred             CCc
Q 041845          134 ENE  136 (143)
Q Consensus       134 ~~~  136 (143)
                      +..
T Consensus       210 f~~  212 (314)
T cd08216         210 FKD  212 (314)
T ss_pred             CCC
Confidence            763

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.94  E-value=2.1e-27  Score=160.27  Aligned_cols=132  Identities=28%  Similarity=0.386  Sum_probs=111.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC------------CCCCcHHHHHHHHHHHHHHHhHhhcC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH------------KPPLQWMWRLKICIGAARGLHYLHTG   68 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~lh~~   68 (143)
                      |+.++|+||+++++++......+++|||+++++|.+++....            ...+++..+..++.|++.++.++|+ 
T Consensus        62 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~-  140 (280)
T cd05049          62 LTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLAS-  140 (280)
T ss_pred             HHhcCCCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhh-
Confidence            356899999999999999999999999999999999985432            2346778889999999999999997 


Q ss_pred             CCCCeeecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhccc
Q 041845           69 TRNTIIHRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        69 ~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                        .+++|+|++|.||+++.++.++++|||.+.                    .+|+......++.++|+||+||++|+|+
T Consensus       141 --~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~  218 (280)
T cd05049         141 --QHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIF  218 (280)
T ss_pred             --CCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHH
Confidence              899999999999999999999999998653                    1233334456788999999999999999


Q ss_pred             c-ccCCCC
Q 041845          129 M-LPMAEN  135 (143)
Q Consensus       129 ~-~~~~~~  135 (143)
                      + +..|+.
T Consensus       219 ~~g~~p~~  226 (280)
T cd05049         219 TYGKQPWY  226 (280)
T ss_pred             hcCCCCCC
Confidence            7 766654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.94  E-value=9.5e-28  Score=167.10  Aligned_cols=126  Identities=23%  Similarity=0.285  Sum_probs=103.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++...+.++++|||+++++|....      ...+.....++.|++.|+.|||+   .+++|+||+|
T Consensus       126 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp  196 (353)
T PLN00034        126 LRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTH------IADEQFLADVARQILSGIAYLHR---RHIVHRDIKP  196 (353)
T ss_pred             HHhCCCCCcceeeeEeccCCeEEEEEecCCCCcccccc------cCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCH
Confidence            35689999999999999999999999999999886432      34566778899999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccC-----CCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRIL-----PAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++.+|++|||.+...                  ++.+.     ....+.++|||||||++|||+++..|+.
T Consensus       197 ~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~  274 (353)
T PLN00034        197 SNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFG  274 (353)
T ss_pred             HHEEEcCCCCEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999976421                  11111     1112358999999999999999888875

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.94  E-value=3e-27  Score=158.98  Aligned_cols=127  Identities=22%  Similarity=0.179  Sum_probs=111.3

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +|||++++++.+..++..+++|||+++++|.+++.++.  .+++..+..++.|++.|+.++|+   .+++|+|++|+||+
T Consensus        67 ~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~nil  141 (267)
T PHA03390         67 DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHK---HNIIHNDIKLENVL  141 (267)
T ss_pred             cCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHHHEE
Confidence            69999999999999999999999999999999986543  78899999999999999999998   89999999999999


Q ss_pred             EcCCC-cccccccchhh--------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDENW-VAKHSRERQLR--------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~~~-~~k~~~~~~~~--------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ++.++ .++++|||.+.              .+|+......++.++|+||+|+++|+|+++..|+..
T Consensus       142 ~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  208 (267)
T PHA03390        142 YDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKE  208 (267)
T ss_pred             EeCCCCeEEEecCccceecCCCccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            99888 89999998653              233434456778899999999999999998877753

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.94  E-value=1.4e-27  Score=168.63  Aligned_cols=131  Identities=24%  Similarity=0.302  Sum_probs=107.8

Q ss_pred             CCCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------------------------------
Q 041845            2 SNLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------------------------------   42 (143)
Q Consensus         2 ~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------------------------------   42 (143)
                      +.+. ||||+++++++.+....++||||+++|+|.+++..+.                                      
T Consensus        95 ~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (400)
T cd05105          95 THLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENK  174 (400)
T ss_pred             HhcCCCCCeeeEEEEEccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhccc
Confidence            4564 9999999999999999999999999999998874321                                      


Q ss_pred             --------------------------------------------------------CCCCcHHHHHHHHHHHHHHHhHhh
Q 041845           43 --------------------------------------------------------KPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus        43 --------------------------------------------------------~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                                                                              ...+++..+..++.|++.|+.|||
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH  254 (400)
T cd05105         175 GDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA  254 (400)
T ss_pred             ccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                                                    123566777889999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~  126 (143)
                      +   .+++|+|++|+||+++.++.++++|||.+..                    +|+......++.++|||||||++|+
T Consensus       255 ~---~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~e  331 (400)
T cd05105         255 S---KNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWE  331 (400)
T ss_pred             h---CCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHH
Confidence            7   8999999999999999999999999986532                    2233344567889999999999999


Q ss_pred             ccc-ccCCCC
Q 041845          127 PAM-LPMAEN  135 (143)
Q Consensus       127 ~~~-~~~~~~  135 (143)
                      |++ +..|+.
T Consensus       332 llt~g~~P~~  341 (400)
T cd05105         332 IFSLGGTPYP  341 (400)
T ss_pred             HHHCCCCCCc
Confidence            986 555554

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.94  E-value=2.3e-27  Score=158.25  Aligned_cols=133  Identities=21%  Similarity=0.310  Sum_probs=113.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+||+++++++.+.+..++++||+++++|.+.+.+.....+++..+..++.|++.++.|||+   .+++|+|++|
T Consensus        53 l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p  129 (256)
T cd08221          53 LSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK---AGILHRDIKT  129 (256)
T ss_pred             HHhCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCh
Confidence            3568999999999999999999999999999999999965545567889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                  |+......++.++|+||+|+++|+|+++..++..
T Consensus       130 ~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~  203 (256)
T cd08221         130 LNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDA  203 (256)
T ss_pred             HhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCC
Confidence            9999999999999999865432                  2222333567789999999999999998766654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.94  E-value=3.1e-27  Score=158.77  Aligned_cols=131  Identities=24%  Similarity=0.360  Sum_probs=110.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+++.+++.++...++++||+++++|.+++... ...+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        59 l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH~---~g~~H~dl~p  134 (269)
T cd05065          59 MGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAA  134 (269)
T ss_pred             HHhCCCcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCh
Confidence            35689999999999999999999999999999999988544 3467888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .||+++.++.+++.|||....                       .|+......++.++|+||+||++||+++ +..|+.
T Consensus       135 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~  213 (269)
T cd05065         135 RNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW  213 (269)
T ss_pred             heEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCC
Confidence            999999999999999986532                       1222334456788999999999999775 666654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.94  E-value=1.7e-27  Score=159.84  Aligned_cols=132  Identities=31%  Similarity=0.420  Sum_probs=110.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC-----CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN-----HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |+.++||||+++++++......++++||+++++|.+++.+.     ....+++..+..++.|++.|+.|+|+   .+++|
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H  129 (269)
T cd05044          53 MSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ---MHFIH  129 (269)
T ss_pred             HHhcCCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHh---CCccc
Confidence            46789999999999999988999999999999999988543     12346788889999999999999997   89999


Q ss_pred             cCCCCCcEEEcCCC-----cccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhcccc-
Q 041845           76 RDVKSTNILLDENW-----VAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        76 ~~l~~~nil~~~~~-----~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                      +|++|+||+++.++     .+++.|||.+.                    .+|+......++.++|+|||||++|+|++ 
T Consensus       130 ~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~  209 (269)
T cd05044         130 RDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTL  209 (269)
T ss_pred             CCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHc
Confidence            99999999999877     78999998653                    12333444567889999999999999997 


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..|+.
T Consensus       210 g~~p~~  215 (269)
T cd05044         210 GQQPYP  215 (269)
T ss_pred             CCCCCc
Confidence            666654

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.5e-27  Score=163.62  Aligned_cols=134  Identities=22%  Similarity=0.144  Sum_probs=114.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++.+.++...+++|||+.+++|.+.+.......+++.....++.|++.++.|||+   .+++|+|++|
T Consensus        55 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp  131 (316)
T cd05574          55 LATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHL---LGIVYRDLKP  131 (316)
T ss_pred             HHhCCCCCchhheeeeecCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCh
Confidence            3567899999999999999999999999999999999865555678889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------------------------------------cccccCCCCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------------------------------------LGSRILPAKLTE  113 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~  113 (143)
                      +||+++.++.+++.|||.+..                                               +|+......++.
T Consensus       132 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~  211 (316)
T cd05574         132 ENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGS  211 (316)
T ss_pred             HHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCc
Confidence            999999999999999986432                                               122223345677


Q ss_pred             cccchhhhhhhhccccccCCCCcc
Q 041845          114 KSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       114 ~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++|+||||+++|+++++..|+...
T Consensus       212 ~~Di~slG~ll~~l~~g~~pf~~~  235 (316)
T cd05574         212 AVDWWTLGILLYEMLYGTTPFKGS  235 (316)
T ss_pred             hHHHHHHHHHHHHHhhCCCCCCCC
Confidence            899999999999999988887543

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.94  E-value=2.1e-27  Score=162.97  Aligned_cols=131  Identities=24%  Similarity=0.382  Sum_probs=108.9

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      +++ +||||+++++++...+..++++||+++++|.+++....              ...+++.....++.|++.|+.|+|
T Consensus        72 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH  151 (314)
T cd05099          72 KLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE  151 (314)
T ss_pred             HhccCCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            345 69999999999998889999999999999999985432              134677888999999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~  126 (143)
                      +   .+++|+|++|+||+++.++.++++|||.+...                    |+......++.++|+||||+++|+
T Consensus       152 ~---~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~e  228 (314)
T cd05099         152 S---RRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWE  228 (314)
T ss_pred             H---CCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHH
Confidence            7   89999999999999999999999999876422                    222334567789999999999999


Q ss_pred             ccc-ccCCCC
Q 041845          127 PAM-LPMAEN  135 (143)
Q Consensus       127 ~~~-~~~~~~  135 (143)
                      +++ +..|+.
T Consensus       229 l~~~g~~p~~  238 (314)
T cd05099         229 IFTLGGSPYP  238 (314)
T ss_pred             HHhCCCCCCC
Confidence            988 555543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.94  E-value=2.4e-27  Score=158.20  Aligned_cols=130  Identities=28%  Similarity=0.339  Sum_probs=107.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.. ...++++||+++++|.+++.... ..+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        55 l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dlkp  129 (259)
T cd05037          55 MSQLSHKHLVKLYGVCVR-DENIMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLED---KKLVHGNVCG  129 (259)
T ss_pred             HHcCCCcchhheeeEEec-CCcEEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhh---CCeecccCcc
Confidence            467899999999999988 77899999999999999986543 267888899999999999999997   8999999999


Q ss_pred             CcEEEcCCC-------cccccccchhhc--------------cccccCCC--CCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENW-------VAKHSRERQLRL--------------LGSRILPA--KLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~-------~~k~~~~~~~~~--------------~~~~~~~~--~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .||+++..+       .++++|||.+..              +|+.+...  .++.++|+||+|+++|++++ +..|+.
T Consensus       130 ~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~  208 (259)
T cd05037         130 KNILVARYGLNEGYVPFIKLSDPGIPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLS  208 (259)
T ss_pred             ceEEEecCccccCCceeEEeCCCCcccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcc
Confidence            999999877       789999987543              12222233  57788999999999999988 455543

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.94  E-value=2.4e-27  Score=158.33  Aligned_cols=132  Identities=31%  Similarity=0.423  Sum_probs=110.7

Q ss_pred             CCCCCCCCcceeeEEee-cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHV-ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      ++.++|+|++++++++. +++..++++||+++++|.+++.+.....+++.....++.|++.++.+||+   .+++|+|++
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlk  129 (256)
T cd05082          53 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEA---NNFVHRDLA  129 (256)
T ss_pred             HHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccccc
Confidence            35789999999999765 45678999999999999999876555557888999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      |.||+++.++.++++|||.+..               +|+......++.++|+|||||++|+|++ +..|+.
T Consensus       130 p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~  201 (256)
T cd05082         130 ARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  201 (256)
T ss_pred             hheEEEcCCCcEEecCCccceeccccCCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999986542               2333344567889999999999999997 666654

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.94  E-value=2.2e-27  Score=161.75  Aligned_cols=130  Identities=21%  Similarity=0.281  Sum_probs=111.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+..+...++|+||+++++|.+++.+.   .+++.....++.|++.|+.|||+   .+++|+||+|+
T Consensus        72 ~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~LH~---~gi~H~dLkp~  145 (296)
T cd06654          72 RENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSD  145 (296)
T ss_pred             HhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHH
Confidence            5678999999999999999999999999999999988432   56788889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+++.|||.+..                  +|+......++.++|+|||||++|+|+++..|+...
T Consensus       146 Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~  219 (296)
T cd06654         146 NILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (296)
T ss_pred             HEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999986532                  122233445678999999999999999988877543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.94  E-value=4e-27  Score=158.02  Aligned_cols=131  Identities=26%  Similarity=0.356  Sum_probs=111.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++.+.+.+..+++|||+++++|.+++.... ..+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        59 l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~di~p  134 (266)
T cd05033          59 MGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSE---MNYVHRDLAA  134 (266)
T ss_pred             HHhCCCCCcceEeEEEecCCceEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCc
Confidence            357899999999999999999999999999999999985533 367889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .||+++.++.++++|||.+...                    |+......++.++|+||||+++|++++ +..|+.
T Consensus       135 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~  210 (266)
T cd05033         135 RNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYW  210 (266)
T ss_pred             ceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCC
Confidence            9999999999999999866432                    222333566788999999999999887 666654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.94  E-value=2.5e-27  Score=158.17  Aligned_cols=131  Identities=24%  Similarity=0.305  Sum_probs=111.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++.+.. ...++++||+++++|.+.+.+.....+++.....++.|++.|+.|+|+   ++++|+|++|
T Consensus        50 l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~di~p  125 (257)
T cd05040          50 MHSLDHENLIRLYGVVLT-HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLES---KRFIHRDLAA  125 (257)
T ss_pred             HhhcCCCCccceeEEEcC-CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHh---CCccccccCc
Confidence            467899999999999988 889999999999999999865543467889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      +||+++.++.++++|||.....                     |+......++.++|+||+||++|+|++ +..|+.
T Consensus       126 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  202 (257)
T cd05040         126 RNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWA  202 (257)
T ss_pred             ccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999865422                     222223456788999999999999997 777764

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.94  E-value=3e-27  Score=158.72  Aligned_cols=131  Identities=25%  Similarity=0.338  Sum_probs=111.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++|+|++++.+++.+.+..+++|||+++++|.+++... ...+++.....++.|++.|+.|+|+   .+++|+|++|
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dlkp  135 (268)
T cd05063          60 MGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDH-DGEFSSYQLVGMLRGIAAGMKYLSD---MNYVHRDLAA  135 (268)
T ss_pred             HhcCCCCCeeEEEEEEccCCCcEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccch
Confidence            35789999999999999999999999999999999998543 3467888899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      +||+++.++..+++|||.....                     |+......++.++|+|||||++||+++ +..|+.
T Consensus       136 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~  212 (268)
T cd05063         136 RNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYW  212 (268)
T ss_pred             hhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999866422                     222333456788999999999999886 766664

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=1.2e-27  Score=166.92  Aligned_cols=126  Identities=25%  Similarity=0.313  Sum_probs=108.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+||+++++++..+...++++|++. +++.+++... ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus       111 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp  185 (357)
T PHA03209        111 LQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLYTYLTKR-SRPLPIDQALIIEKQILEGLRYLHA---QRIIHRDVKT  185 (357)
T ss_pred             HHhCCCCCCcChhheEEeCCeeEEEEEccC-CcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            467899999999999999999999999995 5888887543 3467889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +||+++..+.++++|||.+..                 +|+......++.++|+|||||++|||++++
T Consensus       186 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~  253 (357)
T PHA03209        186 ENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYP  253 (357)
T ss_pred             HHEEECCCCCEEEecCccccccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcC
Confidence            999999999999999997642                 233344567789999999999999998743

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.94  E-value=2.1e-27  Score=161.21  Aligned_cols=133  Identities=25%  Similarity=0.338  Sum_probs=110.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC----------------------CCCCcHHHHHHHHHHH
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH----------------------KPPLQWMWRLKICIGA   58 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~i   58 (143)
                      |+.++||||+++++.+..++..++++||+.+++|.+++....                      ...+++.....++.|+
T Consensus        57 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i  136 (290)
T cd05045          57 LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQI  136 (290)
T ss_pred             HhhCCCCCEeeEEEEEecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHH
Confidence            357899999999999999999999999999999999875321                      1346778889999999


Q ss_pred             HHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccch
Q 041845           59 ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVY  118 (143)
Q Consensus        59 ~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~  118 (143)
                      +.++.|||+   .+++|+|++|+||++++++.+++.|||.+...                    |+......++.++|+|
T Consensus       137 ~~~l~~LH~---~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~  213 (290)
T cd05045         137 SRGMQYLAE---MKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVW  213 (290)
T ss_pred             HHHHHHHHH---CCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHH
Confidence            999999997   89999999999999999999999999876421                    2223344567889999


Q ss_pred             hhhhhhhcccc-ccCCCCc
Q 041845          119 SFGVLCARPAM-LPMAENE  136 (143)
Q Consensus       119 s~G~~~~~~~~-~~~~~~~  136 (143)
                      |||+++|+|++ +..|++.
T Consensus       214 slG~~l~el~t~g~~p~~~  232 (290)
T cd05045         214 SFGVLLWEIVTLGGNPYPG  232 (290)
T ss_pred             HHHHHHHHHHhcCCCCCCC
Confidence            99999999998 7666653

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.94  E-value=6.3e-28  Score=160.30  Aligned_cols=129  Identities=26%  Similarity=0.383  Sum_probs=108.3

Q ss_pred             CCCCCCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcC---CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            1 LSNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNN---HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +++++|||++.+..+|.+ +..+++++||++. +|.+++.-.   ....++-..+++++.|++.++.|||+   +=++||
T Consensus        81 ~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~---NWvlHR  156 (438)
T KOG0666|consen   81 LRELKHPNVISLVKVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHS---NWVLHR  156 (438)
T ss_pred             HHHhcCCcchhHHHHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhh---hheeec
Confidence            467899999999999987 8899999999987 999988422   22466778899999999999999998   779999


Q ss_pred             CCCCCcEEEcCC----Ccccccccchhhcccccc---------------------C-CCCCCCcccchhhhhhhhccccc
Q 041845           77 DVKSTNILLDEN----WVAKHSRERQLRLLGSRI---------------------L-PAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        77 ~l~~~nil~~~~----~~~k~~~~~~~~~~~~~~---------------------~-~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      ||||.||++..+    |.+|+.|+|+++.....+                     + ...|+++.|+||+||++.|+++.
T Consensus       157 DLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl  236 (438)
T KOG0666|consen  157 DLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTL  236 (438)
T ss_pred             cCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHcc
Confidence            999999999877    899999999988543332                     2 24689999999999999999985


Q ss_pred             cCC
Q 041845          131 PMA  133 (143)
Q Consensus       131 ~~~  133 (143)
                      ..-
T Consensus       237 ~Pl  239 (438)
T KOG0666|consen  237 EPL  239 (438)
T ss_pred             Ccc
Confidence            433

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.94  E-value=3.1e-27  Score=158.65  Aligned_cols=131  Identities=25%  Similarity=0.353  Sum_probs=110.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..+++|||+++++|.+++.+.. ..+++.....++.|++.|+.+||+   .+++|+|++|
T Consensus        59 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~---~~i~h~dlkp  134 (267)
T cd05066          59 MGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAA  134 (267)
T ss_pred             HHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCEeehhhch
Confidence            356899999999999999999999999999999999986443 467888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      +|++++.++.+++.|||.+..                     +|+......++.++|+||||+++|++++ +..|+.
T Consensus       135 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~  211 (267)
T cd05066         135 RNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW  211 (267)
T ss_pred             hcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcc
Confidence            999999999999999986532                     1222333566789999999999999775 666654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.94  E-value=4.5e-27  Score=157.31  Aligned_cols=130  Identities=25%  Similarity=0.368  Sum_probs=105.6

Q ss_pred             CCCCCCCCcceeeEEee-cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHV-ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      ++.++||||+++++.+. .++..++++||+++++|.+++.+.. ....+.....++.|++.|+.|||+   .+++|+|++
T Consensus        50 l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlk  125 (262)
T cd05058          50 MKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLAS---KKFVHRDLA  125 (262)
T ss_pred             HccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh---CCccccccC
Confidence            46789999999999775 4556889999999999999985432 345667778889999999999997   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc----------------------cccccCCCCCCCcccchhhhhhhhccccc-cCCC
Q 041845           80 STNILLDENWVAKHSRERQLRL----------------------LGSRILPAKLTEKSDVYSFGVLCARPAML-PMAE  134 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~----------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~-~~~~  134 (143)
                      |+||+++.++.++++|||.+..                      +|+......++.++|+|||||++|||+++ ..++
T Consensus       126 ~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~  203 (262)
T cd05058         126 ARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPY  203 (262)
T ss_pred             cceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999997642                      12223345667889999999999999984 3343

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.94  E-value=2.7e-27  Score=161.83  Aligned_cols=129  Identities=18%  Similarity=0.173  Sum_probs=111.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+.+++..+++|||+++++|.+++...  ..+++.....++.|++.|+.|+|+   .+++|+|++|.
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~  130 (305)
T cd05609          56 TFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHN---YGIVHRDLKPD  130 (305)
T ss_pred             HhCCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchH
Confidence            5678999999999999999999999999999999998544  367888888999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc---------------------------------cccccCCCCCCCcccchhhhhhhhccc
Q 041845           82 NILLDENWVAKHSRERQLRL---------------------------------LGSRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~---------------------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      ||+++..+.+++.|||....                                 +|+.+....++.++|+|||||++|+++
T Consensus       131 NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~  210 (305)
T cd05609         131 NLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFL  210 (305)
T ss_pred             HEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHH
Confidence            99999999999999986531                                 223333456778899999999999999


Q ss_pred             cccCCCC
Q 041845          129 MLPMAEN  135 (143)
Q Consensus       129 ~~~~~~~  135 (143)
                      ++..|+.
T Consensus       211 ~g~~pf~  217 (305)
T cd05609         211 VGCVPFF  217 (305)
T ss_pred             hCCCCCC
Confidence            9877765

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.94  E-value=4.2e-27  Score=157.36  Aligned_cols=127  Identities=27%  Similarity=0.297  Sum_probs=105.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||++++++.+..+...+++|||+++++|.+++..+. ..+++.+...++.|++.|+.|||+   .+++|+|++|
T Consensus        53 l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~---~~iiH~dlkp  128 (258)
T cd05078          53 MSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLED---KGLTHGNVCA  128 (258)
T ss_pred             HHhCCCCChhheeeEEEeCCCcEEEEecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCcc
Confidence            356899999999999999889999999999999999986443 367888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCc--------ccccccchhh--------------ccccccCC-CCCCCcccchhhhhhhhcccccc
Q 041845           81 TNILLDENWV--------AKHSRERQLR--------------LLGSRILP-AKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        81 ~nil~~~~~~--------~k~~~~~~~~--------------~~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +||+++.++.        +++.|||...              .+|+.... ..++.++|+||+|+++|+++++.
T Consensus       129 ~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~  202 (258)
T cd05078         129 KNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGG  202 (258)
T ss_pred             ceEEEecccccccCCCceEEecccccccccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCC
Confidence            9999987654        4788887643              12222222 34678899999999999999973

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.94  E-value=1.8e-27  Score=165.97  Aligned_cols=129  Identities=22%  Similarity=0.274  Sum_probs=106.7

Q ss_pred             CCCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      |+.++||||+++++++....      ..+++|||+++ ++.+.+.    ..++...+..++.|++.|+.|||+   .+++
T Consensus        74 l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~---~~iv  145 (359)
T cd07876          74 LKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIH----MELDHERMSYLLYQMLCGIKHLHS---AGII  145 (359)
T ss_pred             HHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCCc-CHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHh---CCcc
Confidence            35689999999999986543      46899999975 6766652    246778888999999999999998   8999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||||+|+||+++.++.++++|||.+.                 .+|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       146 HrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         146 HRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             cCCCCHHHEEECCCCCEEEecCCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999763                 2233344557788999999999999999998887643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.94  E-value=2.9e-27  Score=160.57  Aligned_cols=132  Identities=23%  Similarity=0.264  Sum_probs=113.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..+++|||+++++|.+.+...  ..++......++.|++.|+.+||+   .+++|+|++|
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~---~~i~H~dl~p  129 (290)
T cd05580          55 LQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHS---LDIVYRDLKP  129 (290)
T ss_pred             HHhCCCCCccceeeEEEcCCeEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCH
Confidence            35678999999999999999999999999999999998554  467888899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      .||+++.++.+++.|||.+..               +|+.......+.++|+||+|+++|+|+++..|+...
T Consensus       130 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  201 (290)
T cd05580         130 ENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDD  201 (290)
T ss_pred             HHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999986643               223333445678899999999999999988877543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.94  E-value=4.6e-27  Score=158.02  Aligned_cols=130  Identities=20%  Similarity=0.284  Sum_probs=105.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++.+.+....+++|||+++++|.+++.+..  ....+......++.|++.|+.|||+   .+++|+|++
T Consensus        50 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~~i~H~dik  126 (268)
T cd05086          50 RILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHK---HNFLHSDLA  126 (268)
T ss_pred             hccCCcchhheEEEecCCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH---CCeeccCCc
Confidence            46799999999999999999999999999999999986432  2345667788899999999999997   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc-------------------cccccC--------CCCCCCcccchhhhhhhhccccc-c
Q 041845           80 STNILLDENWVAKHSRERQLRL-------------------LGSRIL--------PAKLTEKSDVYSFGVLCARPAML-P  131 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~--------~~~~~~~~Di~s~G~~~~~~~~~-~  131 (143)
                      |+||+++.++.++++|||.+..                   .+++..        ...++.++|+||||+++|||+++ .
T Consensus       127 p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~  206 (268)
T cd05086         127 LRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAA  206 (268)
T ss_pred             cceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCC
Confidence            9999999999999999986531                   111111        12346789999999999999863 3


Q ss_pred             CCC
Q 041845          132 MAE  134 (143)
Q Consensus       132 ~~~  134 (143)
                      .|+
T Consensus       207 ~p~  209 (268)
T cd05086         207 QPY  209 (268)
T ss_pred             CCC
Confidence            344

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=3.4e-27  Score=157.52  Aligned_cols=132  Identities=28%  Similarity=0.439  Sum_probs=112.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++.+.+..+++|||+++++|.+++.......+++.....++.|++.|+.|+|+   .+++|+|++|
T Consensus        54 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p  130 (256)
T cd05039          54 MTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEE---KNFVHRDLAA  130 (256)
T ss_pred             HHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCccchhccc
Confidence            3568999999999999988899999999999999999966554568899999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .||+++.++..+++|||.+..               +|+......++.++|+||||+++|++++ +..|+.
T Consensus       131 ~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  201 (256)
T cd05039         131 RNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP  201 (256)
T ss_pred             ceEEEeCCCCEEEcccccccccccccccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999986542               2333344566778999999999999986 665554

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.94  E-value=4.9e-27  Score=158.82  Aligned_cols=131  Identities=23%  Similarity=0.290  Sum_probs=110.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|||++++++.+..++..++++||++++++...+.+. ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        57 ~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~~L~~LH~---~~i~H~dlkp~  132 (282)
T cd06643          57 ASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTEPQIRVVCKQTLEALNYLHE---NKIIHRDLKAG  132 (282)
T ss_pred             HHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCcc
Confidence            4679999999999999999999999999999998877432 3467889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------cccc-----CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRI-----LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~-----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                  |+..     ....++.++|+||+||++|+|+++..|+..
T Consensus       133 nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~  210 (282)
T cd06643         133 NILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHE  210 (282)
T ss_pred             cEEEccCCCEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccc
Confidence            999999999999999865321                  2221     123456789999999999999998777654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.94  E-value=2.3e-27  Score=165.46  Aligned_cols=132  Identities=20%  Similarity=0.199  Sum_probs=114.6

Q ss_pred             CCCCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |+++. |||||.+++.|+++...++|||++.+|.|.+.+...   .+++..+..++.|++.++.|||+   .+++|||+|
T Consensus        89 l~~l~~hpniv~l~~~~e~~~~~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~---~gvvHrDlK  162 (382)
T KOG0032|consen   89 LQQLSGHPNIVQLKDAFEDPDSVYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHS---LGVVHRDLK  162 (382)
T ss_pred             HHhccCCCCEEEEEEEEEcCCeEEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHh---CCceeccCC
Confidence            45676 999999999999999999999999999999999665   38899999999999999999998   999999999


Q ss_pred             CCcEEEcCC----Ccccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           80 STNILLDEN----WVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        80 ~~nil~~~~----~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      |+|+|+...    +.++++|||++...                 |+......|+..+|+||+|+++|.|+.+-.||..+.
T Consensus       163 pEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~  242 (382)
T KOG0032|consen  163 PENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGET  242 (382)
T ss_pred             HHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCC
Confidence            999999754    36899999987533                 222334688999999999999999999888877655

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.94  E-value=3.3e-27  Score=159.33  Aligned_cols=133  Identities=23%  Similarity=0.236  Sum_probs=114.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++.+...+..+++|||+++++|.+.+.+.....+++..+..++.|++.++.|+|+   .+++|+|++|
T Consensus        47 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p  123 (277)
T cd05577          47 LEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQ---RRIVYRDLKP  123 (277)
T ss_pred             HHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCH
Confidence            3568899999999999999999999999999999999865554568889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .||+++.++.++++|||.....                 |+......++.++|+||+|+++|+|+++..|+..
T Consensus       124 ~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  196 (277)
T cd05577         124 ENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQ  196 (277)
T ss_pred             HHEEECCCCCEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCC
Confidence            9999999999999999866422                 2223344567889999999999999998877754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.94  E-value=2.5e-27  Score=162.24  Aligned_cols=132  Identities=20%  Similarity=0.279  Sum_probs=109.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..+++|||+++ ++.+.+... ...+++..+..++.|++.|+.|||+   .+++|||++|
T Consensus        58 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~dlkp  132 (309)
T cd07872          58 LKDLKHANIVTLHDIVHTDKSLTLVFEYLDK-DLKQYMDDC-GNIMSMHNVKIFLYQILRGLAYCHR---RKVLHRDLKP  132 (309)
T ss_pred             HHhCCCCCcceEEEEEeeCCeEEEEEeCCCC-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            3568999999999999999999999999975 888877543 3356788889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+...                  |+... ...++.++|+||+||++|+|+++..|+...
T Consensus       133 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~  208 (309)
T cd07872         133 QNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGS  208 (309)
T ss_pred             HHEEECCCCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999976421                  11121 234678899999999999999988777543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.94  E-value=5.2e-27  Score=158.88  Aligned_cols=127  Identities=24%  Similarity=0.391  Sum_probs=106.6

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++|||++++.+++...  ...+++|||+++++|.+++.+.. ..+++.....++.|++.|+.|+|+   ++++|+|+
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~---~gi~H~dl  135 (284)
T cd05079          60 LRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGS---RQYVHRDL  135 (284)
T ss_pred             HHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccc
Confidence            3578999999999998764  56889999999999999985432 357889999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +|.||+++.++.+++.|||.+..                     +|+......++.++|+||||+++|+++++.
T Consensus       136 kp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~  209 (284)
T cd05079         136 AARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYC  209 (284)
T ss_pred             chheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCC
Confidence            99999999999999999986542                     122233345678899999999999999853

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.94  E-value=2.6e-27  Score=162.02  Aligned_cols=130  Identities=25%  Similarity=0.380  Sum_probs=108.7

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC--------------CCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK--------------PPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      .+ +|+||+++++++...+..++++||+++++|.+++.....              ..+++.....++.|++.|+.|||+
T Consensus        79 ~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~  158 (307)
T cd05098          79 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS  158 (307)
T ss_pred             HhcCCCCEeeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            45 799999999999999999999999999999999865321              246788899999999999999997


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~  127 (143)
                         .+++|+|++|+||+++.++.++++|||.+...                    |+......++.++|+||+||++|+|
T Consensus       159 ---~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el  235 (307)
T cd05098         159 ---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI  235 (307)
T ss_pred             ---CCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHH
Confidence               89999999999999999999999999865321                    2222334567889999999999999


Q ss_pred             cc-ccCCCC
Q 041845          128 AM-LPMAEN  135 (143)
Q Consensus       128 ~~-~~~~~~  135 (143)
                      ++ +..|+.
T Consensus       236 ~~~g~~p~~  244 (307)
T cd05098         236 FTLGGSPYP  244 (307)
T ss_pred             HcCCCCCCC
Confidence            97 555554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.94  E-value=4.1e-27  Score=160.30  Aligned_cols=132  Identities=23%  Similarity=0.355  Sum_probs=109.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC---------CCCcHHHHHHHHHHHHHHHhHhhcCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK---------PPLQWMWRLKICIGAARGLHYLHTGTRN   71 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~i~~~l~~lh~~~~~   71 (143)
                      |+.++|+||+++++++..++..+++|||+++++|.+++.....         ..+++.+...++.|++.|+.|||+   .
T Consensus        73 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~---~  149 (296)
T cd05095          73 MSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---L  149 (296)
T ss_pred             HHhCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHH---C
Confidence            3568999999999999999999999999999999998864321         235667889999999999999998   8


Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc--
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM--  129 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~--  129 (143)
                      +++|+|++|+||+++.++.+++.|||.+...                    ++......++.++|+|||||++|||++  
T Consensus       150 ~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~  229 (296)
T cd05095         150 NFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLC  229 (296)
T ss_pred             CeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhC
Confidence            9999999999999999999999999976421                    111233456789999999999999987  


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..|+.
T Consensus       230 ~~~p~~  235 (296)
T cd05095         230 KEQPYS  235 (296)
T ss_pred             CCCCcc
Confidence            445554

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.94  E-value=4.1e-27  Score=160.79  Aligned_cols=131  Identities=24%  Similarity=0.378  Sum_probs=108.4

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      +.+ +||||+++++.+......+++|||+++++|.+++.+..              ...+++.....++.|++.|+.|||
T Consensus        75 ~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH  154 (304)
T cd05101          75 KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA  154 (304)
T ss_pred             HhhccCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            356 79999999999999999999999999999999986532              134667788899999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~  126 (143)
                      +   .+++|+|++|+||+++.++.++++|||.+...                    |+......++.++|+||||+++|+
T Consensus       155 ~---~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~e  231 (304)
T cd05101         155 S---QKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE  231 (304)
T ss_pred             H---CCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHH
Confidence            8   89999999999999999999999999865421                    222334457789999999999999


Q ss_pred             ccc-ccCCCC
Q 041845          127 PAM-LPMAEN  135 (143)
Q Consensus       127 ~~~-~~~~~~  135 (143)
                      +++ +..|+.
T Consensus       232 l~~~g~~p~~  241 (304)
T cd05101         232 IFTLGGSPYP  241 (304)
T ss_pred             HHcCCCCCcc
Confidence            987 555543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5.4e-27  Score=156.78  Aligned_cols=132  Identities=25%  Similarity=0.354  Sum_probs=112.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+++++.+.+....+++|||+++++|.+++... ...++...+..++.|++.++.|||+   .+++|+|++|
T Consensus        54 l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p  129 (262)
T cd06613          54 LKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVT-RGPLSELQIAYVCRETLKGLAYLHE---TGKIHRDIKG  129 (262)
T ss_pred             HHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHh---CCceecCCCh
Confidence            35789999999999999999999999999999999988543 2467888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCC---CCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPA---KLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~---~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+++.|||.+..                  +|+.....   .++.++|+||+|+++|+|+++..|+..
T Consensus       130 ~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~  206 (262)
T cd06613         130 ANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFD  206 (262)
T ss_pred             hhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999986432                  12223333   567789999999999999998877654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1e-27  Score=173.19  Aligned_cols=132  Identities=27%  Similarity=0.314  Sum_probs=113.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCC--cHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPL--QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      ++++|.|||+++|++-+++++-|+||-.+||+|.+.+++..+ ++  .+.++-.+..||+.++.|||+   +.|+|||+|
T Consensus       627 ~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSsLLrskWG-PlKDNEstm~fYtkQILeGLkYLHe---n~IVHRDIK  702 (1226)
T KOG4279|consen  627 STLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSSLLRSKWG-PLKDNESTMNFYTKQILEGLKYLHE---NKIVHRDIK  702 (1226)
T ss_pred             HHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHHHHHhccC-CCccchhHHHHHHHHHHHHhhhhhh---cceeecccc
Confidence            468999999999999999999999999999999999976643 34  688899999999999999998   999999999


Q ss_pred             CCcEEEc-CCCcccccccchhh------------------ccccccCC--CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           80 STNILLD-ENWVAKHSRERQLR------------------LLGSRILP--AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        80 ~~nil~~-~~~~~k~~~~~~~~------------------~~~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      -.|+|+. -.|..|++|||...                  ++|+.+.+  ..|.+++|||||||++-||+||..||.+-
T Consensus       703 GDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~El  781 (1226)
T KOG4279|consen  703 GDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVEL  781 (1226)
T ss_pred             CCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeec
Confidence            9999997 56889999999753                  22333332  35789999999999999999999888653

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.94  E-value=3.8e-27  Score=158.08  Aligned_cols=131  Identities=24%  Similarity=0.355  Sum_probs=111.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+....++++||+++++|.+++.+.  ..++...+..++.|++.|+.++|+   .+++|+|++|
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH~---~~ivH~di~p  134 (267)
T cd06628          60 LKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLHN---RGIIHRDIKG  134 (267)
T ss_pred             HHhcCCCCeeeEEEEEEeCCccEEEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHh---cCcccccCCH
Confidence            35689999999999999999999999999999999999543  367788889999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||++++++.++++|||.+...                        |+......++.++|+||+|+++|+++++..|+..
T Consensus       135 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  214 (267)
T cd06628         135 ANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPD  214 (267)
T ss_pred             HHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCC
Confidence            9999999999999999854322                        2222334567789999999999999998877764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.94  E-value=5.9e-27  Score=156.27  Aligned_cols=133  Identities=23%  Similarity=0.270  Sum_probs=113.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++++||||+++.+++.+.+..++++||+++++|.+.+.......+++.+...++.|++.++.++|+   .+++|+|++|
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~l~~  129 (256)
T cd08218          53 LSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHD---RKILHRDIKS  129 (256)
T ss_pred             HHhCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCH
Confidence            4678999999999999999999999999999999998865444567888899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+++.|||.+..                  +|+.......+.++|+||||+++++++++..|+..
T Consensus       130 ~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~  203 (256)
T cd08218         130 QNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEA  203 (256)
T ss_pred             HHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccC
Confidence            999999999999999986532                  12223345667889999999999999998777653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.94  E-value=4.4e-27  Score=160.30  Aligned_cols=130  Identities=21%  Similarity=0.322  Sum_probs=112.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|||++++++.+...+..++++||+++++|...+...   .+++..+..++.+++.++.+||+   .+++|+|++|+
T Consensus        71 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~---~~i~H~dL~p~  144 (296)
T cd06655          71 KELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHA---NQVIHRDIKSD  144 (296)
T ss_pred             HhcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHH
Confidence            5689999999999999999999999999999999988532   57889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+..                  +|+......++.++|+|||||++|+++++..|+...
T Consensus       145 Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~  218 (296)
T cd06655         145 NVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (296)
T ss_pred             HEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999986432                  223333455778899999999999999988877643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.94  E-value=5.3e-27  Score=157.42  Aligned_cols=129  Identities=21%  Similarity=0.290  Sum_probs=109.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+..++..++++||+++++|.+++...  ..+++.+...++.|++.++.|||+   .+++|+|++|+
T Consensus        61 ~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~  135 (267)
T cd06645          61 KDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVT--GPLSESQIAYVSRETLQGLYYLHS---KGKMHRDIKGA  135 (267)
T ss_pred             HhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHH
Confidence            4679999999999999999999999999999999988543  367889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-----------------c-ccccC---CCCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRL-----------------L-GSRIL---PAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-----------------~-~~~~~---~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+++.++.++++|||.+..                 . |+...   ...++.++|+||+||++|+|+++..|+.
T Consensus       136 nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~  210 (267)
T cd06645         136 NILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMF  210 (267)
T ss_pred             HEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcc
Confidence            99999999999999987532                 1 22111   3346778999999999999999776653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.94  E-value=4.7e-27  Score=158.62  Aligned_cols=129  Identities=21%  Similarity=0.292  Sum_probs=111.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.+++..+++|||+++++|.+.+..   ..+++.....++.|++.++.++|+   .+++|+|++|+
T Consensus        57 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~---~~ivH~dl~p~  130 (277)
T cd06640          57 SQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHS---EKKIHRDIKAA  130 (277)
T ss_pred             HhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCccCcCCChh
Confidence            567999999999999999999999999999999998853   257788889999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+..                  +|+......++.++|+||||+++|+|+++..|+..
T Consensus       131 Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  203 (277)
T cd06640         131 NVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSD  203 (277)
T ss_pred             hEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCC
Confidence            99999999999999986632                  22223344567889999999999999999888764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-27  Score=171.18  Aligned_cols=133  Identities=26%  Similarity=0.262  Sum_probs=108.9

Q ss_pred             CCCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCC-CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            1 LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      |++++|+|||+++++-.+..      ...++||||.+|||...+.+-. ...+++.....++.++..|+.|||+   ++|
T Consensus        65 lkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrE---n~I  141 (732)
T KOG4250|consen   65 LKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRE---NGI  141 (732)
T ss_pred             HHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHH---cCc
Confidence            57899999999999766543      4678999999999999995322 2567899999999999999999997   999


Q ss_pred             eecCCCCCcEEEcCC----Ccccccccchhhcc----------------ccccC--CCCCCCcccchhhhhhhhcccccc
Q 041845           74 IHRDVKSTNILLDEN----WVAKHSRERQLRLL----------------GSRIL--PAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        74 ~h~~l~~~nil~~~~----~~~k~~~~~~~~~~----------------~~~~~--~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +||||||.||++..+    -..|++|||.++-.                .+.+.  +..|+..+|.|||||++|+.+||.
T Consensus       142 vHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~  221 (732)
T KOG4250|consen  142 VHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGE  221 (732)
T ss_pred             eeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccC
Confidence            999999999998644    35689999987522                11122  367888899999999999999998


Q ss_pred             CCCCc
Q 041845          132 MAENE  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      +||-.
T Consensus       222 lPF~p  226 (732)
T KOG4250|consen  222 LPFIP  226 (732)
T ss_pred             CCCCc
Confidence            88864

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.94  E-value=1.9e-27  Score=157.15  Aligned_cols=127  Identities=23%  Similarity=0.279  Sum_probs=109.6

Q ss_pred             CCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            5 RHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         5 ~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      .|||||+++++++.    ...+.+|||.+++|.|.+.+.++....+++..+..++.||..|+.|||+   .+|.|||+||
T Consensus       113 ~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~---~nIAHRDlKp  189 (400)
T KOG0604|consen  113 GHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHS---MNIAHRDLKP  189 (400)
T ss_pred             CCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---cchhhccCCh
Confidence            59999999999874    3467899999999999999988888899999999999999999999998   8999999999


Q ss_pred             CcEEEcCC---Ccccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           81 TNILLDEN---WVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        81 ~nil~~~~---~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +|+|+..+   ...|++|||++.                 .+|+.+..++|+...|+||+||++|-|+.|..||
T Consensus       190 ENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPF  263 (400)
T KOG0604|consen  190 ENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF  263 (400)
T ss_pred             hheeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcc
Confidence            99999754   567999999874                 2234455678899999999999999988765554

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5.4e-27  Score=158.40  Aligned_cols=133  Identities=21%  Similarity=0.263  Sum_probs=111.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++.+.++...+++|||+++++|.+++.+. ...+++..+..++.|++.++.|||+   .+++|+|++|
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p  131 (280)
T cd06611          56 LSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLEL-ERGLTEPQIRYVCRQMLEALNFLHS---HKVIHRDLKA  131 (280)
T ss_pred             HHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCh
Confidence            35789999999999999999999999999999999988543 3468889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------ccccc-----CCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRI-----LPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~-----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++..++.|||....                  .|+..     ....++.++|+||+|+++|+|+++..|+...
T Consensus       132 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~  211 (280)
T cd06611         132 GNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHEL  211 (280)
T ss_pred             hhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccC
Confidence            999999999999999986432                  11111     1234567899999999999999988777543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.94  E-value=3.2e-27  Score=177.52  Aligned_cols=132  Identities=20%  Similarity=0.216  Sum_probs=109.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC---------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH---------KPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+.+....         ....++..+..++.|++.|+.|+|+   .+
T Consensus        57 s~L~HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs---~G  133 (932)
T PRK13184         57 ADLIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHS---KG  133 (932)
T ss_pred             HhCCCcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHH---CC
Confidence            56889999999999999999999999999999999875311         1234456778899999999999998   89


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhcc------------------------------------ccccCCCCCCCccc
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRLL------------------------------------GSRILPAKLTEKSD  116 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~~------------------------------------~~~~~~~~~~~~~D  116 (143)
                      ++|||+||+||+++.++.+++.|||.+...                                    |+...+..++.++|
T Consensus       134 IIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSD  213 (932)
T PRK13184        134 VLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTD  213 (932)
T ss_pred             ccccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhH
Confidence            999999999999999999999999876432                                    22233445678899


Q ss_pred             chhhhhhhhccccccCCCCc
Q 041845          117 VYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       117 i~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+||++|||+++..|+..
T Consensus       214 IWSLGVILyELLTG~~PF~~  233 (932)
T PRK13184        214 IYALGVILYQMLTLSFPYRR  233 (932)
T ss_pred             HHHHHHHHHHHHHCCCCCCC
Confidence            99999999999998888754

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=6.4e-27  Score=156.49  Aligned_cols=133  Identities=30%  Similarity=0.406  Sum_probs=113.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++.+....++++|++++++|.+++.+.....+++.....++.+++.|+.|+|+   ++++|+|++|
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~---~~i~h~di~p  131 (261)
T cd05034          55 MKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLES---RNYIHRDLAA  131 (261)
T ss_pred             HhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcch
Confidence            3578999999999999888899999999999999999976555578889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .||+++.++.++++|||.+..                   +|+......++.++|+||+|+++|++++ +..|+..
T Consensus       132 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~  207 (261)
T cd05034         132 RNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPG  207 (261)
T ss_pred             heEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999986532                   2233334567789999999999999998 6666643

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.94  E-value=5e-27  Score=157.39  Aligned_cols=131  Identities=24%  Similarity=0.315  Sum_probs=112.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++.+++.+.+..++++||+++++|.+++.+.  ..+++.....++.|++.++.|+|+   .+++|+|++|
T Consensus        56 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p  130 (265)
T cd06631          56 LKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRF--GPLPEPVFCKYTKQILDGVAYLHN---NCVVHRDIKG  130 (265)
T ss_pred             HHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCH
Confidence            35689999999999999999999999999999999998543  357788888999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .||++++++.++++|||.....                        |+......++.++|+||+|+++|+++++..|+..
T Consensus       131 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~  210 (265)
T cd06631         131 NNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLAS  210 (265)
T ss_pred             HhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCcccc
Confidence            9999999999999999865421                        2223334567889999999999999998887754

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=3.3e-27  Score=168.92  Aligned_cols=126  Identities=21%  Similarity=0.216  Sum_probs=106.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++..+...++++|++. ++|..++... ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus       214 L~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDLKP  288 (461)
T PHA03211        214 LRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYTYLGAR-LRPLGLAQVTAVARQLLSAIDYIHG---EGIIHRDIKT  288 (461)
T ss_pred             HHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECcCCH
Confidence            457899999999999999999999999995 6888887543 2368899999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +||+++.++.++++|||.+...                    ++.+....++.++|+|||||++|||+++.
T Consensus       289 ~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~  359 (461)
T PHA03211        289 ENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHT  359 (461)
T ss_pred             HHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcC
Confidence            9999999999999999976421                    22233456788999999999999998743

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.94  E-value=9.6e-27  Score=156.41  Aligned_cols=133  Identities=24%  Similarity=0.314  Sum_probs=108.2

Q ss_pred             CCCCCCCCcceeeEEeecCCc------hhhhHhhhcCCCHHHHhhcC----CCCCCcHHHHHHHHHHHHHHHhHhhcCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKE------MILVYDCMARGTLRDHLYNN----HKPPLQWMWRLKICIGAARGLHYLHTGTR   70 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~------~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lh~~~~   70 (143)
                      |+.++|+||+++++.+.+...      .++++||+++++|...+...    ....+++.....++.|++.|+.|+|+   
T Consensus        55 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~---  131 (273)
T cd05035          55 MKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSN---  131 (273)
T ss_pred             HHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHh---
Confidence            356889999999998865443      78999999999999887432    22467888899999999999999997   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                      .+++|+|++|+||++++++.++++|||.+...                    ++......++.++|+|||||++|||++ 
T Consensus       132 ~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~  211 (273)
T cd05035         132 RNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATR  211 (273)
T ss_pred             CCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhC
Confidence            89999999999999999999999999976432                    112233456788999999999999998 


Q ss_pred             ccCCCCc
Q 041845          130 LPMAENE  136 (143)
Q Consensus       130 ~~~~~~~  136 (143)
                      +..|+..
T Consensus       212 g~~p~~~  218 (273)
T cd05035         212 GQTPYPG  218 (273)
T ss_pred             CCCCCCC
Confidence            6666543

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.94  E-value=4.7e-27  Score=161.30  Aligned_cols=132  Identities=23%  Similarity=0.319  Sum_probs=104.4

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcC-------CCCCCcHHHHHHHHHHHHHHHhHhhcCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNN-------HKPPLQWMWRLKICIGAARGLHYLHTGTRN   71 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~   71 (143)
                      |+.++||||+++++++..  +...++++||+.+ ++.+.+...       ....++...+..++.|++.|+.|||+   .
T Consensus        52 l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~  127 (317)
T cd07868          52 LRELKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---N  127 (317)
T ss_pred             HHhcCCCCCcceeeeEecCCCcEEEEEEeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            356899999999999864  4568899999864 887776422       12357788899999999999999998   8


Q ss_pred             CeeecCCCCCcEEE----cCCCcccccccchhhcc---------------------ccccCC-CCCCCcccchhhhhhhh
Q 041845           72 TIIHRDVKSTNILL----DENWVAKHSRERQLRLL---------------------GSRILP-AKLTEKSDVYSFGVLCA  125 (143)
Q Consensus        72 ~i~h~~l~~~nil~----~~~~~~k~~~~~~~~~~---------------------~~~~~~-~~~~~~~Di~s~G~~~~  125 (143)
                      +++||||||+||++    +..+.+|++|||.+...                     |+.+.. ..++.++|+||+||++|
T Consensus       128 ~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  207 (317)
T cd07868         128 WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFA  207 (317)
T ss_pred             CEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHH
Confidence            99999999999999    45578999999976421                     222222 34678899999999999


Q ss_pred             ccccccCCCCc
Q 041845          126 RPAMLPMAENE  136 (143)
Q Consensus       126 ~~~~~~~~~~~  136 (143)
                      +|+++..++..
T Consensus       208 el~~g~~~f~~  218 (317)
T cd07868         208 ELLTSEPIFHC  218 (317)
T ss_pred             HHHhCCCCccC
Confidence            99998777653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.94  E-value=6.1e-27  Score=158.23  Aligned_cols=127  Identities=21%  Similarity=0.268  Sum_probs=108.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++.+..++..++++||++++++....      .+++.....++.|++.|+.|+|+   .+++|+|++|
T Consensus        53 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp  123 (279)
T cd06619          53 LYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWS---LKILHRDVKP  123 (279)
T ss_pred             HHhCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCCH
Confidence            35689999999999999999999999999999886543      45678888999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLR----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .||+++.++.++++|||.+.                .+|+......++.++|+||+|+++|+|+++..|+..
T Consensus       124 ~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~  195 (279)
T cd06619         124 SNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQ  195 (279)
T ss_pred             HHEEECCCCCEEEeeCCcceecccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchh
Confidence            99999999999999998653                123334455678899999999999999998877653

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.94  E-value=3.1e-27  Score=165.51  Aligned_cols=131  Identities=24%  Similarity=0.315  Sum_probs=108.3

Q ss_pred             CCCCCCCCcceeeEEeecCC-----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVENK-----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~-----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |+.++|+||+++++++..++     ..++++||+. ++|...+...  ..++...+..++.|++.|+.|||+   .+++|
T Consensus        53 l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~---~~ivH  126 (372)
T cd07853          53 LCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SDLHKIIVSP--QPLSSDHVKVFLYQILRGLKYLHS---AGILH  126 (372)
T ss_pred             HHhCCCCCcCCHhheecCCCccccceEEEEeeccc-cCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeC
Confidence            35689999999999998766     7899999996 5888877433  467889999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc-------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL-------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+|+||+++.++.++++|||.+...                   |+.+.. ..++.++|+||+||++|||+++..|+.
T Consensus       127 ~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  206 (372)
T cd07853         127 RDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQ  206 (372)
T ss_pred             CCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCC
Confidence            999999999999999999999976421                   111222 246788999999999999999887775


Q ss_pred             cc
Q 041845          136 EQ  137 (143)
Q Consensus       136 ~~  137 (143)
                      ..
T Consensus       207 ~~  208 (372)
T cd07853         207 AQ  208 (372)
T ss_pred             CC
Confidence            43

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.94  E-value=7.7e-27  Score=156.49  Aligned_cols=130  Identities=29%  Similarity=0.400  Sum_probs=108.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++.+. ....+++|||+++++|.+++.+.....+++.....++.|++.|+.++|+   .+++|+|++|.
T Consensus        56 ~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p~  131 (262)
T cd05071          56 KKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAA  131 (262)
T ss_pred             HhCCCCCcceEEEEEC-CCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHH---CCccccccCcc
Confidence            5678999999999874 4567899999999999999965444567888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      ||+++.++.++++|||.+..                   +|+......++.++|+||||+++|++++ +..|+.
T Consensus       132 Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~  205 (262)
T cd05071         132 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  205 (262)
T ss_pred             cEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999986542                   1222233456788999999999999998 665554

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.94  E-value=5.3e-27  Score=159.17  Aligned_cols=132  Identities=22%  Similarity=0.364  Sum_probs=108.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------KPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      ++.++||||+++++++.+++..+++|||+++|+|.+++....        ........+..++.|++.|+.|||+   ++
T Consensus        63 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~  139 (288)
T cd05061          63 MKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA---KK  139 (288)
T ss_pred             HHhCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            356799999999999998899999999999999999985422        1233456778899999999999997   89


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-cc
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LP  131 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~  131 (143)
                      ++|+|++|+||+++.++.++++|||.++.                    +|+......++.++|+|||||++|||++ +.
T Consensus       140 i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~  219 (288)
T cd05061         140 FVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAE  219 (288)
T ss_pred             CcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999986541                    2222334567889999999999999987 45


Q ss_pred             CCCC
Q 041845          132 MAEN  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      .|+.
T Consensus       220 ~p~~  223 (288)
T cd05061         220 QPYQ  223 (288)
T ss_pred             CCCC
Confidence            5553

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.94  E-value=1.1e-26  Score=157.91  Aligned_cols=131  Identities=21%  Similarity=0.272  Sum_probs=110.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+..++..+++|||++++++...+.+. ...+++..+..++.|++.++.+||+   .+++|+|++|+
T Consensus        64 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~  139 (292)
T cd06644          64 ATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLEL-DRGLTEPQIQVICRQMLEALQYLHS---MKIIHRDLKAG  139 (292)
T ss_pred             HhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHhc---CCeeecCCCcc
Confidence            5689999999999999999999999999999998877443 2467889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccC-----CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRIL-----PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+++.|||.+..                  +|+.+.     ...++.++|+|||||++|+|+++..|+..
T Consensus       140 Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  217 (292)
T cd06644         140 NVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHE  217 (292)
T ss_pred             eEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcc
Confidence            99999999999999986532                  122221     23356789999999999999998877654

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.94  E-value=4.4e-27  Score=163.83  Aligned_cols=128  Identities=22%  Similarity=0.273  Sum_probs=105.5

Q ss_pred             CCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++....      ..+++|||+++ ++.+.+..    .++...+..++.|++.|+.|||+   .+++|
T Consensus        71 ~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~---~givH  142 (355)
T cd07874          71 KCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS---AGIIH  142 (355)
T ss_pred             HHhCCCchhceeeeeeccccccccceeEEEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHh---CCccc
Confidence            4679999999999986432      46899999975 77766632    46778888999999999999997   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+||+||+++.++.++++|||.+...                 |+......++.++|+||+||++|+|+++..|+...
T Consensus       143 rDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  221 (355)
T cd07874         143 RDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_pred             CCCChHHEEECCCCCEEEeeCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999976432                 22234456788999999999999999988777643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.94  E-value=9.5e-27  Score=155.77  Aligned_cols=132  Identities=29%  Similarity=0.410  Sum_probs=109.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++++++. .+..+++|||+++++|.+++.+.....+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        55 l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~dl~~  130 (260)
T cd05069          55 MKKLRHDKLVPLYAVVS-EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRA  130 (260)
T ss_pred             HHhCCCCCeeeEEEEEc-CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCEeecccCc
Confidence            35789999999999874 4568899999999999999965544557888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .||++++++.++++|||.+...                   |+......++.++|+||||+++|++++ +..|+..
T Consensus       131 ~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  206 (260)
T cd05069         131 ANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG  206 (260)
T ss_pred             ceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999976432                   111223456778999999999999998 6666653

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.94  E-value=1e-26  Score=155.08  Aligned_cols=132  Identities=29%  Similarity=0.447  Sum_probs=110.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||++++++++... ..+++|||+++++|.+++.......+++.....++.|++.|+.|+|+   .+++|+|++|
T Consensus        53 l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~~~H~dl~p  128 (254)
T cd05083          53 MTKLHHKNLVRLLGVILHN-GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLES---KKLVHRDLAA  128 (254)
T ss_pred             HHhCCCCCcCeEEEEEcCC-CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCc
Confidence            3568999999999988654 57899999999999999966555567888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .||+++.++.++++|||.+..               +|+......++.++|+||+|+++|+|++ +..|+..
T Consensus       129 ~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~  200 (254)
T cd05083         129 RNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPK  200 (254)
T ss_pred             ceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            999999999999999986542               2222334567788999999999999987 6666543

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=1e-26  Score=157.03  Aligned_cols=131  Identities=27%  Similarity=0.408  Sum_probs=110.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++.+ ...++++||+++++|.+.+.+. ...+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        63 l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~di~p  137 (279)
T cd05057          63 MASVDHPHVVRLLGICLS-SQVQLITQLMPLGCLLDYVRNH-KDNIGSQYLLNWCVQIAKGMSYLEE---KRLVHRDLAA  137 (279)
T ss_pred             HHhCCCCCcceEEEEEec-CceEEEEecCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecccCc
Confidence            356899999999999887 7889999999999999998654 3357889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.+++.|||.+...                    |+......++.++|+||||+++||+++ +..|+..
T Consensus       138 ~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~  214 (279)
T cd05057         138 RNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEG  214 (279)
T ss_pred             ceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999865421                    222334566788999999999999997 7666653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=7.7e-27  Score=158.86  Aligned_cols=132  Identities=25%  Similarity=0.385  Sum_probs=108.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC----------CCCCcHHHHHHHHHHHHHHHhHhhcCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH----------KPPLQWMWRLKICIGAARGLHYLHTGTR   70 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~i~~~l~~lh~~~~   70 (143)
                      |+.++|+|++++++++...+..+++|||+++++|.+++....          ...+++.....++.|++.|+.|||+   
T Consensus        71 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~---  147 (295)
T cd05097          71 MSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLAS---  147 (295)
T ss_pred             HHhCCCCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHh---
Confidence            357899999999999999999999999999999999885321          1235678889999999999999998   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                      .+++|+|++|.||+++.++.++++|||.+...                    |+......++.++|+|||||++|+|++ 
T Consensus       148 ~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~  227 (295)
T cd05097         148 LNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTL  227 (295)
T ss_pred             cCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHc
Confidence            89999999999999999999999999876421                    222233456889999999999999987 


Q ss_pred             -ccCCCC
Q 041845          130 -LPMAEN  135 (143)
Q Consensus       130 -~~~~~~  135 (143)
                       +..|+.
T Consensus       228 ~~~~p~~  234 (295)
T cd05097         228 CKEQPYS  234 (295)
T ss_pred             CCCCCCc
Confidence             444443

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.94  E-value=4.4e-27  Score=167.90  Aligned_cols=133  Identities=21%  Similarity=0.251  Sum_probs=105.1

Q ss_pred             CCCCCCCCcceeeEEeecC--------CchhhhHhhhcCCCHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHhHhhcCCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--------KEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLHYLHTGTR   70 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--------~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~   70 (143)
                      |+.++||||+++++++...        ..++++|||+++ ++.+.+..  .....+++..+..++.|++.|+.|||+   
T Consensus       113 l~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~---  188 (440)
T PTZ00036        113 MKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHS---  188 (440)
T ss_pred             HHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence            4578999999998876432        246789999975 77766532  234567888999999999999999998   


Q ss_pred             CCeeecCCCCCcEEEcCCC-cccccccchhhc-----------------cccccCC-CCCCCcccchhhhhhhhcccccc
Q 041845           71 NTIIHRDVKSTNILLDENW-VAKHSRERQLRL-----------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~-~~k~~~~~~~~~-----------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      .+++||||||+||+++.++ .+|++|||.+..                 +|+.+.. ..++.++|+||+||++|||+++.
T Consensus       189 ~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~  268 (440)
T PTZ00036        189 KFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGY  268 (440)
T ss_pred             CCEecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            8999999999999998654 699999997742                 2222222 35788999999999999999988


Q ss_pred             CCCCcc
Q 041845          132 MAENEQ  137 (143)
Q Consensus       132 ~~~~~~  137 (143)
                      .|+...
T Consensus       269 ~pf~~~  274 (440)
T PTZ00036        269 PIFSGQ  274 (440)
T ss_pred             CCCCCC
Confidence            777643

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.94  E-value=5.5e-27  Score=159.99  Aligned_cols=131  Identities=21%  Similarity=0.282  Sum_probs=109.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..++++||++ ++|.+.+... ...+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        58 l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~lH~---~~i~H~dlkp  132 (301)
T cd07873          58 LKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDC-GNSINMHNVKLFLFQLLRGLNYCHR---RKVLHRDLKP  132 (301)
T ss_pred             HHhcCCCCcceEEEEEecCCeEEEEEeccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCH
Confidence            357899999999999999999999999997 5898887543 3467788899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccC-CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                  |+... ...++.++|+||+||++|+|+++..|+..
T Consensus       133 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~  207 (301)
T cd07873         133 QNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPG  207 (301)
T ss_pred             HHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999876421                  11111 12356789999999999999998777654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.94  E-value=5.7e-27  Score=158.50  Aligned_cols=132  Identities=20%  Similarity=0.291  Sum_probs=109.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |++++|||++++++++.+++..+++|||++ +++.+.+.... ...+++..+..++.|++.|+.|||+   .+++|+|++
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dl~  128 (285)
T cd07861          53 LKELQHPNIVCLQDVLMQESRLYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHS---RRVLHRDLK  128 (285)
T ss_pred             HHhcCCCCEeeeEEEEeeCCeEEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCC
Confidence            356789999999999999999999999997 58888775433 2567889999999999999999997   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||+++.++.++++|||.+...                  |+.... ..++.++|+||+||++|+++++..++..
T Consensus       129 p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~  204 (285)
T cd07861         129 PQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHG  204 (285)
T ss_pred             HHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            99999999999999999865321                  222222 2357789999999999999998766653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.94  E-value=6.2e-27  Score=156.99  Aligned_cols=131  Identities=25%  Similarity=0.292  Sum_probs=109.1

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++++.++  ..+++++||+++++|.+++.+.  ..+++.....++.|++.++.+||+   .+++|+|+
T Consensus        58 l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~---~~i~H~dl  132 (265)
T cd06652          58 LKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLHS---NMIVHRDI  132 (265)
T ss_pred             HHhcCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCC
Confidence            3567899999999988764  4678999999999999988543  356778888999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++.+++.|||....                     +|+......++.++|+||||+++|+++++..|+..
T Consensus       133 ~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  211 (265)
T cd06652         133 KGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAE  211 (265)
T ss_pred             CHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCc
Confidence            99999999999999999986531                     22223344567889999999999999998877654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=3.5e-27  Score=167.82  Aligned_cols=126  Identities=33%  Similarity=0.444  Sum_probs=108.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||++.+.|||......|+|||||- |+..+.+-. ...++.+..+..++.+.+.|+.|||+   .+.+|||+|.
T Consensus        80 L~~l~HPntieYkgCyLre~TaWLVMEYCl-GSAsDlleV-hkKplqEvEIAAi~~gaL~gLaYLHS---~~~IHRDiKA  154 (948)
T KOG0577|consen   80 LRQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHS---HNRIHRDIKA  154 (948)
T ss_pred             HHhccCCCcccccceeeccchHHHHHHHHh-ccHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHH---hhHHhhhccc
Confidence            467899999999999999999999999996 488888743 34578888889999999999999998   8899999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc-----------------cCCCCCCCcccchhhhhhhhcccccc
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR-----------------ILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~-----------------~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      .|||+++.|.+|+.|||.+.++.+.                 +..+.|+-++||||+|+++.|++-..
T Consensus       155 GNILLse~g~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERk  222 (948)
T KOG0577|consen  155 GNILLSEPGLVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK  222 (948)
T ss_pred             cceEecCCCeeeeccccchhhcCchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcC
Confidence            9999999999999999987543221                 34568999999999999999987643

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.94  E-value=6.9e-27  Score=161.95  Aligned_cols=131  Identities=27%  Similarity=0.356  Sum_probs=107.8

Q ss_pred             CCC-CCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcCCC------------------------------------
Q 041845            2 SNL-RHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNNHK------------------------------------   43 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~------------------------------------   43 (143)
                      +.+ +|+||++++++|.. +..+++++||+++++|.+.+.....                                    
T Consensus        65 ~~l~~h~niv~~~~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (337)
T cd05054          65 IHIGHHLNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSAS  144 (337)
T ss_pred             HhhccCcchhheeeeEecCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccc
Confidence            345 79999999998864 4568899999999999998853221                                    


Q ss_pred             -----------------------CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           44 -----------------------PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        44 -----------------------~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                                             ..+++..+..++.|++.|+.|||+   .+++|||+||+||+++.++.++++|||.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~---~~ivHrDikp~Nill~~~~~vkL~DfG~a~  221 (337)
T cd05054         145 SGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLAS---RKCIHRDLAARNILLSENNVVKICDFGLAR  221 (337)
T ss_pred             cccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCcceEEEeCCCcEEEeccccch
Confidence                                   256788889999999999999997   899999999999999999999999999764


Q ss_pred             c--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845          101 L--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus       101 ~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .                    +|+......++.++|+||+||++|||++ +..|+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~  277 (337)
T cd05054         222 DIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYP  277 (337)
T ss_pred             hcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCC
Confidence            2                    2333445567889999999999999987 666654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.94  E-value=8.2e-27  Score=157.10  Aligned_cols=132  Identities=25%  Similarity=0.377  Sum_probs=110.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-------CCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-------PPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      |++++|+||+++++.+.+.+..+++|||+++++|.+++.....       ..+++..+..++.|++.++.|||+   .++
T Consensus        62 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~---~~i  138 (275)
T cd05046          62 FRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSN---ARF  138 (275)
T ss_pred             HHhcCCcceeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhh---cCc
Confidence            3578999999999999988999999999999999999854431       257889999999999999999998   899


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhh-------------------ccccccCCCCCCCcccchhhhhhhhcccc-ccCC
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLR-------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM-LPMA  133 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~-------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~  133 (143)
                      +|+|++|+|++++.++..++++++...                   .+|+.......+.++|+||||+++|++++ +..|
T Consensus       139 ~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p  218 (275)
T cd05046         139 VHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELP  218 (275)
T ss_pred             ccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999887643                   12222334456788999999999999987 5555


Q ss_pred             CC
Q 041845          134 EN  135 (143)
Q Consensus       134 ~~  135 (143)
                      +.
T Consensus       219 ~~  220 (275)
T cd05046         219 FY  220 (275)
T ss_pred             cc
Confidence            53

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.94  E-value=9.1e-27  Score=155.81  Aligned_cols=132  Identities=29%  Similarity=0.417  Sum_probs=110.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+|++++++.+. ....+++|||+++++|.+.+.+.....+++.....++.+++.|+.|||+   .+++|+|++|
T Consensus        55 l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i~H~di~p  130 (260)
T cd05070          55 MKKLRHDKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRS  130 (260)
T ss_pred             HHhcCCCceEEEEeEEC-CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCcc
Confidence            35789999999999874 4568899999999999999866555567889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .||++++++.+++.|||.+...                   |+......++.++|+||||+++|++++ +..|+..
T Consensus       131 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~  206 (260)
T cd05070         131 ANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG  206 (260)
T ss_pred             ceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999875422                   222233456789999999999999998 6666643

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.2e-26  Score=155.08  Aligned_cols=130  Identities=27%  Similarity=0.308  Sum_probs=108.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++++++. .+..++++||+++++|.+++....  .+++..+..++.|++.++.+||+   .+++|+|++|
T Consensus        50 l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~---~~i~H~di~p  123 (257)
T cd05060          50 MAQLDHPCIVRLIGVCK-GEPLMLVMELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLES---KHFVHRDLAA  123 (257)
T ss_pred             HHhcCCCCeeeEEEEEc-CCceEEEEEeCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhh---cCeeccCccc
Confidence            35689999999999875 456789999999999999996543  67889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                     +|+......++.++|+||||+++|++++ +..|+..
T Consensus       124 ~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~  201 (257)
T cd05060         124 RNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGE  201 (257)
T ss_pred             ceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCccc
Confidence            999999999999999986542                     2233334556789999999999999997 6776653

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.94  E-value=4.9e-27  Score=158.45  Aligned_cols=130  Identities=23%  Similarity=0.309  Sum_probs=111.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+++++++..++..++|+||+++++|.+.+..   ..+.+..+..++.|++.|+.|+|+   ++++|+|++|
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~---~~ivH~dl~p  129 (277)
T cd06642          56 LSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHS---ERKIHRDIKA  129 (277)
T ss_pred             HHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhc---CCeeccCCCh
Confidence            3578999999999999999999999999999999998843   357888889999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+++.|||.+..                  +|+......++.++|+||||+++|+|+++..|+..
T Consensus       130 ~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~  203 (277)
T cd06642         130 ANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSD  203 (277)
T ss_pred             heEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcc
Confidence            999999999999999986532                  22223344567889999999999999998877653

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.94  E-value=5.4e-27  Score=169.21  Aligned_cols=131  Identities=24%  Similarity=0.342  Sum_probs=114.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |-.|+|+|++++||+..+ ....||||.++.|+|.+.+++.....+.....+.++.||+.|+.||-+   ++++||||..
T Consensus       165 M~~L~H~hliRLyGvVl~-qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLes---krlvHRDLAA  240 (1039)
T KOG0199|consen  165 MLKLQHPHLIRLYGVVLD-QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLES---KRLVHRDLAA  240 (1039)
T ss_pred             HHhccCcceeEEeeeecc-chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhh
Confidence            357899999999999987 778899999999999999987667788889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      +|+++.....+||+|||+-+-.                     ++.+....++.++|+|++||++|||++ |..|+.
T Consensus       241 RNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~  317 (1039)
T KOG0199|consen  241 RNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWV  317 (1039)
T ss_pred             hhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCC
Confidence            9999999999999999986532                     222445678899999999999999998 566665

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.94  E-value=7.8e-27  Score=161.41  Aligned_cols=131  Identities=24%  Similarity=0.369  Sum_probs=109.0

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      +++ +||||+++++++...+..++++||+++++|.+++.+..              ...+.+..+..++.|++.|+.|||
T Consensus        72 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH  151 (334)
T cd05100          72 KMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA  151 (334)
T ss_pred             HhhcCCCCeeeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence            456 79999999999999899999999999999999986432              234677888899999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~  126 (143)
                      +   ++++|+|++|+||+++.++.++++|||.++.                    +|+......++.++|+||||+++||
T Consensus       152 ~---~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e  228 (334)
T cd05100         152 S---QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWE  228 (334)
T ss_pred             H---CCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHH
Confidence            7   8999999999999999999999999986532                    2222334567788999999999999


Q ss_pred             ccc-ccCCCC
Q 041845          127 PAM-LPMAEN  135 (143)
Q Consensus       127 ~~~-~~~~~~  135 (143)
                      |++ +..|+.
T Consensus       229 l~~~g~~p~~  238 (334)
T cd05100         229 IFTLGGSPYP  238 (334)
T ss_pred             HHhcCCCCCC
Confidence            987 555554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.94  E-value=9.9e-27  Score=160.53  Aligned_cols=132  Identities=24%  Similarity=0.292  Sum_probs=109.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||++++++|..++..++++||+.++++.+.+.+.....+++..+..++.|++.|+.|||+   .+++|+|+||+
T Consensus        54 ~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivHrDlkp~  130 (328)
T cd08226          54 HFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQ---NGYIHRNIKAS  130 (328)
T ss_pred             HhCCCCCcceEeeeEecCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHH
Confidence            457899999999999999999999999999999998866544567888889999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhh-------------------------ccccccCC--CCCCCcccchhhhhhhhccccccCCC
Q 041845           82 NILLDENWVAKHSRERQLR-------------------------LLGSRILP--AKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~-------------------------~~~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ||+++.++..++.+++...                         ..|+....  ..++.++|+||+||++|+|+++..|+
T Consensus       131 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~  210 (328)
T cd08226         131 HILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPF  210 (328)
T ss_pred             HEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            9999998888888765321                         12222222  23578899999999999999987777


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       211 ~~  212 (328)
T cd08226         211 QD  212 (328)
T ss_pred             CC
Confidence            54

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.94  E-value=9.8e-27  Score=157.36  Aligned_cols=131  Identities=21%  Similarity=0.319  Sum_probs=108.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      +.++||||+++++.+.+....++++||+++++|.+++....              ...+++..+..++.|++.|+.|+|+
T Consensus        63 ~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~  142 (283)
T cd05091          63 SRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS  142 (283)
T ss_pred             hcCCCCCcCeEEEEEcCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999874221              1346777888999999999999997


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~  127 (143)
                         .+++|+|+||.||++++++.+|++|||.+..                    +|+......++.++|+||+||++|||
T Consensus       143 ---~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  219 (283)
T cd05091         143 ---HHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEV  219 (283)
T ss_pred             ---cCccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHH
Confidence               8999999999999999999999999996431                    22333445678899999999999999


Q ss_pred             cc-ccCCCC
Q 041845          128 AM-LPMAEN  135 (143)
Q Consensus       128 ~~-~~~~~~  135 (143)
                      ++ +..|+.
T Consensus       220 ~~~g~~p~~  228 (283)
T cd05091         220 FSYGLQPYC  228 (283)
T ss_pred             HcCCCCCCC
Confidence            97 555543

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.94  E-value=1.1e-26  Score=154.94  Aligned_cols=133  Identities=31%  Similarity=0.389  Sum_probs=112.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-------KPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      ++.++|+|++++++++.++...+++|||+++++|.+++....       ...+++.....++.|++.|+.+||+   .++
T Consensus        50 l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~---~~i  126 (262)
T cd00192          50 MKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKF  126 (262)
T ss_pred             HhhcCCCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHc---CCc
Confidence            356789999999999999999999999999999999986541       3578899999999999999999998   899


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhhccc--------------------cccCCCCCCCcccchhhhhhhhcccc-ccC
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLRLLG--------------------SRILPAKLTEKSDVYSFGVLCARPAM-LPM  132 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~~~~--------------------~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~  132 (143)
                      +|+|++|.||+++.++.++++|||.+....                    +......++.++|+||+|+++|+|++ +..
T Consensus       127 ~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~  206 (262)
T cd00192         127 VHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGAT  206 (262)
T ss_pred             ccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCC
Confidence            999999999999999999999998765332                    22233466788999999999999998 466


Q ss_pred             CCCc
Q 041845          133 AENE  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      |+..
T Consensus       207 p~~~  210 (262)
T cd00192         207 PYPG  210 (262)
T ss_pred             CCCC
Confidence            6543

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.94  E-value=1.3e-26  Score=156.55  Aligned_cols=130  Identities=25%  Similarity=0.327  Sum_probs=107.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.. ...++++|++++|+|.+.+... ...+++.....++.|++.|+.|||+   ++++|+|++|+
T Consensus        64 ~~~~~~~i~~~~~~~~~-~~~~l~~~~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~lH~---~~iiH~dlkp~  138 (279)
T cd05109          64 AGVGSPYVCRLLGICLT-STVQLVTQLMPYGCLLDYVREN-KDRIGSQDLLNWCVQIAKGMSYLEE---VRLVHRDLAAR  138 (279)
T ss_pred             HhcCCCCCceEEEEEcC-CCcEEEEEcCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccccccc
Confidence            45789999999999865 4567899999999999998543 3467888999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||++++++.++++|||.+..                    +|+......++.++|+|||||++||+++ +..|++.
T Consensus       139 Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  214 (279)
T cd05109         139 NVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDG  214 (279)
T ss_pred             eEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999996542                    1222334556788999999999999987 6666653

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.1e-26  Score=155.34  Aligned_cols=129  Identities=20%  Similarity=0.161  Sum_probs=110.8

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      ..+|+|++++++++..++..++++||+++++|.+++...  ..+++.++..++.|++.|+.|+|+   .+++|+|++|.|
T Consensus        53 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~---~~i~H~dl~p~n  127 (260)
T cd05611          53 QGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQ---RGIIHRDIKPEN  127 (260)
T ss_pred             cCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHH
Confidence            458999999999999999999999999999999998543  367888899999999999999998   899999999999


Q ss_pred             EEEcCCCcccccccchhhc--------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           83 ILLDENWVAKHSRERQLRL--------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        83 il~~~~~~~k~~~~~~~~~--------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+++.++.++++|||....              .|+......++.++|+||+|+++|+++++..|+..
T Consensus       128 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  195 (260)
T cd05611         128 LLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHA  195 (260)
T ss_pred             eEECCCCcEEEeecccceeccccccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCC
Confidence            9999999999999986542              22333334568899999999999999998777654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=7.2e-27  Score=157.37  Aligned_cols=129  Identities=25%  Similarity=0.288  Sum_probs=111.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++.+.+.++...++++||+++++|.+.+...   .+++.....++.|++.++.++|+   .+++|+|++|.
T Consensus        54 ~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~---~~i~h~dl~p~  127 (274)
T cd06609          54 SQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHE---EGKIHRDIKAA  127 (274)
T ss_pred             HHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHH
Confidence            5678999999999999999999999999999999998543   67889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |++++.++.++++|||.+...                  |+......++.++|+||||+++|+|+++..|+..
T Consensus       128 ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~  200 (274)
T cd06609         128 NILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSD  200 (274)
T ss_pred             HEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            999999999999999865322                  2223344578899999999999999998877753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.93  E-value=8.6e-27  Score=156.40  Aligned_cols=130  Identities=22%  Similarity=0.325  Sum_probs=109.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++.+..++..+++|||+++++|.+.+...  ..+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        60 l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p  134 (267)
T cd06646          60 VKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLHS---KGKMHRDIKG  134 (267)
T ss_pred             HHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCH
Confidence            35679999999999999999999999999999999988543  367888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------cccc---CCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRI---LPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~---~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++.++++|||.+...                  |+..   ....++.++|+||+||++|+|+++..|+.
T Consensus       135 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~  210 (267)
T cd06646         135 ANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMF  210 (267)
T ss_pred             HHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999865421                  1111   12335678999999999999999776653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.93  E-value=1.2e-26  Score=154.99  Aligned_cols=129  Identities=26%  Similarity=0.288  Sum_probs=106.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++. ....+++|||+++++|.+++...  ..+++.....++.|++.|+.++|+   .+++|+|++|.
T Consensus        51 ~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp~  124 (257)
T cd05116          51 QQLDNPYIVRMIGICE-AESWMLVMELAELGPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEE---TNFVHRDLAAR  124 (257)
T ss_pred             HhCCCCCcceEEEEEc-CCCcEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccchh
Confidence            5679999999999875 45678999999999999998543  367889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                     |+......++.++|+|||||++|||++ +..|+..
T Consensus       125 nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~  201 (257)
T cd05116         125 NVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKG  201 (257)
T ss_pred             hEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999875422                     121223455678999999999999997 6666653

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.93  E-value=7.1e-27  Score=157.12  Aligned_cols=131  Identities=27%  Similarity=0.377  Sum_probs=108.9

Q ss_pred             CC-CCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            3 NL-RHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      .+ +|+|++++++.+...      ...++++||+++++|.+++.......+++.....++.|++.|+.|||+   .+++|
T Consensus        58 ~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~---~~ivh  134 (272)
T cd06637          58 KYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIH  134 (272)
T ss_pred             HhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCcc
Confidence            44 699999999998753      357899999999999999865444567889999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc------------------cccccC-----CCCCCCcccchhhhhhhhccccccC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL------------------LGSRIL-----PAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      +|++|+||+++.++.+++.|||.+..                  +|+.+.     ...++.++|+||+||++|+|+++..
T Consensus       135 ~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~  214 (272)
T cd06637         135 RDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAP  214 (272)
T ss_pred             CCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence            99999999999999999999987642                  122221     2346778999999999999999887


Q ss_pred             CCCc
Q 041845          133 AENE  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      |+..
T Consensus       215 p~~~  218 (272)
T cd06637         215 PLCD  218 (272)
T ss_pred             Cccc
Confidence            7753

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.93  E-value=1.2e-26  Score=157.74  Aligned_cols=132  Identities=25%  Similarity=0.355  Sum_probs=110.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC---------CCCCcHHHHHHHHHHHHHHHhHhhcCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH---------KPPLQWMWRLKICIGAARGLHYLHTGTRN   71 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~   71 (143)
                      |++++||||+++++++..++..++++|++++++|.+++.+..         ...+++.....++.|++.|+.|||+   .
T Consensus        73 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~---~  149 (296)
T cd05051          73 LSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLES---L  149 (296)
T ss_pred             HHhcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH---c
Confidence            357899999999999999899999999999999999985432         1257888999999999999999998   8


Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc--
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM--  129 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~--  129 (143)
                      +++|+|++|+||+++.++.++++|||....                    +|+......++.++|+|||||++|++++  
T Consensus       150 ~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~  229 (296)
T cd05051         150 NFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLC  229 (296)
T ss_pred             CccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcC
Confidence            999999999999999999999999987542                    2222334467889999999999999987  


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..|+.
T Consensus       230 ~~~p~~  235 (296)
T cd05051         230 REQPYE  235 (296)
T ss_pred             CCCCCC
Confidence            444443

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.93  E-value=1.2e-26  Score=157.46  Aligned_cols=131  Identities=21%  Similarity=0.261  Sum_probs=109.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++.+++..++||||+++ +|.+.+.... ..+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        57 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~---~~i~H~dl~p  131 (291)
T cd07844          57 LKDLKHANIVTLHDIIHTKKTLTLVFEYLDT-DLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQ---RRVLHRDLKP  131 (291)
T ss_pred             HhhCCCcceeeEEEEEecCCeEEEEEecCCC-CHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccCCH
Confidence            4578999999999999999999999999975 9998885443 367888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------c-ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------L-GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~-~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                 . |+.... ..++.++|+||+|+++|+|+++..++..
T Consensus       132 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~  206 (291)
T cd07844         132 QNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPG  206 (291)
T ss_pred             HHEEEcCCCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999986532                 1 221222 3467889999999999999998777643

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=1.1e-26  Score=157.28  Aligned_cols=127  Identities=26%  Similarity=0.396  Sum_probs=105.9

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++++..  ....++++||+++++|.+++.+. ...+++.....++.|++.|+.|||+   .+++|+|+
T Consensus        59 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~aL~~LH~---~~i~H~dl  134 (284)
T cd05081          59 LKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKH-RERLDHRKLLLYASQICKGMEYLGS---KRYVHRDL  134 (284)
T ss_pred             HHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHH---CCceeccC
Confidence            357899999999998754  35688999999999999998543 2357888999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +|+||+++.++.++++|||.+...                     |+......++.++|+||||+++|||+++.
T Consensus       135 kp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~  208 (284)
T cd05081         135 ATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYS  208 (284)
T ss_pred             CHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999876532                     22223345678899999999999999853

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.93  E-value=1.1e-26  Score=154.82  Aligned_cols=131  Identities=25%  Similarity=0.296  Sum_probs=112.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++.+.++...++++|++++++|.+.+... ...+++.....++.|++.|+.|||+   .+++|+|++|.
T Consensus        53 ~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~  128 (256)
T cd06612          53 KQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKIT-NKTLTEEEIAAILYQTLKGLEYLHS---NKKIHRDIKAG  128 (256)
T ss_pred             HhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcc
Confidence            5679999999999999999999999999999999988543 3467889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+++.|||.+...                  |+......++.++|+||||+++|+|+++..|+..
T Consensus       129 ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~  201 (256)
T cd06612         129 NILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSD  201 (256)
T ss_pred             eEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999865432                  2222334567889999999999999998777654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.8e-27  Score=163.29  Aligned_cols=131  Identities=23%  Similarity=0.293  Sum_probs=114.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++++||.++++.+..+..+|++|||+.+|++.+.+..+  ..+++..+..+++++..|+.|+|.   .+.+|||+|+
T Consensus        65 Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~~--~~~~E~~i~~ilre~l~~l~ylH~---~~kiHrDIKa  139 (467)
T KOG0201|consen   65 LSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSG--NILDEFEIAVILREVLKGLDYLHS---EKKIHRDIKA  139 (467)
T ss_pred             HHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhccC--CCCccceeeeehHHHHHHhhhhhh---cceecccccc
Confidence            45788999999999999999999999999999999998543  244677777788999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .||++...+.+|+.|||.+.                  ++|+.+.+..|+.++||||||++.+||++|..|...
T Consensus       140 anil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~  213 (467)
T KOG0201|consen  140 ANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSK  213 (467)
T ss_pred             cceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcc
Confidence            99999999999999998753                  456666777999999999999999999998877664

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.93  E-value=1.9e-26  Score=153.85  Aligned_cols=133  Identities=26%  Similarity=0.297  Sum_probs=110.9

Q ss_pred             CCCCCCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +++++|+|++++.+.+.. ...+++++||+++++|.+.+.......+++.++..++.+++.++.++|+   .+++|+|++
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~---~~i~H~di~  129 (257)
T cd08223          53 LSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHE---KHILHRDLK  129 (257)
T ss_pred             HHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCC
Confidence            356799999999998764 4468899999999999998865545568899999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||+++.++.++++|||.+...                  |+......++.++|+||+|+++++++++..|+..
T Consensus       130 p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~  204 (257)
T cd08223         130 TQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNA  204 (257)
T ss_pred             chhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999865322                  2223344567889999999999999998766653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.93  E-value=1.1e-26  Score=158.38  Aligned_cols=129  Identities=21%  Similarity=0.290  Sum_probs=110.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+..++..+++|||+++++|.+++.+   ..+++.....++.|++.++.+||+   .+++|+||+|+
T Consensus        71 ~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~---~~i~H~dL~p~  144 (297)
T cd06656          71 RENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLHS---NQVIHRDIKSD  144 (297)
T ss_pred             HhCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHH
Confidence            567999999999999999999999999999999998853   256788889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                  |+......++.++|+||+|+++|+++++..|+..
T Consensus       145 Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~  217 (297)
T cd06656         145 NILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLN  217 (297)
T ss_pred             HEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999865421                  2223344567889999999999999998877754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.93  E-value=5.4e-27  Score=159.93  Aligned_cols=129  Identities=21%  Similarity=0.279  Sum_probs=110.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||++++++.+..++..++++||+++++|..++..   ..+++..+..++.|++.|+.+||+   .+++|+|++|
T Consensus        72 l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dl~p  145 (297)
T cd06659          72 MRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHS---QGVIHRDIKS  145 (297)
T ss_pred             HHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCH
Confidence            3568999999999999999999999999999999987743   357888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++.++++|||.+..                  +|+......++.++|+||+||++|+|+++..|+.
T Consensus       146 ~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~  218 (297)
T cd06659         146 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYF  218 (297)
T ss_pred             HHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999987532                  2222334567889999999999999999877764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.93  E-value=1e-26  Score=159.48  Aligned_cols=132  Identities=23%  Similarity=0.320  Sum_probs=104.0

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcC-------CCCCCcHHHHHHHHHHHHHHHhHhhcCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNN-------HKPPLQWMWRLKICIGAARGLHYLHTGTRN   71 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~   71 (143)
                      |+.++||||+++++++..  +...++++||+.+ ++.+.+...       ....+++..+..++.|++.|+.|||+   .
T Consensus        52 l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~---~  127 (317)
T cd07867          52 LRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA---N  127 (317)
T ss_pred             HHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            356899999999999853  4578899999865 777776321       12346788889999999999999998   8


Q ss_pred             CeeecCCCCCcEEE----cCCCcccccccchhhcc---------------------ccccCC-CCCCCcccchhhhhhhh
Q 041845           72 TIIHRDVKSTNILL----DENWVAKHSRERQLRLL---------------------GSRILP-AKLTEKSDVYSFGVLCA  125 (143)
Q Consensus        72 ~i~h~~l~~~nil~----~~~~~~k~~~~~~~~~~---------------------~~~~~~-~~~~~~~Di~s~G~~~~  125 (143)
                      +++|+|+||+||++    +..+.++++|||.+...                     |+.+.. ..++.++|+||+||++|
T Consensus       128 ~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~  207 (317)
T cd07867         128 WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFA  207 (317)
T ss_pred             CEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHH
Confidence            99999999999999    45578999999976421                     222222 34678899999999999


Q ss_pred             ccccccCCCCc
Q 041845          126 RPAMLPMAENE  136 (143)
Q Consensus       126 ~~~~~~~~~~~  136 (143)
                      ||+|+..++..
T Consensus       208 el~tg~~~f~~  218 (317)
T cd07867         208 ELLTSEPIFHC  218 (317)
T ss_pred             HHHhCCCCccc
Confidence            99998877753

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.93  E-value=1.2e-26  Score=156.87  Aligned_cols=131  Identities=23%  Similarity=0.263  Sum_probs=110.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++++|+|++++++++..++..++++||++++.+......  ...+++..+..++.|++.++.|||+   .+++|+|++|
T Consensus        54 l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~ql~~~l~~LH~---~~i~H~dl~p  128 (286)
T cd07847          54 LKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKN--PRGVPEHLIKKIIWQTLQAVNFCHK---HNCIHRDVKP  128 (286)
T ss_pred             HHhCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCh
Confidence            3568899999999999999999999999998887776633  2367889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                  |+.... ..++.++|+||+|+++|+|+++..|+..
T Consensus       129 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~  203 (286)
T cd07847         129 ENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPG  203 (286)
T ss_pred             hhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999876432                  111222 3467889999999999999998877653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.93  E-value=1.8e-26  Score=154.38  Aligned_cols=131  Identities=26%  Similarity=0.371  Sum_probs=109.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++++++ ..+..++++|++++++|.+.+.......+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        55 l~~l~h~~i~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~---~~i~H~dl~p  130 (260)
T cd05067          55 MKQLQHPRLVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRA  130 (260)
T ss_pred             HHhcCCcCeeeEEEEE-ccCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecccccH
Confidence            3578999999999876 45678999999999999998865555677888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc-------------------cccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLLG-------------------SRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .|++++.++.++++|||......                   +......++.++|+||||+++|++++ +..|+.
T Consensus       131 ~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  205 (260)
T cd05067         131 ANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYP  205 (260)
T ss_pred             HhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999998664222                   21223456778999999999999998 777765

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.93  E-value=1.4e-26  Score=156.62  Aligned_cols=128  Identities=18%  Similarity=0.133  Sum_probs=109.5

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .+|||++.+++.+..++..+++|||+++++|.+++...  ..+++.....++.|++.|+.|||+   .+++|+|++|+||
T Consensus        54 ~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~---~~ivH~dikp~Ni  128 (279)
T cd05633          54 GDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHN---RFVVYRDLKPANI  128 (279)
T ss_pred             CCCCcEeEEEEEEecCCeEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcCCCCCCHHHE
Confidence            47899999999999989999999999999999888543  368899999999999999999998   8999999999999


Q ss_pred             EEcCCCcccccccchhhc----------------cccccC-CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           84 LLDENWVAKHSRERQLRL----------------LGSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~----------------~~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +++.++.++++|||.+..                +|+... ...++.++|+||+||++|+++++..|+..
T Consensus       129 l~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~  198 (279)
T cd05633         129 LLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQ  198 (279)
T ss_pred             EECCCCCEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCC
Confidence            999999999999996531                122222 23467889999999999999998887753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.93  E-value=1.7e-26  Score=156.13  Aligned_cols=129  Identities=18%  Similarity=0.130  Sum_probs=110.1

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      ..||||+++.+.+.+.+..++++||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+||
T Consensus        54 ~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~di~p~ni  128 (278)
T cd05606          54 GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHN---RFVVYRDLKPANI  128 (278)
T ss_pred             CCCCcEeeeeeeeecCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCCCCHHHE
Confidence            47999999999999999999999999999999888543  468899999999999999999998   8999999999999


Q ss_pred             EEcCCCcccccccchhhc----------------cccccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           84 LLDENWVAKHSRERQLRL----------------LGSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~----------------~~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +++.++.++++|||.+..                +|+... ...++.++|+||+|+++|+|+++..|+...
T Consensus       129 li~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         129 LLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             EECCCCCEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCC
Confidence            999999999999986531                122222 224678899999999999999988887644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.93  E-value=7.9e-27  Score=156.51  Aligned_cols=131  Identities=22%  Similarity=0.298  Sum_probs=111.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++|+||+++++++..++..++++||+++++|.+++...  ....+++.....++.|++.++.|||+   .+++|+|++
T Consensus        57 ~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~  133 (267)
T cd08229          57 KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHS---RRVMHRDIK  133 (267)
T ss_pred             HHccCCchhhhhheeEeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCC
Confidence            5678999999999999999999999999999999987532  23467888999999999999999997   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |+||+++.++.++++|||.+...                  |+......++.++|+||+|+++|+|+++..|+.
T Consensus       134 p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~  207 (267)
T cd08229         134 PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFY  207 (267)
T ss_pred             HHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999865422                  222334456778999999999999999877764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.93  E-value=8e-27  Score=168.59  Aligned_cols=133  Identities=23%  Similarity=0.241  Sum_probs=109.7

Q ss_pred             CCCCCCCcceeeEEeecCC--------chhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENK--------EMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRN   71 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~--------~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~   71 (143)
                      ..++|+|++++++.+....        .++++|||+++|+|.+.+..+  ....+++..+..++.|++.|+.|+|+   .
T Consensus        86 ~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~---~  162 (496)
T PTZ00283         86 LNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS---K  162 (496)
T ss_pred             hcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            4578999999988775432        367999999999999988543  23467888899999999999999998   8


Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +++||||||+||+++.++.+|++|||++..                    +|+......++.++|+|||||++|||+++.
T Consensus       163 ~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~  242 (496)
T PTZ00283        163 HMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLK  242 (496)
T ss_pred             CEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999997532                    223334456788999999999999999988


Q ss_pred             CCCCcc
Q 041845          132 MAENEQ  137 (143)
Q Consensus       132 ~~~~~~  137 (143)
                      .|+...
T Consensus       243 ~Pf~~~  248 (496)
T PTZ00283        243 RPFDGE  248 (496)
T ss_pred             CCCCCC
Confidence            887643

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.93  E-value=1.9e-26  Score=155.06  Aligned_cols=132  Identities=24%  Similarity=0.315  Sum_probs=105.6

Q ss_pred             CCCCCCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhhcC----CCCCCcHHHHHHHHHHHHHHHhHhhcCCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLYNN----HKPPLQWMWRLKICIGAARGLHYLHTGTR   70 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lh~~~~   70 (143)
                      |+.++|+||+++++.+...      ...++++||+++++|.+++...    ....+++.....++.|++.|+.|||+   
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---  130 (272)
T cd05075          54 MKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSS---  130 (272)
T ss_pred             HHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHH---
Confidence            3568999999999987532      2467899999999998877321    22356788899999999999999998   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhccc--------------------cccCCCCCCCcccchhhhhhhhcccc-
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------------------SRILPAKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~--------------------~~~~~~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                      ++++|+|++|+||+++.++.++++|||.+....                    +......++.++|+||||+++|++++ 
T Consensus       131 ~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~  210 (272)
T cd05075         131 KSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATR  210 (272)
T ss_pred             CCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcC
Confidence            899999999999999999999999999765321                    11223456788999999999999988 


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..|+.
T Consensus       211 g~~p~~  216 (272)
T cd05075         211 GQTPYP  216 (272)
T ss_pred             CCCCCC
Confidence            555554

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.93  E-value=1.6e-26  Score=154.99  Aligned_cols=132  Identities=22%  Similarity=0.293  Sum_probs=110.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++.+.+.+..++++||+++++|.+.+...  ....++......++.|++.|+.|||+   .+++|+|+
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl  132 (267)
T cd08228          56 LKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHS---RRVMHRDI  132 (267)
T ss_pred             HHhCCCcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCC
Confidence            36789999999999999999999999999999999887432  22456788889999999999999997   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +|+||+++.++.+++.|||.+..                  +|+......++.++|+||+|+++|+|+++..|+.
T Consensus       133 ~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~  207 (267)
T cd08228         133 KPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFY  207 (267)
T ss_pred             CHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999999986432                  2333334456788999999999999999776654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=8.8e-27  Score=157.80  Aligned_cols=133  Identities=23%  Similarity=0.244  Sum_probs=110.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++++|+||+++++.+...+..++++||+++++|.+++.... ...+++.....++.|++.++.|||+  ..+++|+||+|
T Consensus        54 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p  131 (286)
T cd06622          54 HKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKP  131 (286)
T ss_pred             HhcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCH
Confidence            56799999999999999999999999999999998885431 2367889999999999999999995  25899999999


Q ss_pred             CcEEEcCCCcccccccchhhc----------------cccccCC------CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL----------------LGSRILP------AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~----------------~~~~~~~------~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                +|+....      ..++.++|+||+||++|+++++..|+..
T Consensus       132 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  209 (286)
T cd06622         132 TNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPP  209 (286)
T ss_pred             HHEEECCCCCEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCC
Confidence            999999999999999986532                1222211      1247789999999999999998888754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.93  E-value=1.6e-26  Score=154.81  Aligned_cols=133  Identities=24%  Similarity=0.304  Sum_probs=112.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |++++|+|++++++.+.+++..+++|||+++++|..++...  ....+++.....++.+++.++.+||+   .+++|+|+
T Consensus        56 l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl  132 (267)
T cd08224          56 LKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS---KRIMHRDI  132 (267)
T ss_pred             HHhCCCCCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecCCc
Confidence            35679999999999999999999999999999999988532  23457888999999999999999997   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++..++.|||.+..                  +|+......++.++|+||+|+++|+++++..|+..
T Consensus       133 ~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  208 (267)
T cd08224         133 KPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  208 (267)
T ss_pred             ChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCccc
Confidence            99999999999999999986532                  22323445577889999999999999998777643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.93  E-value=1.5e-26  Score=154.90  Aligned_cols=132  Identities=22%  Similarity=0.196  Sum_probs=112.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+.+++..++++||+++++|.+++.+.  ..++...+..++.|++.|+.|+|+   .+++|+|++|+
T Consensus        48 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lH~---~~~~h~dl~~~  122 (262)
T cd05572          48 EECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDR--GLFDEYTARFYIACVVLAFEYLHN---RGIIYRDLKPE  122 (262)
T ss_pred             HhCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHH
Confidence            5679999999999999999999999999999999998543  357888889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           82 NILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      ||+++.++.+++.|||.....                 |+......++.++|+||+|+++|+++++..|+....
T Consensus       123 nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  196 (262)
T cd05572         123 NLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDD  196 (262)
T ss_pred             HEEEcCCCCEEEeeCCcccccCcccccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCC
Confidence            999999999999999875432                 222233456788999999999999999888776443

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.93  E-value=7.5e-27  Score=163.18  Aligned_cols=128  Identities=20%  Similarity=0.252  Sum_probs=105.9

Q ss_pred             CCCCCCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      ++.++||||+++++++...      ...++||||+++ ++...+..    .++...+..++.|++.|+.|||+   ++++
T Consensus        77 l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~---~~iv  148 (364)
T cd07875          77 MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS---AGII  148 (364)
T ss_pred             HHhcCCCCccccceeecccccccccCeEEEEEeCCCC-CHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhh---CCee
Confidence            3568999999999988643      347899999975 77776632    46778888999999999999998   8999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||||+|+||+++.++.++++|||.+..                 +|+.+....++.++|+||+||++|+|+++..|+..
T Consensus       149 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~  227 (364)
T cd07875         149 HRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG  227 (364)
T ss_pred             cCCCCHHHEEECCCCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999997643                 22333445678899999999999999998877764

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.93  E-value=1.9e-26  Score=153.69  Aligned_cols=134  Identities=26%  Similarity=0.345  Sum_probs=112.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||++++++.+..++..++++||+++++|.+++.......+++..+..++.+++.++.+||+   ++++|+|++|
T Consensus        53 l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~  129 (256)
T cd08220          53 LKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHT---KLILHRDLKT  129 (256)
T ss_pred             HhhCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCH
Confidence            4678999999999999989999999999999999999976555567889999999999999999998   8999999999


Q ss_pred             CcEEEcCC-Ccccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDEN-WVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~-~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.+ +.++++|||.....                 |+......++.++|+||+|+++|+++++..++...
T Consensus       130 ~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  204 (256)
T cd08220         130 QNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA  204 (256)
T ss_pred             HHEEEcCCCCEEEEccCCCceecCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccC
Confidence            99999854 45789998865422                 22233445678899999999999999987776543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.93  E-value=2.3e-26  Score=153.91  Aligned_cols=132  Identities=25%  Similarity=0.353  Sum_probs=110.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++.+.+.+ ...++++||+++++|.+++.+......++..+..++.|++.|+.|+|+   .+++|+|++|
T Consensus        55 l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl~p  130 (260)
T cd05073          55 MKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRA  130 (260)
T ss_pred             HHhcCCCCcceEEEEEcC-CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHh---CCccccccCc
Confidence            356899999999999877 778999999999999999976555567888889999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .|++++..+.++++|||.+..                   +|+......++.++|+||||+++|++++ +..|+..
T Consensus       131 ~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~  206 (260)
T cd05073         131 ANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPG  206 (260)
T ss_pred             ceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCC
Confidence            999999999999999986532                   1222333456778999999999999998 7766653

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.93  E-value=2.9e-26  Score=156.67  Aligned_cols=129  Identities=29%  Similarity=0.385  Sum_probs=106.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+..+ ..++++||+++|++.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        64 ~~l~h~niv~~~~~~~~~-~~~~v~e~~~~g~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~dikp~  138 (303)
T cd05110          64 ASMDHPHLVRLLGVCLSP-TIQLVTQLMPHGCLLDYVHEH-KDNIGSQLLLNWCVQIAKGMMYLEE---RRLVHRDLAAR  138 (303)
T ss_pred             HhCCCCCcccEEEEEcCC-CceeeehhcCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHhh---cCeeccccccc
Confidence            567999999999998654 467899999999999998543 3357788889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      ||+++.++.+|++|||.+...                    |+......++.++|+||||+++||+++ +..|+.
T Consensus       139 Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~  213 (303)
T cd05110         139 NVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD  213 (303)
T ss_pred             eeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999876532                    112223456778999999999999886 666654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.93  E-value=1.4e-26  Score=157.58  Aligned_cols=131  Identities=21%  Similarity=0.311  Sum_probs=111.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++|||++++++.+..++..++++||+++++|.+++.+.   .+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        70 l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~---~gi~H~dL~p  143 (293)
T cd06647          70 MRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKS  143 (293)
T ss_pred             HhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHh---CCEeeccCCH
Confidence            35689999999999999999999999999999999988543   46788889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||...                  ..|+......++.++|+||||+++|+++++..|+..+
T Consensus       144 ~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~  218 (293)
T cd06647         144 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (293)
T ss_pred             HHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999998643                  1233333455678899999999999999988887644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.93  E-value=2.6e-26  Score=155.07  Aligned_cols=133  Identities=26%  Similarity=0.364  Sum_probs=110.1

Q ss_pred             CCCCCCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcCCC------CCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            1 LSNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNNHK------PPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      |+.++|+||+++++++.. +...+++++|+++++|.+++.....      ..+++.....++.|++.|+.|||+   .++
T Consensus        62 l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~---~~i  138 (280)
T cd05043          62 LYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHK---RGV  138 (280)
T ss_pred             HHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCE
Confidence            356799999999998765 5678899999999999998854322      457889999999999999999997   899


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccC
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPM  132 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~  132 (143)
                      +|+|++|.|+++++++.++++|||.++..                    |+......++.++|+||||+++|++++ +..
T Consensus       139 ~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~  218 (280)
T cd05043         139 IHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQT  218 (280)
T ss_pred             eecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCC
Confidence            99999999999999999999999876421                    222233456789999999999999998 777


Q ss_pred             CCCc
Q 041845          133 AENE  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      |+..
T Consensus       219 p~~~  222 (280)
T cd05043         219 PYVE  222 (280)
T ss_pred             CcCc
Confidence            7654

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.93  E-value=9.8e-27  Score=156.06  Aligned_cols=131  Identities=26%  Similarity=0.354  Sum_probs=110.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++.+.+++..++++||+++++|.+.+.+.  ..+++.....++.|++.|+.+||+   .+++|+|++|
T Consensus        57 l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~ql~~al~~LH~---~~i~H~~i~~  131 (268)
T cd06630          57 MARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKY--GAFKEAVIINYTEQLLRGLSYLHE---NQIIHRDVKG  131 (268)
T ss_pred             HHHcCCCceehhhceeccCCeEEEEEeccCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCH
Confidence            35689999999999999999999999999999999998543  367888899999999999999998   8999999999


Q ss_pred             CcEEEcCCC-cccccccchhhcc----------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENW-VAKHSRERQLRLL----------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~-~~k~~~~~~~~~~----------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .||+++.++ .++++|||.+...                      |+......++.++|+||+|+++++++++..|+..
T Consensus       132 ~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  210 (268)
T cd06630         132 ANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNA  210 (268)
T ss_pred             HHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence            999998665 5899999865322                      2223334667889999999999999998877753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.93  E-value=6.4e-27  Score=159.22  Aligned_cols=129  Identities=22%  Similarity=0.303  Sum_probs=110.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+..++..++++||+++++|.+.+..   ..+++.....++.|++.++.|||+   .+++|+|++|+
T Consensus        74 ~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~  147 (292)
T cd06658          74 RDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHN---QGVIHRDIKSD  147 (292)
T ss_pred             HhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCEeecCCCHH
Confidence            567999999999999999999999999999999988743   257788899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+++.|||.+...                  |+......++.++|+||+|+++||++++..|+..
T Consensus       148 Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~  220 (292)
T cd06658         148 SILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFN  220 (292)
T ss_pred             HEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999875421                  2222334567899999999999999998777653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.93  E-value=1.5e-26  Score=156.89  Aligned_cols=130  Identities=28%  Similarity=0.379  Sum_probs=108.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------------CCCCcHHHHHHHHHHHHHH
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------------KPPLQWMWRLKICIGAARG   61 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~~   61 (143)
                      ++++||||+++++++.+....++++||+++++|.+++....                    ...+++...+.++.|++.|
T Consensus        63 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~a  142 (288)
T cd05050          63 AEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAG  142 (288)
T ss_pred             HhcCCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHH
Confidence            56799999999999999899999999999999999985321                    1245677889999999999


Q ss_pred             HhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhh
Q 041845           62 LHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFG  121 (143)
Q Consensus        62 l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G  121 (143)
                      +.|+|+   ++++|+|++|.||+++.++..+++|||....                    +|+......++.++|+||||
T Consensus       143 L~~lH~---~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  219 (288)
T cd05050         143 MAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYG  219 (288)
T ss_pred             HHHHHh---CCeecccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHH
Confidence            999997   8999999999999999999999999986532                    12223345678889999999


Q ss_pred             hhhhcccc-ccCCC
Q 041845          122 VLCARPAM-LPMAE  134 (143)
Q Consensus       122 ~~~~~~~~-~~~~~  134 (143)
                      |++|+|++ +..|+
T Consensus       220 ~il~el~~~~~~p~  233 (288)
T cd05050         220 VVLWEIFSYGMQPY  233 (288)
T ss_pred             HHHHHHHhCCCCCC
Confidence            99999986 44443

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.93  E-value=7.3e-27  Score=166.96  Aligned_cols=130  Identities=28%  Similarity=0.359  Sum_probs=111.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||++++|+|. ....|+|||.++-|.|..++..+ ...++..+...++.|+..|+.||++   ...+|||+..
T Consensus       445 MrnfdHphIikLIGv~~-e~P~WivmEL~~~GELr~yLq~n-k~sL~l~tL~ly~~Qi~talaYLeS---krfVHRDIAa  519 (974)
T KOG4257|consen  445 MRNFDHPHIIKLIGVCV-EQPMWIVMELAPLGELREYLQQN-KDSLPLRTLTLYCYQICTALAYLES---KRFVHRDIAA  519 (974)
T ss_pred             HHhCCCcchhheeeeee-ccceeEEEecccchhHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHh---hchhhhhhhh
Confidence            57899999999999995 46789999999999999999654 4578889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      +|||+.+...+|++|||+.++.                   |+.+.-..++.++|+|.||+.+||++. |--||.
T Consensus       520 RNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfq  594 (974)
T KOG4257|consen  520 RNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQ  594 (974)
T ss_pred             hheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccc
Confidence            9999999999999999998743                   233334467899999999999999876 444444

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.93  E-value=3.1e-26  Score=152.43  Aligned_cols=131  Identities=29%  Similarity=0.371  Sum_probs=110.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++++|+||+++++++.+....++++||+++++|.+++... ...++......++.+++.++.|+|+   ++++|+|++|
T Consensus        46 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~di~p  121 (251)
T cd05041          46 LKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKK-KNRLTVKKLLQMSLDAAAGMEYLES---KNCIHRDLAA  121 (251)
T ss_pred             HHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCEehhhcCc
Confidence            35789999999999999999999999999999999998543 2356788889999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      +||+++.++.++++|||.+..                    +|+......++.++|+||+|+++|+|++ +..|+.
T Consensus       122 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~  197 (251)
T cd05041         122 RNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYP  197 (251)
T ss_pred             ceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCc
Confidence            999999999999999986532                    1222334567789999999999999998 555554

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-26  Score=149.30  Aligned_cols=130  Identities=25%  Similarity=0.320  Sum_probs=107.4

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      ..+.|.||+.+|+|..+...++-||.+.. .+...+ ++...++++..+-++...++.|+.||-+  +.+++|||+||+|
T Consensus       147 s~dcpyIV~c~GyFi~n~dV~IcMelMs~-C~ekLl-krik~piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSN  222 (391)
T KOG0983|consen  147 SHDCPYIVQCFGYFITNTDVFICMELMST-CAEKLL-KRIKGPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSN  222 (391)
T ss_pred             ccCCCeeeeeeeEEeeCchHHHHHHHHHH-HHHHHH-HHhcCCchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccc
Confidence            44579999999999999999999999843 444444 4445678888888888899999999997  6799999999999


Q ss_pred             EEEcCCCcccccccchhh-----------------ccccccCC---CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           83 ILLDENWVAKHSRERQLR-----------------LLGSRILP---AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        83 il~~~~~~~k~~~~~~~~-----------------~~~~~~~~---~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||++..|++|++|||.+.                 ++|+++..   ..|+..+|+||||+.++|++|+.+|...
T Consensus       223 ILlDe~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~  296 (391)
T KOG0983|consen  223 ILLDERGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKG  296 (391)
T ss_pred             eEEccCCCEEeecccccceeecccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCC
Confidence            999999999999999764                 23333333   3577889999999999999999888765

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.93  E-value=3.9e-26  Score=153.58  Aligned_cols=131  Identities=21%  Similarity=0.283  Sum_probs=111.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++++++..++..++++||+++++|.+.+.+.  ..+++..+..++.|++.|+.++|+   .+++|+|++|
T Consensus        62 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~~  136 (272)
T cd06629          62 LKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHS---KGILHRDLKA  136 (272)
T ss_pred             HHhcCCCCcceEEEEeccCCceEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhh---CCeeecCCCh
Confidence            35688999999999999999999999999999999998554  467888889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCC--CCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPA--KLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~--~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+++.|||.+...                    |+.....  .++.++|+||+|+++|+++++..|+..
T Consensus       137 ~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  214 (272)
T cd06629         137 DNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSD  214 (272)
T ss_pred             hhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcC
Confidence            9999999999999999866422                    1112222  367889999999999999998877653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.93  E-value=2.7e-26  Score=163.50  Aligned_cols=127  Identities=20%  Similarity=0.186  Sum_probs=108.3

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      -+||||+++.+++.++...|+|||.+.++-+.+.+....  .+. ..+..|+.+++.|+.|||+   .+++|||++|+||
T Consensus       373 ~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~~~~--~~~-~e~~~w~~~lv~Av~~LH~---~gvvhRDLkp~NI  446 (612)
T KOG0603|consen  373 RDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIRSKP--EFC-SEASQWAAELVSAVDYLHE---QGVVHRDLKPGNI  446 (612)
T ss_pred             cCCCcceeecceecCCceeeeeehhccccHHHHHHHhcc--hhH-HHHHHHHHHHHHHHHHHHh---cCeeecCCChhhe
Confidence            379999999999999999999999999988877775432  222 6677799999999999998   9999999999999


Q ss_pred             EE-cCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           84 LL-DENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        84 l~-~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+ +..+.++++|||.++.               +|+......|+.+.||||||+++|+|++|..|+..
T Consensus       447 L~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~  515 (612)
T KOG0603|consen  447 LLDGSAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAA  515 (612)
T ss_pred             eecCCCCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCcccc
Confidence            99 6889999999998753               23334556789999999999999999998877764

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=2.4e-26  Score=155.61  Aligned_cols=131  Identities=26%  Similarity=0.305  Sum_probs=112.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+...+.+++++||+++++|.+.+.+.  ..+++.....++.+++.++.|||+  ..+++|+|++|+
T Consensus        58 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~  133 (284)
T cd06620          58 HECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKG--GPIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIKPS  133 (284)
T ss_pred             HHcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCCHH
Confidence            4679999999999999999999999999999999988543  367888999999999999999996  347999999999


Q ss_pred             cEEEcCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||....                +|+.+....++.++|+||+||++|+++++..|+..
T Consensus       134 nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~  204 (284)
T cd06620         134 NILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAF  204 (284)
T ss_pred             HEEECCCCcEEEccCCcccchhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcc
Confidence            99999999999999986532                23334455678899999999999999998888764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=5.1e-26  Score=175.24  Aligned_cols=130  Identities=24%  Similarity=0.371  Sum_probs=108.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||++++|++.+++..++||||+++|+|.+++.     .+++..+..++.|++.|+.|+|.....+++|||+||
T Consensus       737 l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp  811 (968)
T PLN00113        737 MGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR-----NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSP  811 (968)
T ss_pred             HhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh-----cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCH
Confidence            467899999999999999999999999999999999983     367888999999999999999953337899999999


Q ss_pred             CcEEEcCCCccccc--cc----------c-hhhccccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHS--RE----------R-QLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~--~~----------~-~~~~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++..++.  ..          + ..+.+||......++.++|||||||++|||+++..|+.
T Consensus       812 ~Nil~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~  879 (968)
T PLN00113        812 EKIIIDGKDEPHLRLSLPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPAD  879 (968)
T ss_pred             HhEEECCCCceEEEeccccccccCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCC
Confidence            99999987765542  11          1 22345666666788999999999999999999887764

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.93  E-value=4.5e-26  Score=153.92  Aligned_cols=131  Identities=25%  Similarity=0.376  Sum_probs=109.9

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      ++.++|+||+++++++..  +...++++||+++++|.+++.... ..+++.....++.|++.|+.+||+   .+++|+|+
T Consensus        60 l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~---~~i~H~dl  135 (284)
T cd05038          60 LRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGS---QRYIHRDL  135 (284)
T ss_pred             HHhCCCCChheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHh---CCeecCCC
Confidence            356899999999999876  567899999999999999995442 357888999999999999999997   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhccc---------------------cccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRLLG---------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~~---------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +|.||+++.++.++++|||.+....                     +......++.++|+||||+++|+|+++..|+.
T Consensus       136 ~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~  213 (284)
T cd05038         136 AARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQ  213 (284)
T ss_pred             CHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcc
Confidence            9999999999999999998765332                     22233456778999999999999999766654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.93  E-value=3e-26  Score=153.83  Aligned_cols=131  Identities=27%  Similarity=0.322  Sum_probs=108.8

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++++.+  +..+++++||+++++|.+.+....  .++....+.++.|++.++.|||+   .+++|+|+
T Consensus        58 l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~---~~i~H~~l  132 (266)
T cd06651          58 LKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHS---NMIVHRDI  132 (266)
T ss_pred             HHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCC
Confidence            356899999999998875  356889999999999999885433  57788888999999999999997   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++.++++|||.+..                     +|+......++.++|+||+||++|+++++..|+..
T Consensus       133 ~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~  211 (266)
T cd06651         133 KGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAE  211 (266)
T ss_pred             CHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccc
Confidence            99999999999999999986532                     12223334567889999999999999998777754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.93  E-value=4.1e-26  Score=153.40  Aligned_cols=130  Identities=25%  Similarity=0.293  Sum_probs=107.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+++++++.+ ...+++|||+++++|.+++.+.. ..+++..+..++.+++.|+.|+|+   .+++|+|++|
T Consensus        61 l~~~~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~---~~~~H~dl~p  135 (270)
T cd05056          61 MRQFDHPHIVKLIGVITE-NPVWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLES---KRFVHRDIAA  135 (270)
T ss_pred             HHhCCCCchhceeEEEcC-CCcEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccccCh
Confidence            356899999999998865 45789999999999999995543 357889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      .||+++..+.+++.|||.+..                   +|+......++.++|+||||+++|++++ +..|+.
T Consensus       136 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~  210 (270)
T cd05056         136 RNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQ  210 (270)
T ss_pred             heEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999986532                   2222334456788999999999999886 666654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.93  E-value=1.6e-26  Score=153.05  Aligned_cols=125  Identities=19%  Similarity=0.125  Sum_probs=107.2

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      ..||||+++++++.+++..+++|||+++++|.+.+.+.  ..+++.....++.|++.|+.|+|+   .+++|+|++|+||
T Consensus        42 ~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~---~~i~H~dlkp~Ni  116 (237)
T cd05576          42 HCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKF--LNIPEECVKRWAAEMVVALDALHR---EGIVCRDLNPNNI  116 (237)
T ss_pred             cCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHHHE
Confidence            46899999999999999999999999999999988544  357889999999999999999997   8999999999999


Q ss_pred             EEcCCCcccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCC
Q 041845           84 LLDENWVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      +++.++..++.|||...               .+|+......++.++|+||+|+++|+|+++..+
T Consensus       117 l~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~  181 (237)
T cd05576         117 LLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTL  181 (237)
T ss_pred             EEcCCCCEEEecccchhccccccccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcch
Confidence            99999999999998542               233333345677899999999999999987543

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.93  E-value=1.9e-26  Score=166.87  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=103.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC---CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH---KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      |+.++|+||+++++++...+..+++++++. +++..++....   ...........++.|++.|+.|||+   .+++|||
T Consensus       217 l~~l~HpnIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~---~gIiHrD  292 (501)
T PHA03210        217 LGRLNHENILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD---KKLIHRD  292 (501)
T ss_pred             HHhCCCCCcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh---CCeecCC
Confidence            356899999999999999999999999985 47777664321   1122345667899999999999998   8999999


Q ss_pred             CCCCcEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhccccccC
Q 041845           78 VKSTNILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        78 l~~~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      |||+|||++.++.+|++|||.+...                   |+.+....++.++|||||||++|||+++.+
T Consensus       293 LKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~  366 (501)
T PHA03210        293 IKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDF  366 (501)
T ss_pred             CCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999976421                   233344567889999999999999998653

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.93  E-value=3.6e-26  Score=161.46  Aligned_cols=131  Identities=26%  Similarity=0.351  Sum_probs=106.6

Q ss_pred             CCCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-------------------------------------
Q 041845            2 SNLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-------------------------------------   43 (143)
Q Consensus         2 ~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-------------------------------------   43 (143)
                      ..+. ||||+++++++..++..++|+||+++|+|.+++.....                                     
T Consensus        95 ~~l~~H~niv~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (401)
T cd05107          95 SHLGPHLNIVNLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSES  174 (401)
T ss_pred             HhcCCCCCeEEEEEEEccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhcc
Confidence            3465 99999999999999999999999999999998854311                                     


Q ss_pred             -----------------------------------------------------------CCCcHHHHHHHHHHHHHHHhH
Q 041845           44 -----------------------------------------------------------PPLQWMWRLKICIGAARGLHY   64 (143)
Q Consensus        44 -----------------------------------------------------------~~~~~~~~~~~~~~i~~~l~~   64 (143)
                                                                                 ..+.+.....++.|++.|+.|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~  254 (401)
T cd05107         175 DGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEF  254 (401)
T ss_pred             CccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence                                                                       134556678889999999999


Q ss_pred             hhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhh
Q 041845           65 LHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLC  124 (143)
Q Consensus        65 lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~  124 (143)
                      ||+   .+++|+|++|+||+++..+.++++|||.+...                    ++......++.++|+||||+++
T Consensus       255 LH~---~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil  331 (401)
T cd05107         255 LAS---KNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILL  331 (401)
T ss_pred             Hhc---CCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHH
Confidence            997   89999999999999999999999999976421                    1112234567889999999999


Q ss_pred             hcccc-ccCCCC
Q 041845          125 ARPAM-LPMAEN  135 (143)
Q Consensus       125 ~~~~~-~~~~~~  135 (143)
                      |||++ +..|+.
T Consensus       332 ~e~l~~g~~P~~  343 (401)
T cd05107         332 WEIFTLGGTPYP  343 (401)
T ss_pred             HHHHHcCCCCCC
Confidence            99997 555554

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.93  E-value=1.6e-26  Score=174.70  Aligned_cols=136  Identities=18%  Similarity=0.270  Sum_probs=107.3

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCC----CCC
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGT----RNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~----~~~   72 (143)
                      |++++||||++++++|..  ...+++||||+++++|.+.+...  ....+++..++.++.||+.||.|||+..    ..+
T Consensus        66 L~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~  145 (1021)
T PTZ00266         66 MRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGER  145 (1021)
T ss_pred             HHHcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            357899999999998864  35689999999999999988542  2246889999999999999999999722    135


Q ss_pred             eeecCCCCCcEEEcCC-----------------Ccccccccchhhc-----------------cccccC--CCCCCCccc
Q 041845           73 IIHRDVKSTNILLDEN-----------------WVAKHSRERQLRL-----------------LGSRIL--PAKLTEKSD  116 (143)
Q Consensus        73 i~h~~l~~~nil~~~~-----------------~~~k~~~~~~~~~-----------------~~~~~~--~~~~~~~~D  116 (143)
                      |+|+||+|+|||++..                 +.++++|||++..                 +|+.+.  ...++.++|
T Consensus       146 IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSD  225 (1021)
T PTZ00266        146 VLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSD  225 (1021)
T ss_pred             ceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhH
Confidence            9999999999999642                 3478999986542                 222222  234678999


Q ss_pred             chhhhhhhhccccccCCCCc
Q 041845          117 VYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       117 i~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||||||++|+|+++..|+..
T Consensus       226 VWSLG~ILYELLTGk~PF~~  245 (1021)
T PTZ00266        226 MWALGCIIYELCSGKTPFHK  245 (1021)
T ss_pred             HHHHHHHHHHHHHCCCCCCc
Confidence            99999999999998888754

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.93  E-value=5.9e-26  Score=153.83  Aligned_cols=132  Identities=25%  Similarity=0.366  Sum_probs=112.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++++.+...+..++++||+++++|.+++.... ..+++.....++.|++.++.+||+   .+++|+|++|
T Consensus        69 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~---~gi~H~dl~p  144 (286)
T cd06614          69 MKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHS---QNVIHRDIKS  144 (286)
T ss_pred             HHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCh
Confidence            356799999999999999999999999999999999996543 367888999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+++.|||...                  ..|+......++.++|+||||+++|+++++..|+..
T Consensus       145 ~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~  218 (286)
T cd06614         145 DNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLR  218 (286)
T ss_pred             hhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999997543                  123333445578899999999999999998777654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.93  E-value=2.2e-26  Score=159.66  Aligned_cols=129  Identities=22%  Similarity=0.283  Sum_probs=105.7

Q ss_pred             CCCCCCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      |+.++||||+++++++...      ...+++++++ +++|.+.+..   ..+++..+..++.|++.|+.|||+   .+++
T Consensus        68 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~~iv  140 (343)
T cd07878          68 LKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIHS---AGII  140 (343)
T ss_pred             HHhcCCCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCee
Confidence            4578999999999988643      3468899988 6699887742   368889999999999999999998   8999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhc---------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRL---------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||||+|+||+++.++.+|++|||.+..               +|+.+.. ..++.++|+||+||++|+|+++..|+..
T Consensus       141 Hrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  218 (343)
T cd07878         141 HRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPG  218 (343)
T ss_pred             cccCChhhEEECCCCCEEEcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence            999999999999999999999987542               2222222 3567899999999999999998777654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.93  E-value=6.8e-27  Score=151.11  Aligned_cols=131  Identities=21%  Similarity=0.195  Sum_probs=111.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++.+...+....|+|+|++++++|..-+..+  ..+++..+..+++|++.|+.|+|+   ++|+|||+||+
T Consensus        65 ~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV~R--~~ySEa~aSH~~rQiLeal~yCH~---n~IvHRDvkP~  139 (355)
T KOG0033|consen   65 RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILEALAYCHS---NGIVHRDLKPE  139 (355)
T ss_pred             HhcCCCcEeehhhhhcccceeEEEEecccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh---cCceeccCChh
Confidence            4689999999999999999999999999999997766443  345677788899999999999998   99999999999


Q ss_pred             cEEEcCC---Ccccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDEN---WVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~---~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |+++-++   .-+|+.+||.+.                 +.|+.....+|+..+|||+.|+++|-++.|..||-.+
T Consensus       140 nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~  215 (355)
T KOG0033|consen  140 NLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  215 (355)
T ss_pred             heeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCc
Confidence            9999654   457888988652                 3445566778999999999999999999988887764

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.93  E-value=3e-26  Score=154.95  Aligned_cols=129  Identities=27%  Similarity=0.385  Sum_probs=107.7

Q ss_pred             CCCCcceeeEEeec------CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            5 RHRHLVSLIGHHVE------NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         5 ~h~niv~~~~~~~~------~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +|+|++++++++..      .+..+++|||+++++|.+++.......+++.+...++.|++.|+.|||+   .+++|+|+
T Consensus        71 ~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~ivH~dl  147 (282)
T cd06636          71 HHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHA---HKVIHRDI  147 (282)
T ss_pred             CCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCC
Confidence            69999999999853      3568999999999999999866555567888889999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc------------------cccccC-----CCCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRL------------------LGSRIL-----PAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +|+||+++.++.+++.|||....                  +|+.+.     ...++.++|+||+||++|+|+++..|+.
T Consensus       148 ~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~  227 (282)
T cd06636         148 KGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLC  227 (282)
T ss_pred             CHHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCcc
Confidence            99999999999999999987532                  122221     2346778999999999999999887775


Q ss_pred             c
Q 041845          136 E  136 (143)
Q Consensus       136 ~  136 (143)
                      .
T Consensus       228 ~  228 (282)
T cd06636         228 D  228 (282)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.93  E-value=9.6e-27  Score=160.86  Aligned_cols=134  Identities=23%  Similarity=0.235  Sum_probs=120.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++.+.||.+--.|++++.+|+|+..|.+|+|.-.+.+.....+++..+..++.+|+.++.+||.   .+|+.||+||
T Consensus       239 L~kV~s~FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~---~~iVYRDLKP  315 (591)
T KOG0986|consen  239 LEKVSSPFIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHR---RRIVYRDLKP  315 (591)
T ss_pred             HHHhccCcEEEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHh---cceeeccCCh
Confidence            3567889999998889999999999999999999988877777789999999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||+++.|.++++|.|++.                 ++|+.+..+.|+..+|+||+||++|||+-+..||...
T Consensus       316 eNILLDd~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~  389 (591)
T KOG0986|consen  316 ENILLDDHGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQR  389 (591)
T ss_pred             hheeeccCCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhh
Confidence            99999999999999998763                 4566677788999999999999999999998888643

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.93  E-value=6e-26  Score=152.01  Aligned_cols=133  Identities=26%  Similarity=0.306  Sum_probs=112.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |+.++|+|++++++.+..++..++++|++++++|.+.+..... ..+++.....++.|++.|+.+||+   .+++|+|++
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~---~~i~h~~l~  129 (267)
T cd06610          53 MSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS---NGQIHRDIK  129 (267)
T ss_pred             HHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCC
Confidence            3568999999999999999999999999999999999865432 467888999999999999999997   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc----------------------ccccCCC-CCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL----------------------GSRILPA-KLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~-~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||++++++..++.|||.....                      |+..... .++.++|+||||+++|+|+++..|+..
T Consensus       130 p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~  209 (267)
T cd06610         130 AGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSK  209 (267)
T ss_pred             HHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccc
Confidence            99999999999999999864311                      2222222 567889999999999999999888754

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.93  E-value=1.3e-25  Score=153.70  Aligned_cols=130  Identities=32%  Similarity=0.408  Sum_probs=108.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|||++++.+++.+++..++++||++ +++.+.+... ...+++..+..++.|++.++.|||+   .+++|+|++|+
T Consensus        70 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~-~~~l~~~~~~~~~~ql~~~L~~LH~---~~i~H~dl~p~  144 (307)
T cd06607          70 QQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDILEVH-KKPLQEVEIAAICHGALQGLAYLHS---HERIHRDIKAG  144 (307)
T ss_pred             HhCCCCCEEEEEEEEEeCCeEEEEHHhhC-CCHHHHHHHc-ccCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcc
Confidence            56899999999999999999999999997 5777766432 2367888999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------cccc---CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------GSRI---LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------~~~~---~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.....              |+..   ....++.++|+||||+++|+++++..|+..
T Consensus       145 nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~  216 (307)
T cd06607         145 NILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  216 (307)
T ss_pred             cEEECCCCCEEEeecCcceecCCCCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999866422              2222   124567899999999999999998776543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.93  E-value=6.5e-26  Score=154.34  Aligned_cols=130  Identities=24%  Similarity=0.306  Sum_probs=108.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++|+||+++++++.+.+..++||||+ +++|.+++.... ..+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        56 l~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p  130 (298)
T cd07841          56 LQELKHPNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKP  130 (298)
T ss_pred             HhhcCCCCChhhhheeecCCEEEEEEccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeecCCCh
Confidence            35688999999999999999999999999 889999985433 367889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc------------------ccc-CCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLLG------------------SRI-LPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~------------------~~~-~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++.++++|||.+....                  +.+ ....++.++|+||+||++|+|+++..++.
T Consensus       131 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~  204 (298)
T cd07841         131 NNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLP  204 (298)
T ss_pred             hhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCcccc
Confidence            99999999999999998664321                  111 12345788999999999999999854443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.93  E-value=2.6e-26  Score=155.30  Aligned_cols=132  Identities=18%  Similarity=0.281  Sum_probs=110.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..+++|||+. ++|...+.......+++.....++.|++.|+.|||+   .+++|+|++|
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~---~~i~H~~l~p  128 (284)
T cd07860          53 LKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKP  128 (284)
T ss_pred             HHhcCCCCCcchhhhcccCCcEEEEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            357899999999999999999999999996 588888865555678889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                  |+.... ..++.++|+||||+++|+|+|+..|+..
T Consensus       129 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~  203 (284)
T cd07860         129 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPG  203 (284)
T ss_pred             HHEEECCCCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            9999999999999999865321                  221222 2246789999999999999998776643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.93  E-value=5.5e-26  Score=151.61  Aligned_cols=132  Identities=31%  Similarity=0.422  Sum_probs=111.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||++++++++......++++||+++++|.+.+... ...+++.....++.+++.++.+||+   .+++|+|++|
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~dl~p  128 (256)
T cd05112          53 MMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQ-RGKFSQETLLGMCLDVCEGMAYLES---SNVIHRDLAA  128 (256)
T ss_pred             HHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHHH---CCcccccccc
Confidence            35789999999999999888999999999999999988543 2357788889999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      .||+++.++.+++.|||....                   +|+......++.++|+||+|+++|++++ +..|+..
T Consensus       129 ~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~  204 (256)
T cd05112         129 RNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYEN  204 (256)
T ss_pred             ceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            999999999999999986532                   2333334567788999999999999987 6666653

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.93  E-value=4.7e-26  Score=143.86  Aligned_cols=131  Identities=22%  Similarity=0.280  Sum_probs=108.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +....|.+|+++|........|+.||.+.- ||..+-++  ..+...++...-+++..++.|+.|||+  +..++|||+|
T Consensus       100 r~~~CPf~V~FyGa~~regdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvK  176 (282)
T KOG0984|consen  100 RTVDCPFTVHFYGALFREGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVK  176 (282)
T ss_pred             cCCCCCeEEEeehhhhccccEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCC
Confidence            456789999999999899999999999964 87776532  234577888889999999999999998  6789999999


Q ss_pred             CCcEEEcCCCcccccccchhhc-----------------ccccc----CCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLRL-----------------LGSRI----LPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |.|||++..|.+|++|||...+                 +|+.+    .+..|+.++||||+|+.+.||+++.+|.+
T Consensus       177 PsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~  253 (282)
T KOG0984|consen  177 PSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYE  253 (282)
T ss_pred             cceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccc
Confidence            9999999999999999997642                 22222    23478899999999999999999776654

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=4.8e-26  Score=152.70  Aligned_cols=132  Identities=26%  Similarity=0.294  Sum_probs=109.3

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      ++.++|+||+++++++.+.  ..+++++||+++++|.+.+.+..  .+++.....++.|++.|+.|||+   .+++|+|+
T Consensus        58 l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~LH~---~~i~H~dl  132 (264)
T cd06653          58 LKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHS---NMIVHRDI  132 (264)
T ss_pred             HHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEecCCC
Confidence            3568999999999998754  45789999999999999885433  57788889999999999999997   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|+||+++.++..++.|||....                     +|+......++.++|+|||||++|+++++..|+...
T Consensus       133 ~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  212 (264)
T cd06653         133 KGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY  212 (264)
T ss_pred             CHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence            99999999999999999986532                     122233345678899999999999999988777543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.93  E-value=1.2e-26  Score=156.93  Aligned_cols=128  Identities=20%  Similarity=0.284  Sum_probs=107.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|+||+++++++.+....++++||++ +++.+.+.+. ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        54 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl~~~  128 (284)
T cd07839          54 KELKHKNIVRLYDVLHSDKKLTLVFEYCD-QDLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCHS---HNVLHRDLKPQ  128 (284)
T ss_pred             HhcCCCCeeeHHHHhccCCceEEEEecCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHH
Confidence            56899999999999999999999999997 4888877443 3468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ||+++.++.++++|||.+...                  |+.... ..++.++|+||+||++|+|+++..|+
T Consensus       129 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~  200 (284)
T cd07839         129 NLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  200 (284)
T ss_pred             HEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999865421                  221222 23578899999999999999976553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.93  E-value=1.5e-26  Score=154.55  Aligned_cols=132  Identities=27%  Similarity=0.244  Sum_probs=113.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++++||||+++++.+.++...++++||+++++|...+...  ..++......++.|++.++.|||+   .+++|+|++|
T Consensus        54 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~---~~i~h~dl~~  128 (258)
T cd05578          54 LQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHS---KGIIHRDIKP  128 (258)
T ss_pred             HHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCH
Confidence            35789999999999999999999999999999999998554  467888999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      .||+++.++.+++.|||....                 +|+......++.++|+||+|+++|+++++..|+...
T Consensus       129 ~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  202 (258)
T cd05578         129 DNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGH  202 (258)
T ss_pred             HHeEEcCCCCEEEeecccccccCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCC
Confidence            999999999999999986543                 222233445688999999999999999988776643

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.93  E-value=6.5e-26  Score=151.10  Aligned_cols=131  Identities=34%  Similarity=0.420  Sum_probs=110.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++.+.+.+..+++||++++++|.+.+.......+++.....++.|++.|+.+||+   .+++|+|++|+
T Consensus        56 ~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~---~~~~h~dl~~~  132 (258)
T smart00219       56 RKLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLES---KNFIHRDLAAR  132 (258)
T ss_pred             HhcCCCchheEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhc---CCeeecccccc
Confidence            467999999999999999999999999999999999865443338899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccc-------------------cccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRLLG-------------------SRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      ||+++.++.++++|||......                   +......++.++|+||+|+++++|++ +..|+.
T Consensus       133 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~  206 (258)
T smart00219      133 NCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYP  206 (258)
T ss_pred             eEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999998764222                   11223456788999999999999987 455543

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.93  E-value=5.9e-26  Score=150.88  Aligned_cols=127  Identities=24%  Similarity=0.287  Sum_probs=107.4

Q ss_pred             CCCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      |..++|+||++++.+|.-..      ..|+|||++.. +|...+.    ..++..++.+++.|+++|++++|+   .+|+
T Consensus        69 ~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~~-nl~~vi~----~elDH~tis~i~yq~~~~ik~lhs---~~Ii  140 (369)
T KOG0665|consen   69 MKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMDA-NLCQVIL----MELDHETISYILYQMLCGIKHLHS---AGII  140 (369)
T ss_pred             hhhhcccceeeeeeccCccccHHHHHhHHHHHHhhhh-HHHHHHH----HhcchHHHHHHHHHHHHHHHHHHh---ccee
Confidence            35689999999999986433      58999999965 8988874    356778899999999999999998   9999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||||||+||++..++..|+.|||.++..                 ++...+..+..++||||+||+++||.++.--++
T Consensus       141 hRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~  218 (369)
T KOG0665|consen  141 HRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFP  218 (369)
T ss_pred             ecccCcccceecchhheeeccchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEec
Confidence            9999999999999999999999987633                 333455568899999999999999998765554

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=4.7e-26  Score=154.46  Aligned_cols=134  Identities=22%  Similarity=0.237  Sum_probs=110.8

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      |+.++||||+++++++..  .+.++++|||+++++|.+++..  .....++......++.|++.++.|+|+   .+++|+
T Consensus        53 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~---~~i~H~  129 (287)
T cd06621          53 NKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHS---RKIIHR  129 (287)
T ss_pred             HHhCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccC
Confidence            357899999999998864  3468999999999999887642  223457788889999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |++|.||+++.++.++++|||.+..                +|+......++.++|+||+|+++|+|+++..|+...
T Consensus       130 dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (287)
T cd06621         130 DIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPE  206 (287)
T ss_pred             CCCHHHEEEecCCeEEEeeccccccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            9999999999999999999987532                223334456788999999999999999998887654

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.8e-26  Score=162.71  Aligned_cols=130  Identities=17%  Similarity=0.124  Sum_probs=110.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .+-+++.||+++-.|.+++++|+||+|+++|++.+.+.+.  +-|++..+..++..+.+|+.++|.   .|++||||||.
T Consensus       684 AEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLIrm--gIFeE~LARFYIAEltcAiesVHk---mGFIHRDiKPD  758 (1034)
T KOG0608|consen  684 AEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--GIFEEDLARFYIAELTCAIESVHK---MGFIHRDIKPD  758 (1034)
T ss_pred             hhcCCcceEEEEEEeccCCceEEEEeccCCccHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHh---ccceecccCcc
Confidence            3457789999999999999999999999999999988543  478899999999999999999996   99999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------------------------------------------------
Q 041845           82 NILLDENWVAKHSRERQLRL------------------------------------------------------------  101 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------------------------------------------------  101 (143)
                      |||++.+|.+|++|||+++.                                                            
T Consensus       759 NILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyi  838 (1034)
T KOG0608|consen  759 NILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYI  838 (1034)
T ss_pred             ceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCccc
Confidence            99999999999999998751                                                            


Q ss_pred             cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845          102 LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       102 ~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +++.+....++...|+||.||+||||+.|..||-.
T Consensus       839 apevl~r~g~~q~cdwws~gvil~em~~g~~pf~~  873 (1034)
T KOG0608|consen  839 APEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLA  873 (1034)
T ss_pred             ChHHhcccCccccchhhHhhHHHHHHhhCCCCccC
Confidence            11112233567778999999999999998777653

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.93  E-value=8.2e-26  Score=153.25  Aligned_cols=128  Identities=20%  Similarity=0.289  Sum_probs=109.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+..++..++++||+++++|.+.+..   ..++......++.|++.++.++|+   .+++|+|++|+
T Consensus        71 ~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~---~~i~H~dl~p~  144 (285)
T cd06648          71 RDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHA---QGVIHRDIKSD  144 (285)
T ss_pred             HHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChh
Confidence            467899999999999999999999999999999998854   357788889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+++.++.++++|||....                  +|+......++.++|+||+|+++|+++++..|+.
T Consensus       145 Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~  216 (285)
T cd06648         145 SILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYF  216 (285)
T ss_pred             hEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCc
Confidence            99999999999999986432                  1222333457788999999999999999877654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.93  E-value=1.1e-25  Score=152.13  Aligned_cols=130  Identities=24%  Similarity=0.303  Sum_probs=107.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-CeeecCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRN-TIIHRDV   78 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-~i~h~~l   78 (143)
                      +..+||||+++++.+..++..++++||++ ++|.+++...  ....+++..+..++.|++.|+.|||+   + +++|+|+
T Consensus        55 ~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~~i~h~dl  130 (283)
T cd06617          55 RSVDCPYTVTFYGALFREGDVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHS---KLSVIHRDV  130 (283)
T ss_pred             HHcCCCCeeeeeEEEecCCcEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCC
Confidence            35689999999999999999999999997 5887776432  23467899999999999999999997   5 8999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc-----------------ccccCC----CCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL-----------------GSRILP----AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~----~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +|+||+++.++.++++|||.+...                 |+....    ..++.++|+||+||++|+|+++..|+.
T Consensus       131 kp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  208 (283)
T cd06617         131 KPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYD  208 (283)
T ss_pred             CHHHEEECCCCCEEEeecccccccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCC
Confidence            999999999999999999875421                 221111    345778999999999999999887775

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.93  E-value=5.3e-26  Score=151.60  Aligned_cols=132  Identities=23%  Similarity=0.283  Sum_probs=111.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++.+.+....++++||+++++|.+++.+.  ..+++.....++.|++.++.+||+   .+++|+|++|
T Consensus        56 l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~~  130 (258)
T cd06632          56 LSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKY--GSFPEPVIRLYTRQILLGLEYLHD---RNTVHRDIKG  130 (258)
T ss_pred             HHhcCCCCchheeeeEecCCeEEEEEEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCH
Confidence            35679999999999999999999999999999999998543  357788889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-----------------ccccCCCC-CCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-----------------GSRILPAK-LTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~-~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+++.|||.....                 |+...... ++.++|+||+|+++|+++++..|+...
T Consensus       131 ~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~  205 (258)
T cd06632         131 ANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQL  205 (258)
T ss_pred             HHEEECCCCCEEEccCccceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccC
Confidence            9999999999999999865421                 22222233 678899999999999999988777543

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.93  E-value=1.4e-25  Score=151.73  Aligned_cols=131  Identities=22%  Similarity=0.289  Sum_probs=109.5

Q ss_pred             CCCCCCCcceeeEEeecCCc-----hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVENKE-----MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~-----~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++|+|++++++++.....     .++++|++.+ ++.+++.......+++..+..++.|++.|+.+||+   .+++|+
T Consensus        56 ~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~---~~i~h~  131 (287)
T cd07838          56 ESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHS---HRIVHR  131 (287)
T ss_pred             hccCCCCcceEEEEEeeccCCCCceeEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeec
Confidence            35679999999999987766     8999999975 89888865444468899999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |++|.||+++.++.++++|||.+..                 +|+......++.++|+||+||++|+|+++..++..
T Consensus       132 ~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~  208 (287)
T cd07838         132 DLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRG  208 (287)
T ss_pred             cCChhhEEEccCCCEEEeccCcceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccC
Confidence            9999999999999999999986532                 22333445667899999999999999998766553

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.92  E-value=1.1e-25  Score=152.01  Aligned_cols=129  Identities=23%  Similarity=0.299  Sum_probs=110.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+..+...++++||+++++|.+.+..   ..+++.....++.+++.++.+||+   .+++|+|++|.
T Consensus        57 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~dl~p~  130 (277)
T cd06641          57 SQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHS---EKKIHRDIKAA  130 (277)
T ss_pred             HhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHcc---CCeecCCCCHH
Confidence            568999999999999999999999999999999988843   357788889999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+++.|||.+..                  +|+......++.++|+||+||++|+++++..|+..
T Consensus       131 Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  203 (277)
T cd06641         131 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSE  203 (277)
T ss_pred             hEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCc
Confidence            99999999999999986532                  22223334567789999999999999998888764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.92  E-value=1.5e-26  Score=154.40  Aligned_cols=131  Identities=30%  Similarity=0.384  Sum_probs=113.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.++...+++||++++++|.+++..  ...++...+..++.|++.|+.+||+   .+++|+||+|+
T Consensus        53 ~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~L~~Lh~---~~i~H~dikp~  127 (260)
T PF00069_consen   53 RRLRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQK--NKPLSEEEILKIAYQILEALAYLHS---KGIVHRDIKPE  127 (260)
T ss_dssp             HHHTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHHH--HSSBBHHHHHHHHHHHHHHHHHHHH---TTEEESSBSGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc---ccccccccccc
Confidence            356899999999999999999999999998899999962  3477899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+..                  +|+... ....+.++|+||+|+++|+|+++..|+...
T Consensus       128 NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~  202 (260)
T PF00069_consen  128 NILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES  202 (260)
T ss_dssp             GEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999997641                  122223 456788999999999999999988777654

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.92  E-value=1.2e-25  Score=152.58  Aligned_cols=130  Identities=21%  Similarity=0.227  Sum_probs=106.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++..+...++++||+. +++.+.+... ...+.+.....++.|++.|+.|||+   .+++|+||+|
T Consensus        57 l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~---~~i~H~dlkp  131 (291)
T cd07870          57 LKGLKHANIVLLHDIIHTKETLTFVFEYMH-TDLAQYMIQH-PGGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDLKP  131 (291)
T ss_pred             HHhcCCCCEeEEEEEEecCCeEEEEEeccc-CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCh
Confidence            356899999999999999999999999996 5777766433 2356677788899999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++.++++|||.+..                  +|+.... ..++.++|+||+|+++|+++++..|+.
T Consensus       132 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~  205 (291)
T cd07870         132 QNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFP  205 (291)
T ss_pred             HHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999996542                  1222221 235678999999999999999877765

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=3.2e-26  Score=171.42  Aligned_cols=129  Identities=21%  Similarity=0.201  Sum_probs=110.6

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +.+.|+.++-.|.+.+++|+||||++||+|...+.+..  .+++.++..|...|+.|+..+|+   .|++|||+||.|+|
T Consensus       133 ns~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~---mgyVHRDiKPDNvL  207 (1317)
T KOG0612|consen  133 NSEWIVQLHYAFQDERYLYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHS---MGYVHRDIKPDNVL  207 (1317)
T ss_pred             CcHHHHHHHHHhcCccceEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHh---ccceeccCCcceeE
Confidence            35678888888999999999999999999999996544  78999999999999999999997   99999999999999


Q ss_pred             EcCCCcccccccchhhccc-------------------ccc----C-CCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           85 LDENWVAKHSRERQLRLLG-------------------SRI----L-PAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~~-------------------~~~----~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      ++..|.+|+.|||.+--+.                   +.+    . .+.|.+..|+||+||++|||++|..||-.+.
T Consensus       208 ld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYads  285 (1317)
T KOG0612|consen  208 LDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADS  285 (1317)
T ss_pred             ecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHH
Confidence            9999999999999763211                   111    1 2568889999999999999999988886543

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.92  E-value=1.7e-25  Score=152.11  Aligned_cols=131  Identities=21%  Similarity=0.281  Sum_probs=107.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++++|+||+++++++.+++..++||||++ +++.+.+.......+++.....++.|++.|+.|||+   ++++|+|++|
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H~dl~p  130 (294)
T PLN00009         55 LKEMQHGNIVRLQDVVHSEKRLYLVFEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHS---HRVLHRDLKP  130 (294)
T ss_pred             HHhccCCCEeeEEEEEecCCeEEEEEeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCc
Confidence            356899999999999999999999999996 588887755544456788888999999999999998   8999999999


Q ss_pred             CcEEEcC-CCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDE-NWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~-~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++. ++.+|++|||.+...                  |+.... ..++.++|+||+|+++|+|+++..|+.
T Consensus       131 ~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~  205 (294)
T PLN00009        131 QNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFP  205 (294)
T ss_pred             ceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999985 457899999866421                  111222 346788999999999999999877764

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.92  E-value=1e-25  Score=151.31  Aligned_cols=131  Identities=27%  Similarity=0.326  Sum_probs=107.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCC--cHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPL--QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++|+||+++++++..++..++++||+++++|.+.+.... ..+  +...+..++.|++.|+.|||+   .+++|+|++
T Consensus        60 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~h~dl~  135 (268)
T cd06624          60 SYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIK  135 (268)
T ss_pred             HhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHH---CCEeecCCC
Confidence            56899999999999999999999999999999999986432 233  678888899999999999997   899999999


Q ss_pred             CCcEEEcC-CCcccccccchhhcc------------------ccccCC--CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDE-NWVAKHSRERQLRLL------------------GSRILP--AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~-~~~~k~~~~~~~~~~------------------~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||+++. .+.+++.|||.....                  |+....  ..++.++|+||+|+++|+++++..|+.+
T Consensus       136 p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~  213 (268)
T cd06624         136 GDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIE  213 (268)
T ss_pred             HHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCcc
Confidence            99999975 678999999865321                  121211  2367889999999999999998777653

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.92  E-value=4.5e-26  Score=152.28  Aligned_cols=130  Identities=25%  Similarity=0.214  Sum_probs=110.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++.+.+++..++++||+++++|.+++.+..  .+++..+..++.|++.++.+||+   .+++|+|++|+
T Consensus        48 ~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~di~~~  122 (265)
T cd05579          48 SQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHS---NGIIHRDLKPD  122 (265)
T ss_pred             HhCCCcchhHHHHheecCcEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCCCHH
Confidence            46789999999999999999999999999999999885533  67889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------------------ccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+++.++.++++|||.....                          |+.......+.++|+||||+++|+++++..|+.
T Consensus       123 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~  202 (265)
T cd05579         123 NILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFH  202 (265)
T ss_pred             HeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence            999999999999999865422                          111223345678999999999999999877765


Q ss_pred             c
Q 041845          136 E  136 (143)
Q Consensus       136 ~  136 (143)
                      .
T Consensus       203 ~  203 (265)
T cd05579         203 G  203 (265)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=3.2e-26  Score=164.35  Aligned_cols=133  Identities=20%  Similarity=0.242  Sum_probs=114.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |...+||+||++++.|...+.+||..|||.||.+..++... +..+.+.++..+++|++.|+.|||+   +.|+|||||.
T Consensus        83 La~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL-~r~LtE~QIqvvc~q~ldALn~LHs---~~iIHRDLKA  158 (1187)
T KOG0579|consen   83 LAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLEL-GRVLTEDQIQVVCYQVLDALNWLHS---QNIIHRDLKA  158 (1187)
T ss_pred             hhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHHh-ccccchHHHHHHHHHHHHHHHHHhh---cchhhhhccc
Confidence            45678999999999999999999999999999998888654 4588999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh-----------------c-ccc-----ccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR-----------------L-LGS-----RILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~-----------------~-~~~-----~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      .|||++-+|.+++.|||...                 + +|+     -+...+|+.++||||||+++.||+-...|-.+.
T Consensus       159 GNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhel  238 (1187)
T KOG0579|consen  159 GNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHEL  238 (1187)
T ss_pred             cceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcccc
Confidence            99999999999999999753                 1 122     244568999999999999999999866655443

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.92  E-value=3.7e-26  Score=147.39  Aligned_cols=136  Identities=21%  Similarity=0.263  Sum_probs=110.4

Q ss_pred             CCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            2 SNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      +.++|||++++++....+     ...|+++.|...|+|.+.+...  .+..+++.+.+.++.+++.|+.++|+.. .++.
T Consensus        73 rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~-~~yA  151 (302)
T KOG2345|consen   73 RKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKE-PPYA  151 (302)
T ss_pred             HhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccC-Cccc
Confidence            467899999998877533     3589999999999999988543  3456789999999999999999999833 2599


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhccccc---------------------------c---CCCCCCCcccchhhhhhh
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRLLGSR---------------------------I---LPAKLTEKSDVYSFGVLC  124 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~~~~~---------------------------~---~~~~~~~~~Di~s~G~~~  124 (143)
                      |+|+||.||++++.+.+++.|||..+-++-.                           +   .....+.++|||||||++
T Consensus       152 H~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtL  231 (302)
T KOG2345|consen  152 HRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTL  231 (302)
T ss_pred             ccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHH
Confidence            9999999999999999999999976533211                           1   122457899999999999


Q ss_pred             hccccccCCCCccc
Q 041845          125 ARPAMLPMAENEQE  138 (143)
Q Consensus       125 ~~~~~~~~~~~~~~  138 (143)
                      |+|+++.-|++...
T Consensus       232 Ya~mf~~sPfe~~~  245 (302)
T KOG2345|consen  232 YAMMFGESPFERIY  245 (302)
T ss_pred             HHHHHcCCcchHHh
Confidence            99999888887543

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.92  E-value=2.2e-25  Score=150.79  Aligned_cols=129  Identities=22%  Similarity=0.286  Sum_probs=108.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++..++..++|+||+ +++|.+.+.... ..+++..+..++.|++.++.|||+   .+++|+|++|+
T Consensus        54 ~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~  128 (286)
T cd07832          54 QACQHPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHA---NGIMHRDLKPA  128 (286)
T ss_pred             HhCCCCCCcceeeEEecCCeeEEEeccc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCHH
Confidence            5678999999999999999999999999 899999885433 568889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccC-CCCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+++.++.+++.|||.+...                   |+... ...++.++|+||+|+++++|+++..++.
T Consensus       129 ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~  202 (286)
T cd07832         129 NLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFP  202 (286)
T ss_pred             HEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcC
Confidence            999999999999999865432                   11111 2235788999999999999999865553

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.92  E-value=8.1e-26  Score=150.71  Aligned_cols=132  Identities=23%  Similarity=0.315  Sum_probs=110.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+.+.+..++++||+++++|.+.+.......+++.....++.|++.|+.|||+   .+++|+|++|.
T Consensus        54 ~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~---~~i~H~dl~~~  130 (257)
T cd08225          54 AKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD---RKILHRDIKSQ  130 (257)
T ss_pred             HhCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCHH
Confidence            567899999999999999999999999999999999866555567889999999999999999997   89999999999


Q ss_pred             cEEEcCCC-cccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENW-VAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~-~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++ ..+++|||.+...                  |+......++.++|+||||+++|+++++..|+..
T Consensus       131 nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  204 (257)
T cd08225         131 NIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEG  204 (257)
T ss_pred             HEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99998775 4588998765321                  2223334567889999999999999998777653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.3e-25  Score=150.94  Aligned_cols=131  Identities=27%  Similarity=0.348  Sum_probs=107.4

Q ss_pred             CC-CCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCC--CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            3 NL-RHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      .+ +|+||+++++++....      ..+++|||+++++|.+.+....  +..+++..+..++.|++.|+.|||+   .++
T Consensus        58 ~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~---~~i  134 (275)
T cd06608          58 KYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHE---NKV  134 (275)
T ss_pred             HhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc---CCc
Confidence            45 6999999999997644      4899999999999998875432  4577889999999999999999998   899


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhhc------------------cccccC-----CCCCCCcccchhhhhhhhccccc
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLRL------------------LGSRIL-----PAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      +|+|++|.||+++.++.+++.|||.+..                  +|+.+.     ...++.++|+||+|+++|+++++
T Consensus       135 ~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g  214 (275)
T cd06608         135 IHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADG  214 (275)
T ss_pred             ccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhC
Confidence            9999999999999999999999986532                  122111     22456789999999999999998


Q ss_pred             cCCCCc
Q 041845          131 PMAENE  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      ..|+..
T Consensus       215 ~~p~~~  220 (275)
T cd06608         215 KPPLCD  220 (275)
T ss_pred             CCCccc
Confidence            877753

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.92  E-value=7.2e-26  Score=165.65  Aligned_cols=124  Identities=28%  Similarity=0.401  Sum_probs=109.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |.+++|||+++++++|..+. +.||++|++.|+|.++++.+ +..+.....+.|..||+.|+.|||.   ++++||||.+
T Consensus       752 masldHpnl~RLLgvc~~s~-~qlvtq~mP~G~LlDyvr~h-r~~igsq~lLnw~~QIAkgM~YLe~---qrlVHrdLaa  826 (1177)
T KOG1025|consen  752 MASLDHPNLLRLLGVCMLST-LQLVTQLMPLGCLLDYVREH-RDNIGSQDLLNWCYQIAKGMKYLEE---QRLVHRDLAA  826 (1177)
T ss_pred             HhcCCCchHHHHhhhcccch-HHHHHHhcccchHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHh---cchhhhhhhh
Confidence            56899999999999998765 88999999999999999654 4577778889999999999999997   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc--------------------cCCCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR--------------------ILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~--------------------~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +|+|+.+...+|+.|||.+.+.+..                    +....++.++|||||||++||++|
T Consensus       827 RNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmT  895 (1177)
T KOG1025|consen  827 RNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMT  895 (1177)
T ss_pred             hheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHh
Confidence            9999999999999999988754433                    223468899999999999999888

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.92  E-value=1e-25  Score=150.96  Aligned_cols=133  Identities=25%  Similarity=0.314  Sum_probs=113.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++.+..++..++++||+++++|.+++.... ..++......++.|++.++.++|+  ..+++|+|++|.
T Consensus        54 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~--~~~i~H~dl~~~  130 (265)
T cd06605          54 HKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHE--KHKIIHRDVKPS  130 (265)
T ss_pred             HHCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcC--CCCeecCCCCHH
Confidence            46789999999999999999999999999899999986442 577888889999999999999995  378999999999


Q ss_pred             cEEEcCCCcccccccchhh----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLR----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+++.|||...                .+|+......++.++|+||+|+++|+++++..|+...
T Consensus       131 ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  202 (265)
T cd06605         131 NILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPE  202 (265)
T ss_pred             HEEECCCCCEEEeecccchhhHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence            9999999999999998653                2233344556788999999999999999987776543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.92  E-value=2.6e-25  Score=149.41  Aligned_cols=132  Identities=23%  Similarity=0.334  Sum_probs=110.5

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      .++||||+++++.+.+++..++++||+++++|.+.+..  .....+++...+.++.|++.++.+||+  ..+++|+|++|
T Consensus        65 ~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~  142 (269)
T cd08528          65 QLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLTP  142 (269)
T ss_pred             cCCCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCCH
Confidence            47899999999999999999999999999999988743  233467888899999999999999995  35799999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .||+++.++.++++|||.+...                 |+......++.++|+||||+++|+++++..|+..
T Consensus       143 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~  215 (269)
T cd08528         143 NNIMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYS  215 (269)
T ss_pred             HHEEECCCCcEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccc
Confidence            9999999999999999976432                 2223334567889999999999999998777654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.92  E-value=1.5e-25  Score=152.52  Aligned_cols=128  Identities=20%  Similarity=0.271  Sum_probs=108.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+..++..+++|||+++++|.+.+..   ..+++.....++.|++.++.|||+   .+++|+|++|+
T Consensus        72 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~---~givH~dl~p~  145 (292)
T cd06657          72 RDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHA---QGVIHRDIKSD  145 (292)
T ss_pred             HhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHH
Confidence            567899999999999999999999999999999987743   256788889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+++.++..++.|||....                  +++......++.++|+||+|+++|+++++..|+.
T Consensus       146 Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~  217 (292)
T cd06657         146 SILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYF  217 (292)
T ss_pred             HEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999986432                  2222233456788999999999999999877664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.92  E-value=2.3e-25  Score=151.40  Aligned_cols=130  Identities=20%  Similarity=0.245  Sum_probs=107.4

Q ss_pred             CCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      ++++||||+++++++..+  +..++++||+++ +|.+.+.... ..+++.....++.|++.|+.|||+   .+++|+|++
T Consensus        59 ~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~dl~  133 (293)
T cd07843          59 LKLQHPNIVTVKEVVVGSNLDKIYMVMEYVEH-DLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHD---NWILHRDLK  133 (293)
T ss_pred             HhcCCCCEEEEEEEEEecCCCcEEEEehhcCc-CHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCC
Confidence            467899999999998877  889999999974 8988885433 367899999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||+++.++.++++|||.....                  |+.... ..++.++|+||+|+++|+|+++..++..
T Consensus       134 p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~  209 (293)
T cd07843         134 TSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPG  209 (293)
T ss_pred             HHHEEECCCCcEEEeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999865422                  111222 2347789999999999999998766653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.92  E-value=2.1e-25  Score=154.87  Aligned_cols=131  Identities=26%  Similarity=0.302  Sum_probs=104.8

Q ss_pred             CCC-CCCCcceeeEEeecC-CchhhhHhhhcCCCHHHHhhcCCC------------------------------------
Q 041845            2 SNL-RHRHLVSLIGHHVEN-KEMILVYDCMARGTLRDHLYNNHK------------------------------------   43 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~~~------------------------------------   43 (143)
                      +.+ +|+||+++++++... ...+++|||+++|+|.+++.....                                    
T Consensus        65 ~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (343)
T cd05103          65 IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSS  144 (343)
T ss_pred             HhccCCccHhhhcceeecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccc
Confidence            345 689999999988654 567899999999999998854211                                    


Q ss_pred             -----------------------------CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCccccc
Q 041845           44 -----------------------------PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS   94 (143)
Q Consensus        44 -----------------------------~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~   94 (143)
                                                   ..+++.....++.|++.|+.|||+   .+++|+|++|.||+++.++.++++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~i~H~dikp~Nil~~~~~~~kl~  221 (343)
T cd05103         145 QSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSENNVVKIC  221 (343)
T ss_pred             cccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCccCeEEEcCCCcEEEE
Confidence                                         135667778899999999999998   899999999999999999999999


Q ss_pred             ccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           95 RERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        95 ~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      |||.+..                    +|+......++.++|+||||+++|++++ +..|+.
T Consensus       222 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  283 (343)
T cd05103         222 DFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP  283 (343)
T ss_pred             ecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            9986542                    1222334567889999999999999986 555554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.92  E-value=2e-25  Score=151.13  Aligned_cols=130  Identities=25%  Similarity=0.235  Sum_probs=105.5

Q ss_pred             CC-CCCCcceeeEEee-----cCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            3 NL-RHRHLVSLIGHHV-----ENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~-----~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      .+ +||||+++++++.     .++..+++|||+++++|.+.+...  ....+++..+..++.|++.|+.|||+   .+++
T Consensus        70 ~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~  146 (286)
T cd06638          70 ALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHV---NKTI  146 (286)
T ss_pred             HHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHh---CCcc
Confidence            45 6999999999874     345689999999999999877422  23467788889999999999999997   8999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhcc------------------ccccC-----CCCCCCcccchhhhhhhhcccccc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRLL------------------GSRIL-----PAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      |+|++|+||+++.++.+++.|||.+...                  |+.+.     ...++.++|+||+||++|+|+++.
T Consensus       147 H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~  226 (286)
T cd06638         147 HRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGD  226 (286)
T ss_pred             ccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999875421                  11111     233677899999999999999987


Q ss_pred             CCCC
Q 041845          132 MAEN  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      .|+.
T Consensus       227 ~p~~  230 (286)
T cd06638         227 PPLA  230 (286)
T ss_pred             CCCC
Confidence            7654

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.92  E-value=1.7e-25  Score=151.45  Aligned_cols=130  Identities=24%  Similarity=0.231  Sum_probs=107.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+||+++++++..++..++++||++++.+.....+  ...++...+..++.|++.++.|||+   .+++|+|++|
T Consensus        54 l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~~  128 (288)
T cd07833          54 LRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEAS--PGGLPPDAVRSYIWQLLQAIAYCHS---HNIIHRDIKP  128 (288)
T ss_pred             HHhcCCCCeeehhheEEECCEEEEEEecCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            3568899999999999999999999999988666655533  2357889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCC-CCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPA-KLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~-~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++.++++|||.+...                   |+..... .++.++|+||+|+++|+|+++..++.
T Consensus       129 ~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~  203 (288)
T cd07833         129 ENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFP  203 (288)
T ss_pred             HHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999865422                   2222233 56788999999999999999876665

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.92  E-value=2.6e-25  Score=148.77  Aligned_cols=131  Identities=28%  Similarity=0.331  Sum_probs=110.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++|+||+++++.+.+.+..++++||+++++|.+.+...  ..+++.....++.+++.++.|||+   .+++|+|++|
T Consensus        53 ~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~~  127 (264)
T cd06626          53 LELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHS---HGIVHRDIKP  127 (264)
T ss_pred             HHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHH---CCcccCCCCH
Confidence            35689999999999999999999999999999999998543  346788888999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc----------------------ccccCCCC---CCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL----------------------GSRILPAK---LTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~~---~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      .||+++.++.++++|||.....                      |+......   .+.++|+||||+++|+++++..|+.
T Consensus       128 ~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~  207 (264)
T cd06626         128 ANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWS  207 (264)
T ss_pred             HHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999865422                      11122222   6788999999999999999888875


Q ss_pred             c
Q 041845          136 E  136 (143)
Q Consensus       136 ~  136 (143)
                      .
T Consensus       208 ~  208 (264)
T cd06626         208 E  208 (264)
T ss_pred             C
Confidence            4

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.92  E-value=2.8e-25  Score=150.83  Aligned_cols=129  Identities=26%  Similarity=0.250  Sum_probs=105.0

Q ss_pred             CCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            5 RHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         5 ~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      +|||++++++++...     +..++++||+++++|.+.+...  ....+++.....++.|++.|+.+||+   .+++|+|
T Consensus        77 ~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~d  153 (291)
T cd06639          77 NHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHN---NRIIHRD  153 (291)
T ss_pred             CCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccC
Confidence            799999999998753     3588999999999999887421  23467888999999999999999997   8999999


Q ss_pred             CCCCcEEEcCCCcccccccchhhcc------------------ccccCCC-----CCCCcccchhhhhhhhccccccCCC
Q 041845           78 VKSTNILLDENWVAKHSRERQLRLL------------------GSRILPA-----KLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        78 l~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~-----~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ++|+||+++.++.++++|||.....                  |+.+...     .++.++|+||+||++|+|+++..|+
T Consensus       154 lkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~  233 (291)
T cd06639         154 VKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPL  233 (291)
T ss_pred             CCHHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCC
Confidence            9999999999999999999865421                  1111111     2578899999999999999987776


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       234 ~~  235 (291)
T cd06639         234 FD  235 (291)
T ss_pred             CC
Confidence            53

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.92  E-value=3.6e-25  Score=151.22  Aligned_cols=130  Identities=24%  Similarity=0.288  Sum_probs=104.5

Q ss_pred             CCCCCCCCcceeeEEeecCC--------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK--------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~--------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      +++++||||+++++++....        ..++++||+.+ ++.+.+... ...+++..++.++.|++.|+.|||+   .+
T Consensus        65 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~---~~  139 (310)
T cd07865          65 LQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DLAGLLSNK-NVKFTLSEIKKVMKMLLNGLYYIHR---NK  139 (310)
T ss_pred             HHhCCCCCccceEEEEecccccccCCCceEEEEEcCCCc-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHH---CC
Confidence            35789999999999987654        34899999964 888877433 3467889999999999999999998   89


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhcc----------------------ccccCC-CCCCCcccchhhhhhhhcccc
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRLL----------------------GSRILP-AKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      ++|+|++|+||+++.++.++++|||.+...                      |+.... ..++.++|+||+|+++|+|++
T Consensus       140 i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t  219 (310)
T cd07865         140 ILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWT  219 (310)
T ss_pred             eeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHh
Confidence            999999999999999999999999865321                      221222 235678999999999999998


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..++.
T Consensus       220 ~~~~~~  225 (310)
T cd07865         220 RSPIMQ  225 (310)
T ss_pred             CCCCCC
Confidence            766554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.92  E-value=4e-25  Score=147.71  Aligned_cols=137  Identities=23%  Similarity=0.326  Sum_probs=110.2

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCC--CCCee
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGT--RNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~--~~~i~   74 (143)
                      |+.++|+||+++++.+..  +...++++||+++++|.+++...  ....+++.....++.|++.|+.++|...  ..+++
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~  132 (265)
T cd08217          53 LRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVL  132 (265)
T ss_pred             HHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcce
Confidence            356899999999998764  45678999999999999988543  2356788899999999999999999211  18899


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+|++|+||+++.++.++++|||.....                  |+......++.++|+||||+++|+|+++..|+..
T Consensus       133 h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  212 (265)
T cd08217         133 HRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTA  212 (265)
T ss_pred             ecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccC
Confidence            9999999999999999999999865432                  2223334567789999999999999998777654


Q ss_pred             c
Q 041845          137 Q  137 (143)
Q Consensus       137 ~  137 (143)
                      .
T Consensus       213 ~  213 (265)
T cd08217         213 R  213 (265)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.92  E-value=3.7e-25  Score=150.17  Aligned_cols=129  Identities=22%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.+ +|+||+++++++..+...++++||+++++|.+++...  ..++...+..++.|++.|+.|||+   .+++|+|++|
T Consensus        59 ~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~---~~i~H~dl~p  133 (290)
T cd05613          59 EHIRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHK---LGIIYRDIKL  133 (290)
T ss_pred             HhcccCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCH
Confidence            345 5899999999999888999999999999999998544  357788888899999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc-------------------cccCC--CCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLLG-------------------SRILP--AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+++.++.++++|||.+....                   +....  ..++.++|+||||+++|+++++..|+.
T Consensus       134 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~  209 (290)
T cd05613         134 ENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFT  209 (290)
T ss_pred             HHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCC
Confidence            99999999999999998654321                   11111  234678999999999999999887765

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.91  E-value=3.2e-25  Score=148.26  Aligned_cols=132  Identities=24%  Similarity=0.296  Sum_probs=112.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++++..++..++++||+++++|.+++...  ..++......++.|++.++.++|+  ..+++|+|++|+
T Consensus        54 ~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~--~~~~~H~~l~~~  129 (264)
T cd06623          54 RSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHT--KRHIIHRDIKPS  129 (264)
T ss_pred             HhcCCCCeeeEEEEEccCCeEEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhc--cCCCccCCCCHH
Confidence            4578999999999999999999999999999999999654  467889999999999999999994  278999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.....                  |+......++.++|+||||+++|+++++..|+...
T Consensus       130 ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~  203 (264)
T cd06623         130 NLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPP  203 (264)
T ss_pred             HEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            999999999999999865432                  22233445677899999999999999987776544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.91  E-value=9.4e-26  Score=152.64  Aligned_cols=129  Identities=26%  Similarity=0.315  Sum_probs=107.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++++||++++++.......  ..+++...+.++.|++.++.|||+   .+++|+|++|+
T Consensus        55 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~---~~i~h~~l~p~  129 (286)
T cd07846          55 KQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHS---HNIIHRDIKPE  129 (286)
T ss_pred             HhcCCcchhhHHHhcccCCeEEEEEecCCccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHH
Confidence            5678999999999999999999999999988888766432  357889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||++++++.++++|||.+...                  |+.... ..++.++|+||||+++|+|+++..++.
T Consensus       130 ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~  202 (286)
T cd07846         130 NILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFP  202 (286)
T ss_pred             HEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999865421                  111111 235678999999999999999866554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.91  E-value=2.3e-25  Score=157.11  Aligned_cols=138  Identities=22%  Similarity=0.263  Sum_probs=118.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||-||.+...|++++.+++|||-+.+ +...++.+...+.+++...+.++.||+.|++|||.   ++|+|+||||
T Consensus       617 Lq~l~HPGiV~le~M~ET~ervFVVMEKl~G-DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~---knIvHCDLKP  692 (888)
T KOG4236|consen  617 LQNLHHPGIVNLECMFETPERVFVVMEKLHG-DMLEMILSSEKGRLPERITKFLVTQILVALRYLHF---KNIVHCDLKP  692 (888)
T ss_pred             HHhcCCCCeeEEEEeecCCceEEEEehhhcc-hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhh---cceeeccCCc
Confidence            4678999999999999999999999999955 66666656666789999999999999999999997   9999999999


Q ss_pred             CcEEEcCC---Ccccccccchhhccccc-----------------cCCCCCCCcccchhhhhhhhccccccCCCCccccc
Q 041845           81 TNILLDEN---WVAKHSRERQLRLLGSR-----------------ILPAKLTEKSDVYSFGVLCARPAMLPMAENEQEVE  140 (143)
Q Consensus        81 ~nil~~~~---~~~k~~~~~~~~~~~~~-----------------~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~~~  140 (143)
                      +|+|+.+.   ..+|++|||.++..++.                 +..+.|+..-|+||.|+++|--+.+-+||++.+.-
T Consensus       693 ENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdI  772 (888)
T KOG4236|consen  693 ENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDI  772 (888)
T ss_pred             hheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccch
Confidence            99999755   56899999998754443                 45567889999999999999999999999987765


Q ss_pred             cC
Q 041845          141 HD  142 (143)
Q Consensus       141 ~~  142 (143)
                      .|
T Consensus       773 nd  774 (888)
T KOG4236|consen  773 ND  774 (888)
T ss_pred             hH
Confidence            44

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.91  E-value=6.2e-25  Score=150.98  Aligned_cols=131  Identities=29%  Similarity=0.355  Sum_probs=108.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++++++.+++..++++||+.+ ++.+.+... ...+++..+..++.+++.++.|||+   .+++|+|++|
T Consensus        79 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~g-~l~~~~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~---~~i~H~dL~p  153 (317)
T cd06635          79 LQRIKHPNSIEYKGCYLREHTAWLVMEYCLG-SASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKA  153 (317)
T ss_pred             HHhCCCCCEEEEEEEEeeCCeEEEEEeCCCC-CHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCc
Confidence            3568999999999999999999999999974 777776432 3467889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------cccc---CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------GSRI---LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------~~~~---~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.....              |+..   ..+.++.++|+|||||++|+|+++..|+..
T Consensus       154 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~  226 (317)
T cd06635         154 GNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  226 (317)
T ss_pred             ccEEECCCCCEEEecCCCccccCCcccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999865322              2222   234577889999999999999998777543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=5.5e-25  Score=148.34  Aligned_cols=127  Identities=20%  Similarity=0.267  Sum_probs=107.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      .|||++++++++..+...+++|||+++++|.+++...   .+++.....++.|++.++.|+|+   .+++|+|++|.||+
T Consensus        60 ~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~---~~i~H~dl~p~ni~  133 (277)
T cd06917          60 QPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHK---VGVIHRDIKAANIL  133 (277)
T ss_pred             CCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcCHHHEE
Confidence            4999999999999999999999999999999988442   67888999999999999999997   89999999999999


Q ss_pred             EcCCCcccccccchhhcc------------------ccccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRLL------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++..+.++++|||.+...                  |+... ...++.++|+||||+++|+|+++..|+...
T Consensus       134 i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~  205 (277)
T cd06917         134 VTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDV  205 (277)
T ss_pred             EcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999865322                  22122 223578899999999999999988877543

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.91  E-value=5.9e-25  Score=150.60  Aligned_cols=132  Identities=26%  Similarity=0.363  Sum_probs=107.0

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcC---CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNN---HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      ++.++||||+++++++.+.  ...++|+||+++ ++.+.+...   ....++...++.++.|++.|+.|||+   .+++|
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~h  131 (316)
T cd07842          56 LRELKHENVVSLVEVFLEHADKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHS---NWVLH  131 (316)
T ss_pred             HHhcCCCCccceEEEEeCCCCceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHh---CCEee
Confidence            3568999999999999887  789999999975 777666322   22367888899999999999999998   89999


Q ss_pred             cCCCCCcEEEcC----CCcccccccchhhcc---------------------ccccCC-CCCCCcccchhhhhhhhcccc
Q 041845           76 RDVKSTNILLDE----NWVAKHSRERQLRLL---------------------GSRILP-AKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        76 ~~l~~~nil~~~----~~~~k~~~~~~~~~~---------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +|++|+||+++.    .+.++++|||.+...                     |+.... ..++.++|+||||+++++|++
T Consensus       132 ~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~  211 (316)
T cd07842         132 RDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLT  211 (316)
T ss_pred             CCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHh
Confidence            999999999999    899999999965432                     111222 346788999999999999999


Q ss_pred             ccCCCCc
Q 041845          130 LPMAENE  136 (143)
Q Consensus       130 ~~~~~~~  136 (143)
                      +..++..
T Consensus       212 ~~~~~~~  218 (316)
T cd07842         212 LEPIFKG  218 (316)
T ss_pred             cCCCCcC
Confidence            8777653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.91  E-value=3.4e-25  Score=149.79  Aligned_cols=130  Identities=19%  Similarity=0.265  Sum_probs=109.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|||++++++.+.+++..++++||++ ++|.+++.......+++..+..++.|++.++.|||+   .+++|+|++|+
T Consensus        53 ~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~---~~~~H~dl~p~  128 (283)
T cd07835          53 KELNHPNIVRLLDVVHSENKLYLVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHS---HRVLHRDLKPQ  128 (283)
T ss_pred             HhcCCCCccCHhheeccCCeEEEEEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCHH
Confidence            56789999999999999999999999995 589998865544567899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+++.++.+++.|||.+...                  |+.... ..++.++|+||+|+++|+|+++..|+.
T Consensus       129 nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  201 (283)
T cd07835         129 NLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFP  201 (283)
T ss_pred             HEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999865421                  222222 235778999999999999999877764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-25  Score=157.47  Aligned_cols=131  Identities=19%  Similarity=0.170  Sum_probs=116.4

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      +.+.|.||+++..|.++..+|+.||-|-+|.+...++.+  +.|+..+...++.-++.|..|||.   ++|+.|||||+|
T Consensus       476 ~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLrdR--g~Fdd~tarF~~acv~EAfeYLH~---k~iIYRDLKPEN  550 (732)
T KOG0614|consen  476 ECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILRDR--GSFDDYTARFYVACVLEAFEYLHR---KGIIYRDLKPEN  550 (732)
T ss_pred             hcCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhhhc--CCcccchhhhhHHHHHHHHHHHHh---cCceeccCChhh
Confidence            456899999999999999999999999999999999554  589999999999999999999997   999999999999


Q ss_pred             EEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           83 ILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        83 il~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      ++++.+|.+|+.|||++..                 +|+-++....+.++|.||+|+++||+++|..||+...
T Consensus       551 llLd~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~d  623 (732)
T KOG0614|consen  551 LLLDNRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVD  623 (732)
T ss_pred             eeeccCCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCc
Confidence            9999999999999998742                 3334556667889999999999999999988887654

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.91  E-value=6.1e-25  Score=150.43  Aligned_cols=130  Identities=28%  Similarity=0.329  Sum_probs=106.7

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |++++|+|++++++++...  +..++++||+.+ +|.+.+... ...+++.....++.|++.|+.|||+   .+++|+|+
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~l~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl  134 (309)
T cd07845          60 LLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNM-PTPFSESQVKCLMLQLLRGLQYLHE---NFIIHRDL  134 (309)
T ss_pred             HHhCCCCCCcceEEEEecCCCCeEEEEEecCCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCC
Confidence            3578999999999998754  468999999974 888877543 3467889999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +|+||+++.++.++++|||.+...                  |+.... ..++.++|+||+||++|+|+++..++.
T Consensus       135 ~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~  210 (309)
T cd07845         135 KVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLP  210 (309)
T ss_pred             CHHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999865421                  121222 346788999999999999999877665

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.91  E-value=4.9e-25  Score=153.51  Aligned_cols=128  Identities=21%  Similarity=0.259  Sum_probs=105.4

Q ss_pred             CCCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      ++.++|+||+++++++....      ..++++||+.+ ++.+.+..    .++...+..++.|++.|+.|||+   .+++
T Consensus        69 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~---~gi~  140 (353)
T cd07850          69 MKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQM----DLDHERMSYLLYQMLCGIKHLHS---AGII  140 (353)
T ss_pred             HHhcCCCCCcceeeeeccCCCccccCcEEEEEeccCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHh---CCee
Confidence            35679999999999886432      46899999964 88887732    27788889999999999999998   8999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+|++|+||+++.++.++++|||.+...                 |+......++.++|+||+||++|+|+++..++..
T Consensus       141 H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~  219 (353)
T cd07850         141 HRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPG  219 (353)
T ss_pred             eCCCCHHHEEECCCCCEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCC
Confidence            9999999999999999999999876422                 2223345678899999999999999998777653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.6e-25  Score=156.75  Aligned_cols=126  Identities=19%  Similarity=0.235  Sum_probs=102.6

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      .|.+||+++++-..++.+|||||+=+ .+|..++.++......+ +++.+..||+.|+.++|+   .+|+|.||||.|+|
T Consensus       418 g~~~IIqL~DYEv~d~~lYmvmE~Gd-~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~---~gIVHSDLKPANFL  492 (677)
T KOG0596|consen  418 GHDKIIQLYDYEVTDGYLYMVMECGD-IDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQ---HGIVHSDLKPANFL  492 (677)
T ss_pred             CCceEEEEeeeeccCceEEEEeeccc-ccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHH---hceeecCCCcccEE
Confidence            48899999999999999999999765 59999997664433333 788999999999999998   99999999999999


Q ss_pred             EcCCCcccccccchhhccc--------------------cccCCC-----------CCCCcccchhhhhhhhccccccCC
Q 041845           85 LDENWVAKHSRERQLRLLG--------------------SRILPA-----------KLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~~--------------------~~~~~~-----------~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      +- +|..|+.|||.+.-.+                    +.+...           +.+.++||||+||++|+|.++..|
T Consensus       493 lV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktP  571 (677)
T KOG0596|consen  493 LV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTP  571 (677)
T ss_pred             EE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCc
Confidence            87 4789999999875222                    221111           246789999999999999998888


Q ss_pred             CCc
Q 041845          134 ENE  136 (143)
Q Consensus       134 ~~~  136 (143)
                      +.+
T Consensus       572 f~~  574 (677)
T KOG0596|consen  572 FGQ  574 (677)
T ss_pred             hHH
Confidence            763

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=151.19  Aligned_cols=132  Identities=22%  Similarity=0.237  Sum_probs=109.9

Q ss_pred             CCCCCCCcceeeEEee-cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHV-ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.|+||.||+++++|. +...+|-|.|||++.+|.-++..+  ....+..+..|+.||+.|+.||.... .+|+|.||||
T Consensus       522 KeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQh--klmSEKEARSIiMQiVnAL~YLNEik-pPIIHYDLKP  598 (775)
T KOG1151|consen  522 KELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQH--KLMSEKEARSIIMQIVNALKYLNEIK-PPIIHYDLKP  598 (775)
T ss_pred             hccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhccC-CCeeeeccCC
Confidence            5789999999999985 677899999999999999888544  46788899999999999999999844 6899999999


Q ss_pred             CcEEEcCC---Ccccccccchhhccccc-------------------------cC----CCCCCCcccchhhhhhhhccc
Q 041845           81 TNILLDEN---WVAKHSRERQLRLLGSR-------------------------IL----PAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        81 ~nil~~~~---~~~k~~~~~~~~~~~~~-------------------------~~----~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      .|||+-++   |.+|++|||+...+...                         +.    +...+.++|+||+||++|+.+
T Consensus       599 gNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQCl  678 (775)
T KOG1151|consen  599 GNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCL  678 (775)
T ss_pred             ccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhh
Confidence            99999654   78899999987533221                         11    234578999999999999999


Q ss_pred             cccCCCCc
Q 041845          129 MLPMAENE  136 (143)
Q Consensus       129 ~~~~~~~~  136 (143)
                      +|.-||.-
T Consensus       679 YGrKPFGh  686 (775)
T KOG1151|consen  679 YGRKPFGH  686 (775)
T ss_pred             ccCCCCCC
Confidence            98888764

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.91  E-value=9.9e-25  Score=149.77  Aligned_cols=131  Identities=31%  Similarity=0.370  Sum_probs=108.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++|||++++++++.+++..++++||+. +++.+.+... ...+++..+..++.|++.++.|||+   .+++|+|++|
T Consensus        75 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-~~~l~~~~~~~~~~qi~~al~~LH~---~gi~H~dl~p  149 (313)
T cd06633          75 LQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-GSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHS---HNMIHRDIKA  149 (313)
T ss_pred             HHhCCCCCCccEEEEEEeCCEEEEEEecCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCh
Confidence            356899999999999999999999999996 5787777433 3467888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc--------------ccccc---CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL--------------LGSRI---LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~--------------~~~~~---~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+++.|||....              +|+.+   ....++.++|+||||+++|+|+++..|+..
T Consensus       150 ~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~  222 (313)
T cd06633         150 GNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  222 (313)
T ss_pred             hhEEECCCCCEEEeecCCCcccCCCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999976432              22222   134577889999999999999998777654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.91  E-value=1.3e-24  Score=146.21  Aligned_cols=132  Identities=22%  Similarity=0.318  Sum_probs=103.7

Q ss_pred             CCCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcC----CCCCCcHHHHHHHHHHHHHHHhHhhcCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNN----HKPPLQWMWRLKICIGAARGLHYLHTGTR   70 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lh~~~~   70 (143)
                      |++++||||+++++++....      ..+++++|++++++..++...    ....++......++.|++.|+.|||+   
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~---  131 (273)
T cd05074          55 MKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSS---  131 (273)
T ss_pred             HhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHh---
Confidence            46789999999999886432      236788999999998876321    12346778889999999999999998   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                      .+++|+|++|+||+++.++.+++.|||.+...                    ++......++.++|+|||||++|++++ 
T Consensus       132 ~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~  211 (273)
T cd05074         132 KNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTR  211 (273)
T ss_pred             CCEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhC
Confidence            89999999999999999999999999875432                    111223445778999999999999988 


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..|+.
T Consensus       212 g~~p~~  217 (273)
T cd05074         212 GQTPYA  217 (273)
T ss_pred             CCCCCC
Confidence            545543

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.91  E-value=8.6e-25  Score=147.61  Aligned_cols=128  Identities=23%  Similarity=0.263  Sum_probs=105.3

Q ss_pred             CC-CCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            3 NL-RHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      ++ +|+|++++++++.++  +.+++++||++ +++.+.+... ...+++..+..++.|++.|+.|||+   .+++|+|++
T Consensus        53 ~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~LH~---~~i~H~dl~  127 (282)
T cd07831          53 RLSPHPNILRLIEVLFDRKTGRLALVFELMD-MNLYELIKGR-KRPLPEKRVKSYMYQLLKSLDHMHR---NGIFHRDIK  127 (282)
T ss_pred             hcCCCCCccceEEEEecCCCCcEEEEEecCC-ccHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCceecccC
Confidence            45 499999999999877  88999999997 4888877543 2467889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc-----------------ccccC-CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL-----------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |.||+++. +.++++|||.+...                 |+... ...++.++|+||+||++|||+++..|++.
T Consensus       128 p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~  201 (282)
T cd07831         128 PENILIKD-DILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPG  201 (282)
T ss_pred             HHHEEEcC-CCeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCC
Confidence            99999999 99999999866421                 22122 23457889999999999999997666653

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1e-25  Score=155.02  Aligned_cols=130  Identities=21%  Similarity=0.206  Sum_probs=115.5

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +-|.+++++.+|.+-+.+|+||||+.+|+|.-.+++-  +.+.++.+..++..|+.++-+||+   ++|+.||||..|++
T Consensus       408 kppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQQ~--GkFKEp~AvFYAaEiaigLFFLh~---kgIiYRDLKLDNvm  482 (683)
T KOG0696|consen  408 KPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV--GKFKEPVAVFYAAEIAIGLFFLHS---KGIIYRDLKLDNVM  482 (683)
T ss_pred             CCchHHHHHHHhhhhhheeeEEEEecCchhhhHHHHh--cccCCchhhhhhHHHHHHhhhhhc---CCeeeeeccccceE
Confidence            3578899999999999999999999999999888554  478888899999999999999998   99999999999999


Q ss_pred             EcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcccc
Q 041845           85 LDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQEV  139 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~~  139 (143)
                      ++..|.+|+.|||...                  .+|+-+..++|..++|+||+|+++|||+.+..|++.+..
T Consensus       483 Ld~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE  555 (683)
T KOG0696|consen  483 LDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE  555 (683)
T ss_pred             eccCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCH
Confidence            9999999999999753                  445556778999999999999999999999999886654

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.91  E-value=1.1e-24  Score=144.94  Aligned_cols=133  Identities=22%  Similarity=0.309  Sum_probs=113.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++|+|++++.+.+..+...++++|++++++|.+.+.+..  ...+++.....++.+++.++.+||+   .+++|+|++
T Consensus        54 ~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~---~~~~H~dl~  130 (258)
T cd08215          54 KKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHS---RKILHRDIK  130 (258)
T ss_pred             HhcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHh---CCEecccCC
Confidence            56789999999999999999999999999999999886542  3578889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |.||+++.++.++++|||.....                  |+......++.++|+||+|+++++|+++..|+...
T Consensus       131 ~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  206 (258)
T cd08215         131 PQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE  206 (258)
T ss_pred             hHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999865432                  22233455678899999999999999987776543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.91  E-value=7.3e-25  Score=148.16  Aligned_cols=132  Identities=19%  Similarity=0.285  Sum_probs=109.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +++++|+||+++++.+.+.+..++++||+++ ++.+++.... ...+++..+..++.|++.|+.|||+   .+++|+|++
T Consensus        52 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~h~dl~  127 (284)
T cd07836          52 MKELKHENIVRLHDVIHTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHE---NRVLHRDLK  127 (284)
T ss_pred             HHhhcCCCEeeeeeeEeeCCcEEEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCC
Confidence            3567999999999999999999999999985 8888775432 2457889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||++++++.+++.|||.+...                  |+.... ..++.++|+||+|+++|+++++..|+..
T Consensus       128 p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~  203 (284)
T cd07836         128 PQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPG  203 (284)
T ss_pred             HHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999866421                  121212 2357789999999999999998776653

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.91  E-value=1.2e-24  Score=144.17  Aligned_cols=132  Identities=27%  Similarity=0.360  Sum_probs=112.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++.+.+..+...++++||+++++|.+.+.... ..+++.....++.|++.++.+||+   .+++|+|++|.
T Consensus        52 ~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~---~~i~h~dl~p~  127 (253)
T cd05122          52 KKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHS---NGIIHRDIKAA  127 (253)
T ss_pred             HhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhc---CCEecCCCCHH
Confidence            56789999999999999999999999999999999985542 467889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcccc-----------------ccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLLGS-----------------RILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~~-----------------~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+++.|||.......                 .......+.++|+||+|+++++|+++..|+...
T Consensus       128 ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         128 NILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             HEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999986643322                 122334578899999999999999988776644

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.91  E-value=9.5e-25  Score=150.99  Aligned_cols=130  Identities=22%  Similarity=0.261  Sum_probs=108.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+||+++++++..++..+++||++. ++|.+.+...  ..+++.....++.|++.|+.+||+   .+++|+|++|
T Consensus        74 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~---~~i~H~dl~~  147 (335)
T PTZ00024         74 MNEIKHENIMGLVDVYVEGDFINLVMDIMA-SDLKKVVDRK--IRLTESQVKCILLQILNGLNVLHK---WYFMHRDLSP  147 (335)
T ss_pred             HHhCCCcceeeeeEEEecCCcEEEEEeccc-cCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccH
Confidence            356899999999999999999999999997 5899888543  357888899999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc--------------------------------cccCC-CCCCCcccchhhhhhhhcc
Q 041845           81 TNILLDENWVAKHSRERQLRLLG--------------------------------SRILP-AKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~--------------------------------~~~~~-~~~~~~~Di~s~G~~~~~~  127 (143)
                      +||+++.++.++++|||......                                +.... ..++.++|+||+||++|+|
T Consensus       148 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el  227 (335)
T PTZ00024        148 ANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAEL  227 (335)
T ss_pred             HHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHH
Confidence            99999999999999998664322                                11111 2357789999999999999


Q ss_pred             ccccCCCCc
Q 041845          128 AMLPMAENE  136 (143)
Q Consensus       128 ~~~~~~~~~  136 (143)
                      +++..|+..
T Consensus       228 ~tg~~p~~~  236 (335)
T PTZ00024        228 LTGKPLFPG  236 (335)
T ss_pred             HhCCCCCCC
Confidence            998776653

>PTZ00284 protein kinase; Provisional

Probab=99.91  E-value=1.3e-24  Score=156.38  Aligned_cols=127  Identities=17%  Similarity=0.174  Sum_probs=103.4

Q ss_pred             CCCCcceeeEEeecC-CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            5 RHRHLVSLIGHHVEN-KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         5 ~h~niv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      +|.+++++++++... ...+++||++ +++|.+.+.+.  ..+.+..+..++.|++.|+.|||+  +.+|+||||||+||
T Consensus       189 ~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~yLH~--~~gIiHrDlKP~NI  263 (467)
T PTZ00284        189 DRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDYFHT--ELHLMHTDLKPENI  263 (467)
T ss_pred             cCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh--cCCeecCCCCHHHE
Confidence            456788998888754 4688999988 56888887543  468888999999999999999996  24899999999999


Q ss_pred             EEcCCC----------------cccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccC
Q 041845           84 LLDENW----------------VAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        84 l~~~~~----------------~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      |++..+                .+|++|||.+.               .+|+.+....++.++|||||||++|||+++..
T Consensus       264 Ll~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~  343 (467)
T PTZ00284        264 LMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKL  343 (467)
T ss_pred             EEecCCcccccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            998665                48999998532               34455556678899999999999999999988


Q ss_pred             CCCc
Q 041845          133 AENE  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      |+..
T Consensus       344 pf~~  347 (467)
T PTZ00284        344 LYDT  347 (467)
T ss_pred             CCCC
Confidence            8764

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.91  E-value=8.1e-25  Score=145.75  Aligned_cols=134  Identities=25%  Similarity=0.316  Sum_probs=112.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +++++|+||+++.+++.+....++++||+++++|.+++...  ....+++...+.++.|++.|+.+||+   .+++|+|+
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~---~~i~h~~l  129 (256)
T cd08530          53 LASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHE---QKILHRDL  129 (256)
T ss_pred             HHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCC
Confidence            35678999999999999999999999999999999988542  23467888889999999999999997   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|.||+++.++..++.|||.+...                |+......++.++|+||+|+++|+++++..|+...
T Consensus       130 ~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~  204 (256)
T cd08530         130 KSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEAR  204 (256)
T ss_pred             CcceEEEecCCcEEEeeccchhhhccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999865432                22233445677899999999999999988776543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-25  Score=149.47  Aligned_cols=131  Identities=22%  Similarity=0.302  Sum_probs=112.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++.+.|++|+++|.+.....+|+|||||..|++.+.++.+ +..+.+..+..++.+-+.++.|||.   ..-+|||+|.
T Consensus        82 MQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R-~K~L~E~EIs~iL~~TLKGL~YLH~---~~KIHRDIKA  157 (502)
T KOG0574|consen   82 MQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRAR-RKPLSEQEISAVLRDTLKGLQYLHD---LKKIHRDIKA  157 (502)
T ss_pred             HHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHh-cCCccHHHHHHHHHHHHhHHHHHHH---HHHHHhhccc
Confidence            35678899999999999999999999999999999999544 4588889999999999999999997   7789999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      .|||+..+|..|+.|||.+.-                  +|+.+..-.|+.++||||+|++..||+-+..|..
T Consensus       158 GNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYs  230 (502)
T KOG0574|consen  158 GNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYS  230 (502)
T ss_pred             ccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcc
Confidence            999999999999999997642                  2233334468899999999999999988766554

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.91  E-value=1.1e-24  Score=148.54  Aligned_cols=130  Identities=23%  Similarity=0.277  Sum_probs=106.3

Q ss_pred             CCCCCCCcceeeEEeecCC----------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENK----------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRN   71 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~----------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~   71 (143)
                      +.++|||++++++++.+..          .+++++||+++ ++.+.+... ...+++..+..++.|++.|+.|||+   .
T Consensus        61 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~  135 (302)
T cd07864          61 RQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHK---K  135 (302)
T ss_pred             HhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---C
Confidence            5679999999999987654          68899999976 777777443 3467889999999999999999998   8


Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhcc-------------------ccccC-CCCCCCcccchhhhhhhhcccccc
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRLL-------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +++|+|++|+||+++.++.++++|||.+...                   |+... ...++.++|+||+||++|+++++.
T Consensus       136 ~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~  215 (302)
T cd07864         136 NFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKK  215 (302)
T ss_pred             CeecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999865421                   11121 123577899999999999999987


Q ss_pred             CCCCc
Q 041845          132 MAENE  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      .++..
T Consensus       216 ~~~~~  220 (302)
T cd07864         216 PIFQA  220 (302)
T ss_pred             CCCCC
Confidence            76654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.91  E-value=5.5e-25  Score=152.21  Aligned_cols=131  Identities=23%  Similarity=0.317  Sum_probs=107.0

Q ss_pred             CCCCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            1 LSNLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      |+.++||||+++++++..    ....++++||+. ++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+
T Consensus        58 l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~  131 (334)
T cd07855          58 LRHFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIHS---ANVIHR  131 (334)
T ss_pred             HHhcCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecC
Confidence            457889999999998763    346889999996 5898888543  357889999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhcc----------------------ccccCC-CCCCCcccchhhhhhhhccccccCC
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRLL----------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      |++|+||+++.++.++++|||.+...                      |+.+.. ..++.++|+||+||++|+|+++..|
T Consensus       132 dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~p  211 (334)
T cd07855         132 DLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQL  211 (334)
T ss_pred             CCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCc
Confidence            99999999999999999999875321                      111112 3467889999999999999998877


Q ss_pred             CCcc
Q 041845          134 ENEQ  137 (143)
Q Consensus       134 ~~~~  137 (143)
                      +...
T Consensus       212 f~~~  215 (334)
T cd07855         212 FPGK  215 (334)
T ss_pred             cCCC
Confidence            7543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.91  E-value=1.6e-24  Score=147.54  Aligned_cols=130  Identities=16%  Similarity=0.108  Sum_probs=101.1

Q ss_pred             CCCCCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            2 SNLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      +.++|+|++++++++....    ..++++++... ++.+.+...  ...++..+..++.|++.|+.|||+   .+++|||
T Consensus        78 ~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~iiHrD  151 (294)
T PHA02882         78 HNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLVE-NTKEIFKRI--KCKNKKLIKNIMKDMLTTLEYIHE---HGISHGD  151 (294)
T ss_pred             ccCCCCCCCcEEEeeeEecCCceEEEEEEehhcc-CHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHh---CCeecCC
Confidence            3568999999999765443    34677777643 666665332  234677788999999999999998   8999999


Q ss_pred             CCCCcEEEcCCCcccccccchhhccc-------------------------cccCCCCCCCcccchhhhhhhhccccccC
Q 041845           78 VKSTNILLDENWVAKHSRERQLRLLG-------------------------SRILPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        78 l~~~nil~~~~~~~k~~~~~~~~~~~-------------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      |||+||+++.++.++++|||.++...                         +......++.++|+||+||++|||+++..
T Consensus       152 iKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~  231 (294)
T PHA02882        152 IKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKL  231 (294)
T ss_pred             CCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999864321                         11223456889999999999999999988


Q ss_pred             CCCcc
Q 041845          133 AENEQ  137 (143)
Q Consensus       133 ~~~~~  137 (143)
                      |+...
T Consensus       232 P~~~~  236 (294)
T PHA02882        232 PWKGF  236 (294)
T ss_pred             CCCcc
Confidence            88644

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.91  E-value=1.1e-24  Score=144.85  Aligned_cols=131  Identities=27%  Similarity=0.330  Sum_probs=111.4

Q ss_pred             CCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      ++++|+||+++++.+.+.  +..++++|++++++|.+++.+..  .+++..+..++.|++.++.|||+   .+++|+|++
T Consensus        54 ~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~---~~~~h~dl~  128 (260)
T cd06606          54 SSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHS---NGIVHRDIK  128 (260)
T ss_pred             HHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH---CCccccCCC
Confidence            567899999999999888  88999999999999999986543  78889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhccc--------------------cccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           80 STNILLDENWVAKHSRERQLRLLG--------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~~--------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |.||+++.++.+++.|||......                    +.......+.++|+||+|+++++++++..|+...
T Consensus       129 p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (260)
T cd06606         129 GANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSEL  206 (260)
T ss_pred             HHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999998654322                    2222334678899999999999999987776543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.91  E-value=1.6e-24  Score=148.37  Aligned_cols=130  Identities=32%  Similarity=0.402  Sum_probs=107.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|+|++++.+++..+...++|+||+. +++.+.+... ...+++..+..++.|++.++.|||+   .+++|+|++|
T Consensus        69 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~l~~LH~---~~i~H~dl~p  143 (308)
T cd06634          69 LQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKA  143 (308)
T ss_pred             HHhCCCCCcccEEEEEEcCCeeEEEEEccC-CCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCH
Confidence            356799999999999999999999999996 5887776433 3457888889999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------cccc---CCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------GSRI---LPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------~~~~---~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      .||+++.++.++++|||.....              |+..   ....++.++|+|||||++|+++++..|+.
T Consensus       144 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~  215 (308)
T cd06634         144 GNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF  215 (308)
T ss_pred             HhEEECCCCcEEECCcccceeecCcccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999865421              2211   12456788999999999999999877754

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.91  E-value=1.4e-24  Score=147.61  Aligned_cols=129  Identities=19%  Similarity=0.245  Sum_probs=104.3

Q ss_pred             CC-CCCCcceeeEEeecCCc-----hhhhHhhhcCCCHHHHhhcCC---CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            3 NL-RHRHLVSLIGHHVENKE-----MILVYDCMARGTLRDHLYNNH---KPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~-----~~lv~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      .+ +|+||+++++++...+.     .+++|||+++ ++.+++....   ...+++.....++.|++.|+.|||+   .++
T Consensus        56 ~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~---~~i  131 (295)
T cd07837          56 MLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK---HGV  131 (295)
T ss_pred             HccCCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHH---CCe
Confidence            45 46999999999876555     7999999985 8888775432   2457889999999999999999997   899


Q ss_pred             eecCCCCCcEEEcC-CCcccccccchhhc------------------cccccCC-CCCCCcccchhhhhhhhccccccCC
Q 041845           74 IHRDVKSTNILLDE-NWVAKHSRERQLRL------------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        74 ~h~~l~~~nil~~~-~~~~k~~~~~~~~~------------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      +|+|++|+||+++. ++.++++|||.+..                  +|+.+.. ..++.++|+||||+++|+|+++..|
T Consensus       132 ~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~  211 (295)
T cd07837         132 MHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPL  211 (295)
T ss_pred             eecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCC
Confidence            99999999999998 88999999986542                  1222222 3467899999999999999998766


Q ss_pred             CC
Q 041845          134 EN  135 (143)
Q Consensus       134 ~~  135 (143)
                      +.
T Consensus       212 ~~  213 (295)
T cd07837         212 FP  213 (295)
T ss_pred             CC
Confidence            64

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=2.2e-24  Score=143.40  Aligned_cols=130  Identities=24%  Similarity=0.314  Sum_probs=110.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++.+++.+++..++++|++++++|.+.+...  ..+++.....++.|++.++.++|+   .+++|+|++|+
T Consensus        54 ~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~  128 (254)
T cd06627          54 KNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHE---QGVIHRDIKAA  128 (254)
T ss_pred             HhCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhh---CCcccCCCCHH
Confidence            5678999999999999999999999999999999988544  467889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+++.|||.+...                  |+......++.++|+||+|+++|+++++..|+..
T Consensus       129 ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~  201 (254)
T cd06627         129 NILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYD  201 (254)
T ss_pred             HEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999865432                  2222233457889999999999999998777653

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=1.2e-24  Score=164.84  Aligned_cols=129  Identities=18%  Similarity=0.220  Sum_probs=102.4

Q ss_pred             CCCCC-CCcceeeEEee-------cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            2 SNLRH-RHLVSLIGHHV-------ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         2 ~~l~h-~niv~~~~~~~-------~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      +.++| +||.++++.|.       ....++.++|++ +++|.+.+.. ....++...++.++.|++.|+.|||+   ++|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~---~gI  101 (793)
T PLN00181         27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDN-PDRSVDAFECFHVFRQIVEIVNAAHS---QGI  101 (793)
T ss_pred             chhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhc-ccccccHHHHHHHHHHHHHHHHHHHh---CCe
Confidence            45677 68888999882       334678889988 4599999953 23568889999999999999999998   999


Q ss_pred             eecCCCCCcEEEcC-------------------CCcccccccchhh----------------------------------
Q 041845           74 IHRDVKSTNILLDE-------------------NWVAKHSRERQLR----------------------------------  100 (143)
Q Consensus        74 ~h~~l~~~nil~~~-------------------~~~~k~~~~~~~~----------------------------------  100 (143)
                      +||||||+|||++.                   ++.+|+.|||.++                                  
T Consensus       102 vHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  181 (793)
T PLN00181        102 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWY  181 (793)
T ss_pred             eeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcce
Confidence            99999999999953                   4456777887542                                  


Q ss_pred             ccccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845          101 LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus       101 ~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ++|+.+....++.++|||||||++|||+++..++.
T Consensus       182 ~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~  216 (793)
T PLN00181        182 TSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSRE  216 (793)
T ss_pred             EChhhhccCCCCchhhhhhHHHHHHHHhhCCCchh
Confidence            33444556678999999999999999998665544

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-24  Score=160.32  Aligned_cols=128  Identities=24%  Similarity=0.327  Sum_probs=108.8

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC------C--------CCCcHHHHHHHHHHHHHHHhHhhcCCC
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH------K--------PPLQWMWRLKICIGAARGLHYLHTGTR   70 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~------~--------~~~~~~~~~~~~~~i~~~l~~lh~~~~   70 (143)
                      +|+||+.+.|+|.++..+++++||+..|+|..+++.+.      .        ..+.....+.++.||+.|+.||.+   
T Consensus       360 ~H~niv~llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~---  436 (609)
T KOG0200|consen  360 KHPNIVNLLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLAS---  436 (609)
T ss_pred             CCcchhhheeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhh---
Confidence            79999999999999999999999999999999996543      0        136778889999999999999998   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      .+++|||+..+|||++.+..+|++|||+++..                     ++.+....++.++|+||||+++||+++
T Consensus       437 ~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~Eifs  516 (609)
T KOG0200|consen  437 VPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFT  516 (609)
T ss_pred             CCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhh
Confidence            88999999999999999999999999998621                     122333578899999999999999998


Q ss_pred             -ccCCCC
Q 041845          130 -LPMAEN  135 (143)
Q Consensus       130 -~~~~~~  135 (143)
                       |..|.+
T Consensus       517 LG~~PYp  523 (609)
T KOG0200|consen  517 LGGTPYP  523 (609)
T ss_pred             CCCCCCC
Confidence             334443

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.90  E-value=4.2e-25  Score=137.38  Aligned_cols=124  Identities=23%  Similarity=0.332  Sum_probs=106.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|+|||+++++...++.+-+|+|||.. +|..+..+. ++.++.....+.+.|++.++.++|+   ..+.|||+||
T Consensus        55 lkelkhknivrl~dvlhsdkkltlvfe~cdq-dlkkyfdsl-ng~~d~~~~rsfmlqllrgl~fchs---hnvlhrdlkp  129 (292)
T KOG0662|consen   55 LKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSL-NGDLDPEIVRSFMLQLLRGLGFCHS---HNVLHRDLKP  129 (292)
T ss_pred             HHHhhhcceeehhhhhccCceeEEeHHHhhH-HHHHHHHhc-CCcCCHHHHHHHHHHHHhhhhhhhh---hhhhhccCCc
Confidence            4678999999999999999999999999986 898888544 4577888889999999999999998   8899999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc-------------------cCCCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR-------------------ILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~-------------------~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      .|.++..+|..|+.|||+++-.+-.                   +...-|+...|+||.||++.|+.-
T Consensus       130 qnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelan  197 (292)
T KOG0662|consen  130 QNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELAN  197 (292)
T ss_pred             ceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhh
Confidence            9999999999999999988633221                   112357889999999999999875

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.90  E-value=1.7e-24  Score=149.83  Aligned_cols=127  Identities=25%  Similarity=0.368  Sum_probs=104.2

Q ss_pred             CCC-CCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            2 SNL-RHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +++ +|+||+++++++..  +...++++||++ ++|...+..+   .+.+.....++.|++.++.|||+   .+++|+|+
T Consensus        61 ~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~---~~i~H~dl  133 (337)
T cd07852          61 QELGDHPNIVKLLNVIKAENDKDIYLVFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHS---GNVIHRDL  133 (337)
T ss_pred             HHhcCCCCccceeeeeccCCCceEEEEecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCeecCCC
Confidence            456 89999999998864  346899999997 5998888543   66788888999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc-----------------------ccccC-CCCCCCcccchhhhhhhhccccccCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL-----------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~-----------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +|+||+++.++.++++|||.+...                       |+.+. ...++.++|+||||+++|+|+++..++
T Consensus       134 ~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf  213 (337)
T cd07852         134 KPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLF  213 (337)
T ss_pred             CHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999866421                       11121 234567899999999999999987766


Q ss_pred             C
Q 041845          135 N  135 (143)
Q Consensus       135 ~  135 (143)
                      .
T Consensus       214 ~  214 (337)
T cd07852         214 P  214 (337)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.90  E-value=9.5e-25  Score=147.54  Aligned_cols=130  Identities=22%  Similarity=0.299  Sum_probs=109.3

Q ss_pred             CCCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.++ |+|++++++++.+++..+++|||+ ++++.+.+.......+++..+..++.|++.++.|||+   ++++|+|++|
T Consensus        52 ~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~---~~i~H~dl~~  127 (283)
T cd07830          52 RKLNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHK---HGFFHRDLKP  127 (283)
T ss_pred             HhccCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCh
Confidence            3566 999999999999999999999999 6799988865544577899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-----------------cccc-CCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL-----------------GSRI-LPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-----------------~~~~-~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      .||+++.++.++++|||.....                 |+.. ....++.++|+||||+++++++++..+++
T Consensus       128 ~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~  200 (283)
T cd07830         128 ENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFP  200 (283)
T ss_pred             hhEEEcCCCCEEEeecccceeccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccC
Confidence            9999999999999999865422                 1112 12345788999999999999999876664

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.90  E-value=9.6e-25  Score=147.97  Aligned_cols=129  Identities=27%  Similarity=0.300  Sum_probs=103.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHh---hcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL---YNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +|+||+++++++..++..++++|++.. ++.+..   .......+++.....++.|++.|+.|+|+  ..+++|+|++|+
T Consensus        61 ~~~~iv~~~~~~~~~~~~~~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~  137 (288)
T cd06616          61 DCPYIVKFYGALFREGDCWICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKE--ELKIIHRDVKPS  137 (288)
T ss_pred             CCCCEeeeeeEEecCCcEEEEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh--cCCeeccCCCHH
Confidence            499999999999988889999999864 655433   22233568889999999999999999996  248999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-----------------ccccCCC---CCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-----------------GSRILPA---KLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~---~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                 |+.+...   .++.++|+||+|+++|+|+++..|+..
T Consensus       138 Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  212 (288)
T cd06616         138 NILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPK  212 (288)
T ss_pred             HEEEccCCcEEEeecchhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchh
Confidence            999999999999999876421                 2222222   578899999999999999998888653

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.90  E-value=5e-25  Score=148.75  Aligned_cols=130  Identities=21%  Similarity=0.292  Sum_probs=108.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++.+..++..++++||+++ ++.+.+.... ..+++..+..++.|++.++.+||+   .+++|+|++|.
T Consensus        53 ~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~dl~p~  127 (283)
T cd05118          53 KELNHPNIIKLLDVFRHKGDLYLVFEFMDT-DLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHS---HGILHRDLKPE  127 (283)
T ss_pred             HHhcCCCcchHHHhhccCCCEEEEEeccCC-CHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHH---CCeeecCcCHH
Confidence            567899999999999999999999999975 8888875432 577889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccc------------------cccCCC-CCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLG------------------SRILPA-KLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~------------------~~~~~~-~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||......                  +..... .++.++|+||+|+++|+++++..+++.
T Consensus       128 nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~  201 (283)
T cd05118         128 NLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPG  201 (283)
T ss_pred             HEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999998653221                  112222 567889999999999999998766643

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.90  E-value=1.3e-24  Score=147.44  Aligned_cols=129  Identities=23%  Similarity=0.173  Sum_probs=107.6

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++ +|+||+++.+.+..+...+++|||+++++|.+.+...  ..+++.....++.|++.++.|||+   .+++|+|++|
T Consensus        59 ~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~---~~~~H~dl~p  133 (288)
T cd05583          59 EAVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLHQ---LGIIYRDIKL  133 (288)
T ss_pred             HhccCCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCH
Confidence            355 5999999999999999999999999999999988543  367788888999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCC--CCCCcccchhhhhhhhccccccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPA--KLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~--~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      .||+++.++.++++|||.+...                   |+.....  ..+.++|+||+|+++|+|+++..|+.
T Consensus       134 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  209 (288)
T cd05583         134 ENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFT  209 (288)
T ss_pred             HHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999865431                   1111111  25678999999999999999877764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-25  Score=149.94  Aligned_cols=132  Identities=22%  Similarity=0.193  Sum_probs=116.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.-+||.+..+.-.|.+.+.+|+||||..+|.|.-.+.+  ...+++.....+-..|+.|+.|||+   ++|+.||+|.
T Consensus       222 L~~~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsr--er~FsE~RtRFYGaEIvsAL~YLHs---~~ivYRDlKL  296 (516)
T KOG0690|consen  222 LQNCRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSR--ERVFSEDRTRFYGAEIVSALGYLHS---RNIVYRDLKL  296 (516)
T ss_pred             HHhccCcHHHHhhhhhccCceEEEEEEEccCceEeeehhh--hhcccchhhhhhhHHHHHHhhhhhh---CCeeeeechh
Confidence            3566899999999999999999999999999999888854  3477888888999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|++++++|.+|+.|||++.                  ++|+.+....|..++|+|.+|+++|||..|.+|+-.+
T Consensus       297 ENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~  371 (516)
T KOG0690|consen  297 ENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNK  371 (516)
T ss_pred             hhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccccc
Confidence            99999999999999999763                  4455566678899999999999999999998888654

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.90  E-value=1.7e-24  Score=149.83  Aligned_cols=129  Identities=21%  Similarity=0.282  Sum_probs=104.7

Q ss_pred             CCCCCCCCcceeeEEeecCC-----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVENK-----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~-----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |+.++|+||+++++++....     ..++++||+.+ ++.+.+..   ..+++..+..++.|++.|+.+||+   .+++|
T Consensus        57 l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH~---~~ivH  129 (336)
T cd07849          57 LRRFKHENIIGILDIIRPPSFESFNDVYIVQELMET-DLYKLIKT---QHLSNDHIQYFLYQILRGLKYIHS---ANVLH  129 (336)
T ss_pred             HHhCCCCCcCchhheeecccccccceEEEEehhccc-CHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeec
Confidence            35688999999998876443     47899999975 88877743   367888999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc---------------------ccccC-CCCCCCcccchhhhhhhhccccccCC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL---------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      +|++|+||+++.++.++++|||.+...                     |+.+. ...++.++|+||+||++|+|+++..+
T Consensus       130 ~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~  209 (336)
T cd07849         130 RDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPL  209 (336)
T ss_pred             cCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999865321                     22122 23467889999999999999998777


Q ss_pred             CCc
Q 041845          134 ENE  136 (143)
Q Consensus       134 ~~~  136 (143)
                      +..
T Consensus       210 f~~  212 (336)
T cd07849         210 FPG  212 (336)
T ss_pred             CCC
Confidence            653

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.90  E-value=6.4e-25  Score=146.82  Aligned_cols=131  Identities=24%  Similarity=0.303  Sum_probs=108.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++.+.+.+..++++||+++++|.+.+..  .....+++...+.++.|++.|+.|||+   .+++|+|++
T Consensus        57 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~---~~i~h~~l~  133 (260)
T cd08222          57 SKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQ---RRILHRDLK  133 (260)
T ss_pred             HhCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH---cCccccCCC
Confidence            567899999999999988899999999999999988753  223467889999999999999999997   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+|++++. +.++++|||.+...                  |+......++.++|+||+|+++|+++++..++..
T Consensus       134 ~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~  207 (260)
T cd08222         134 AKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEG  207 (260)
T ss_pred             hhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999975 56899999865321                  2222334567789999999999999998777653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.4e-24  Score=144.22  Aligned_cols=131  Identities=24%  Similarity=0.223  Sum_probs=111.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+..++..+++||++++++|.+++...  ..+++.....++.|++.++.++|+   .+++|+|++|.
T Consensus        48 ~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lh~---~~~~H~~l~p~  122 (250)
T cd05123          48 SRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKE--GRFSEERARFYAAEIVLALEYLHS---LGIIYRDLKPE  122 (250)
T ss_pred             HHcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcc
Confidence            5678999999999999999999999999999999998544  357889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccc------------------cccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLLG------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++..+.++++|||......                  +.......+.++|+||||+++|+++++..|+...
T Consensus       123 ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~  196 (250)
T cd05123         123 NILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAE  196 (250)
T ss_pred             eEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            9999999999999998654322                  1222334567899999999999999988777543

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.90  E-value=8.9e-25  Score=147.25  Aligned_cols=131  Identities=21%  Similarity=0.268  Sum_probs=110.9

Q ss_pred             CCCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.++ |+||+++++++..++..+++||++++++|.+.+.+.  ..+++.....++.|++.++.+||+   .+++|+|++|
T Consensus        56 ~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~ql~~~l~~Lh~---~~~~H~dl~~  130 (280)
T cd05581          56 TRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKY--GSLDEKCTRFYAAEILLALEYLHS---KGIIHRDLKP  130 (280)
T ss_pred             HhcccCCCchhHHHHhcCCceEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCH
Confidence            3566 999999999999999999999999999999999654  368899999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc--------------------------------------cCCCCCCCcccchhhhh
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR--------------------------------------ILPAKLTEKSDVYSFGV  122 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~Di~s~G~  122 (143)
                      +||+++.++.++++|||........                                      .....++.++|+||+|+
T Consensus       131 ~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~  210 (280)
T cd05581         131 ENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGC  210 (280)
T ss_pred             HHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHH
Confidence            9999999999999999875432211                                      12234567899999999


Q ss_pred             hhhccccccCCCCcc
Q 041845          123 LCARPAMLPMAENEQ  137 (143)
Q Consensus       123 ~~~~~~~~~~~~~~~  137 (143)
                      ++++++++..|+...
T Consensus       211 ~l~~l~~g~~p~~~~  225 (280)
T cd05581         211 IIYQMLTGKPPFRGS  225 (280)
T ss_pred             HHHHHHhCCCCCCCc
Confidence            999999987776643

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.90  E-value=2.1e-24  Score=147.48  Aligned_cols=130  Identities=27%  Similarity=0.328  Sum_probs=104.4

Q ss_pred             CCCCCCCCcceeeEEeecCC--------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK--------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~--------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      |+.++|+||+++++.+.+..        .+++++||+.. ++...+.. ....+++..+..++.|++.|+.|||+   .+
T Consensus        61 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~-~l~~~~~~-~~~~~~~~~~~~i~~~l~~al~~lH~---~~  135 (311)
T cd07866          61 LKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDH-DLSGLLEN-PSVKLTESQIKCYMLQLLEGINYLHE---NH  135 (311)
T ss_pred             HHhcCCCCccchhhheecccccccccCceEEEEEecCCc-CHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            35689999999999875433        46899999975 77776643 23468899999999999999999998   89


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhcc-----------------------------ccccCC-CCCCCcccchhhhh
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRLL-----------------------------GSRILP-AKLTEKSDVYSFGV  122 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~~-----------------------------~~~~~~-~~~~~~~Di~s~G~  122 (143)
                      ++|+|++|+||++++++.+++.|||.+...                             |+.... ..++.++|+||+||
T Consensus       136 i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~  215 (311)
T cd07866         136 ILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGC  215 (311)
T ss_pred             eecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHH
Confidence            999999999999999999999999866421                             121222 24678899999999


Q ss_pred             hhhccccccCCCC
Q 041845          123 LCARPAMLPMAEN  135 (143)
Q Consensus       123 ~~~~~~~~~~~~~  135 (143)
                      ++|+|+++..++.
T Consensus       216 il~el~~g~~~~~  228 (311)
T cd07866         216 VFAEMFTRRPILQ  228 (311)
T ss_pred             HHHHHHhCCCCCC
Confidence            9999999876664

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.90  E-value=1.9e-24  Score=145.91  Aligned_cols=131  Identities=24%  Similarity=0.324  Sum_probs=109.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++++.+.+..++++|+++ ++|.+.+.+.. ..+++..+..++.|++.++.+||+   .+++|+|++|.
T Consensus        53 ~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~---~~i~H~~l~~~  127 (282)
T cd07829          53 KELKHPNIVKLLDVIHTERKLYLVFEYCD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHS---HRILHRDLKPQ  127 (282)
T ss_pred             HhcCCCCHHHHHhhhhcCCceEEEecCcC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChh
Confidence            56789999999999999999999999997 59999985542 468889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCC-CCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPA-KLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~-~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                  |+..... .++.++|+||+|+++|+++++..++...
T Consensus       128 ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  202 (282)
T cd07829         128 NILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGD  202 (282)
T ss_pred             eEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence            999999999999999875422                  1112222 5677899999999999999987766543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-24  Score=145.31  Aligned_cols=128  Identities=21%  Similarity=0.243  Sum_probs=106.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      .|+||++++++|+++..+|+|||-+.+|+|.+.+.++  ..|.+..+..+..+|+.|+.+||.   ++|.|||+||+|||
T Consensus       134 gh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~~~--~~F~E~EAs~vvkdia~aLdFlH~---kgIAHRDlKPENiL  208 (463)
T KOG0607|consen  134 GHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQKR--KHFNEREASRVVKDIASALDFLHT---KGIAHRDLKPENIL  208 (463)
T ss_pred             CCccHHHHHHHhcccceEEEEEecccCchHHHHHHHh--hhccHHHHHHHHHHHHHHHHHHhh---cCcccccCCcccee
Confidence            5999999999999999999999999999999999654  478899999999999999999997   99999999999999


Q ss_pred             EcCCC---cccccccchhhccc--------------------cccC----------CCCCCCcccchhhhhhhhcccccc
Q 041845           85 LDENW---VAKHSRERQLRLLG--------------------SRIL----------PAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        85 ~~~~~---~~k~~~~~~~~~~~--------------------~~~~----------~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      ..+..   -+|+.||.++....                    +.+.          ..-|+++-|.||+|+++|-|+.|.
T Consensus       209 C~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGY  288 (463)
T KOG0607|consen  209 CESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGY  288 (463)
T ss_pred             ecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCC
Confidence            97653   46888876543110                    0011          124678899999999999999988


Q ss_pred             CCCCcc
Q 041845          132 MAENEQ  137 (143)
Q Consensus       132 ~~~~~~  137 (143)
                      .||...
T Consensus       289 pPFvG~  294 (463)
T KOG0607|consen  289 PPFVGH  294 (463)
T ss_pred             CCccCc
Confidence            887653

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.90  E-value=1.9e-24  Score=149.10  Aligned_cols=130  Identities=25%  Similarity=0.331  Sum_probs=108.0

Q ss_pred             CCCCCCCCcceeeEEeecCC-----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVENK-----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~-----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |+.++|+||+++.+++....     .++++|||++ ++|.+.+.+.  ..+++.....++.|++.|+.+||+   .+++|
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~--~~l~~~~~~~i~~~l~~~l~~LH~---~gi~H  126 (330)
T cd07834          53 LRHLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TDLHKVIKSP--QPLTDDHIQYFLYQILRGLKYLHS---ANVIH  126 (330)
T ss_pred             HHhcCCcchhhhhhhhcccCcccccceEEEecchh-hhHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHh---CCeec
Confidence            35678999999999988765     7899999997 4888888543  378889999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc---------------------ccccCCC-CCCCcccchhhhhhhhccccccCC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL---------------------GSRILPA-KLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~-~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      +|++|.||+++.++.++++|||.+...                     |+.+... .++.++|+||+|+++|+|+++..+
T Consensus       127 ~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~p  206 (330)
T cd07834         127 RDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPL  206 (330)
T ss_pred             CCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999865432                     2222223 567889999999999999998777


Q ss_pred             CCc
Q 041845          134 ENE  136 (143)
Q Consensus       134 ~~~  136 (143)
                      +..
T Consensus       207 f~~  209 (330)
T cd07834         207 FPG  209 (330)
T ss_pred             cCC
Confidence            653

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.90  E-value=4.9e-24  Score=144.11  Aligned_cols=130  Identities=24%  Similarity=0.295  Sum_probs=108.0

Q ss_pred             CCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++|+|++++++++...  +..++++||+++ ++...+... ...+++..+..++.|++.|+.+||+   .+++|+|++
T Consensus        53 ~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH~---~~~~h~dl~  127 (287)
T cd07840          53 QKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLDSP-EVKFTESQIKCYMKQLLEGLQYLHS---NGILHRDIK  127 (287)
T ss_pred             HhccCCCeeeheeeEecCCCCcEEEEeccccc-cHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCc
Confidence            567899999999999877  789999999975 888887543 2467889999999999999999997   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc-------------------ccccC-CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL-------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |.||++++++.++++|||.....                   |+... ...++.++|+||||+++|+|+++..|+..
T Consensus       128 p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~  204 (287)
T cd07840         128 GSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQG  204 (287)
T ss_pred             HHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999865422                   11111 12457889999999999999998766643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.90  E-value=7.1e-24  Score=146.45  Aligned_cols=129  Identities=26%  Similarity=0.351  Sum_probs=105.2

Q ss_pred             CCCCCCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |+.++||||+++.+++.. ....++++||+. ++|.+.+..   ..++......++.|++.|+.|||+   .+++|+|++
T Consensus        63 l~~l~hpniv~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~---~~iiH~dl~  135 (328)
T cd07856          63 LKHLRHENIISLSDIFISPLEDIYFVTELLG-TDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHS---AGVVHRDLK  135 (328)
T ss_pred             HHhcCCCCeeeEeeeEecCCCcEEEEeehhc-cCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCC
Confidence            356899999999999875 557889999984 589887743   256777788899999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc---------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRL---------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |.|++++.++.++++|||.+..               +|+.+.. ..++.++|+||+|+++|+++++..+++.
T Consensus       136 p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~  208 (328)
T cd07856         136 PSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPG  208 (328)
T ss_pred             HHHEeECCCCCEEeCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999986542               1222222 3568899999999999999998776654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.90  E-value=6.6e-24  Score=144.53  Aligned_cols=128  Identities=26%  Similarity=0.335  Sum_probs=104.8

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      .|+||+++++++.++...+++|||+. +++.+..... ...+++.....++.|++.++.|||+  ..+++|+|++|+||+
T Consensus        72 ~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~--~~~i~H~dl~p~nil  147 (296)
T cd06618          72 DCPYIVKCYGYFITDSDVFICMELMS-TCLDKLLKRI-QGPIPEDILGKMTVAIVKALHYLKE--KHGVIHRDVKPSNIL  147 (296)
T ss_pred             CCCchHhhheeeecCCeEEEEeeccC-cCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh--hCCEecCCCcHHHEE
Confidence            59999999999999999999999985 4777766432 3467888889999999999999996  248999999999999


Q ss_pred             EcCCCcccccccchhhcc-----------------ccccCC----CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDENWVAKHSRERQLRLL-----------------GSRILP----AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~-----------------~~~~~~----~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ++.++.++++|||.+...                 |+....    ..++.++|+||||+++|+|+++..|+..
T Consensus       148 l~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  220 (296)
T cd06618         148 LDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKN  220 (296)
T ss_pred             EcCCCCEEECccccchhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCc
Confidence            999999999999875421                 221211    2367789999999999999998877754

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.90  E-value=7.5e-24  Score=147.21  Aligned_cols=127  Identities=21%  Similarity=0.274  Sum_probs=103.3

Q ss_pred             CCCCCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      ++++|+||+++++++...      ...+++++++ +++|.+.+..   ..+++..+..++.|++.|+.|||+   .+++|
T Consensus        71 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH  143 (345)
T cd07877          71 KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHS---ADIIH  143 (345)
T ss_pred             HHcCCCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeee
Confidence            567999999999988643      3467888887 6799887743   257888899999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc---------------ccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL---------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~---------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +|++|+||+++.++.++++|||.+...               |+.... ..++.++|+||+||++|+|+++..|+.
T Consensus       144 ~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~  219 (345)
T cd07877         144 RDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFP  219 (345)
T ss_pred             cCCChHHEEEcCCCCEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999875421               222222 346788999999999999999877664

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.89  E-value=1.1e-23  Score=146.37  Aligned_cols=129  Identities=22%  Similarity=0.280  Sum_probs=105.9

Q ss_pred             CCCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      |+.++||||+++++++....      ..++++|++ +++|...+..   ..+++..+..++.|++.|+.|||+   .+++
T Consensus        68 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~---~gi~  140 (343)
T cd07880          68 LKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHA---AGII  140 (343)
T ss_pred             HHhcCCCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCee
Confidence            45789999999999987654      358999998 6689887743   367889999999999999999997   8999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhccc---------------cccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRLLG---------------SRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~~~---------------~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+|++|+||+++.++.+++.|||.+....               +.... ..++.++|+||+|+++|+++++..|+..
T Consensus       141 H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~  218 (343)
T cd07880         141 HRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKG  218 (343)
T ss_pred             cCCCCHHHEEEcCCCCEEEeecccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999764321               11211 2467889999999999999998877753

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.89  E-value=7.5e-24  Score=147.04  Aligned_cols=128  Identities=22%  Similarity=0.283  Sum_probs=104.1

Q ss_pred             CCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++....      ..++++||+.. ++....    ...+++..+..++.|++.|+.|||+   .+++|
T Consensus        69 ~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~----~~~~~~~~~~~~~~qi~~aL~~LH~---~~i~H  140 (342)
T cd07879          69 KHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT-DLQKIM----GHPLSEDKVQYLVYQMLCGLKYIHS---AGIIH  140 (342)
T ss_pred             HhcCCCCccchhheecccccCCCCceEEEEeccccc-CHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHH---CCccc
Confidence            5678999999999987543      35899999864 777655    1257788889999999999999997   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc---------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL---------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|++|+||+++.++.++++|||.+..               +|+.... ..++.++|+|||||++|||+++..|+...
T Consensus       141 ~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~  218 (342)
T cd07879         141 RDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  218 (342)
T ss_pred             CCCCHHHEEECCCCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999987642               2222222 34678899999999999999988777643

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.89  E-value=8.5e-24  Score=146.48  Aligned_cols=129  Identities=22%  Similarity=0.287  Sum_probs=106.0

Q ss_pred             CCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++|+||+++++++...     ...++++||+. ++|.+.+...  ..+++.....++.|++.|+.|||+   .+++|+
T Consensus        59 ~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~~i~H~  132 (337)
T cd07858          59 RHLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQIIRSS--QTLSDDHCQYFLYQLLRGLKYIHS---ANVLHR  132 (337)
T ss_pred             HhcCCCCccchHHheecccccccCcEEEEEeCCC-CCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCEecC
Confidence            567899999999987643     34799999996 5898888543  468889999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |++|+||+++.++.++++|||.+...                  |+.... ..++.++|+|||||++|+|+++..|+..
T Consensus       133 dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  211 (337)
T cd07858         133 DLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPG  211 (337)
T ss_pred             CCCHHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999976432                  111221 3467899999999999999998777654

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.89  E-value=7.1e-24  Score=150.39  Aligned_cols=125  Identities=19%  Similarity=0.217  Sum_probs=105.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhc-CCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMA-RGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .|+||++++++|++++++|++||--. +.+|.+++..  +..+++..++.++.|++.++++||+   .+|+|||+|-+|+
T Consensus       627 sH~NIlKlLdfFEddd~yyl~te~hg~gIDLFd~IE~--kp~m~E~eAk~IFkQV~agi~hlh~---~~ivhrdikdenv  701 (772)
T KOG1152|consen  627 SHENILKLLDFFEDDDYYYLETEVHGEGIDLFDFIEF--KPRMDEPEAKLIFKQVVAGIKHLHD---QGIVHRDIKDENV  701 (772)
T ss_pred             CccchhhhhheeecCCeeEEEecCCCCCcchhhhhhc--cCccchHHHHHHHHHHHhccccccc---cCceecccccccE
Confidence            49999999999999999999999753 5599999943  3478899999999999999999998   9999999999999


Q ss_pred             EEcCCCcccccccchhhcc----------------ccccCCCCC-CCcccchhhhhhhhccccccCCC
Q 041845           84 LLDENWVAKHSRERQLRLL----------------GSRILPAKL-TEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~~----------------~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      .++.+|.+|+.|||.+.+.                |+.+.+++| .+.-|||++|+++|.+.+..-|.
T Consensus       702 ivd~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpy  769 (772)
T KOG1152|consen  702 IVDSNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPY  769 (772)
T ss_pred             EEecCCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCC
Confidence            9999999999999976532                222334444 46689999999999999865543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=5.9e-24  Score=139.78  Aligned_cols=125  Identities=25%  Similarity=0.341  Sum_probs=102.8

Q ss_pred             CCCCCCCcceeeEEeecCC-----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVENK-----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~-----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      ..++|.|+...++...-..     .+|+++|.+.. +|..++.+  ...++-..++..++||+.+++|||+   .+|.||
T Consensus       107 cfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQS-DLHKIIVS--PQ~Ls~DHvKVFlYQILRGLKYLHs---A~ILHR  180 (449)
T KOG0664|consen  107 SSFRHDNVLSLLDILQPANPSFFQELYVLTELMQS-DLHKIIVS--PQALTPDHVKVFVYQILRGLKYLHT---ANILHR  180 (449)
T ss_pred             HhhccccHHHHHHhcCCCCchHHHHHHHHHHHHHh-hhhheecc--CCCCCcchhhhhHHHHHhhhHHHhh---cchhhc
Confidence            4578999999988775442     48999999965 99988843  4577778889999999999999998   999999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhccc-------------------cc-cCCCCCCCcccchhhhhhhhccccccC
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRLLG-------------------SR-ILPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~~~-------------------~~-~~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      |+||.|.|++++...|++|||+++...                   +- +....|+.++||||.||++.|++-...
T Consensus       181 DIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrI  256 (449)
T KOG0664|consen  181 DIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKI  256 (449)
T ss_pred             cCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhh
Confidence            999999999999999999999986322                   11 223478999999999999999765443

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.88  E-value=1.9e-24  Score=141.15  Aligned_cols=131  Identities=24%  Similarity=0.251  Sum_probs=104.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhh---cCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLY---NNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      ++=+.||||+++|.+...+.-|+-||.++- |+..+-.   +.....+++...-.+..-.+.|+.||-.  ...++|||+
T Consensus       118 ks~~cp~IVkfyGa~F~EGdcWiCMELMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDv  194 (361)
T KOG1006|consen  118 KSSNCPNIVKFYGALFSEGDCWICMELMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKE--ELKIIHRDV  194 (361)
T ss_pred             hhcCCcHHHHHhhhhhcCCceeeeHHHHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccC
Confidence            344679999999999999999999999964 7665432   2234466777666666667889999986  567999999


Q ss_pred             CCCcEEEcCCCcccccccchhh-----------------ccccccCC--CCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLR-----------------LLGSRILP--AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+|||++..|.+|++|||.+.                 ++|+++.+  ..|+.++|+||+|++++|.+||.+|..
T Consensus       195 KPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr  270 (361)
T KOG1006|consen  195 KPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYR  270 (361)
T ss_pred             ChhheEEecCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcc
Confidence            9999999999999999999763                 34444433  247889999999999999999988865

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.88  E-value=9.6e-24  Score=146.50  Aligned_cols=129  Identities=22%  Similarity=0.316  Sum_probs=102.2

Q ss_pred             CCCCCCCCcceeeEEeecC--------------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            1 LSNLRHRHLVSLIGHHVEN--------------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--------------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      |+.++||||+++++++...              ...++++||++ ++|.+.+..   ..+++..++.++.|++.|+.|||
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH  131 (342)
T cd07854          56 IRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIH  131 (342)
T ss_pred             HHhcCCCcchhhHhhhcccccccccccccccccceEEEEeeccc-ccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999876543              34789999997 588887743   35788999999999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcC-CCcccccccchhhcc---------------------ccccC-CCCCCCcccchhhhhh
Q 041845           67 TGTRNTIIHRDVKSTNILLDE-NWVAKHSRERQLRLL---------------------GSRIL-PAKLTEKSDVYSFGVL  123 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~-~~~~k~~~~~~~~~~---------------------~~~~~-~~~~~~~~Di~s~G~~  123 (143)
                      +   .+++|+|++|+||+++. ++.++++|||.+...                     |+... ...++.++|+|||||+
T Consensus       132 ~---~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvi  208 (342)
T cd07854         132 S---ANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCI  208 (342)
T ss_pred             h---CCcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHH
Confidence            7   89999999999999974 456789999865321                     12111 2346778999999999


Q ss_pred             hhccccccCCCCc
Q 041845          124 CARPAMLPMAENE  136 (143)
Q Consensus       124 ~~~~~~~~~~~~~  136 (143)
                      +|+|+++..|+..
T Consensus       209 l~el~~g~~pf~~  221 (342)
T cd07854         209 FAEMLTGKPLFAG  221 (342)
T ss_pred             HHHHHhCCCCCCC
Confidence            9999998877753

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.88  E-value=2.9e-23  Score=140.80  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=105.8

Q ss_pred             cceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCC
Q 041845            9 LVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN   88 (143)
Q Consensus         9 iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~   88 (143)
                      ++++.++|.-.+..|+|+|.+ +.|+.+++..+...+++...+..+..|++.++++||+   .+++|-||||+||++-+.
T Consensus       153 cv~m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~---~kl~HTDLKPENILfvss  228 (415)
T KOG0671|consen  153 CVQMRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHD---LKLTHTDLKPENILFVSS  228 (415)
T ss_pred             EEeeehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHh---cceeecCCChheEEEecc
Confidence            567788888899999999988 4599999988888899999999999999999999998   999999999999999433


Q ss_pred             --------------------Ccccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCC
Q 041845           89 --------------------WVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        89 --------------------~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                                          ..+++.|||.++               .+|+.+++-.++.+.|+||+||++.|+.||..-
T Consensus       229 ~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~L  308 (415)
T KOG0671|consen  229 EYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETL  308 (415)
T ss_pred             ceEEEeccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeecccee
Confidence                                235678999875               356667778899999999999999999998764


Q ss_pred             CC
Q 041845          134 EN  135 (143)
Q Consensus       134 ~~  135 (143)
                      |.
T Consensus       309 Fq  310 (415)
T KOG0671|consen  309 FQ  310 (415)
T ss_pred             cc
Confidence            44

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.88  E-value=9.3e-24  Score=146.62  Aligned_cols=128  Identities=22%  Similarity=0.262  Sum_probs=105.7

Q ss_pred             CCCCCCCcceeeEEeecCCc------hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVENKE------MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~------~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++|+|++++.+++.....      .++++||+ +++|.+.+..   ..+++..+..++.|++.|+.|||+   .+++|
T Consensus        69 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~---~gi~H  141 (343)
T cd07851          69 KHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHS---AGIIH  141 (343)
T ss_pred             HhccCCCHHHHHHHhhccccccccccEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeec
Confidence            56799999999988865544      89999998 5699888843   368889999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhccc---------------cccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLLG---------------SRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~~---------------~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|++|+||+++.++.++++|||.+....               +.... ..++.++|+||+|+++|+++++..|+..
T Consensus       142 ~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~  218 (343)
T cd07851         142 RDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPG  218 (343)
T ss_pred             CCCCHHHeEECCCCCEEEccccccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999998765321               11111 2467889999999999999998777653

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.88  E-value=4.5e-23  Score=142.56  Aligned_cols=128  Identities=21%  Similarity=0.266  Sum_probs=102.2

Q ss_pred             CC-CCCCcceeeEEeecC----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            3 NL-RHRHLVSLIGHHVEN----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      .+ +||||+++++.+...    ...+++++++. ++|.+.+...  ..+++.....++.|++.|+.|||+   .+++|+|
T Consensus        57 ~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~givH~d  130 (332)
T cd07857          57 HFRGHKNITCLYDMDIVFPGNFNELYLYEELME-ADLHQIIRSG--QPLTDAHFQSFIYQILCGLKYIHS---ANVLHRD  130 (332)
T ss_pred             HhcCCCChheeeeeeeeccccCCcEEEEEeccc-CCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHh---CCcccCC
Confidence            45 599999999875432    45778899886 5898888543  467889999999999999999997   8999999


Q ss_pred             CCCCcEEEcCCCcccccccchhhc----------------------cccccCC-CCCCCcccchhhhhhhhccccccCCC
Q 041845           78 VKSTNILLDENWVAKHSRERQLRL----------------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        78 l~~~nil~~~~~~~k~~~~~~~~~----------------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ++|+||+++.++.++++|||.+..                      +|+.... ..++.++|+||+|+++|+++++..|+
T Consensus       131 lkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf  210 (332)
T cd07857         131 LKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVF  210 (332)
T ss_pred             CCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCC
Confidence            999999999999999999986531                      1221222 34678899999999999999887666


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       211 ~~  212 (332)
T cd07857         211 KG  212 (332)
T ss_pred             CC
Confidence            53

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.87  E-value=4.1e-22  Score=146.52  Aligned_cols=128  Identities=27%  Similarity=0.340  Sum_probs=109.9

Q ss_pred             CCCCcceeeEEeec-----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            5 RHRHLVSLIGHHVE-----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         5 ~h~niv~~~~~~~~-----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      .|||++.++|++..     ++.+|+|||||.+|++.+.+....+..+.+..+..|++.++.++.+||.   +.++|||+|
T Consensus        74 ~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~---nkviHRDik  150 (953)
T KOG0587|consen   74 HHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHN---NKVIHRDIK  150 (953)
T ss_pred             CCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhh---cceeeeccc
Confidence            69999999999863     4689999999999999999977777888999999999999999999997   889999999


Q ss_pred             CCcEEEcCCCcccccccchhh------------------cccccc-----CCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLR------------------LLGSRI-----LPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~------------------~~~~~~-----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      -.|||++.++.+|+.|||...                  ++|+.+     ....|+..+|+||||++..||.-|+.|..
T Consensus       151 G~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~  229 (953)
T KOG0587|consen  151 GQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLC  229 (953)
T ss_pred             CceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCcc
Confidence            999999999999999999753                  122222     22356778999999999999988777654

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.4e-23  Score=134.67  Aligned_cols=125  Identities=25%  Similarity=0.325  Sum_probs=104.4

Q ss_pred             CCCCCCCcceeeEEeecC--------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            2 SNLRHRHLVSLIGHHVEN--------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~--------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      ..++|+|++.+++.|.+.        ..+++|+++|+. +|.-.+. +....+....+++++.++..++.|+|.   +.+
T Consensus        71 ~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ceh-DLaGlLs-n~~vr~sls~Ikk~Mk~Lm~GL~~iHr---~ki  145 (376)
T KOG0669|consen   71 QLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCEH-DLAGLLS-NRKVRFSLSEIKKVMKGLMNGLYYIHR---NKI  145 (376)
T ss_pred             HHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhhh-hHHHHhc-CccccccHHHHHHHHHHHHHHHHHHHH---hhH
Confidence            457899999999888532        358999999987 9999884 445688889999999999999999996   899


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhhcc-------cc---------------c-cCCCCCCCcccchhhhhhhhccccc
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLRLL-------GS---------------R-ILPAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~~~-------~~---------------~-~~~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      +|||+|+.|+|++.++..++.|||.++-.       ++               - +-...++++.|+|+.||++.||+++
T Consensus       146 lHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtr  225 (376)
T KOG0669|consen  146 LHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTR  225 (376)
T ss_pred             HhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHcc
Confidence            99999999999999999999999988421       11               1 1234678999999999999999995


Q ss_pred             c
Q 041845          131 P  131 (143)
Q Consensus       131 ~  131 (143)
                      .
T Consensus       226 s  226 (376)
T KOG0669|consen  226 S  226 (376)
T ss_pred             C
Confidence            3

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.86  E-value=2.4e-22  Score=132.36  Aligned_cols=130  Identities=28%  Similarity=0.291  Sum_probs=110.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++.+.+......++++|++++++|...+....  .++......++.+++.++.+||+   .+++|+|++|.
T Consensus        42 ~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~~i~~~  116 (244)
T smart00220       42 KKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKRG--RLSEDEARFYARQILSALEYLHS---NGIIHRDLKPE  116 (244)
T ss_pred             HhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHH---cCeecCCcCHH
Confidence            46799999999999998899999999999989999885433  37888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcccc-----------------ccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLGS-----------------RILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~~-----------------~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++..++.|||.......                 ......++.++|+||+|+++++++++..|+..
T Consensus       117 ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~  188 (244)
T smart00220      117 NILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPG  188 (244)
T ss_pred             HeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999987653322                 22234567899999999999999998766644

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.85  E-value=2e-22  Score=132.17  Aligned_cols=127  Identities=17%  Similarity=0.314  Sum_probs=101.0

Q ss_pred             CCCCcceeeEE-eecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            5 RHRHLVSLIGH-HVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         5 ~h~niv~~~~~-~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .|.||+.-+++ |++.+..++++||++.|+|.+-+..   ..+.+..-+.++.|+++|+.|+|+   ++++|||||.+||
T Consensus        79 ~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~---~GigE~~~K~v~~ql~SAi~fMHs---knlVHRdlK~eNi  152 (378)
T KOG1345|consen   79 PHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEA---AGIGEANTKKVFAQLLSAIEFMHS---KNLVHRDLKAENI  152 (378)
T ss_pred             cchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCc---ccccHHHHHHHHHHHHHHHHHhhc---cchhhcccccceE
Confidence            48899877666 5667788899999999999987732   356778889999999999999998   8999999999999


Q ss_pred             EEcCC--Ccccccccchhhccc--------------cccC----CC--CCCCcccchhhhhhhhccccccCCCCcc
Q 041845           84 LLDEN--WVAKHSRERQLRLLG--------------SRIL----PA--KLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        84 l~~~~--~~~k~~~~~~~~~~~--------------~~~~----~~--~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |+...  ..+|++|||..+-.+              ++..    .+  ...+.+|+|.||++++.++||.+|+...
T Consensus       153 Lif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka  228 (378)
T KOG1345|consen  153 LIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKA  228 (378)
T ss_pred             EEecCCccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhh
Confidence            99643  578999999764222              1111    11  2357789999999999999999998743

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=5.8e-22  Score=149.77  Aligned_cols=107  Identities=26%  Similarity=0.316  Sum_probs=87.3

Q ss_pred             CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchh
Q 041845           20 KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQL   99 (143)
Q Consensus        20 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~   99 (143)
                      ..+||-||||+...+.+++.++.... .....+.++++|+.|+.|+|+   .+++||||||.||++++.+.+|++|||++
T Consensus       669 ~~LYIQMEyCE~~ll~~iI~~N~~~~-~~d~~wrLFreIlEGLaYIH~---~giIHRDLKP~NIFLd~~~~VKIGDFGLA  744 (1351)
T KOG1035|consen  669 LILYIQMEYCEKTLLRDIIRRNHFNS-QRDEAWRLFREILEGLAYIHD---QGIIHRDLKPRNIFLDSRNSVKIGDFGLA  744 (1351)
T ss_pred             eEEEEEHhhhhhhHHHHHHHhcccch-hhHHHHHHHHHHHHHHHHHHh---CceeeccCCcceeEEcCCCCeeecccccc
Confidence            45889999999977788886543221 457789999999999999998   99999999999999999999999999987


Q ss_pred             hcc-----------------------------------cccc-C---CCCCCCcccchhhhhhhhccccc
Q 041845          100 RLL-----------------------------------GSRI-L---PAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus       100 ~~~-----------------------------------~~~~-~---~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      ...                                   .+++ .   ...|+.|+|+||+|++++||+.+
T Consensus       745 t~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP  814 (1351)
T KOG1035|consen  745 TDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP  814 (1351)
T ss_pred             hhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhcc
Confidence            631                                   1111 1   12588999999999999999975

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.85  E-value=7.9e-22  Score=128.84  Aligned_cols=131  Identities=25%  Similarity=0.277  Sum_probs=110.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++++++.+......++++|++++++|.+++..... .+++.....++.+++.++.++|+   .+++|+|+++.
T Consensus        52 ~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~---~~i~h~di~~~  127 (225)
T smart00221       52 KKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHS---LGIVHRDLKPE  127 (225)
T ss_pred             HhCCCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHH
Confidence            456899999999999988899999999999899999854431 17788889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccccc-------------------c-CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLGSR-------------------I-LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~~~-------------------~-~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |++++..+.+++.|||........                   . ....++.++|+|++|+++++++++..|++.
T Consensus       128 ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      128 NILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             HEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            999999999999999866543221                   1 223455689999999999999999888866

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.85  E-value=3.6e-22  Score=138.69  Aligned_cols=125  Identities=26%  Similarity=0.414  Sum_probs=102.0

Q ss_pred             CCCCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhc------CCCCC
Q 041845            3 NLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHT------GTRNT   72 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~------~~~~~   72 (143)
                      -++|+||+++++.-....    .+++|++|.+.|+|.+++..+   .++|.....++..++.|+.|||+      ..+.+
T Consensus       260 ~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~n---tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~  336 (534)
T KOG3653|consen  260 GMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKAN---TISWNSLCRIAESMARGLAHLHEELPRGDHHKPP  336 (534)
T ss_pred             CccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHhc---cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCc
Confidence            468999999999776444    789999999999999999654   67899999999999999999995      33457


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhc-------------------cccccCCCCC-------CCcccchhhhhhhhc
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRL-------------------LGSRILPAKL-------TEKSDVYSFGVLCAR  126 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~-------~~~~Di~s~G~~~~~  126 (143)
                      |.|||+|.+|||+..+...-+.|||++..                   +.++++.+..       -.+.||||+|.++||
T Consensus       337 IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWE  416 (534)
T KOG3653|consen  337 IAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWE  416 (534)
T ss_pred             cccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998742                   2222222211       135899999999999


Q ss_pred             cccc
Q 041845          127 PAML  130 (143)
Q Consensus       127 ~~~~  130 (143)
                      |+++
T Consensus       417 i~SR  420 (534)
T KOG3653|consen  417 IASR  420 (534)
T ss_pred             HHhh
Confidence            9873

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=4.9e-22  Score=137.22  Aligned_cols=124  Identities=27%  Similarity=0.409  Sum_probs=99.7

Q ss_pred             CCCCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhc-----CCCCCe
Q 041845            3 NLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHT-----GTRNTI   73 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~-----~~~~~i   73 (143)
                      .|+|+||+.+++.=..++    .+|+|++|-+.|||.+++.+   ..++.....+++..++.++++||.     -.+..|
T Consensus       261 mLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r---~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaI  337 (513)
T KOG2052|consen  261 MLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNR---NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAI  337 (513)
T ss_pred             HhccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhh---ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchh
Confidence            479999999988755433    58999999999999999954   378889999999999999999993     123468


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhh---------------------ccccccCCCCCC-------Ccccchhhhhhhh
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLR---------------------LLGSRILPAKLT-------EKSDVYSFGVLCA  125 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~---------------------~~~~~~~~~~~~-------~~~Di~s~G~~~~  125 (143)
                      .|||||..|||+.+++..-|.|+|++.                     +++++.+.+...       ..+||||||.++|
T Consensus       338 AHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlW  417 (513)
T KOG2052|consen  338 AHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLW  417 (513)
T ss_pred             hccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999988763                     333333333332       4589999999999


Q ss_pred             cccc
Q 041845          126 RPAM  129 (143)
Q Consensus       126 ~~~~  129 (143)
                      |++-
T Consensus       418 Eiar  421 (513)
T KOG2052|consen  418 EIAR  421 (513)
T ss_pred             HHHH
Confidence            9764

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.3e-21  Score=132.12  Aligned_cols=129  Identities=19%  Similarity=0.167  Sum_probs=112.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||.+|-++.+|.+.+.+++|.||.++|+|.-.+++  ...+++..+..+...|..|+.|||+   ++|+.||+|..|+|
T Consensus       309 n~pflvglhscfqtesrlffvieyv~ggdlmfhmqr--qrklpeeharfys~ei~lal~flh~---rgiiyrdlkldnvl  383 (593)
T KOG0695|consen  309 NNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR--QRKLPEEHARFYSAEICLALNFLHE---RGIIYRDLKLDNVL  383 (593)
T ss_pred             CCCeEEehhhhhcccceEEEEEEEecCcceeeehhh--hhcCcHHHhhhhhHHHHHHHHHHhh---cCeeeeeccccceE
Confidence            689999999999999999999999999999776643  3478899999999999999999998   99999999999999


Q ss_pred             EcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           85 LDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      ++..|.+|++|.|.+.                  .+|+-+.++.|...+|+|++|++++||..+..|++...
T Consensus       384 ldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivg  455 (593)
T KOG0695|consen  384 LDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVG  455 (593)
T ss_pred             EccCCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceec
Confidence            9999999999987642                  33444567788999999999999999999988887543

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.83  E-value=6.4e-21  Score=139.75  Aligned_cols=122  Identities=20%  Similarity=0.233  Sum_probs=96.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC-CCCCC-cHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN-HKPPL-QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      +|||||++++.-.++.++||..|.|.. +|.+++... ..... ..........|++.|+.+||+   .+++||||||.|
T Consensus       561 ~H~NviRyyc~E~d~qF~YIalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs---l~iVHRDLkPQN  636 (903)
T KOG1027|consen  561 EHPNVIRYYCSEQDRQFLYIALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS---LKIVHRDLKPQN  636 (903)
T ss_pred             CCCceEEEEeeccCCceEEEEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh---cccccccCCCce
Confidence            699999999998899999999999976 999999542 11111 114457788999999999998   899999999999


Q ss_pred             EEEcCC-----Ccccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhccccc
Q 041845           83 ILLDEN-----WVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        83 il~~~~-----~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      ||+...     ..++++|||++.-                     +|+.+.....+.++||+|+||++|+.+++
T Consensus       637 ILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltg  710 (903)
T KOG1027|consen  637 ILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTG  710 (903)
T ss_pred             EEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecC
Confidence            999862     4678999997642                     22223334456689999999999999885

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.83  E-value=5e-21  Score=140.20  Aligned_cols=116  Identities=24%  Similarity=0.270  Sum_probs=85.9

Q ss_pred             cCCchhhhHhhhcCCCHHHHhhcCCCC------------------CCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845           18 ENKEMILVYDCMARGTLRDHLYNNHKP------------------PLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus        18 ~~~~~~lv~e~~~~~~l~~~~~~~~~~------------------~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      .....++++||+.+++|.+++......                  ......+..++.|++.|+.|||+   .+++|||||
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~---~gIiHRDLK  282 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS---TGIVHRDVK  282 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH---CCEEeCcCC
Confidence            456789999999999999888543210                  01123456789999999999998   899999999


Q ss_pred             CCcEEEcC-CCcccccccchhhcc-------------------ccccCC----------------------CCCCCcccc
Q 041845           80 STNILLDE-NWVAKHSRERQLRLL-------------------GSRILP----------------------AKLTEKSDV  117 (143)
Q Consensus        80 ~~nil~~~-~~~~k~~~~~~~~~~-------------------~~~~~~----------------------~~~~~~~Di  117 (143)
                      |+|||++. ++.+|++|||++...                   |+.+..                      ..++.++||
T Consensus       283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DV  362 (566)
T PLN03225        283 PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDI  362 (566)
T ss_pred             HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCccc
Confidence            99999985 578999999987421                   111110                      123345699


Q ss_pred             hhhhhhhhccccccCCCCc
Q 041845          118 YSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       118 ~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+||++|||++++++.+.
T Consensus       363 wSlGviL~el~~~~~~~~~  381 (566)
T PLN03225        363 YSAGLIFLQMAFPNLRSDS  381 (566)
T ss_pred             HHHHHHHHHHHhCcCCCch
Confidence            9999999999997766543

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.83  E-value=5.8e-21  Score=122.80  Aligned_cols=127  Identities=18%  Similarity=0.198  Sum_probs=100.9

Q ss_pred             CCCC-CCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            2 SNLR-HRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         2 ~~l~-h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +.+. ||||++++++..++  ....+++|+..+.+.....     ..++...+..++.+++.|+.|||+   .||.|||+
T Consensus        87 ~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly-----~tl~d~dIryY~~elLkALdyCHS---~GImHRDV  158 (338)
T KOG0668|consen   87 QNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLY-----PTLTDYDIRYYIYELLKALDYCHS---MGIMHRDV  158 (338)
T ss_pred             HhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHh-----hhhchhhHHHHHHHHHHHHhHHHh---cCcccccC
Confidence            3454 99999999998764  4678999999987776655     245566778899999999999998   99999999


Q ss_pred             CCCcEEEcCC-Ccccccccchhhcccccc------------------CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDEN-WVAKHSRERQLRLLGSRI------------------LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~-~~~k~~~~~~~~~~~~~~------------------~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||.|++++.. -..++.|.|++.+..+..                  .-..|+-.-|+|||||++..|++..-||--
T Consensus       159 KPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFh  235 (338)
T KOG0668|consen  159 KPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFH  235 (338)
T ss_pred             CcceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccC
Confidence            9999999855 457889999887654321                  123466788999999999999997666543

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.80  E-value=5.2e-20  Score=132.71  Aligned_cols=121  Identities=20%  Similarity=0.189  Sum_probs=90.4

Q ss_pred             cceeeEEeec--------CCchhhhHhhhcCCCHHHHhhcCC----------------------CCCCcHHHHHHHHHHH
Q 041845            9 LVSLIGHHVE--------NKEMILVYDCMARGTLRDHLYNNH----------------------KPPLQWMWRLKICIGA   58 (143)
Q Consensus         9 iv~~~~~~~~--------~~~~~lv~e~~~~~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~i   58 (143)
                      +++++++|..        ....++|+||+++++|.+.+....                      ...+++..+..++.|+
T Consensus       239 ~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql  318 (507)
T PLN03224        239 CAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQV  318 (507)
T ss_pred             hhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHH
Confidence            4667776642        356899999999999998875321                      1123456788899999


Q ss_pred             HHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhc-------------------cccccCCCC---------
Q 041845           59 ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL-------------------LGSRILPAK---------  110 (143)
Q Consensus        59 ~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~---------  110 (143)
                      +.++.|+|+   .+++|||+||+||+++.++.+++.|||.+..                   .||.+....         
T Consensus       319 ~~aL~~lH~---~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~  395 (507)
T PLN03224        319 LTGLRKLHR---IGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPA  395 (507)
T ss_pred             HHHHHHHHH---CCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchhh
Confidence            999999997   8999999999999999999999999987632                   112111110         


Q ss_pred             -----------C--CCcccchhhhhhhhccccccC
Q 041845          111 -----------L--TEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus       111 -----------~--~~~~Di~s~G~~~~~~~~~~~  132 (143)
                                 +  ..+.|+||+||++++|+++..
T Consensus       396 ~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l  430 (507)
T PLN03224        396 MAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPEL  430 (507)
T ss_pred             hhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCC
Confidence                       1  124699999999999998654

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.79  E-value=5.3e-20  Score=126.11  Aligned_cols=132  Identities=21%  Similarity=0.305  Sum_probs=103.9

Q ss_pred             CCCCCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcCC------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            2 SNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNNH------KPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      ..+.|||+.++.+++.+ ....++...+..-|+|..++....      ...++..+...++.|++.|+.|||.   .+++
T Consensus       342 y~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~---~~Vi  418 (563)
T KOG1024|consen  342 YGASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHN---HGVI  418 (563)
T ss_pred             hcCcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHh---cCcc
Confidence            34679999999999865 455666777777889999997321      1344556778899999999999997   8999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhcccc-ccCC
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM-LPMA  133 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~  133 (143)
                      |.|+..+|+++++.-.+|++|-.+.+                    +..+.+..+.|+.++|+||||+++||++| +..|
T Consensus       419 HkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~P  498 (563)
T KOG1024|consen  419 HKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLP  498 (563)
T ss_pred             cchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999866554                    12233455678999999999999999998 4455


Q ss_pred             CCc
Q 041845          134 ENE  136 (143)
Q Consensus       134 ~~~  136 (143)
                      -.+
T Consensus       499 yae  501 (563)
T KOG1024|consen  499 YAE  501 (563)
T ss_pred             ccc
Confidence            443

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.79  E-value=2.2e-19  Score=115.66  Aligned_cols=122  Identities=37%  Similarity=0.494  Sum_probs=102.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|++++++++.+......++++|++++++|.+++.... ..++......++.+++.++.++|+   .+++|+|++|.
T Consensus        46 ~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~---~~~~H~dl~~~  121 (215)
T cd00180          46 KKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPE  121 (215)
T ss_pred             HhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCHh
Confidence            56789999999999998889999999999899999985432 357788899999999999999998   89999999999


Q ss_pred             cEEEcC-CCcccccccchhhcccc------------------ccCCC-CCCCcccchhhhhhhhcc
Q 041845           82 NILLDE-NWVAKHSRERQLRLLGS------------------RILPA-KLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        82 nil~~~-~~~~k~~~~~~~~~~~~------------------~~~~~-~~~~~~Di~s~G~~~~~~  127 (143)
                      ||+++. .+.++++||+.......                  ..... ..+.++|+|++|++++++
T Consensus       122 ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         122 NILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             hEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH
Confidence            999998 88999999876543221                  11122 556789999999999876

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.78  E-value=2e-19  Score=134.32  Aligned_cols=96  Identities=22%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+||+++++++.....+++||||+.+++|.+++...  ..+.+..++.++.|++.|+.|||+   .+|+|+||||+
T Consensus        59 ~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~li~~~--~~l~~~~~~~i~~qil~aL~yLH~---~gIiHrDLKP~  133 (669)
T cd05610          59 ALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIY--GYFDEEMAVKYISEVALALDYLHR---HGIIHRDLKPD  133 (669)
T ss_pred             HhcCCCCcCeEEEEEEECCEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCccHH
Confidence            4578999999999999999999999999999999988543  357788889999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc
Q 041845           82 NILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~  102 (143)
                      |||++.++.++++|||++...
T Consensus       134 NILl~~~g~vkL~DFGls~~~  154 (669)
T cd05610         134 NMLISNEGHIKLTDFGLSKVT  154 (669)
T ss_pred             HEEEcCCCCEEEEeCCCCccc
Confidence            999999999999999987643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.77  E-value=9.3e-19  Score=110.94  Aligned_cols=93  Identities=29%  Similarity=0.325  Sum_probs=76.4

Q ss_pred             CCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhh-----------
Q 041845           32 GTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR-----------  100 (143)
Q Consensus        32 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~-----------  100 (143)
                      |+|.+++.+. +..+++..+..++.|++.|+.|||+   .+      ||+||+++.++.+++  ||.+.           
T Consensus         1 GsL~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~lH~---~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~g~~   68 (176)
T smart00750        1 VSLADILEVR-GRPLNEEEIWAVCLQCLRALRELHR---QA------KSGNILLTWDGLLKL--DGSVAFKTPEQSRVDP   68 (176)
T ss_pred             CcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHh---cC------CcccEeEcCccceee--ccceEeeccccCCCcc
Confidence            5888888543 3468999999999999999999997   54      999999999888887  66543           


Q ss_pred             --ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845          101 --LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       101 --~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                        .+|+.+....++.++|||||||++|||+++..|+..
T Consensus        69 ~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~  106 (176)
T smart00750       69 YFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNE  106 (176)
T ss_pred             cccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccc
Confidence              344555667788999999999999999998888754

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.77  E-value=4.4e-19  Score=126.00  Aligned_cols=136  Identities=32%  Similarity=0.526  Sum_probs=114.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe-eecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTI-IHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i-~h~~l~   79 (143)
                      |+++.|.|+.+++|.+.++...+++.+||..|+|.+.+.. ....+++.......++++.++.|+|+   .++ .|+.++
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~-~~~~~d~~F~~s~~rdi~~Gl~ylh~---s~i~~hg~l~   76 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSN-EDIKLDYFFILSFIRDISKGLAYLHN---SPIGYHGALK   76 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhc-cccCccHHHHHHHHHHHHHHHHHHhc---Ccceeeeeec
Confidence            6889999999999999999999999999999999999954 45678889999999999999999997   444 899999


Q ss_pred             CCcEEEcCCCcccccccchhhcccc-------------------ccCCC--------CCCCcccchhhhhhhhccccccC
Q 041845           80 STNILLDENWVAKHSRERQLRLLGS-------------------RILPA--------KLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~~~-------------------~~~~~--------~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      ..|++++..|.+|++|||+.....+                   +....        ..+++.|+||||++++|+++..-
T Consensus        77 s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   77 SSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG  156 (484)
T ss_pred             cccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence            9999999999999999998765421                   11111        24678999999999999999877


Q ss_pred             CCCccccc
Q 041845          133 AENEQEVE  140 (143)
Q Consensus       133 ~~~~~~~~  140 (143)
                      |++.....
T Consensus       157 ~~~~~~~~  164 (484)
T KOG1023|consen  157 PFDLRNLV  164 (484)
T ss_pred             cccccccc
Confidence            77765443

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.76  E-value=2.2e-19  Score=126.76  Aligned_cols=125  Identities=19%  Similarity=0.170  Sum_probs=104.9

Q ss_pred             CcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC-CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEc
Q 041845            8 HLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN-HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLD   86 (143)
Q Consensus         8 niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   86 (143)
                      |+++++..|...+.+|||+|-+. .+|...+.+- .+..+....+..++.|+..|+..|-.   .+++|.||||.|||+.
T Consensus       495 Hclrl~r~F~hknHLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~---c~vlHaDIKPDNiLVN  570 (752)
T KOG0670|consen  495 HCLRLFRHFKHKNHLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK---CGVLHADIKPDNILVN  570 (752)
T ss_pred             HHHHHHHHhhhcceeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh---cCeeecccCccceEec
Confidence            67888888999999999999885 5999988643 33556678889999999999999996   8999999999999999


Q ss_pred             CC-Ccccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           87 EN-WVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        87 ~~-~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .. ...|++|||.+..                +|+-+++.+|+...|+||.||.+||+-||..-|+.
T Consensus       571 E~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG  637 (752)
T KOG0670|consen  571 ESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPG  637 (752)
T ss_pred             cCcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCC
Confidence            55 6679999997743                34557788999999999999999999988765553

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=2.3e-18  Score=120.49  Aligned_cols=77  Identities=27%  Similarity=0.471  Sum_probs=68.2

Q ss_pred             CCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            6 HRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         6 h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      -.+||++++.|..    +..+|||+|+. +.+|...+.......++...++.|+.|++.|+.|||.  +.+|+|.||||+
T Consensus       141 ~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~--ecgIIHTDlKPE  217 (590)
T KOG1290|consen  141 KKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHR--ECGIIHTDLKPE  217 (590)
T ss_pred             CceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHH--hcCccccCCCcc
Confidence            3589999999974    34689999999 4589888877777788999999999999999999998  789999999999


Q ss_pred             cEEE
Q 041845           82 NILL   85 (143)
Q Consensus        82 nil~   85 (143)
                      |||+
T Consensus       218 NvLl  221 (590)
T KOG1290|consen  218 NVLL  221 (590)
T ss_pred             eeee
Confidence            9999

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=9.7e-18  Score=123.28  Aligned_cols=133  Identities=19%  Similarity=0.193  Sum_probs=106.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|+|++.....+.+.....-.||||+. +|..++.+.  ..+....+..++.|++.+++|+|+   .++.|||+|++
T Consensus       376 ~~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~~~~--~~~~~~e~~c~fKqL~~Gv~y~h~---~GiahrdlK~e  449 (601)
T KOG0590|consen  376 SSLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLVMSN--GKLTPLEADCFFKQLLRGVKYLHS---MGLAHRDLKLE  449 (601)
T ss_pred             ccccCCchhhhHHHHhhcccchhhhhcccH-HHHHHHhcc--cccchhhhhHHHHHHHHHHHHHHh---cCceeccCccc
Confidence            357899998777766666555556999998 999998654  356677788899999999999998   99999999999


Q ss_pred             cEEEcCCCcccccccchhhc----------------------cccccCCCCCC-CcccchhhhhhhhccccccCCCCccc
Q 041845           82 NILLDENWVAKHSRERQLRL----------------------LGSRILPAKLT-EKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~----------------------~~~~~~~~~~~-~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      |+++..++..|+.|||.+..                      ++|......|. ...||||.|+++..|.++.+||....
T Consensus       450 nll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~  529 (601)
T KOG0590|consen  450 NLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAK  529 (601)
T ss_pred             cEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCcccccc
Confidence            99999999999999987642                      22223344444 35799999999999999988887555


Q ss_pred             cc
Q 041845          139 VE  140 (143)
Q Consensus       139 ~~  140 (143)
                      ..
T Consensus       530 ~~  531 (601)
T KOG0590|consen  530 KS  531 (601)
T ss_pred             cc
Confidence            44

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.69  E-value=6.1e-18  Score=110.63  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=84.6

Q ss_pred             CCCCCCCcceeeEEeecC--------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            2 SNLRHRHLVSLIGHHVEN--------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~--------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      .+++|++|..+.+.+...        ...+++|||+++.+|.+..      .++.    ....++..++..+|+   .++
T Consensus        90 ~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~------~~~~----~~~~~i~~~l~~lH~---~gi  156 (232)
T PRK10359         90 DRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMP------EISE----DVKAKIKASIESLHQ---HGM  156 (232)
T ss_pred             HHHHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhh------hccH----HHHHHHHHHHHHHHH---cCC
Confidence            356799999998876532        3578999999998998764      1222    235588999999997   999


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhhccccc------cCCCCCCCcccchhhhhhhh
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLRLLGSR------ILPAKLTEKSDVYSFGVLCA  125 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~~~~~~------~~~~~~~~~~Di~s~G~~~~  125 (143)
                      +|+|++|.|++++.++ +++.|||......+.      .+...+..++|+||||+.+.
T Consensus       157 ~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a~d~~vler~y~~~~di~~lg~~~~  213 (232)
T PRK10359        157 VSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKAKDRIDLERHYGIKNEIKDLGYYLL  213 (232)
T ss_pred             ccCCCChHHEEEeCCC-EEEEECCCcccccchhhHHHHHHHhHhcccccccceeEeeh
Confidence            9999999999999888 999999876544332      23345668999999998653

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.68  E-value=8.2e-18  Score=121.50  Aligned_cols=124  Identities=23%  Similarity=0.368  Sum_probs=104.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.-+|+||+-++|.+.....+|+.||||.+|+|.+.-.  ...++.+.++...++....+++|||+   .+-+|||+|-
T Consensus        66 ~~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~--~TgplselqiayvcRetl~gl~ylhs---~gk~hRdiKG  140 (829)
T KOG0576|consen   66 LRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYH--VTGPLSELQIAYVCRETLQGLKYLHS---QGKIHRDIKG  140 (829)
T ss_pred             eecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceee--ecccchhHHHHHHHhhhhccchhhhc---CCcccccccc
Confidence            356689999999999999999999999999999998763  34588899999999999999999998   8889999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc---------------------cCCCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR---------------------ILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~---------------------~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      .||++++.+.+|+.|||...-....                     -....|....|+|+.|+.-.|+.-
T Consensus       141 anilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~e  210 (829)
T KOG0576|consen  141 ANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGE  210 (829)
T ss_pred             cceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhh
Confidence            9999999999999999875421111                     123467888999999988766543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.63  E-value=7.8e-17  Score=106.50  Aligned_cols=136  Identities=17%  Similarity=0.270  Sum_probs=103.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+-+.||||..++|.|.++..+.+++.|++.|+|...+.+......+..++.+.+.+++.++.|||++. .-+.-..++.
T Consensus       241 lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhsle-p~ipr~~lns  319 (448)
T KOG0195|consen  241 LRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLE-PMIPRFYLNS  319 (448)
T ss_pred             eeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcc-hhhhhhhccc
Confidence            456789999999999999999999999999999999997776666788899999999999999999855 2344457788


Q ss_pred             CcEEEcCCCccccc--ccchh-----h-cccccc-----CCCC---CCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHS--RERQL-----R-LLGSRI-----LPAK---LTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~--~~~~~-----~-~~~~~~-----~~~~---~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ..++++++-+.+++  |..+.     + +.|..+     ...+   .-.++|+|||++++||+-|...|+.+-
T Consensus       320 ~hvmidedltarismad~kfsfqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadl  392 (448)
T KOG0195|consen  320 KHVMIDEDLTARISMADTKFSFQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADL  392 (448)
T ss_pred             ceEEecchhhhheecccceeeeeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccC
Confidence            88999988776654  21111     1 122222     1111   124689999999999999988887654

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.61  E-value=7.1e-16  Score=106.17  Aligned_cols=88  Identities=20%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      -+.||+++.+++...+...+|+||.++....++..     .+....+..+++.+..|+.++|.   +||+|||+||.|++
T Consensus        93 G~~ni~~~~~~~rnnd~v~ivlp~~~H~~f~~l~~-----~l~~~~i~~Yl~~ll~Al~~~h~---~GIvHRDiKpsNFL  164 (418)
T KOG1167|consen   93 GSDNIIKLNGCFRNNDQVAIVLPYFEHDRFRDLYR-----SLSLAEIRWYLRNLLKALAHLHK---NGIVHRDIKPSNFL  164 (418)
T ss_pred             cchhhhcchhhhccCCeeEEEecccCccCHHHHHh-----cCCHHHHHHHHHHHHHHhhhhhc---cCccccCCCccccc
Confidence            36799999999999999999999999988888874     45578889999999999999997   99999999999999


Q ss_pred             EcCC-Ccccccccchhh
Q 041845           85 LDEN-WVAKHSRERQLR  100 (143)
Q Consensus        85 ~~~~-~~~k~~~~~~~~  100 (143)
                      ++.. +.-.+.|||++.
T Consensus       165 ~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  165 YNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             cccccCCceEEechhHH
Confidence            9844 555677888764

>PRK10345 hypothetical protein; Provisional

Probab=99.58  E-value=3.8e-15  Score=96.85  Aligned_cols=89  Identities=15%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             CCCCcceeeEEeecCC---c-hhhhHhh--hcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHH-hHhhcCCCCCeeecC
Q 041845            5 RHRHLVSLIGHHVENK---E-MILVYDC--MARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL-HYLHTGTRNTIIHRD   77 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~---~-~~lv~e~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~lh~~~~~~i~h~~   77 (143)
                      +||||++++|++.++.   . +.+|+||  +++++|.+++.+.   .+++.  ..++.+++.++ .|||+   .+|+|||
T Consensus        59 ~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~---~~IvhrD  130 (210)
T PRK10345         59 DWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLD---NRIVTME  130 (210)
T ss_pred             CCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHH---CCEeecC
Confidence            6899999999998764   3 3378999  5578999999542   34444  35567777777 89998   9999999


Q ss_pred             CCCCcEEEcCC----Ccccccc-cchhhc
Q 041845           78 VKSTNILLDEN----WVAKHSR-ERQLRL  101 (143)
Q Consensus        78 l~~~nil~~~~----~~~k~~~-~~~~~~  101 (143)
                      +||+||+++..    +.+++.| ||...+
T Consensus       131 lKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        131 LKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             CCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            99999999743    3789999 554433

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.56  E-value=2.6e-15  Score=104.60  Aligned_cols=86  Identities=22%  Similarity=0.147  Sum_probs=68.2

Q ss_pred             CCCCCCCCcce-eeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC-
Q 041845            1 LSNLRHRHLVS-LIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV-   78 (143)
Q Consensus         1 L~~l~h~niv~-~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l-   78 (143)
                      |++++|+|++. +++.    +..+++|||+++++|....   ..   .   ...++.+++.++.|+|+   .+++|||| 
T Consensus        75 L~~L~h~~iv~~l~~~----~~~~LVmE~~~G~~L~~~~---~~---~---~~~~~~~i~~aL~~lH~---~gIiHrDL~  138 (365)
T PRK09188         75 LKTVRGIGVVPQLLAT----GKDGLVRGWTEGVPLHLAR---PH---G---DPAWFRSAHRALRDLHR---AGITHNDLA  138 (365)
T ss_pred             HHhccCCCCCcEEEEc----CCcEEEEEccCCCCHHHhC---cc---c---hHHHHHHHHHHHHHHHH---CCCeeCCCC
Confidence            45788999985 4432    4579999999998986321   11   1   13567889999999998   89999999 


Q ss_pred             CCCcEEEcCCCcccccccchhhcc
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~  102 (143)
                      ||+||+++.++.+++.|||++...
T Consensus       139 KP~NILv~~~~~ikLiDFGlA~~~  162 (365)
T PRK09188        139 KPQNWLMGPDGEAAVIDFQLASVF  162 (365)
T ss_pred             CcceEEEcCCCCEEEEECccceec
Confidence            999999998899999999987643

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.56  E-value=3.4e-15  Score=96.27  Aligned_cols=116  Identities=20%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             CCCCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC-
Q 041845            1 LSNLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV-   78 (143)
Q Consensus         1 L~~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l-   78 (143)
                      |+++. |+++.+++++    +..+++|||+.+.+|.+....         ....++.|++.++.++|+   .+++|+|+ 
T Consensus        55 L~~L~~~~~vP~ll~~----~~~~lvmeyI~G~~L~~~~~~---------~~~~~~~qi~~~L~~lH~---~GIvHrDL~  118 (218)
T PRK12274         55 LRQLDGLPRTPRLLHW----DGRHLDRSYLAGAAMYQRPPR---------GDLAYFRAARRLLQQLHR---CGVAHNDLA  118 (218)
T ss_pred             HHhcCCCCCCCEEEEE----cCEEEEEeeecCccHHhhhhh---------hhHHHHHHHHHHHHHHHH---CcCccCCCC
Confidence            34564 5788888885    346899999998888654311         113467788999999997   99999999 


Q ss_pred             CCCcEEEcCCCcccccccchhhcccccc---------------------CCCCC-----------C-Ccccchhhhhhhh
Q 041845           79 KSTNILLDENWVAKHSRERQLRLLGSRI---------------------LPAKL-----------T-EKSDVYSFGVLCA  125 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~~~~~---------------------~~~~~-----------~-~~~Di~s~G~~~~  125 (143)
                      +|.||+++.++.+++.|||.+....+..                     .++..           + ...++.+.|.-+|
T Consensus       119 kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~  198 (218)
T PRK12274        119 KEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVY  198 (218)
T ss_pred             CcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHH
Confidence            7999999999999999999876332221                     11111           1 3468888999999


Q ss_pred             ccccccC
Q 041845          126 RPAMLPM  132 (143)
Q Consensus       126 ~~~~~~~  132 (143)
                      .+.|+..
T Consensus       199 ~~~~~~~  205 (218)
T PRK12274        199 RFVTRRV  205 (218)
T ss_pred             HHHhccC
Confidence            9999653

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.55  E-value=8.4e-15  Score=105.41  Aligned_cols=126  Identities=21%  Similarity=0.127  Sum_probs=106.0

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      .||.++++.-.++++...+++.++..+|.+...+..  ...+.+.....+...++.++.++|+   .+++++|+|++||+
T Consensus        55 ~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~--~~~f~~~~~~~~~aelaLald~lh~---l~iiyrd~k~enil  129 (612)
T KOG0603|consen   55 NTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSK--EVMFDELDVAFYLAELALALDHLHK---LGIAYRDYKLENVL  129 (612)
T ss_pred             CCCceeeeeeeeccccchhHhhhhcccchhhhcccc--CCchHHHHHHHHHHHHHHHHhhcch---hHHHHhccccccee
Confidence            389999999999999999999999999999887743  3466777778888899999999997   89999999999999


Q ss_pred             EcCCCcccccccchhhcc-------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDENWVAKHSRERQLRLL-------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~-------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ++..|.++..|||.....             .+++.. .....+|+||||++.+||+++..|+..
T Consensus       130 ld~~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~-gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  130 LLLEGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIIN-GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             ecccCccccCCchhhhHhHhhhhcccchhhhhhHhhh-ccCCcccchhhhhhHHHHhhCCCCCch
Confidence            999999999999876422             111112 356789999999999999999888876

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.53  E-value=3.9e-15  Score=95.64  Aligned_cols=74  Identities=14%  Similarity=0.121  Sum_probs=61.3

Q ss_pred             hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHh-hcCCCCCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           22 MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYL-HTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        22 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-h~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      .++||||++++++......  ...++......++.|++.++.++ |+   .+++|+|+||+||+++ ++.+++.|||++.
T Consensus        92 ~~iVmE~i~g~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~l~H~---~giiHrDlkP~NIli~-~~~v~LiDFG~a~  165 (190)
T cd05147          92 HVLVMEFIGDDGWAAPRLK--DAPLSESKARELYLQVIQIMRILYQD---CRLVHADLSEYNLLYH-DGKLYIIDVSQSV  165 (190)
T ss_pred             CEEEEEEeCCCCCcchhhh--cCCCCHHHHHHHHHHHHHHHHHHHHh---CCcccCCCCHHHEEEE-CCcEEEEEccccc
Confidence            3799999988766544322  23677888999999999999999 66   7999999999999998 4789999999875


Q ss_pred             c
Q 041845          101 L  101 (143)
Q Consensus       101 ~  101 (143)
                      .
T Consensus       166 ~  166 (190)
T cd05147         166 E  166 (190)
T ss_pred             c
Confidence            4

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.52  E-value=2e-14  Score=97.81  Aligned_cols=131  Identities=30%  Similarity=0.357  Sum_probs=104.1

Q ss_pred             CCCCCC-CcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHR-HLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~-niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.+.|+ +++++.+.+......+++++++.++++.+.+..... ..+.......+..|++.++.++|.   .+++|||++
T Consensus        52 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~---~~~~hrd~k  128 (384)
T COG0515          52 ASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHS---KGIIHRDIK  128 (384)
T ss_pred             HHccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCC
Confidence            356666 799999999777778999999999999976643321 257788889999999999999997   889999999


Q ss_pred             CCcEEEcCCC-cccccccchhhcccc------------------------ccCC---CCCCCcccchhhhhhhhcccccc
Q 041845           80 STNILLDENW-VAKHSRERQLRLLGS------------------------RILP---AKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        80 ~~nil~~~~~-~~k~~~~~~~~~~~~------------------------~~~~---~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      |+|++++... ..++.|||.+.....                        ....   ...+...|+||+|+++++++++.
T Consensus       129 p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~  208 (384)
T COG0515         129 PENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGL  208 (384)
T ss_pred             HHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCC
Confidence            9999999888 699999997642211                        1112   35677899999999999988876


Q ss_pred             CCCC
Q 041845          132 MAEN  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      .|+.
T Consensus       209 ~p~~  212 (384)
T COG0515         209 PPFE  212 (384)
T ss_pred             CCCC
Confidence            6644

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.50  E-value=5.7e-14  Score=97.12  Aligned_cols=127  Identities=19%  Similarity=0.167  Sum_probs=100.4

Q ss_pred             CCcceeeEEe-ecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEE
Q 041845            7 RHLVSLIGHH-VENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILL   85 (143)
Q Consensus         7 ~niv~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~   85 (143)
                      +++..+++.. ..+...++||+.. +.+|.+.........++..+...++.|++.++.++|+   .+++|||+||.|+.+
T Consensus        80 ~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~---~G~iHRDiKp~N~~~  155 (322)
T KOG1164|consen   80 SHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHS---KGFIHRDIKPENFVV  155 (322)
T ss_pred             CCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHh---cCcccCCcCHHHeee
Confidence            5788888887 4777889999988 6799998865556788999999999999999999997   999999999999999


Q ss_pred             cCCC-----cccccccchhhccc-----------ccc-----------------CCCCCCCcccchhhhhhhhccccccC
Q 041845           86 DENW-----VAKHSRERQLRLLG-----------SRI-----------------LPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        86 ~~~~-----~~k~~~~~~~~~~~-----------~~~-----------------~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      +...     .+.+.|||+++...           ++-                 .....+.+.|+||++-++.++..+..
T Consensus       156 g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~L  235 (322)
T KOG1164|consen  156 GQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSL  235 (322)
T ss_pred             cCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCC
Confidence            8653     46788999987211           110                 01123567899999999999888777


Q ss_pred             CCCcc
Q 041845          133 AENEQ  137 (143)
Q Consensus       133 ~~~~~  137 (143)
                      |+...
T Consensus       236 PW~~~  240 (322)
T KOG1164|consen  236 PWEAL  240 (322)
T ss_pred             CCccc
Confidence            77543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.50  E-value=1.4e-14  Score=93.12  Aligned_cols=93  Identities=14%  Similarity=0.059  Sum_probs=67.8

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      +.|+++.....+...  ..++||||++++++......  ...++......++.|++.++.++|+  ..+++|+|++|+||
T Consensus        76 l~~~~i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~--~~~~~~~~~~~i~~~l~~~l~~lH~--~~givHrDlkP~NI  149 (190)
T cd05145          76 LYEAGVPVPEPILLK--KNVLVMEFIGDDGSPAPRLK--DVPLEEEEAEELYEQVVEQMRRLYQ--EAGLVHGDLSEYNI  149 (190)
T ss_pred             HHhCCCCCceEEEec--CCEEEEEEecCCCchhhhhh--hccCCHHHHHHHHHHHHHHHHHHHH--hCCEecCCCChhhE
Confidence            445555433333222  24799999988755433212  2345677888999999999999995  37999999999999


Q ss_pred             EEcCCCcccccccchhhccc
Q 041845           84 LLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~~~  103 (143)
                      +++ ++.+++.|||.+...+
T Consensus       150 ll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145         150 LYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             EEE-CCCEEEEEcccceecC
Confidence            998 7889999999876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.49  E-value=1.2e-14  Score=110.35  Aligned_cols=127  Identities=20%  Similarity=0.174  Sum_probs=98.8

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      ..++||.+.+.-+-++....|+|=+|..+ +|.+.+.-++  -+.....+.++.|++.|+..+|.   .+|+|||||.+|
T Consensus        77 l~~~pn~lPfqk~~~t~kAAylvRqyvkh-nLyDRlSTRP--FL~~iEKkWiaFQLL~al~qcH~---~gVcHGDIKsEN  150 (1431)
T KOG1240|consen   77 LMKAPNCLPFQKVLVTDKAAYLVRQYVKH-NLYDRLSTRP--FLVLIEKKWIAFQLLKALSQCHK---LGVCHGDIKSEN  150 (1431)
T ss_pred             hhcCCcccchHHHHHhhHHHHHHHHHHhh-hhhhhhccch--HHHHHHHHHHHHHHHHHHHHHHH---cCccccccccce
Confidence            35789999988777788889999999987 9999985442  44567778899999999999997   999999999999


Q ss_pred             EEEcCCCcccccccchh-------------------------hccccccCC----------CC-CCCcccchhhhhhhhc
Q 041845           83 ILLDENWVAKHSRERQL-------------------------RLLGSRILP----------AK-LTEKSDVYSFGVLCAR  126 (143)
Q Consensus        83 il~~~~~~~k~~~~~~~-------------------------~~~~~~~~~----------~~-~~~~~Di~s~G~~~~~  126 (143)
                      ||+++=+..-++||...                         +.+|+++..          .. .+++-||+|+||++.|
T Consensus       151 ILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaE  230 (1431)
T KOG1240|consen  151 ILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAE  230 (1431)
T ss_pred             EEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHH
Confidence            99998777777777532                         123333322          12 5678899999999999


Q ss_pred             cccc-cCCCC
Q 041845          127 PAML-PMAEN  135 (143)
Q Consensus       127 ~~~~-~~~~~  135 (143)
                      +++- ..+|.
T Consensus       231 Lf~Eg~PlF~  240 (1431)
T KOG1240|consen  231 LFLEGRPLFT  240 (1431)
T ss_pred             HHhcCCCccc
Confidence            9883 44443

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=5.8e-14  Score=97.24  Aligned_cols=123  Identities=24%  Similarity=0.262  Sum_probs=87.9

Q ss_pred             CCCCcceeeEEeecC---------------------------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHH
Q 041845            5 RHRHLVSLIGHHVEN---------------------------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG   57 (143)
Q Consensus         5 ~h~niv~~~~~~~~~---------------------------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   57 (143)
                      +|||||++.+.|.++                           ..+|+||...+. +|..++-.+.   ........++.|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~---~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH---RSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC---CchHHHHHHHHH
Confidence            799999999988642                           247899998876 8988885442   334455667889


Q ss_pred             HHHHHhHhhcCCCCCeeecCCCCCcEEEcC--CC--cccccccchhh-----------------------ccccccCC--
Q 041845           58 AARGLHYLHTGTRNTIIHRDVKSTNILLDE--NW--VAKHSRERQLR-----------------------LLGSRILP--  108 (143)
Q Consensus        58 i~~~l~~lh~~~~~~i~h~~l~~~nil~~~--~~--~~k~~~~~~~~-----------------------~~~~~~~~--  108 (143)
                      ++.|+.|||.   .++.|||+|..|||+.-  ++  ...+.|||++-                       ++.+++..  
T Consensus       350 lLEav~hL~~---hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~  426 (598)
T KOG4158|consen  350 LLEAVTHLHK---HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAV  426 (598)
T ss_pred             HHHHHHHHHH---ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcC
Confidence            9999999997   89999999999999952  32  34577888642                       11111111  


Q ss_pred             -CCC----CCcccchhhhhhhhccccccCCC
Q 041845          109 -AKL----TEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus       109 -~~~----~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                       ++.    -.++|.|+.|.+-||++...-||
T Consensus       427 PGp~avvny~kAD~WA~GalaYEIfg~~NPF  457 (598)
T KOG4158|consen  427 PGPNAVVNYEKADTWAAGALAYEIFGRSNPF  457 (598)
T ss_pred             CCCceeeccchhhhhhhhhhHHHHhccCCcc
Confidence             111    14789999999999998754443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.42  E-value=1.8e-13  Score=99.55  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=93.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.+|||||+++++.++....+|+|+|-+.  +|...+.+..     .......+.||+.|+.+||+  +.+++|+|+..
T Consensus        63 lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~-----~~~v~~Gl~qIl~AL~FL~~--d~~lvHgNv~~  133 (690)
T KOG1243|consen   63 LKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELG-----KEEVCLGLFQILAALSFLND--DCNLVHGNVCK  133 (690)
T ss_pred             hhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhH-----HHHHHHHHHHHHHHHHHHhc--cCCeeeccEee
Confidence            678999999999999999999999999883  6777774332     45566778999999999986  58899999999


Q ss_pred             CcEEEcCCCcccccccchhhcccccc-------------CCCCCC---Ccccchhhhhhhhccccc
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSRI-------------LPAKLT---EKSDVYSFGVLCARPAML  130 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~~-------------~~~~~~---~~~Di~s~G~~~~~~~~~  130 (143)
                      ..++++..|..|++.|....-.....             .+....   ...|.|.|||++|++.-+
T Consensus       134 ~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  134 DSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSEWSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             eeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccccchhhhhHHHHHHHHhCc
Confidence            99999999999998876442111100             011111   236999999999998776

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.42  E-value=1.6e-13  Score=100.72  Aligned_cols=87  Identities=16%  Similarity=0.142  Sum_probs=74.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|++++....++.++...+++|||+++++|.+.+.          ....++.+++.++.++|+   .+++|||++|+
T Consensus       391 ~~l~~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~---~giiHrDlkp~  457 (535)
T PRK09605        391 SEARRAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHK---AGIVHGDLTTS  457 (535)
T ss_pred             HhhcccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHh---CCCccCCCChH
Confidence            45788999888777777777899999999999998873          246688899999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc
Q 041845           82 NILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~  102 (143)
                      ||++ .++.+++.|||.++..
T Consensus       458 NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        458 NFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             HEEE-ECCcEEEEeCcccccC
Confidence            9999 5778999999987654

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.40  E-value=1.8e-13  Score=89.10  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      .++|+++.....++......+++|||+++++|.+.+....     . ....++.+++.++.++|+   .+++|+|++|.|
T Consensus        55 ~l~~~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~---~~i~H~Dl~p~N  125 (211)
T PRK14879         55 RARKAGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLHS---AGIIHGDLTTSN  125 (211)
T ss_pred             HHHHCCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHh---CCcccCCCCccc
Confidence            3567777777667767778899999999999999884321     1 667888999999999997   899999999999


Q ss_pred             EEEcCCCcccccccchhhc
Q 041845           83 ILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        83 il~~~~~~~k~~~~~~~~~  101 (143)
                      |+++ ++.+++.|||.+..
T Consensus       126 il~~-~~~~~liDf~~a~~  143 (211)
T PRK14879        126 MILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEEE-CCCEEEEECCcccC
Confidence            9999 77889999997655

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.3e-13  Score=97.67  Aligned_cols=103  Identities=22%  Similarity=0.315  Sum_probs=86.6

Q ss_pred             chhhhHhhhcCCCHHHHhhcC-CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchh
Q 041845           21 EMILVYDCMARGTLRDHLYNN-HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQL   99 (143)
Q Consensus        21 ~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~   99 (143)
                      .+++.|++|+..+|.+.+..+ .....+....+.++.|++.++.|      ++.+|+|++|.||++..+...|+.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhhhe
Confidence            588999999999999999633 33455677888999999999998      56899999999999999999999999875


Q ss_pred             h------------------------ccccccCCCCCCCcccchhhhhhhhcccc
Q 041845          100 R------------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus       100 ~------------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      .                        +.|+.+.+..|+.++||||||++++|++.
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHH
Confidence            3                        33445666789999999999999999875

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.36  E-value=3.6e-13  Score=86.98  Aligned_cols=86  Identities=15%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      ++|+++......+...+..+++|||+++++|.+.+....      .   .++.+++.++.++|+   .+++|+|++|.|+
T Consensus        54 l~~~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~------~---~~~~~i~~~l~~lH~---~gi~H~Dl~~~Ni  121 (199)
T TIGR03724        54 ARKAGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGN------D---ELLREIGRLVGKLHK---AGIVHGDLTTSNI  121 (199)
T ss_pred             HHHCCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcH------H---HHHHHHHHHHHHHHH---CCeecCCCCcceE
Confidence            455555444444456667789999999999988773321      0   778899999999997   8999999999999


Q ss_pred             EEcCCCcccccccchhhcc
Q 041845           84 LLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~~~  102 (143)
                      +++ ++.+++.|||.+...
T Consensus       122 l~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724       122 IVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             EEE-CCcEEEEECCCCcCC
Confidence            999 788999999976553

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.32  E-value=3.9e-13  Score=90.67  Aligned_cols=112  Identities=22%  Similarity=0.270  Sum_probs=72.7

Q ss_pred             hhhHhhhcCCCHHHHhh---cCCCC--CCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccc
Q 041845           23 ILVYDCMARGTLRDHLY---NNHKP--PLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRER   97 (143)
Q Consensus        23 ~lv~e~~~~~~l~~~~~---~~~~~--~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~   97 (143)
                      +++|+-+. ++|.+++.   .....  .+.......+..|++..+++||.   .+++|+|++|+|++++.+|.+.++||+
T Consensus       115 ~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~---~GlVHgdi~~~nfll~~~G~v~Lg~F~  190 (288)
T PF14531_consen  115 FLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHS---YGLVHGDIKPENFLLDQDGGVFLGDFS  190 (288)
T ss_dssp             EEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEEEST-SGGGEEE-TTS-EEE--GG
T ss_pred             hhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhh---cceEecccceeeEEEcCCCCEEEcChH
Confidence            45566553 47777653   12211  22334446667899999999998   999999999999999999999999987


Q ss_pred             hhhccccc--------------cC---------CCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           98 QLRLLGSR--------------IL---------PAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        98 ~~~~~~~~--------------~~---------~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      .....+..              ..         .-.++.+.|.|++|+++|.++.+..|+....
T Consensus       191 ~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~  254 (288)
T PF14531_consen  191 SLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSS  254 (288)
T ss_dssp             GEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCG
T ss_pred             HHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCC
Confidence            65422221              11         1135677899999999999999888887443

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.32  E-value=1.2e-11  Score=84.08  Aligned_cols=126  Identities=17%  Similarity=0.108  Sum_probs=95.5

Q ss_pred             CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEE
Q 041845            6 HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILL   85 (143)
Q Consensus         6 h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~   85 (143)
                      .+.|...+-+-..+..-.+|+|.. +.||++... .-+..|+..++..++.|++..+.++|+   +.++.||+||+|+|+
T Consensus        83 ~~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD-~CgR~FSvKTV~miA~Qmi~rie~vH~---k~LIYRDIKPdNFLI  157 (449)
T KOG1165|consen   83 TEGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFD-LCGRRFSVKTVAMIAKQMITRIEYVHE---KDLIYRDIKPDNFLI  157 (449)
T ss_pred             CCCCCceeeeccccchhhhhhhhh-CcCHHHHHH-HhcCcccHHhHHHHHHHHHHHHHHHHh---cceeecccCccceee
Confidence            356666655555666777999988 679988874 335689999999999999999999998   899999999999999


Q ss_pred             cCCC-----cccccccchhhccccc-------------------------cCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           86 DENW-----VAKHSRERQLRLLGSR-------------------------ILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        86 ~~~~-----~~k~~~~~~~~~~~~~-------------------------~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +..+     .+-+.|||++......                         -++...+...|+=|+|.++.+-+-|.+||.
T Consensus       158 Grp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQ  237 (449)
T KOG1165|consen  158 GRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQ  237 (449)
T ss_pred             cCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccc
Confidence            8553     3557899987533221                         122344667899999998887777766665


Q ss_pred             c
Q 041845          136 E  136 (143)
Q Consensus       136 ~  136 (143)
                      .
T Consensus       238 G  238 (449)
T KOG1165|consen  238 G  238 (449)
T ss_pred             c
Confidence            3

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.26  E-value=4.6e-12  Score=84.17  Aligned_cols=90  Identities=19%  Similarity=0.109  Sum_probs=66.8

Q ss_pred             CCCCCCc--ceeeEEeecC-Cc---hhhhHhhhcC-CCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            3 NLRHRHL--VSLIGHHVEN-KE---MILVYDCMAR-GTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         3 ~l~h~ni--v~~~~~~~~~-~~---~~lv~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      .++|+++  ++.++....+ ..   .+++||++++ .+|.+.+...   .++..    .+.+++.++.++|+   .+++|
T Consensus        96 ~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~----~~~~i~~~l~~lH~---~GI~H  165 (239)
T PRK01723         96 QLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQEA---PLSEE----QWQAIGQLIARFHD---AGVYH  165 (239)
T ss_pred             HHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhcC---CCCHH----HHHHHHHHHHHHHH---CCCCC
Confidence            3556654  5666654332 22   2499999986 6898887432   33333    35688999999998   99999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~  102 (143)
                      +|++|.||+++.++.+++.|||.+...
T Consensus       166 rDlkp~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        166 ADLNAHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             CCCCchhEEEcCCCCEEEEECCCcccC
Confidence            999999999998888999999977654

>smart00090 RIO RIO-like kinase

Probab=99.24  E-value=6.8e-12  Score=83.25  Aligned_cols=78  Identities=14%  Similarity=0.093  Sum_probs=62.2

Q ss_pred             chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC-eeecCCCCCcEEEcCCCcccccccchh
Q 041845           21 EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT-IIHRDVKSTNILLDENWVAKHSRERQL   99 (143)
Q Consensus        21 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~-i~h~~l~~~nil~~~~~~~k~~~~~~~   99 (143)
                      ..++||||+++.++.......  ..........++.|++.++.++|+   .+ ++|+|++|+||+++ ++.+++.|||.+
T Consensus       122 ~~~lV~E~~~g~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~g~iiH~Dikp~NIli~-~~~i~LiDFg~a  195 (237)
T smart00090      122 RNVLVMEFIGGDGLPAPRLKD--VEPEEEEEFELYDDILEEMRKLYK---EGELVHGDLSEYNILVH-DGKVVIIDVSQS  195 (237)
T ss_pred             CceEEEEEecCCccccccccc--CCcchHHHHHHHHHHHHHHHHHHh---cCCEEeCCCChhhEEEE-CCCEEEEEChhh
Confidence            357999999987776554222  234455667889999999999998   88 99999999999999 788999999987


Q ss_pred             hcccc
Q 041845          100 RLLGS  104 (143)
Q Consensus       100 ~~~~~  104 (143)
                      .....
T Consensus       196 ~~~~~  200 (237)
T smart00090      196 VELDH  200 (237)
T ss_pred             hccCC
Confidence            65443

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.23  E-value=8.9e-12  Score=81.42  Aligned_cols=121  Identities=17%  Similarity=0.104  Sum_probs=87.3

Q ss_pred             ceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCC-
Q 041845           10 VSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN-   88 (143)
Q Consensus        10 v~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~-   88 (143)
                      ..+..+..++..-.+||+.. +.+|.+...-+ ...++..+.+-++.|++..+.|+|.   ++.+|||+||.|+|+.-+ 
T Consensus        74 P~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC-~R~ftmkTvLMLaDQml~RiEyvH~---r~fiHRDIKPdNFLMGlgr  148 (341)
T KOG1163|consen   74 PHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFC-SRRFTMKTVLMLADQMLSRIEYVHL---RNFIHRDIKPDNFLMGLGR  148 (341)
T ss_pred             chhhhhccccccceeeeecc-CccHHHHHHHH-hhhhhHHhHHHHHHHHHHHHHHHHh---hccccccCCccceeecccc
Confidence            34444555677788999988 67999887433 3578889999999999999999997   899999999999999854 


Q ss_pred             --Ccccccccchhhccccc-------------------------cCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           89 --WVAKHSRERQLRLLGSR-------------------------ILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        89 --~~~k~~~~~~~~~~~~~-------------------------~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                        ...-+.|||++.-....                         ..+...+...|+=|+|-++-+.--+.+||.
T Consensus       149 h~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQ  222 (341)
T KOG1163|consen  149 HCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQ  222 (341)
T ss_pred             ccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCccc
Confidence              34457899987422111                         011233567899999977665444444443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=6.6e-12  Score=92.87  Aligned_cols=131  Identities=21%  Similarity=0.208  Sum_probs=104.5

Q ss_pred             CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhh-cCCCCCeeecCCCCCcEE
Q 041845            6 HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLH-TGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         6 h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~~l~~~nil   84 (143)
                      |+|++++++...+++..++++++..++++...+........+......++.|+..++.|+| .   .++.|+|++|+|.+
T Consensus        80 h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~---~~~~h~~ikP~n~~  156 (601)
T KOG0590|consen   80 HSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPE---NGVTHRDIKPSNSL  156 (601)
T ss_pred             cccccccCCccCCCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcc---cccccCCCCCccch
Confidence            9999999999999999999999999999888773222224455667788999999999999 6   89999999999999


Q ss_pred             EcCCC-cccccccchhhcccc-----------------ccCCC------CCCCcccchhhhhhhhccccccCCCCcccc
Q 041845           85 LDENW-VAKHSRERQLRLLGS-----------------RILPA------KLTEKSDVYSFGVLCARPAMLPMAENEQEV  139 (143)
Q Consensus        85 ~~~~~-~~k~~~~~~~~~~~~-----------------~~~~~------~~~~~~Di~s~G~~~~~~~~~~~~~~~~~~  139 (143)
                      ++..+ ..++.||+.+.....                 ...++      ...+..|+||.|+++.-+.++..|+.....
T Consensus       157 l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~  235 (601)
T KOG0590|consen  157 LDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSR  235 (601)
T ss_pred             hccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccc
Confidence            99998 899999988753322                 11111      124568999999999999998888775443

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.19  E-value=1.1e-11  Score=76.10  Aligned_cols=86  Identities=16%  Similarity=0.070  Sum_probs=69.8

Q ss_pred             CCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEc
Q 041845            7 RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLD   86 (143)
Q Consensus         7 ~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~   86 (143)
                      .++.++++....++..++++||+++.++...         +......+..+++.++..+|.....+++|+|++|.|++++
T Consensus        53 ~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~  123 (155)
T cd05120          53 LPVPKVLASGESDGWSYLLMEWIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVD  123 (155)
T ss_pred             CCCCeEEEEcCCCCccEEEEEecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEE
Confidence            5788888888777889999999987655432         3455567788999999999974445799999999999999


Q ss_pred             CCCcccccccchhhc
Q 041845           87 ENWVAKHSRERQLRL  101 (143)
Q Consensus        87 ~~~~~k~~~~~~~~~  101 (143)
                      +.+.+++.||+.+.+
T Consensus       124 ~~~~~~l~Df~~~~~  138 (155)
T cd05120         124 DGKILGIIDWEYAGY  138 (155)
T ss_pred             CCcEEEEEecccccC
Confidence            888999999987644

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=1.2e-11  Score=94.41  Aligned_cols=120  Identities=18%  Similarity=0.119  Sum_probs=93.9

Q ss_pred             CcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcC
Q 041845            8 HLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDE   87 (143)
Q Consensus         8 niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~   87 (143)
                      .|..+..+....+.-++++||.+.|+|.+.+.  .....++.....++.|++..+..||.   .+|+|+||||.|+++..
T Consensus       755 ~~~~~~~a~~~~~~S~lv~ey~~~Gtlld~~N--~~~~m~e~lv~~~~~qml~ive~lH~---~~IIHgDiKPDNfll~~  829 (974)
T KOG1166|consen  755 SIMHISSAHVFQNASVLVSEYSPYGTLLDLIN--TNKVMDEYLVMFFSCQMLRIVEHLHA---MGIIHGDIKPDNFLLRR  829 (974)
T ss_pred             chHHHHHHHccCCcceeeeeccccccHHHhhc--cCCCCCchhhhHHHHHHHHHHHHHHh---cceecccCCcceeEeec
Confidence            44455555556677889999999999999994  45577889999999999999999997   99999999999999964


Q ss_pred             C-------Ccccccccchhh---ccc-----------------cccCCCCCCCcccchhhhhhhhccccccC
Q 041845           88 N-------WVAKHSRERQLR---LLG-----------------SRILPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        88 ~-------~~~k~~~~~~~~---~~~-----------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      .       ...++.|||.+-   +.+                 +...+.+++-.+|.+.++.+++-|++|.+
T Consensus       830 ~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  830 EICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             ccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            3       245788988642   111                 11234567888999999999999998754

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.15  E-value=8.3e-12  Score=84.79  Aligned_cols=129  Identities=24%  Similarity=0.340  Sum_probs=94.7

Q ss_pred             CCCCCCcceeeEEeecCC-----chhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            3 NLRHRHLVSLIGHHVENK-----EMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~-----~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      ++.|.||++++.+|.+..     ...+++||+..|++.+++++-  ....+.....++++.||..|+.|||+.. ..++|
T Consensus       123 qlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~-Ppiih  201 (458)
T KOG1266|consen  123 QLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCD-PPIIH  201 (458)
T ss_pred             HHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccC-Ccccc
Confidence            456899999999887543     466789999999999999643  2345566778899999999999999855 67999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc----------------------cccccCCCCCCCcccchhhhhhhhccccccC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL----------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~----------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      +++..+.++...++.+|+........                      .++.-...+.+.++|||+||....+|.-+..
T Consensus       202 gnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEi  280 (458)
T KOG1266|consen  202 GNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEI  280 (458)
T ss_pred             CCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHhee
Confidence            99999999999998888764221110                      0111111233567899999987777766543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.14  E-value=1.6e-11  Score=79.33  Aligned_cols=70  Identities=16%  Similarity=0.022  Sum_probs=58.2

Q ss_pred             CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchh
Q 041845           20 KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQL   99 (143)
Q Consensus        20 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~   99 (143)
                      ...+++|||++++++......        .....++.+++.++.++|+   .+++|+|++|.||+++.++.+++.|||.+
T Consensus       104 ~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~---~gi~H~Dl~p~Nill~~~~~~~liDfg~~  172 (198)
T cd05144         104 NRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYK---HGIIHGDLSEFNILVDDDEKIYIIDWPQM  172 (198)
T ss_pred             CCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHH---CCCCcCCCCcccEEEcCCCcEEEEECCcc
Confidence            356899999999888764410        2345677899999999997   89999999999999999999999999976


Q ss_pred             h
Q 041845          100 R  100 (143)
Q Consensus       100 ~  100 (143)
                      .
T Consensus       173 ~  173 (198)
T cd05144         173 V  173 (198)
T ss_pred             c
Confidence            3

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.03  E-value=1.7e-10  Score=88.12  Aligned_cols=75  Identities=20%  Similarity=0.226  Sum_probs=59.8

Q ss_pred             HHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhh---------------------------------cccc
Q 041845           58 AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR---------------------------------LLGS  104 (143)
Q Consensus        58 i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~---------------------------------~~~~  104 (143)
                      ++.++.|+|+   .+++|||++|.|.+++.-|.+|++|||+..                                 .+++
T Consensus       152 mvla~Eylh~---ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPe  228 (1205)
T KOG0606|consen  152 MVLAVEYLHS---YGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPE  228 (1205)
T ss_pred             hhHHhHhhcc---CCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChh
Confidence            3779999997   899999999999999999999999998753                                 1222


Q ss_pred             ccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845          105 RILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus       105 ~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      .+..+.|.+.+|+|++|+++||-+-+..|+.
T Consensus       229 VilrqgygkpvdwwamGiIlyeFLVgcvpff  259 (1205)
T KOG0606|consen  229 VILRQGYGKPVDWWAMGIILYEFLVGCVPFF  259 (1205)
T ss_pred             hhhhhccCCCccHHHHHHHHHHHheeeeecc
Confidence            3444567889999999999999555444443

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.81  E-value=2.9e-09  Score=68.05  Aligned_cols=74  Identities=15%  Similarity=0.082  Sum_probs=54.7

Q ss_pred             chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           21 EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        21 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..+++|||++++++........  ... .....++.+++.++.++|.  ..+++|+|++|+||+++ ++.+++.|||.+.
T Consensus        89 ~~~lv~e~~~g~~~~~~~l~~~--~~~-~~~~~~~~~~~~~l~~lh~--~~~ivH~Dl~p~Nili~-~~~~~liDfg~a~  162 (187)
T cd05119          89 RHVLVMEFIGGDGIPAPRLKDV--RLL-EDPEELYDQILELMRKLYR--EAGLVHGDLSEYNILVD-DGKVYIIDVPQAV  162 (187)
T ss_pred             CCEEEEEEeCCCCccChhhhhh--hhc-ccHHHHHHHHHHHHHHHhh--ccCcCcCCCChhhEEEE-CCcEEEEECcccc
Confidence            3578999998843321110000  001 4567888999999999995  37899999999999999 8889999999764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.71  E-value=3.5e-08  Score=62.54  Aligned_cols=97  Identities=15%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             eecCCchhhhHhhhcC-CCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcc---
Q 041845           16 HVENKEMILVYDCMAR-GTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVA---   91 (143)
Q Consensus        16 ~~~~~~~~lv~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~---   91 (143)
                      +.+...-.+.|||.++ .++.+++.+..............+.++-..+.-||.   ++++|+||.++||++.+++..   
T Consensus        79 ~~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~---ndiiHGDLTTSNill~~~~~~~~~  155 (229)
T KOG3087|consen   79 FIDTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHD---NDIIHGDLTTSNILLRSDGNQITP  155 (229)
T ss_pred             EEecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhh---CCeecccccccceEEecCCCcCce
Confidence            4456667789999975 377888765433333223335677778888999997   999999999999999766543   


Q ss_pred             cccccchhhccccccCCCCCCCcccchhh
Q 041845           92 KHSRERQLRLLGSRILPAKLTEKSDVYSF  120 (143)
Q Consensus        92 k~~~~~~~~~~~~~~~~~~~~~~~Di~s~  120 (143)
                      -+.|||+....     ...-+..+|+|=|
T Consensus       156 ~lIdfgls~~s-----~~~EDKgVDLYVl  179 (229)
T KOG3087|consen  156 ILIDFGLSSVS-----RLPEDKGVDLYVL  179 (229)
T ss_pred             EEEeecchhcc-----cCcccccceeeee
Confidence            57899976543     2223455676643

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.69  E-value=2.3e-08  Score=64.42  Aligned_cols=74  Identities=15%  Similarity=0.103  Sum_probs=53.6

Q ss_pred             CchhhhHhhhcCCCHHH-HhhcCCCCCCcHHHHHHHHHHHHHHHhHh-hcCCCCCeeecCCCCCcEEEcCCCcccccccc
Q 041845           20 KEMILVYDCMARGTLRD-HLYNNHKPPLQWMWRLKICIGAARGLHYL-HTGTRNTIIHRDVKSTNILLDENWVAKHSRER   97 (143)
Q Consensus        20 ~~~~lv~e~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-h~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~   97 (143)
                      ..-+++|||+.+..+.. .+..   ..++......+..+++.++..+ |.   .+++|+|+++.||++.. +.+.+.||+
T Consensus        97 ~~~~lvME~Ig~~~~~~~~Lkd---~~~~~~~~~~i~~~i~~~l~~l~H~---~glVHGDLs~~NIL~~~-~~v~iIDF~  169 (197)
T cd05146          97 KKHVLVMSFIGDDQVPAPKLKD---AKLNDEEMKNAYYQVLSMMKQLYKE---CNLVHADLSEYNMLWHD-GKVWFIDVS  169 (197)
T ss_pred             cCCEEEEEEcCCCCccchhhhc---cccCHHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEEC-CcEEEEECC
Confidence            45678999997643322 2211   1334445566778999999988 76   89999999999999974 668899999


Q ss_pred             hhh
Q 041845           98 QLR  100 (143)
Q Consensus        98 ~~~  100 (143)
                      .+.
T Consensus       170 qav  172 (197)
T cd05146         170 QSV  172 (197)
T ss_pred             Cce
Confidence            753

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.68  E-value=1.4e-08  Score=73.05  Aligned_cols=78  Identities=18%  Similarity=0.133  Sum_probs=56.4

Q ss_pred             CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHH-HHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccc
Q 041845           19 NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR-GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRER   97 (143)
Q Consensus        19 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~   97 (143)
                      ....+++|||++++++.+....... ..+   ...++.+++. .+..+|.   .+++|+|++|.||++..++.+++.|||
T Consensus       230 ~~~~vLvmE~i~G~~L~~~~~~~~~-~~~---~~~ia~~~~~~~l~ql~~---~g~~H~D~hPgNilv~~~g~i~liDfG  302 (437)
T TIGR01982       230 TSERVLTMEWIDGIPLSDIAALDEA-GLD---RKALAENLARSFLNQVLR---DGFFHADLHPGNIFVLKDGKIIALDFG  302 (437)
T ss_pred             cCCceEEEEeECCcccccHHHHHhc-CCC---HHHHHHHHHHHHHHHHHh---CCceeCCCCcccEEECCCCcEEEEeCC
Confidence            3457899999999998876632211 111   2334444444 3567786   899999999999999999999999999


Q ss_pred             hhhccc
Q 041845           98 QLRLLG  103 (143)
Q Consensus        98 ~~~~~~  103 (143)
                      .....+
T Consensus       303 ~~~~l~  308 (437)
T TIGR01982       303 IVGRLS  308 (437)
T ss_pred             CeeECC
Confidence            875443

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.60  E-value=6.1e-08  Score=65.51  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             chhhhHhhhcCC-CHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcC-------CCccc
Q 041845           21 EMILVYDCMARG-TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDE-------NWVAK   92 (143)
Q Consensus        21 ~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~-------~~~~k   92 (143)
                      .-++|||++++. +|.+++........+......++.+++..+.-||+   .+++|+|+++.||+++.       ...+.
T Consensus       109 ~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~---~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~  185 (268)
T PRK15123        109 TSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHA---AGINHRDCYICHFLLHLPFPGREEDLKLS  185 (268)
T ss_pred             eeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH---CcCccCCCChhhEEEeccccCCCCCceEE
Confidence            467999999875 78888743222344456667889999999999998   99999999999999975       34567


Q ss_pred             ccccchhh
Q 041845           93 HSRERQLR  100 (143)
Q Consensus        93 ~~~~~~~~  100 (143)
                      +.|++...
T Consensus       186 LIDl~r~~  193 (268)
T PRK15123        186 VIDLHRAQ  193 (268)
T ss_pred             EEECCccc
Confidence            78887553

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.58  E-value=7.4e-08  Score=61.05  Aligned_cols=74  Identities=20%  Similarity=0.247  Sum_probs=56.8

Q ss_pred             eecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccc
Q 041845           16 HVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR   95 (143)
Q Consensus        16 ~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~   95 (143)
                      ..+++.-.|+|||.++..|.+.+...         ...++..+=.-+.-||.   .+++|+|+.++|+.+.... +-+.|
T Consensus        68 dvD~~~~~I~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~---~givHGDLTtsNiIl~~~~-i~~ID  134 (204)
T COG3642          68 DVDPDNGLIVMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHK---AGIVHGDLTTSNIILSGGR-IYFID  134 (204)
T ss_pred             EEcCCCCEEEEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHh---cCeecCCCccceEEEeCCc-EEEEE
Confidence            35677778999999998888888433         13344555556778996   9999999999999998665 77889


Q ss_pred             cchhhcc
Q 041845           96 ERQLRLL  102 (143)
Q Consensus        96 ~~~~~~~  102 (143)
                      ||++.+.
T Consensus       135 fGLg~~s  141 (204)
T COG3642         135 FGLGEFS  141 (204)
T ss_pred             CCccccc
Confidence            9987643

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=4.4e-08  Score=70.93  Aligned_cols=120  Identities=18%  Similarity=0.132  Sum_probs=92.1

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHH----HHhHhhcCCCCCeeecCCCC
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR----GLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~l~~lh~~~~~~i~h~~l~~   80 (143)
                      .|+|.++.+..+++++..++-+|.+. .++.++... ....++....+..+.+...    |+.++|+   ..++|.+++|
T Consensus       176 ~~~~~v~~~~~~e~~~~lfiqtE~~~-~sl~~~~~~-~~~~~p~~~l~~~~~~~~~~~~~al~~~hs---~~~~~~~~kp  250 (524)
T KOG0601|consen  176 SHENPVRDSPAWEGSGILFIQTELCG-ESLQSYCHT-PCNFLPDNLLWNSLRDWLSRDVTALSHLHS---NNIVHDDLKP  250 (524)
T ss_pred             ccccccccCcccccCCcceeeecccc-chhHHhhhc-ccccCCchhhhhHHhhhhhcccccccccCC---Ccccccccch
Confidence            48899998999999999999999996 577777632 2234566777777778777    9999998   8999999999


Q ss_pred             CcEEEcCC-Ccccccccchhh----------------------ccccccCCCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDEN-WVAKHSRERQLR----------------------LLGSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~-~~~k~~~~~~~~----------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      .|++...+ ...+.+||+...                      |+..+.....++...|++++|.+..+..+
T Consensus       251 ~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l  322 (524)
T KOG0601|consen  251 ANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAIL  322 (524)
T ss_pred             hheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHh
Confidence            99999988 556666766443                      22223344556788999999998877554

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=8.7e-08  Score=69.45  Aligned_cols=126  Identities=19%  Similarity=0.225  Sum_probs=94.7

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      .|.+++.+...|..-+..++--|||.+++.....  .-...++....+.+..|++.++.++|+   ...+|.|++|.||+
T Consensus       324 ~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~--~~~~~~d~~~~~~~~~q~~~~l~~i~s---~~~~~~d~~psni~  398 (524)
T KOG0601|consen  324 SHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRS--VTSQMLDEDPRLRLTAQILTALNVIHS---KLFVHLDVKPSNIL  398 (524)
T ss_pred             cccccCCCCCCccccccccCchhhhcCcchhhhh--HHHHhcCcchhhhhHHHHHhccccccc---hhhhccccccccee
Confidence            5788888888888888888999999988877655  222355667778889999999999997   88999999999999


Q ss_pred             EcCC-Ccccccccchhhc--------------cc-cccC--CCCCCCcccchhhhhhhhccccc-cCCCC
Q 041845           85 LDEN-WVAKHSRERQLRL--------------LG-SRIL--PAKLTEKSDVYSFGVLCARPAML-PMAEN  135 (143)
Q Consensus        85 ~~~~-~~~k~~~~~~~~~--------------~~-~~~~--~~~~~~~~Di~s~G~~~~~~~~~-~~~~~  135 (143)
                      ...+ +..++.++++...              .+ ..++  ...+..++|++|||.-+.+.+++ .++.+
T Consensus       399 i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~  468 (524)
T KOG0601|consen  399 ISNDGFFSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSES  468 (524)
T ss_pred             eccchhhhhccccccccccceecccccccccccccchhhccccccccccccccccccccccccCcccCcc
Confidence            9976 6667777776641              11 1111  22456789999999888887763 34433

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.51  E-value=6.7e-08  Score=69.69  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=92.3

Q ss_pred             CCCCCCCcceeeEEeec----CCchhhhHhhhcC-CCHHHHhhcC-------------CCCCCcHHHHHHHHHHHHHHHh
Q 041845            2 SNLRHRHLVSLIGHHVE----NKEMILVYDCMAR-GTLRDHLYNN-------------HKPPLQWMWRLKICIGAARGLH   63 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~----~~~~~lv~e~~~~-~~l~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~l~   63 (143)
                      +++.|+|+|++.++|..    +..+++|.+|.++ ++|.+.-...             .+...++...|.++.|+..|+.
T Consensus       328 kkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~  407 (655)
T KOG3741|consen  328 KKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALY  407 (655)
T ss_pred             HHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHH
Confidence            56789999999999873    4578999999874 4666644211             1235567889999999999999


Q ss_pred             HhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcccccc-CCCCCCCcccchhhhhhhhcccccc
Q 041845           64 YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRI-LPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        64 ~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      ++|+   .|+.-+-|.+.+|+++.+.+++++..|.--..-+.- ..-.--++-|.-.||.++.-++++.
T Consensus       408 sIHs---sGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~~~~le~~Qq~D~~~lG~ll~aLAt~~  473 (655)
T KOG3741|consen  408 SIHS---SGLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDPTEPLESQQQNDLRDLGLLLLALATGT  473 (655)
T ss_pred             HHHh---cCceeecccHhHeEeeCcceEEEecccceeeecCCCCcchhHHhhhhHHHHHHHHHHHhhcc
Confidence            9998   889889999999999988877776554322111110 1111124679999999999988863

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.44  E-value=2.8e-07  Score=60.11  Aligned_cols=75  Identities=25%  Similarity=0.263  Sum_probs=59.9

Q ss_pred             hhhhHhhhcCC-CHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCC---cccccccc
Q 041845           22 MILVYDCMARG-TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENW---VAKHSRER   97 (143)
Q Consensus        22 ~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~---~~k~~~~~   97 (143)
                      .+++||++++. +|.+++....  ..+......++.+++..+.-||+   .+++|+|+++.|||+..+.   .+.+.||+
T Consensus        92 s~lite~l~~~~~L~~~~~~~~--~~~~~~~~~ll~~l~~~i~~lH~---~gi~H~Dl~~~NILv~~~~~~~~~~lIDld  166 (206)
T PF06293_consen   92 SYLITEALPGAQDLRDLLQQWE--QLDPSQRRELLRALARLIAKLHD---AGIYHGDLNPSNILVDPDDGQYRFYLIDLD  166 (206)
T ss_pred             EEEEEEeCCCcccHHHHHHhhc--ccchhhHHHHHHHHHHHHHHHHH---CcCCCCCCCcccEEEeCCCCceeEEEEcch
Confidence            47899999864 7888885422  24456677888999999999998   9999999999999999876   67778887


Q ss_pred             hhhc
Q 041845           98 QLRL  101 (143)
Q Consensus        98 ~~~~  101 (143)
                      -...
T Consensus       167 ~~~~  170 (206)
T PF06293_consen  167 RMRF  170 (206)
T ss_pred             hcee
Confidence            5544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.43  E-value=1.6e-07  Score=58.94  Aligned_cols=79  Identities=16%  Similarity=0.049  Sum_probs=53.8

Q ss_pred             ceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCC--CCCeeecCCCCCcEEEcC
Q 041845           10 VSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGT--RNTIIHRDVKSTNILLDE   87 (143)
Q Consensus        10 v~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~--~~~i~h~~l~~~nil~~~   87 (143)
                      .+++...  ....+++|||+++.++...-          ........+++.++..||...  ...++|+|++|.|++++ 
T Consensus        56 P~~~~~~--~~~~~lv~e~i~G~~l~~~~----------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-  122 (170)
T cd05151          56 PKLYYFD--PETGVLITEFIEGSELLTED----------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-  122 (170)
T ss_pred             CceEEEe--CCCCeEEEEecCCCcccccc----------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-
Confidence            3445443  23357899999987764320          111334568889999999721  12259999999999999 


Q ss_pred             CCcccccccchhhc
Q 041845           88 NWVAKHSRERQLRL  101 (143)
Q Consensus        88 ~~~~k~~~~~~~~~  101 (143)
                      ++.+++.||+.+..
T Consensus       123 ~~~~~liDf~~a~~  136 (170)
T cd05151         123 DGRLWLIDWEYAGM  136 (170)
T ss_pred             CCeEEEEecccccC
Confidence            56788999986543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.41  E-value=1.8e-07  Score=68.68  Aligned_cols=74  Identities=14%  Similarity=-0.007  Sum_probs=49.3

Q ss_pred             CCchhhhHhhhcCCCHHHHhh-cCCCC---CCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCC----c
Q 041845           19 NKEMILVYDCMARGTLRDHLY-NNHKP---PLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENW----V   90 (143)
Q Consensus        19 ~~~~~lv~e~~~~~~l~~~~~-~~~~~---~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~----~   90 (143)
                      ....+++|||++++++.+.-. ...+.   .+.......++.|+       ..   .+++|+|++|.||+++.++    .
T Consensus       233 st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi-------f~---~GffHaDpHPGNIlv~~~g~~~~~  302 (537)
T PRK04750        233 CSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV-------FR---DGFFHADMHPGNIFVSYDPPENPR  302 (537)
T ss_pred             CCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH-------Hh---CCeeeCCCChHHeEEecCCCCCCe
Confidence            445679999999999977431 11110   12222223333333       33   7899999999999999887    8


Q ss_pred             ccccccchhhcc
Q 041845           91 AKHSRERQLRLL  102 (143)
Q Consensus        91 ~k~~~~~~~~~~  102 (143)
                      .++.|||.....
T Consensus       303 i~llDFGivg~l  314 (537)
T PRK04750        303 YIALDFGIVGSL  314 (537)
T ss_pred             EEEEecceEEEC
Confidence            899999976533

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.39  E-value=4.4e-07  Score=70.13  Aligned_cols=127  Identities=18%  Similarity=0.094  Sum_probs=88.1

Q ss_pred             CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEE
Q 041845            6 HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILL   85 (143)
Q Consensus         6 h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~   85 (143)
                      +|-+++..-.+......+++++|..++++...+....  .....-.......+.++..+||+   ..+.|++++|.|.+.
T Consensus       863 ~P~v~~~~~s~~~rsP~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s---~~r~h~~~~p~~~l~  937 (1205)
T KOG0606|consen  863 SPAVVRSFPSFPCRSPLPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHS---SLRKHRDLKPDSLLI  937 (1205)
T ss_pred             CCceecccCCCCCCCCcchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhcccc---chhhcccccccchhh
Confidence            3555544444455678999999999999998885432  23333344555667789999996   558999999999999


Q ss_pred             cCCCcccccccchhhcc-------------------------------------------------ccccCCCCCCCccc
Q 041845           86 DENWVAKHSRERQLRLL-------------------------------------------------GSRILPAKLTEKSD  116 (143)
Q Consensus        86 ~~~~~~k~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~D  116 (143)
                      ...+..+..++++....                                                 ++..++......+|
T Consensus       938 ~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad 1017 (1205)
T KOG0606|consen  938 AYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAAD 1017 (1205)
T ss_pred             cccCCcccCccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcch
Confidence            88877777776532210                                                 11111222345689


Q ss_pred             chhhhhhhhccccccCCCCcc
Q 041845          117 VYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       117 i~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|++|+.++|.+++..+++.+
T Consensus      1018 ~~~~g~~l~e~l~g~pp~na~ 1038 (1205)
T KOG0606|consen 1018 WWSSGVCLFEVLTGIPPFNAE 1038 (1205)
T ss_pred             hhhhhhhhhhhhcCCCCCCCc
Confidence            999999999999988777654

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.21  E-value=7.1e-07  Score=57.27  Aligned_cols=72  Identities=18%  Similarity=0.118  Sum_probs=44.6

Q ss_pred             chhhhHhhhc--CCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhH-hhcCCCCCeeecCCCCCcEEEcCCCcccccccc
Q 041845           21 EMILVYDCMA--RGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY-LHTGTRNTIIHRDVKSTNILLDENWVAKHSRER   97 (143)
Q Consensus        21 ~~~lv~e~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~   97 (143)
                      .-.+||||++  +..+.... ..   .+.......++.+++..+.. +|.   .+++|+|+++.||+++.+ .+.+.||+
T Consensus        80 ~~~ivME~I~~~G~~~~~l~-~~---~~~~~~~~~~~~~il~~~~~~~~~---~givHGDLs~~NIlv~~~-~~~iIDf~  151 (188)
T PF01163_consen   80 RNVIVMEYIGEDGVPLPRLK-DV---DLSPEEPKELLEEILEEIIKMLHK---AGIVHGDLSEYNILVDDG-KVYIIDFG  151 (188)
T ss_dssp             TTEEEEE--EETTEEGGCHH-HC---GGGGSTHHHHHHHHHHHHHHHHHC---TTEEESS-STTSEEEETT-CEEE--GT
T ss_pred             CCEEEEEecCCCccchhhHH-hc---cccchhHHHHHHHHHHHHHHHHHh---cCceecCCChhhEEeecc-eEEEEecC
Confidence            3578999998  54444333 11   11123345566666664444 566   899999999999999977 88899998


Q ss_pred             hhh
Q 041845           98 QLR  100 (143)
Q Consensus        98 ~~~  100 (143)
                      .+.
T Consensus       152 qav  154 (188)
T PF01163_consen  152 QAV  154 (188)
T ss_dssp             TEE
T ss_pred             cce
Confidence            653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK09902 hypothetical protein; Provisional

Probab=98.04  E-value=8.3e-06  Score=53.15  Aligned_cols=76  Identities=17%  Similarity=0.093  Sum_probs=59.0

Q ss_pred             hhhhHhhhcC-CCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCc--ccccccch
Q 041845           22 MILVYDCMAR-GTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWV--AKHSRERQ   98 (143)
Q Consensus        22 ~~lv~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~--~k~~~~~~   98 (143)
                      -++|+|-+++ .+|.+.+.+......+......+..+++.+++-||+   .++.|+|+.+.||+++..+.  +.+.|+..
T Consensus       100 A~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~---~Gv~Hgdly~khIll~~~g~~~v~lIDlEk  176 (216)
T PRK09902        100 ALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHS---VNRQHGCCYVRHIYVKTEGKAEAGFLDLEK  176 (216)
T ss_pred             EEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHhheeecCCCCeeEEEEEhhc
Confidence            5688886652 488888755433345666677889999999999998   99999999999999986665  77888765


Q ss_pred             hh
Q 041845           99 LR  100 (143)
Q Consensus        99 ~~  100 (143)
                      .+
T Consensus       177 ~r  178 (216)
T PRK09902        177 SR  178 (216)
T ss_pred             cc
Confidence            43

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.00  E-value=3.4e-06  Score=64.03  Aligned_cols=36  Identities=17%  Similarity=0.010  Sum_probs=29.5

Q ss_pred             ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845          101 LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       101 ~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      .+|+.+....++.++|||||||++|||+++..|+..
T Consensus       547 ~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~  582 (669)
T cd05610         547 LAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFND  582 (669)
T ss_pred             cCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            345556667789999999999999999998877754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.00  E-value=1.3e-05  Score=52.34  Aligned_cols=91  Identities=21%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             CcceeeEEeecC---CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcC----------------
Q 041845            8 HLVSLIGHHVEN---KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTG----------------   68 (143)
Q Consensus         8 niv~~~~~~~~~---~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~----------------   68 (143)
                      ++.+++.+....   +..+++||++++.++.+.+..   ..++......++.+++..+..+|+.                
T Consensus        58 ~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~  134 (223)
T cd05154          58 PVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGY  134 (223)
T ss_pred             CCCCEEEECCCCCccCCceEEEEEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCch
Confidence            456666665543   256899999988766554311   1334444445555555555555531                


Q ss_pred             -------------------------------------CCCCeeecCCCCCcEEEcC--CCcccccccchhhc
Q 041845           69 -------------------------------------TRNTIIHRDVKSTNILLDE--NWVAKHSRERQLRL  101 (143)
Q Consensus        69 -------------------------------------~~~~i~h~~l~~~nil~~~--~~~~k~~~~~~~~~  101 (143)
                                                           ....++|+|+.+.|++++.  ++.+.+.||+.+..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         135 LERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                                                 1245799999999999988  55677889876543

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.94  E-value=5.2e-06  Score=54.38  Aligned_cols=65  Identities=15%  Similarity=0.205  Sum_probs=48.4

Q ss_pred             chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchh
Q 041845           21 EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQL   99 (143)
Q Consensus        21 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~   99 (143)
                      ..+++|||++|..+.+..      .++.    .+...++.++.-+|+   .|+.|+|.+|.|++++.++ +++.|++..
T Consensus       117 ~~~ll~EYIeG~~l~d~~------~i~e----~~~~ki~~~ikqlH~---~G~~HGD~hpgNFlv~~~~-i~iID~~~k  181 (229)
T PF06176_consen  117 SYVLLMEYIEGVELNDIE------DIDE----DLAEKIVEAIKQLHK---HGFYHGDPHPGNFLVSNNG-IRIIDTQGK  181 (229)
T ss_pred             EEEEEEEEecCeecccch------hcCH----HHHHHHHHHHHHHHH---cCCccCCCCcCcEEEECCc-EEEEECccc
Confidence            456899999997776543      1221    233456678899997   9999999999999999655 778888643

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.88  E-value=7.1e-06  Score=61.11  Aligned_cols=72  Identities=25%  Similarity=0.268  Sum_probs=54.8

Q ss_pred             HHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhccc---------------------------cccC
Q 041845           55 CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG---------------------------SRIL  107 (143)
Q Consensus        55 ~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~---------------------------~~~~  107 (143)
                      +.+++.|+.++|.  +.+++|+++.|++|.++.++..|+..|+......                           +...
T Consensus       105 l~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhcc--CcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            4456689999997  6789999999999999999999988776543221                           1122


Q ss_pred             CCCCCCcccchhhhhhhhccc
Q 041845          108 PAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus       108 ~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      ....+.++|++|+|+++|.+.
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~  203 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIY  203 (700)
T ss_pred             cccccccccceeeeeEEEEEe
Confidence            233467899999999988766

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.86  E-value=2e-05  Score=50.67  Aligned_cols=93  Identities=18%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             CCCC-CCcceeeEEeecCCchhhhHhhhcCCCHHHHhhc-CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            3 NLRH-RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         3 ~l~h-~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      .+++ +++.+++|.|-    ..+++|+...+++...... ..-...+|..+..++.+++..+.+++......+.-.|+++
T Consensus        15 ~l~~~~~~pk~lG~CG----~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~   90 (188)
T PF12260_consen   15 LLQGSEPFPKLLGSCG----RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSP   90 (188)
T ss_pred             HcCCCCCCCCeeeECC----CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecch
Confidence            3444 58999999993    3568898876654321000 0112457899999999999999999864434566799999


Q ss_pred             CcEEEcCCCcccccccchh
Q 041845           81 TNILLDENWVAKHSRERQL   99 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~   99 (143)
                      +|+.+++++.+|+.|....
T Consensus        91 ~nfgv~~~~~lk~iDld~v  109 (188)
T PF12260_consen   91 DNFGVNDDGRLKLIDLDDV  109 (188)
T ss_pred             HHeEEeCCCcEEEEechhc
Confidence            9999999999999987654

Proteins in this uncharacterised family are described as transmembrane proteins.

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.66  E-value=0.00012  Score=52.53  Aligned_cols=84  Identities=15%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCccccccc----------------chhhccccccC
Q 041845           44 PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRE----------------RQLRLLGSRIL  107 (143)
Q Consensus        44 ~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~----------------~~~~~~~~~~~  107 (143)
                      ....|...+...+.++.+..-||.   .|..-+|++++|+++++.+.+.+.|-                |...+.|++..
T Consensus       112 P~~~w~fllrvaRnlA~aFA~lH~---~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ  188 (637)
T COG4248         112 PHCAWDFLLRVARNLASAFATLHE---HGHVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQ  188 (637)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHh---cCCcccccCccceeeecCceEEEEcccceeeccCCceEecccCccccCCHHHh
Confidence            456789999999999999999997   88889999999999999887776542                22223333322


Q ss_pred             ------CCCCCCcccchhhhhhhhccccc
Q 041845          108 ------PAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus       108 ------~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                            +..-+...|.+.+|+++++++++
T Consensus       189 ~~~sf~g~~r~~~hD~FGLavLiF~lL~g  217 (637)
T COG4248         189 TLPSFVGFERTANHDNFGLAVLIFHLLFG  217 (637)
T ss_pred             ccccccccCCCccccchhHHHHHHHHHhc
Confidence                  22345678999999999998885

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.30  E-value=0.00024  Score=48.03  Aligned_cols=70  Identities=17%  Similarity=0.027  Sum_probs=47.2

Q ss_pred             CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchh
Q 041845           20 KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQL   99 (143)
Q Consensus        20 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~   99 (143)
                      +...++||+.++..|...-       ++......++..|+.-+.-.-.   .+++|+|+++=||+++++|.+.+.|+-++
T Consensus       180 nRHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~---~GiVHGDlSefNIlV~~dg~~~vIDwPQ~  249 (304)
T COG0478         180 NRHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYR---RGIVHGDLSEFNILVTEDGDIVVIDWPQA  249 (304)
T ss_pred             ccceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHH---cCccccCCchheEEEecCCCEEEEeCccc
Confidence            4567999999886554322       1222233344444444433333   89999999999999999999999998544

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.03  E-value=0.00051  Score=50.73  Aligned_cols=77  Identities=14%  Similarity=0.077  Sum_probs=50.7

Q ss_pred             cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHH-HhHhhcCCCCCeeecCCCCCcEEEcCCCccccccc
Q 041845           18 ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARG-LHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRE   96 (143)
Q Consensus        18 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~   96 (143)
                      -.+.-.++|||++|..+.+...-.. ...+.   +.++..++.+ +..+-   +.+.+|.|..|.|+++..++..-..||
T Consensus       237 ~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~---k~ia~~~~~~f~~q~~---~dgffHaDpHpGNi~v~~~g~i~~lDf  309 (517)
T COG0661         237 YTTRRVLTMEWIDGIKISDIAALKS-AGIDR---KELAELLVRAFLRQLL---RDGFFHADPHPGNILVRSDGRIVLLDF  309 (517)
T ss_pred             ccCCcEEEEEeeCCEecccHHHHHh-cCCCH---HHHHHHHHHHHHHHHH---hcCccccCCCccceEEecCCcEEEEcC
Confidence            3566789999999988877742221 23331   2222222222 12222   268999999999999999999999999


Q ss_pred             chhhc
Q 041845           97 RQLRL  101 (143)
Q Consensus        97 ~~~~~  101 (143)
                      |.-..
T Consensus       310 Gi~g~  314 (517)
T COG0661         310 GIVGR  314 (517)
T ss_pred             cceec
Confidence            97543

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=96.74  E-value=0.012  Score=39.12  Aligned_cols=30  Identities=13%  Similarity=0.133  Sum_probs=25.1

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+.|.|++++.++ ..+.|++.+..
T Consensus       153 ~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       153 STCLHGDFQIGNLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             CceEecCCCCCcEEEcCCC-cEEEechhcCc
Confidence            4578999999999999877 88999986543

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=96.73  E-value=0.0047  Score=41.17  Aligned_cols=31  Identities=19%  Similarity=0.200  Sum_probs=25.8

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+.|.|++++.+....+.|++.+.+
T Consensus       163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             eEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence            4589999999999999877778999876543

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.43  E-value=0.0024  Score=42.85  Aligned_cols=73  Identities=16%  Similarity=0.138  Sum_probs=48.0

Q ss_pred             hhhhHhhhcCC-CHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           22 MILVYDCMARG-TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        22 ~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      -.++|||+... .-.-.+   ............+..+++..+.-|-.  ..+++|+||+.=|||+. ++.+.+.|++.+.
T Consensus       141 nVLvMEfIg~~g~pAP~L---kDv~~e~~e~~~~~~~~v~~~~~l~~--~a~LVHgDLSEyNiL~~-~~~p~iID~~QaV  214 (268)
T COG1718         141 NVLVMEFIGDDGLPAPRL---KDVPLELEEAEGLYEDVVEYMRRLYK--EAGLVHGDLSEYNILVH-DGEPYIIDVSQAV  214 (268)
T ss_pred             CeEEEEeccCCCCCCCCc---ccCCcCchhHHHHHHHHHHHHHHHHH--hcCcccccchhhheEEE-CCeEEEEECcccc
Confidence            46789988542 111111   11222222455666677777766553  37899999999999999 7888999998764

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=96.22  E-value=0.023  Score=36.97  Aligned_cols=75  Identities=23%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcC------CCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMAR------GTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      ..+.+|.+++|+.+++...-+|+|....      .+|.+++...   .++. .....+.++   ..++-+   ..|+.+|
T Consensus        74 ~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~---~~~~-~~~~~L~~f---~~~l~~---~~Iv~~d  143 (199)
T PF10707_consen   74 VDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEG---GLTE-ELRQALDEF---KRYLLD---HHIVIRD  143 (199)
T ss_pred             CcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcC---CccH-HHHHHHHHH---HHHHHH---cCCeecC
Confidence            4578999999999998888888887643      3677777432   3333 333333333   345554   6799999


Q ss_pred             CCCCcEEEcCC
Q 041845           78 VKSTNILLDEN   88 (143)
Q Consensus        78 l~~~nil~~~~   88 (143)
                      ++|.||++...
T Consensus       144 l~~~NIv~~~~  154 (199)
T PF10707_consen  144 LNPHNIVVQRR  154 (199)
T ss_pred             CCcccEEEEec
Confidence            99999999754

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=95.85  E-value=0.0081  Score=44.70  Aligned_cols=74  Identities=12%  Similarity=0.054  Sum_probs=45.6

Q ss_pred             CCchhhhHhhhcCCCHHHH--hhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcC----CCccc
Q 041845           19 NKEMILVYDCMARGTLRDH--LYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDE----NWVAK   92 (143)
Q Consensus        19 ~~~~~lv~e~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~----~~~~k   92 (143)
                      .....++|||++|..+.+.  +.+.   .++-..+...+.+...-+-+ +    .|.+|+|-.|.||++..    +..+.
T Consensus       274 st~RVLtME~~~G~~i~Dl~~i~~~---gi~~~~i~~~l~~~~~~qIf-~----~GffHaDPHPGNilv~~~~~~~~~iv  345 (538)
T KOG1235|consen  274 STKRVLTMEYVDGIKINDLDAIDKR---GISPHDILNKLVEAYLEQIF-K----TGFFHADPHPGNILVRPNPEGDEEIV  345 (538)
T ss_pred             CcceEEEEEecCCccCCCHHHHHHc---CCCHHHHHHHHHHHHHHHHH-h----cCCccCCCCCCcEEEecCCCCCccEE
Confidence            3467899999998766554  3222   22222222222222222222 2    67999999999999994    45677


Q ss_pred             ccccchhh
Q 041845           93 HSRERQLR  100 (143)
Q Consensus        93 ~~~~~~~~  100 (143)
                      +.|+|+..
T Consensus       346 llDhGl~~  353 (538)
T KOG1235|consen  346 LLDHGLYA  353 (538)
T ss_pred             EEcccccc
Confidence            78888654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=95.58  E-value=0.0063  Score=46.10  Aligned_cols=113  Identities=18%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             CCCCCCCC-cceeeEEeecCCchhhhHhhhcCC-CHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRH-LVSLIGHHVENKEMILVYDCMARG-TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~n-iv~~~~~~~~~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |.+++||| .+..++-+......++.++++..+ +..... ......+...+...+.+.-..+++++|+   ..-+|+| 
T Consensus       287 LdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~-~~se~~~~~~~~~~~~r~et~~l~~l~~---~~~~~~d-  361 (829)
T KOG0576|consen  287 LDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEM-TVSEIALEQYQFAYPLRKETRPLAELHS---SYKVHRD-  361 (829)
T ss_pred             HHHccCCCCcccccccCCcccccchhhhhhcCCccccccC-ChhhHhhhhhhhhhhhhhhccccccccc---ccccCcc-
Confidence            45678999 777777777788899999999776 222211 1111233344455556666778889986   3346776 


Q ss_pred             CCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhh
Q 041845           79 KSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGV  122 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~  122 (143)
                         ||+.++ +..+..+++...-                 .++......+..+.|.|+.|.
T Consensus       362 ---~~l~s~-~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~  418 (829)
T KOG0576|consen  362 ---NILGSE-EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAV  418 (829)
T ss_pred             ---cccccc-cccccccccCCcccCcccccccCCCCCCCCCchhhcccccccCCCccCCCc
Confidence               565543 4455555554321                 122233445667889999996

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=94.06  E-value=0.096  Score=37.14  Aligned_cols=67  Identities=13%  Similarity=-0.003  Sum_probs=45.1

Q ss_pred             CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccc
Q 041845           20 KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRER   97 (143)
Q Consensus        20 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~   97 (143)
                      +..++|||+..+-+|.+.-.     ..+..++..   .+..-+.-|..   .|++|+|.+-=||++.+++.+++.||=
T Consensus       181 ~RH~Vvmelv~g~Pl~~v~~-----v~d~~~ly~---~lm~~Iv~la~---~GlIHgDFNEFNimv~dd~~i~vIDFP  247 (465)
T KOG2268|consen  181 NRHCVVMELVDGYPLRQVRH-----VEDPPTLYD---DLMGLIVRLAN---HGLIHGDFNEFNIMVKDDDKIVVIDFP  247 (465)
T ss_pred             cceeeHHHhhcccceeeeee-----cCChHHHHH---HHHHHHHHHHH---cCceecccchheeEEecCCCEEEeech
Confidence            45688999998877765331     112233332   22333344443   899999999999999998888888874

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=93.97  E-value=0.044  Score=39.23  Aligned_cols=72  Identities=17%  Similarity=0.059  Sum_probs=49.6

Q ss_pred             CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchh
Q 041845           20 KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQL   99 (143)
Q Consensus        20 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~   99 (143)
                      ...|++|++- ++++..+-      ...+.+...++.+.+..+.-+-.  +-..-||++...||+++ +|++.+.||.++
T Consensus       299 ~y~yl~~kdh-gt~is~ik------~~~~~e~lsff~s~~sil~~lek--kf~fehrnlt~~niLId-~GnvtLIDfkls  368 (488)
T COG5072         299 LYLYLHFKDH-GTPISIIK------ADRSEEELSFFWSCISILDILEK--KFPFEHRNLTLDNILID-EGNVTLIDFKLS  368 (488)
T ss_pred             eEEEEEEecC-Cceeeeee------cccHHHHHHHHHHHHHHHhhhhh--cCCcccccccccceeee-cCceEEEEeeee
Confidence            3456666655 33443211      23467777887776665555543  34678999999999999 899999999887


Q ss_pred             hc
Q 041845          100 RL  101 (143)
Q Consensus       100 ~~  101 (143)
                      ++
T Consensus       369 Rl  370 (488)
T COG5072         369 RL  370 (488)
T ss_pred             ec
Confidence            64

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=93.89  E-value=0.14  Score=33.90  Aligned_cols=31  Identities=23%  Similarity=0.178  Sum_probs=25.4

Q ss_pred             CCeeecCCCCCcEEEcC-CCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDE-NWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~-~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+.+.||+++. ++.+.+.|+..+.+
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~  201 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGY  201 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCCc
Confidence            46899999999999997 46788899875543

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PRK05231 homoserine kinase; Provisional

Probab=93.81  E-value=0.043  Score=38.12  Aligned_cols=30  Identities=17%  Similarity=0.202  Sum_probs=25.1

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      .+++|+|+.+.|++++.+....+.||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             cccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            589999999999999976656788987654

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=93.76  E-value=0.054  Score=35.99  Aligned_cols=30  Identities=17%  Similarity=0.198  Sum_probs=24.7

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.|++++.+....+.||+.+.
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            458999999999999876666788988653

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=93.67  E-value=0.2  Score=40.86  Aligned_cols=64  Identities=19%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             CCCCCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            2 SNLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      +.+.|+|++.++.+-.++.    ...+..+++...++.+.+...  ...+..+...+..+...++.++|+
T Consensus       237 ~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v--~~i~~~~~r~~~~~~~~GL~~~h~  304 (1351)
T KOG1035|consen  237 SKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSV--GSIPLETLRILHQKLLEGLAYLHS  304 (1351)
T ss_pred             HhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhc--cccCHHHHHHHHHHHhhhHHHHHH
Confidence            4578999999988865433    344667888888888877433  366778888888899999999997

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=93.36  E-value=0.046  Score=40.86  Aligned_cols=40  Identities=23%  Similarity=0.367  Sum_probs=30.5

Q ss_pred             CCCCCCCCcceeeEEeecC-CchhhhHhhhcCCCHHHHhhcC
Q 041845            1 LSNLRHRHLVSLIGHHVEN-KEMILVYDCMARGTLRDHLYNN   41 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~   41 (143)
                      |+++.|+|...++++.... ....+|+|++. .++.+....+
T Consensus        36 lktl~~~~l~~yl~~~r~~~~r~IVV~e~~~-~Sled~~~~~   76 (725)
T KOG1093|consen   36 LKSLQHDNLCQYLDFSRGKHERVIVVMEHYT-MSLEDILKTG   76 (725)
T ss_pred             HHhhcCccceeeEeeecCccceEEEEehhhc-cchHHHHHhc
Confidence            4678999999998877643 34668899995 4999988544

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=93.31  E-value=0.05  Score=35.53  Aligned_cols=33  Identities=21%  Similarity=0.154  Sum_probs=21.3

Q ss_pred             CCCeeecCCCCCcEEEc-CCCcccccccchhhcc
Q 041845           70 RNTIIHRDVKSTNILLD-ENWVAKHSRERQLRLL  102 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~-~~~~~k~~~~~~~~~~  102 (143)
                      ...++|+|+.+.|++++ .++.+.+.||+.+...
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~~  198 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGWG  198 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-EEE
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccceEC
Confidence            35789999999999999 5555578899865443

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=93.20  E-value=0.059  Score=36.99  Aligned_cols=30  Identities=20%  Similarity=0.173  Sum_probs=25.4

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      .+++|+|+.|.|++++.+....+.||+.+.
T Consensus       175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         175 RGVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             CcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            568999999999999987767888987654

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=92.97  E-value=0.31  Score=33.61  Aligned_cols=31  Identities=19%  Similarity=0.038  Sum_probs=25.6

Q ss_pred             CCCeeecCCCCCcEEEcCC----Ccccccccchhh
Q 041845           70 RNTIIHRDVKSTNILLDEN----WVAKHSRERQLR  100 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~----~~~k~~~~~~~~  100 (143)
                      ...++|+|+.+.||+++.+    +.+.+.||..+.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            3578999999999999874    778899987654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=92.68  E-value=0.085  Score=36.55  Aligned_cols=30  Identities=23%  Similarity=0.192  Sum_probs=25.7

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      .+++|+|+.+.|++++.++...+.||+.+.
T Consensus       187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            689999999999999988766788987653

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=92.47  E-value=0.097  Score=33.89  Aligned_cols=33  Identities=15%  Similarity=0.044  Sum_probs=25.3

Q ss_pred             CCeeecCCCCCcEEEcCCC-----cccccccchhhccc
Q 041845           71 NTIIHRDVKSTNILLDENW-----VAKHSRERQLRLLG  103 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~-----~~k~~~~~~~~~~~  103 (143)
                      ..++|+|+.+.|+++..++     .+.+.||..+.+.+
T Consensus       120 ~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~  157 (196)
T smart00587      120 NVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGS  157 (196)
T ss_pred             eEEeeCCCCccceeeccCCCCCccceEEEecccCCcCC
Confidence            5689999999999998543     46788887665443

subfamily of choline kinases

>PHA03111 Ser/Thr kinase; Provisional

Probab=92.17  E-value=0.44  Score=33.96  Aligned_cols=42  Identities=19%  Similarity=0.091  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHhHhhcCC-CCCeeecCCCCCcEEEcCCCc
Q 041845           49 MWRLKICIGAARGLHYLHTGT-RNTIIHRDVKSTNILLDENWV   90 (143)
Q Consensus        49 ~~~~~~~~~i~~~l~~lh~~~-~~~i~h~~l~~~nil~~~~~~   90 (143)
                      ...+.++.||+.-.-..-... ....+|-||||.|||+.+...
T Consensus       279 ~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~  321 (444)
T PHA03111        279 EYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDE  321 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCC
Confidence            456777888876543332211 346899999999999976643

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=91.99  E-value=0.18  Score=33.91  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             HHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccc
Q 041845           60 RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRER   97 (143)
Q Consensus        60 ~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~   97 (143)
                      .++.-.|+. ..+.+|+|..|+||+-++.|..|+.|=+
T Consensus       152 ~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~  188 (308)
T PF07387_consen  152 KDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPV  188 (308)
T ss_pred             HHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChh
Confidence            456666742 3578999999999999999999988743

The function of this family is unknown.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=91.91  E-value=0.49  Score=33.45  Aligned_cols=29  Identities=24%  Similarity=0.334  Sum_probs=24.9

Q ss_pred             eeecCCCCCcEEEcCCCc-ccccccchhhc
Q 041845           73 IIHRDVKSTNILLDENWV-AKHSRERQLRL  101 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~-~k~~~~~~~~~  101 (143)
                      ++|+|+.+.|++++.+.. ..+.||+.+.+
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEcccccc
Confidence            999999999999998774 78889987653

>TIGR02721 ycfN_thiK thiamine kinase

Probab=91.69  E-value=0.15  Score=34.34  Aligned_cols=29  Identities=17%  Similarity=0.087  Sum_probs=23.4

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.|++++.++ ..+.|+..+.
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccC
Confidence            3589999999999999766 6788876543

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=91.35  E-value=0.17  Score=34.99  Aligned_cols=29  Identities=21%  Similarity=0.087  Sum_probs=23.8

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      .+++|+|+.+.|++++. +.+.+.||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            57899999999999987 556788887554

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=91.20  E-value=0.058  Score=45.47  Aligned_cols=126  Identities=13%  Similarity=0.030  Sum_probs=80.1

Q ss_pred             CCCCCCcceeeEEee--cCCchhhhHhhhcCCCHHHHhhcCCCCCCcH-HHHHHHHHHH-HHHHhHhhcCCC--CCeeec
Q 041845            3 NLRHRHLVSLIGHHV--ENKEMILVYDCMARGTLRDHLYNNHKPPLQW-MWRLKICIGA-ARGLHYLHTGTR--NTIIHR   76 (143)
Q Consensus         3 ~l~h~niv~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~i-~~~l~~lh~~~~--~~i~h~   76 (143)
                      +.+|+++.....-..  ++...+..++++..|.+.+.+.++....-+. ...+...+++ +.+..-+|+...  +-.+|+
T Consensus      1285 ~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~ 1364 (2724)
T KOG1826|consen 1285 EAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSK 1364 (2724)
T ss_pred             hhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhh
Confidence            456777776655443  3456899999999999999986553322222 2234444444 444444443111  235789


Q ss_pred             CCCCCcEEEcCCCcccccccchhhccccc-------cC-----------CCCCCCcccchhhhhhhhccc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRLLGSR-------IL-----------PAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~~~~~-------~~-----------~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      ++++-|.++..+..++..++|+.+.-.+.       ..           .-.++.++|+|..|+-+|+..
T Consensus      1365 ~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs 1434 (2724)
T KOG1826|consen 1365 SLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRS 1434 (2724)
T ss_pred             hhhhhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            99999999998888888888876621111       11           113566699999888777654

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=90.78  E-value=0.33  Score=31.69  Aligned_cols=31  Identities=19%  Similarity=0.174  Sum_probs=20.7

Q ss_pred             CCeeecCCCCCcEEE-cCCCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILL-DENWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~-~~~~~~k~~~~~~~~~  101 (143)
                      ...+|+|+.+.||++ ..++.+++.||.-+.+
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            357899999999999 7888999999976543

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=90.68  E-value=0.62  Score=31.89  Aligned_cols=29  Identities=17%  Similarity=0.045  Sum_probs=25.2

Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      -++|+|+.|.|++.++.+...+.|+.-+.
T Consensus       154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg  182 (269)
T COG0510         154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAG  182 (269)
T ss_pred             eeecCCCCccceEEcCCCcEEEEecccCC
Confidence            58999999999999998999999986443

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=90.53  E-value=0.25  Score=33.84  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=24.0

Q ss_pred             CCeeecCCCCCcEEEcCCC-cccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDENW-VAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~-~~k~~~~~~~~~  101 (143)
                      ..++|+|+.+.|++++.++ ..-+.|++.+..
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            4689999999999999744 345788876543

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=90.48  E-value=0.15  Score=35.34  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                      .+++|+|+.+.|++++.++...+.||..+.+.+
T Consensus       196 ~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~d~  228 (309)
T TIGR02904       196 TVLVHGKLSLSHFLYDETRGGYFINFEKASFAS  228 (309)
T ss_pred             eeeeCCCCcHHhEEEcCCCCEEEEEhhhcccCC
Confidence            579999999999999988888888887665443

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PRK10271 thiK thiamine kinase; Provisional

Probab=89.62  E-value=0.26  Score=31.84  Aligned_cols=28  Identities=14%  Similarity=0.090  Sum_probs=23.1

Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..+|+|+.|.|+++++++ .++.|++.+.
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~  105 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAG  105 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCccc
Confidence            468999999999998777 7788987543

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=89.29  E-value=0.79  Score=32.84  Aligned_cols=42  Identities=19%  Similarity=0.090  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHhHhhcC-CCCCeeecCCCCCcEEEcCCCc
Q 041845           49 MWRLKICIGAARGLHYLHTG-TRNTIIHRDVKSTNILLDENWV   90 (143)
Q Consensus        49 ~~~~~~~~~i~~~l~~lh~~-~~~~i~h~~l~~~nil~~~~~~   90 (143)
                      ...+.++.||+.-.--.-.. .....+|-||||.|||+.+...
T Consensus       275 ~YvkfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~  317 (434)
T PF05445_consen  275 EYVKFIFLQIALLYIKIYELPCCTNFLHVDLKPDNILIFDSKE  317 (434)
T ss_pred             HHHHHHHHHHHHHHeeeecCCCcceeeecccCcCcEEEecCCC
Confidence            44566777775433112221 1246899999999999976643

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=89.18  E-value=0.76  Score=33.40  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=25.6

Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                      ...++|+|+.+.||++..+ .+++.|+..+.+.+
T Consensus       222 ~~~l~HgDl~~gni~~~~~-~~~viD~E~a~~G~  254 (401)
T PRK09550        222 AEALLHGDLHTGSIFVTEE-ETKVIDPEFAFYGP  254 (401)
T ss_pred             CCceeeccCCcccEEeeCC-CcEEEeccccccCC
Confidence            4679999999999999865 57888887554433

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=88.40  E-value=0.28  Score=33.71  Aligned_cols=33  Identities=21%  Similarity=0.097  Sum_probs=25.1

Q ss_pred             CCeeecCCCCCcEEEcCCC-----cccccccchhhccc
Q 041845           71 NTIIHRDVKSTNILLDENW-----VAKHSRERQLRLLG  103 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~-----~~k~~~~~~~~~~~  103 (143)
                      +-++|||+.+.|+++..++     .+.+.||...++.+
T Consensus       215 ~vl~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~~g~  252 (294)
T PF02958_consen  215 NVLCHGDFWTNNILFKYDDDGKPIDVVLIDFQLARYGS  252 (294)
T ss_pred             eEEEcCccCHHhEeEccccccccccceeeccccccCCC
Confidence            4589999999999997553     46788887665543

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PLN02236 choline kinase

Probab=87.90  E-value=1.3  Score=31.52  Aligned_cols=30  Identities=20%  Similarity=0.198  Sum_probs=24.1

Q ss_pred             CCeeecCCCCCcEEEcC-CCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDE-NWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~-~~~~k~~~~~~~~  100 (143)
                      ..++|+|+++.||++++ ++.+.+.|+..+.
T Consensus       200 ~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~  230 (344)
T PLN02236        200 IGFCHNDLQYGNIMIDEETRAITIIDYEYAS  230 (344)
T ss_pred             ceEEeCCCCcCcEEEeCCCCcEEEEeehhcc
Confidence            46799999999999986 3568888886554

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=87.73  E-value=0.56  Score=33.01  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=26.2

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+++.|++++.....-+.|++...+
T Consensus       198 ~~lvHGD~~~gNlii~~~~~~gVlDwe~~~l  228 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGRPTGVLDWELATL  228 (321)
T ss_pred             ceeeeCCcccCCEEEeCCCeeEEEecccccc
Confidence            4689999999999999888888888876654

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=86.65  E-value=0.89  Score=32.63  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=25.0

Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                      ...++|+|+.+.||+++.+. .++.|+..+.+.+
T Consensus       191 ~~~llHGDl~~gNi~~~~~~-~~~iD~e~~~~G~  223 (370)
T TIGR01767       191 AETLLHGDLHSGSIFVSEHE-TKVIDPEFAFYGP  223 (370)
T ss_pred             cceeeeccCCcccEEEcCCC-CEEEcCcccccCc
Confidence            45789999999999997654 6677876554433

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PRK06148 hypothetical protein; Provisional

Probab=85.66  E-value=1.5  Score=35.84  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=24.2

Q ss_pred             CCeeecCCCCCcEEEcCCC---cccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENW---VAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~---~~k~~~~~~~~  100 (143)
                      .+++|+|+++.||+++.+.   ..-+.|||...
T Consensus       203 ~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        203 AQVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             cceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            6799999999999999764   34478998654

>PRK12396 5-methylribose kinase; Reviewed

Probab=85.38  E-value=0.91  Score=33.02  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=24.7

Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                      ...++|+|+.|.||+++.+ ..|+.|-.++.+.|
T Consensus       226 ~~aLlHGDlHtGSI~v~~~-~~kvIDpEFAfyGP  258 (409)
T PRK12396        226 AQALIHGDLHTGSVFVKND-STKVIDPEFAFYGP  258 (409)
T ss_pred             chhhccCcCCCCCEEecCC-ceEEEcccccccCC
Confidence            4578999999999999975 46777765554433

>PRK11768 serine/threonine protein kinase; Provisional

Probab=84.94  E-value=0.53  Score=33.06  Aligned_cols=30  Identities=20%  Similarity=0.164  Sum_probs=23.9

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~  102 (143)
                      .+++|+|+.+.|++++ + ...+.||+.+...
T Consensus       196 ~~liHgD~h~~NvL~~-d-~~~iIDFDd~~~g  225 (325)
T PRK11768        196 LLRLHGDCHPGNILWR-D-GPHFVDLDDARMG  225 (325)
T ss_pred             ccceecCCCchhcccc-C-CcEEEeCCCCCCC
Confidence            5789999999999995 3 5678899866543

>PLN02756 S-methyl-5-thioribose kinase

Probab=84.41  E-value=1.8  Score=31.65  Aligned_cols=31  Identities=6%  Similarity=0.185  Sum_probs=23.6

Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~  101 (143)
                      ...++|+|+.+.||+++.++ .++.|-.++.+
T Consensus       229 ~~~L~HGDl~~g~i~~~~~~-~~~id~ef~~~  259 (418)
T PLN02756        229 AQALVHGDLHTGSVMVTPDS-TQVIDPEFAFY  259 (418)
T ss_pred             ccceeecCCCCCcEEEcCCC-ceEecchhhcc
Confidence            46799999999999999765 66666554443

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=82.84  E-value=1.1  Score=31.57  Aligned_cols=29  Identities=21%  Similarity=0.130  Sum_probs=23.2

Q ss_pred             CeeecCCCCCcEEEcC-CCcccccccchhh
Q 041845           72 TIIHRDVKSTNILLDE-NWVAKHSRERQLR  100 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~-~~~~k~~~~~~~~  100 (143)
                      -.+|+|+.+.||++++ ++.+++.||.-+.
T Consensus       183 v~CHnDl~~~NiL~~~~~~~l~lID~EYag  212 (330)
T PLN02421        183 VFAHNDLLSGNLMLNEDEGKLYFIDFEYGS  212 (330)
T ss_pred             EEEECCCCcccEEEeCCCCcEEEEcccccC
Confidence            3689999999999974 4678888886543

>PRK06149 hypothetical protein; Provisional

Probab=82.74  E-value=2.2  Score=34.74  Aligned_cols=31  Identities=13%  Similarity=0.055  Sum_probs=24.1

Q ss_pred             CCCeeecCCCCCcEEEcCCC--c---ccccccchhh
Q 041845           70 RNTIIHRDVKSTNILLDENW--V---AKHSRERQLR  100 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~--~---~k~~~~~~~~  100 (143)
                      +.+++|+|+++.|++++.+.  .   ..+.|||...
T Consensus       207 ~~g~IH~Dl~~~Nilv~~~~~~~~~v~giIDFgD~~  242 (972)
T PRK06149        207 PLQAVHLDITDDNVVGSRDADGRWQPDGVIDFGDLV  242 (972)
T ss_pred             cccccCCCCCcccEEEcCCCCCCcceeEEEEcccch
Confidence            36899999999999998652  2   3578888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-28
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-28
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-18
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		8e-18
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		8e-18
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		9e-17
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		4e-15
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		4e-15
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		8e-10
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		9e-10
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-09
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-09
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-09
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		4e-09
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		4e-08
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		7e-08
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		8e-08
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		8e-08
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		9e-08
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		3e-07
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		4e-07
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		4e-07
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		4e-07
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		4e-07
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		4e-07
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		4e-07
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		4e-07
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		4e-07
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		5e-07
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		6e-07
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		7e-07
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		7e-07
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		7e-07
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		1e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		1e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-06
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		2e-06
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		3e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-06
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-06
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		4e-06
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		5e-06
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		5e-06
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		5e-06
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		5e-06
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		5e-06
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		5e-06
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		5e-06
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		5e-06
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		5e-06
3b2t_A	311	Structure Of Phosphotransferase Length = 311		5e-06
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-06
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		5e-06
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		5e-06
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-06
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		6e-06
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		6e-06
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		6e-06
4fvp_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain (		7e-06
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		7e-06
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-05
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-05
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		1e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		1e-05
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		1e-05
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-05
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-05
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-05
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		1e-05
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		1e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-05
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		2e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-05
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		3e-05
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		3e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		4e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		4e-05
4fvr_A	289	Crystal Structure Of The Jak2 Pseudokinase Domain M		4e-05
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		4e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		5e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		5e-05
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		5e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		5e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		5e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		5e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		5e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		6e-05
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		6e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		6e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		6e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		6e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		6e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		6e-05
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		6e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		6e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		6e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		6e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		6e-05
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		7e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		7e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		7e-05
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		9e-05
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		9e-05
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		1e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		1e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-04
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		2e-04
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		2e-04
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		2e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-04
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		2e-04
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		2e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		2e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		2e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		2e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		2e-04
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		2e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-04
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		2e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		2e-04
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		2e-04
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		2e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		2e-04
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		2e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		2e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		2e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		2e-04
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		2e-04
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		2e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-04
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-04
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		3e-04
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		3e-04
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-04
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		3e-04
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		3e-04
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		3e-04
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		3e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		3e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		3e-04
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		3e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		3e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		3e-04
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		3e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		3e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		3e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		3e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		3e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		3e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		3e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		3e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		3e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		3e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		4e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		4e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		4e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		4e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		4e-04
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-04
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		4e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		4e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		4e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-04
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		4e-04
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		4e-04
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		4e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		4e-04
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-04
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		4e-04
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		4e-04
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-04
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		5e-04
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		5e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		5e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		5e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		5e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		6e-04
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		6e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		6e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		6e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		7e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		7e-04
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		7e-04
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		7e-04
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		7e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		7e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		7e-04
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		8e-04
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		8e-04
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		8e-04
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		8e-04
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		8e-04
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		8e-04
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		8e-04
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		8e-04
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		8e-04
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		8e-04
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		8e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		9e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		9e-04
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		9e-04

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 90/157 (57%), Gaps = 30/157 (19%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMW--RLKICIGA 58
           LS  RH HLVSLIG   E  EMIL+Y  M  G L+ HLY +  P +   W  RL+ICIGA
Sbjct: 89  LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGA 148
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---ERQLRLLGSR---------- 105
           ARGLHYLHT     IIHRDVKS NILLDEN+V K +     ++   LG            
Sbjct: 149 ARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTL 205
Query: 106 -------ILPAKLTEKSDVYSFG-----VLCARPAML 130
                   +  +LTEKSDVYSFG     VLCAR A++
Sbjct: 206 GYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIV 242

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 88/157 (56%), Gaps = 30/157 (19%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMW--RLKICIGA 58
           LS  RH HLVSLIG   E  EMIL+Y  M  G L+ HLY +  P +   W  RL+ICIGA
Sbjct: 89  LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGA 148
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------------HSRERQLRLL 102
           ARGLHYLHT     IIHRDVKS NILLDEN+V K                H        L
Sbjct: 149 ARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTL 205
Query: 103 G----SRILPAKLTEKSDVYSFG-----VLCARPAML 130
           G       +  +LTEKSDVYSFG     VLCAR A++
Sbjct: 206 GYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIV 242

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 23/143 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           ++  +H +LV L+G   +  ++ LVY  M  G+L D L   +  PPL W  R KI  GAA
Sbjct: 84  MAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAA 143
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK--------HSRERQLRLLGSRI----- 106
            G+++LH    N  IHRD+KS NILLDE + AK         S +    ++ SRI     
Sbjct: 144 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTA 200
Query: 107 ------LPAKLTEKSDVYSFGVL 123
                 L  ++T KSD+YSFGV+
Sbjct: 201 YMAPEALRGEITPKSDIYSFGVV 223

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 23/143 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           ++  +H +LV L+G   +  ++ LVY  M  G+L D L   +  PPL W  R KI  GAA
Sbjct: 84  MAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAA 143
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS-------RER------QLRLLGS-- 104
            G+++LH    N  IHRD+KS NILLDE + AK S        E+        R++G+  
Sbjct: 144 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTA 200
Query: 105 ----RILPAKLTEKSDVYSFGVL 123
                 L  ++T KSD+YSFGV+
Sbjct: 201 YMAPEALRGEITPKSDIYSFGVV 223

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 23/143 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           ++  +H +LV L+G   +  ++ LVY  M  G+L D L   +  PPL W  R KI  GAA
Sbjct: 78  MAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAA 137
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS-------RER------QLRLLGS-- 104
            G+++LH    N  IHRD+KS NILLDE + AK S        E+        R++G+  
Sbjct: 138 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTA 194
Query: 105 ----RILPAKLTEKSDVYSFGVL 123
                 L  ++T KSD+YSFGV+
Sbjct: 195 YMAPEALRGEITPKSDIYSFGVV 217

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 23/139 (16%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAARGLH 63
           +H +LV L+G   +  ++ LVY     G+L D L   +  PPL W  R KI  GAA G++
Sbjct: 79  QHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGIN 138
Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAK--------HSRERQLRLLGSRI--------- 106
           +LH    N  IHRD+KS NILLDE + AK         S +    +  SRI         
Sbjct: 139 FLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAP 195
Query: 107 --LPAKLTEKSDVYSFGVL 123
             L  ++T KSD+YSFGV+
Sbjct: 196 EALRGEITPKSDIYSFGVV 214

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 21/139 (15%)
Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLH 63
           HR+L+ L G  +   E +LVY  MA G++   L      +PPL W  R +I +G+ARGL 
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 145
Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------ILP- 108
           YLH      IIHRDVK+ NILLDE + A        +L+  +              I P 
Sbjct: 146 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPE 205
Query: 109 ----AKLTEKSDVYSFGVL 123
                K +EK+DV+ +GV+
Sbjct: 206 YLSTGKSSEKTDVFGYGVM 224

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 21/139 (15%)
Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLH 63
           HR+L+ L G  +   E +LVY  MA G++   L      +PPL W  R +I +G+ARGL 
Sbjct: 94  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 153
Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------ILP- 108
           YLH      IIHRDVK+ NILLDE + A        +L+  +              I P 
Sbjct: 154 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPE 213
Query: 109 ----AKLTEKSDVYSFGVL 123
                K +EK+DV+ +GV+
Sbjct: 214 YLSTGKSSEKTDVFGYGVM 232

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 22/143 (15%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLY-NNHKPPLQWMWRLKICIGAA 59
           +  LRH ++V  +G   +   + +V + ++RG+L   L+ +  +  L    RL +    A
Sbjct: 88  MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147
Query: 60  RGLHYLHTGTRNT-IIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLT------ 112
           +G++YLH   RN  I+HRD+KS N+L+D+ +  K       RL  S  L +K        
Sbjct: 148 KGMNYLHN--RNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEW 205
Query: 113 ------------EKSDVYSFGVL 123
                       EKSDVYSFGV+
Sbjct: 206 MAPEVLRDEPSNEKSDVYSFGVI 228

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 19/139 (13%)
Query: 1   LSNLRHRHLVSLIGHHVENKE-MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           ++ LRH +LV L+G  VE K  + +V + MA+G+L D+L +  +  L     LK  +   
Sbjct: 68  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 127
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR----ILPAKLTE-- 113
             + YL     N  +HRD+ + N+L+ E+ VAK S     +   S      LP K T   
Sbjct: 128 EAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 184
Query: 114 ---------KSDVYSFGVL 123
                    KSDV+SFG+L
Sbjct: 185 ALREKKFSTKSDVWSFGIL 203

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 19/139 (13%)
Query: 1   LSNLRHRHLVSLIGHHVENKE-MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           ++ LRH +LV L+G  VE K  + +V + MA+G+L D+L +  +  L     LK  +   
Sbjct: 59  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 118
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR----ILPAKLTE-- 113
             + YL     N  +HRD+ + N+L+ E+ VAK S     +   S      LP K T   
Sbjct: 119 EAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 175
Query: 114 ---------KSDVYSFGVL 123
                    KSDV+SFG+L
Sbjct: 176 ALREAAFSTKSDVWSFGIL 194

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 19/139 (13%)
Query: 1   LSNLRHRHLVSLIGHHVENKE-MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           ++ LRH +LV L+G  VE K  + +V + MA+G+L D+L +  +  L     LK  +   
Sbjct: 53  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 112
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR----ILPAKLTE-- 113
             + YL     N  +HRD+ + N+L+ E+ VAK S     +   S      LP K T   
Sbjct: 113 EAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 169
Query: 114 ---------KSDVYSFGVL 123
                    KSDV+SFG+L
Sbjct: 170 ALREKKFSTKSDVWSFGIL 188

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 19/139 (13%)
Query: 1   LSNLRHRHLVSLIGHHVENKE-MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           ++ LRH +LV L+G  VE K  + +V + MA+G+L D+L +  +  L     LK  +   
Sbjct: 240 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 299
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR----ILPAKLTE-- 113
             + YL     N  +HRD+ + N+L+ E+ VAK S     +   S      LP K T   
Sbjct: 300 EAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 356
Query: 114 ---------KSDVYSFGVL 123
                    KSDV+SFG+L
Sbjct: 357 ALREKKFSTKSDVWSFGIL 375

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 22/143 (15%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLY-NNHKPPLQWMWRLKICIGAA 59
           +  LRH ++V  +G   +   + +V + ++RG+L   L+ +  +  L    RL +    A
Sbjct: 88  MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147
Query: 60  RGLHYLHTGTRNT-IIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLT------ 112
           +G++YLH   RN  I+HR++KS N+L+D+ +  K       RL  S  L +K        
Sbjct: 148 KGMNYLHN--RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEW 205
Query: 113 ------------EKSDVYSFGVL 123
                       EKSDVYSFGV+
Sbjct: 206 MAPEVLRDEPSNEKSDVYSFGVI 228

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
            L H  LV L G  +E   + LV++ M  G L D+L    +        L +C+    G+
Sbjct: 58  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL-RTQRGLFAAETLLGMCLDVCEGM 116
Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK--- 110
            YL      ++IHRD+ + N L+ EN V K S     R +         G++  P K   
Sbjct: 117 AYLEEA---SVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK-FPVKWAS 172
Query: 111 --------LTEKSDVYSFGVL 123
                    + KSDV+SFGVL
Sbjct: 173 PEVFSFSRYSSKSDVWSFGVL 193

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 25/141 (17%)
Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
            L H  LV L G  +E   + LV++ M  G L D+L    +        L +C+    G+
Sbjct: 56  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL-RTQRGLFAAETLLGMCLDVCEGM 114
Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK--- 110
            YL       +IHRD+ + N L+ EN V K S     R +         G++  P K   
Sbjct: 115 AYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK-FPVKWAS 170
Query: 111 --------LTEKSDVYSFGVL 123
                    + KSDV+SFGVL
Sbjct: 171 PEVFSFSRYSSKSDVWSFGVL 191

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 25/141 (17%)
Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
            L H  LV L G  +E   + LV++ M  G L D+L    +        L +C+    G+
Sbjct: 58  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL-RTQRGLFAAETLLGMCLDVCEGM 116
Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK--- 110
            YL       +IHRD+ + N L+ EN V K S     R +         G++  P K   
Sbjct: 117 AYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK-FPVKWAS 172
Query: 111 --------LTEKSDVYSFGVL 123
                    + KSDV+SFGVL
Sbjct: 173 PEVFSFSRYSSKSDVWSFGVL 193

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 25/141 (17%)
Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
            L H  LV L G  +E   + LV++ M  G L D+L    +        L +C+    G+
Sbjct: 78  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL-RTQRGLFAAETLLGMCLDVCEGM 136
Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK--- 110
            YL       +IHRD+ + N L+ EN V K S     R +         G++  P K   
Sbjct: 137 AYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK-FPVKWAS 192
Query: 111 --------LTEKSDVYSFGVL 123
                    + KSDV+SFGVL
Sbjct: 193 PEVFSFSRYSSKSDVWSFGVL 213

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 25/141 (17%)
Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
            L H  LV L G  +E   + LV++ M  G L D+L    +        L +C+    G+
Sbjct: 61  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL-RTQRGLFAAETLLGMCLDVCEGM 119
Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK--- 110
            YL       +IHRD+ + N L+ EN V K S     R +         G++  P K   
Sbjct: 120 AYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK-FPVKWAS 175
Query: 111 --------LTEKSDVYSFGVL 123
                    + KSDV+SFGVL
Sbjct: 176 PEVFSFSRYSSKSDVWSFGVL 196

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYL 65
           H H+++LI  +  +  M LV+D M +G L D+L    K  L       I       + +L
Sbjct: 159 HPHIITLIDSYESSSFMFLVFDLMRKGELFDYL--TEKVALSEKETRSIMRSLLEAVSFL 216
Query: 66  HTGTRNTIIHRDVKSTNILLDEN 88
           H    N I+HRD+K  NILLD+N
Sbjct: 217 HA---NNIVHRDLKPENILLDDN 236

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 67  MKKLRHEKLVQLYAV-VSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 125
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 126 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 182
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 183 APEAALYGRFTIKSDVWSFGIL 204

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 67  MKKLRHEKLVQLYAV-VSEEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 125
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 126 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWT 182
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 183 APEAALYGRFTIKSDVWSFGIL 204

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 56  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 114
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 115 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 171
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 172 APEAALYGRFTIKSDVWSFGIL 193

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 57  MKKLRHEKLVQLYAV-VSEEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 115
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 116 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWT 172
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 173 APEAALYGRFTIKSDVWSFGIL 194

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 25/141 (17%)
Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
            L H  LV L G  +E   + LV + M  G L D+L    +        L +C+    G+
Sbjct: 59  KLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYL-RTQRGLFAAETLLGMCLDVCEGM 117
Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK--- 110
            YL       +IHRD+ + N L+ EN V K S     R +         G++  P K   
Sbjct: 118 AYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK-FPVKWAS 173
Query: 111 --------LTEKSDVYSFGVL 123
                    + KSDV+SFGVL
Sbjct: 174 PEVFSFSRYSSKSDVWSFGVL 194

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 58  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 116
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 117 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 173
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 174 APEAALYGRFTIKSDVWSFGIL 195

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 60  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 118
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 119 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 175
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 176 APEAALYGRFTIKSDVWSFGIL 197

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 67  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 125
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 126 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 182
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 183 APEAALYGRFTIKSDVWSFGIL 204

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 67  MKKLRHEKLVQLYAV-VSEEPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 125
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 126 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 182
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 183 APEAALYGRFTIKSDVWSFGIL 204

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G L D L       L+    + +    A 
Sbjct: 67  MKKLRHEKLVQLYAV-VSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIAS 125
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 126 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 182
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 183 APEAALYGRFTIKSDVWSFGIL 204

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  +RH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 67  MKKIRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 125
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 126 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 182
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 183 APEAALYGRFTIKSDVWSFGIL 204

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 67  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 125
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+ + NIL+ EN V K +     RL+         G++      
Sbjct: 126 GMAYVE---RMNYVHRDLAAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 182
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 183 APEAALYGRFTIKSDVWSFGIL 204

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G L D L       L+    + +    A 
Sbjct: 67  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIAS 125
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 126 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 182
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 183 APEAALYGRFTIKSDVWSFGIL 204

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 316 MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 374
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 375 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 431
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 432 APEAALYGRFTIKSDVWSFGIL 453

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M +G+L D L       L+    + +    A 
Sbjct: 64  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIAS 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 123 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 179
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 180 APEAALYGRFTIKSDVWSFGIL 201

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M +G+L D L       L+    + +    A 
Sbjct: 64  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIAS 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 123 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWT 179
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 180 APEAALYGRFTIKSDVWSFGIL 201

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 233 MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 291
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 292 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 348
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 349 APEAALYGRFTIKSDVWSFGIL 370

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 233 MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 291
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 292 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 348
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 349 APEAALYGRFTIKSDVWSFGIL 370

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 233 MKKLRHEKLVQLYAV-VSEEPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 291
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 292 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 348
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 349 APEAALYGRFTIKSDVWSFGIL 370

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 34/154 (22%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGT----LRDH-----LYNNHKPP--LQWM 49
           L+NL+H H+V   G  VE   +I+V++ M  G     LR H     L     PP  L   
Sbjct: 69  LTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQS 128
Query: 50  WRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE----RQLR 100
             L I    A G+ YL +      +HRD+ + N L+ EN + K      SR+       R
Sbjct: 129 QMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYR 185
Query: 101 LLGSRILPA-----------KLTEKSDVYSFGVL 123
           + G  +LP            K T +SDV+S GV+
Sbjct: 186 VGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVV 219

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 25/143 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           + NL H  LV L G   + + + ++ + MA G L ++L    H+   Q +  L++C    
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQL--LEMCKDVC 130
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---------ERQLRLLGSR----- 105
             + YL +      +HRD+ + N L+++  V K S          + +   +GS+     
Sbjct: 131 EAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFPVRW 187
Query: 106 -----ILPAKLTEKSDVYSFGVL 123
                ++ +K + KSD+++FGVL
Sbjct: 188 SPPEVLMYSKFSSKSDIWAFGVL 210

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 234 MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIAS 292
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+         G++      
Sbjct: 293 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKWT 349
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 350 APEAALYGRFTIKSDVWSFGIL 371

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-LQWMWRLKICIGAA 59
            + L+H ++++L G  ++   + LV +    G L   L     PP +   W ++I    A
Sbjct: 60  FAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQI----A 115
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNIL---------------------LDENW--VAKHSRE 96
           RG++YLH      IIHRD+KS+NIL                     L   W    K S  
Sbjct: 116 RGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAA 175
Query: 97  RQLRLLGSRILPAKLTEK-SDVYSFGVL 123
                +   ++ A +  K SDV+S+GVL
Sbjct: 176 GAYAWMAPEVIRASMFSKGSDVWSYGVL 203

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 99  KHKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKD 151
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 152 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 208
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 209 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 241

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 88  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 147
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 148 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 204
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 205 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 237

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 77  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKD 136
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 137 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 193
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 194 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 226

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 84  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 143
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 144 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 200
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 201 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 233

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKD 151
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 152 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 208
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 209 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 241

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 193 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 249
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 250 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 282

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           + NL H  LV L G   + + + ++ + MA G L ++L    +   Q    L++C     
Sbjct: 53  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL-REMRHRFQTQQLLEMCKDVCE 111
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---------ERQLRLLGSR------ 105
            + YL +      +HRD+ + N L+++  V K S          +     +GS+      
Sbjct: 112 AMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWS 168
Query: 106 ----ILPAKLTEKSDVYSFGVL 123
               ++ +K + KSD+++FGVL
Sbjct: 169 PPEVLMYSKFSSKSDIWAFGVL 190

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 91  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 150
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 151 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 207
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 208 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 240

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 81  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 140
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 141 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 197
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 198 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 230

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 151
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 152 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 208
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 209 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 241

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 86  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 145
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 146 LVSCTYQLARGMEYLAS---QKCIHRDLTARNVLVTENNVMKIADFGLARDINNIDYYKK 202
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 203 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 235

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           + NL H  LV L G   + + + ++ + MA G L ++L    H+   Q +  L++C    
Sbjct: 57  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQL--LEMCKDVC 114
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---------ERQLRLLGSR----- 105
             + YL +      +HRD+ + N L+++  V K S          +     +GS+     
Sbjct: 115 EAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 171
Query: 106 -----ILPAKLTEKSDVYSFGVL 123
                ++ +K + KSD+++FGVL
Sbjct: 172 SPPEVLMYSKFSSKSDIWAFGVL 194

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 204
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 205 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 261
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 262 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 294

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 85  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 144
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K               + +
Sbjct: 145 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 201
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 202 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 234

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           + NL H  LV L G   + + + ++ + MA G L ++L    H+   Q +  L++C    
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQL--LEMCKDVC 130
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---------ERQLRLLGSR----- 105
             + YL +      +HRD+ + N L+++  V K S          +     +GS+     
Sbjct: 131 EAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 187
Query: 106 -----ILPAKLTEKSDVYSFGVL 123
                ++ +K + KSD+++FGVL
Sbjct: 188 SPPEVLMYSKFSSKSDIWAFGVL 210

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           + NL H  LV L G   + + + ++ + MA G L ++L    H+   Q +  L++C    
Sbjct: 64  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQL--LEMCKDVC 121
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---------ERQLRLLGSR----- 105
             + YL +      +HRD+ + N L+++  V K S          +     +GS+     
Sbjct: 122 EAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 178
Query: 106 -----ILPAKLTEKSDVYSFGVL 123
                ++ +K + KSD+++FGVL
Sbjct: 179 SPPEVLMYSKFSSKSDIWAFGVL 201

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           + NL H  LV L G   + + + ++ + MA G L ++L    H+   Q +  L++C    
Sbjct: 58  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQL--LEMCKDVC 115
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---------ERQLRLLGSR----- 105
             + YL +      +HRD+ + N L+++  V K S          +     +GS+     
Sbjct: 116 EAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 172
Query: 106 -----ILPAKLTEKSDVYSFGVL 123
                ++ +K + KSD+++FGVL
Sbjct: 173 SPPEVLMYSKFSSKSDIWAFGVL 195

>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo Form) Length = 289

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S L H+HLV   G  V   E ILV + +  G+L  +L  N K  +  +W+L++    A 
Sbjct: 66  MSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAA 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL 85
            +H+L     NT+IH +V + NILL
Sbjct: 125 AMHFLE---ENTLIHGNVCAKNILL 146

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           + NL H  LV L G   + + + ++ + MA G L ++L    H+   Q +  L++C    
Sbjct: 58  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQL--LEMCKDVC 115
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSR----- 105
             + YL +      +HRD+ + N L+++  V K S     R +         GS+     
Sbjct: 116 EAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSKFPVRW 172
Query: 106 -----ILPAKLTEKSDVYSFGVL 123
                ++ +K + KSD+++FGVL
Sbjct: 173 SPPEVLMYSKFSSKSDIWAFGVL 195

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++    ++G LR++L     P +++ + +            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               +  
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKN 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYD-CMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L  LRH + +   G ++      LV + C+  G+  D L   HK PLQ +    +  GA 
Sbjct: 108 LQKLRHPNTIQYRGCYLREHTAWLVMEYCL--GSASD-LLEVHKKPLQEVEIAAVTHGAL 164
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           +GL YLH+   + +IHRDVK+ NILL E  + K
Sbjct: 165 QGLAYLHS---HNMIHRDVKAGNILLSEPGLVK 194

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 23/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L+H  LV L    V  + + +V + M +G+L D L +     L+    + +    A 
Sbjct: 58  MKKLKHDKLVQLYAV-VSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAA 116
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRI----- 106
           G+ Y+    R   IHRD++S NIL+    + K +     RL+         G++      
Sbjct: 117 GMAYIE---RMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWT 173
Query: 107 -----LPAKLTEKSDVYSFGVL 123
                L  + T KSDV+SFG+L
Sbjct: 174 APEAALYGRFTIKSDVWSFGIL 195

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K                 +
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKK 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V +               + +
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMRIADFGLARDINNIDYYKK 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H++++ L+G   ++  + ++ +  ++G LR++L     P +++ + +            
Sbjct: 99  KHKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++    ++G LR++L     P +++ + +            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVAYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K               + +
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYD-CMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L  LRH + +   G ++      LV + C+  G+  D L   HK PLQ +    +  GA 
Sbjct: 69  LQKLRHPNTIQYRGCYLREHTAWLVMEYCL--GSASD-LLEVHKKPLQEVEIAAVTHGAL 125
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           +GL YLH+   + +IHRDVK+ NILL E  + K
Sbjct: 126 QGLAYLHS---HNMIHRDVKAGNILLSEPGLVK 155

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 39/154 (25%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKD 151
Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLR 100
            +      ARG+ YL +      IHRD+ + N+L+ E+ V K          H  +   +
Sbjct: 152 LVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKK 208
Query: 101 LLGSRILPAK-----------LTEKSDVYSFGVL 123
               R LP K            T +SDV+SFGVL
Sbjct: 209 TTNGR-LPVKWMAPEALFDRIYTHQSDVWSFGVL 241

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 23/137 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIG 57
           +  L+H  LV L  H V  KE I ++ + MA+G+L D L ++   K PL  +      I 
Sbjct: 231 MKTLQHDKLVKL--HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQI- 287
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTE---- 113
            A G+ ++    +   IHRD+++ NIL+  + V K + +  L  +G++  P K T     
Sbjct: 288 -AEGMAFIE---QRNYIHRDLRAANILVSASLVCKIA-DFGLARVGAK-FPIKWTAPEAI 341
Query: 114 -------KSDVYSFGVL 123
                  KSDV+SFG+L
Sbjct: 342 NFGSFTIKSDVWSFGIL 358

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 24/143 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L+H  LV L       + + ++ + MA+G+L D L ++    +     +      A 
Sbjct: 62  MKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAE 121
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK- 110
           G+ Y+    R   IHRD+++ N+L+ E+ + K +     R++         G++  P K 
Sbjct: 122 GMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAK-FPIKW 177
Query: 111 ----------LTEKSDVYSFGVL 123
                      T KSDV+SFG+L
Sbjct: 178 TAPEAINFGCFTIKSDVWSFGIL 200

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 26/145 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +SNL H ++V L G       M++ +  +  G L   L +   P ++W  +L++ +  A 
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPRMVMEF--VPCGDLYHRLLDKAHP-IKWSVKLRLMLDIAL 133
Query: 61  GLHYLHTGTRNTIIHRDVKSTNIL---LDENW-----VAKHSRERQ-----LRLLGSR-- 105
           G+ Y+       I+HRD++S NI    LDEN      VA  S  +Q       LLG+   
Sbjct: 134 GIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQQSVHSVSGLLGNFQW 192
Query: 106 ILPAKL-------TEKSDVYSFGVL 123
           + P  +       TEK+D YSF ++
Sbjct: 193 MAPETIGAEEESYTEKADTYSFAMI 217

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 31/146 (21%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIG 57
           +  L+H  LV L  H V  KE I ++ + MA+G+L D L ++   K PL  +  +     
Sbjct: 64  MKTLQHDKLVKL--HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKL--IDFSAQ 119
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ ++    +   IHRD+++ NIL+  + V K +     R++         G++  P
Sbjct: 120 IAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAK-FP 175
Query: 109 AK-----------LTEKSDVYSFGVL 123
            K            T KSDV+SFG+L
Sbjct: 176 IKWTAPEAINFGSFTIKSDVWSFGIL 201

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 6   HRHLVSLIGHHVE------NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           HR++ +  G  ++      + ++ LV +    G++ D + N     L+  W   IC    
Sbjct: 80  HRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREIL 139
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           RGL +LH   ++ +IHRD+K  N+LL EN
Sbjct: 140 RGLSHLH---QHKVIHRDIKGQNVLLTEN 165

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 24/143 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L+H  LV L     + + + ++ + MA+G+L D L ++    +     +      A 
Sbjct: 61  MKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAE 120
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK- 110
           G+ Y+    R   IHRD+++ N+L+ E+ + K +     R++         G++  P K 
Sbjct: 121 GMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAK-FPIKW 176
Query: 111 ----------LTEKSDVYSFGVL 123
                      T KS+V+SFG+L
Sbjct: 177 TAPEAINFGCFTIKSNVWSFGIL 199

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 61  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 121 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKFPIKWT 177
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 178 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 209

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 38/157 (24%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP--------------PL 46
           L+ L+H+H+V   G   E + +++V++ M  G L   L  +H P              PL
Sbjct: 97  LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFL-RSHGPDAKLLAGGEDVAPGPL 155
Query: 47  QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE----R 97
                L +    A G+ YL        +HRD+ + N L+ +  V K      SR+     
Sbjct: 156 GLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 212
Query: 98  QLRLLGSRILPA-----------KLTEKSDVYSFGVL 123
             R+ G  +LP            K T +SDV+SFGV+
Sbjct: 213 YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVV 249

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 26/145 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +SNL H ++V L G       M++ +  +  G L   L +   P ++W  +L++ +  A 
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPRMVMEF--VPCGDLYHRLLDKAHP-IKWSVKLRLMLDIAL 133
Query: 61  GLHYLHTGTRNTIIHRDVKSTNIL---LDENW-----VAKHSRERQ-----LRLLGSR-- 105
           G+ Y+       I+HRD++S NI    LDEN      VA     +Q       LLG+   
Sbjct: 134 GIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQSVHSVSGLLGNFQW 192
Query: 106 ILPAKL-------TEKSDVYSFGVL 123
           + P  +       TEK+D YSF ++
Sbjct: 193 MAPETIGAEEESYTEKADTYSFAMI 217

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 38/157 (24%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP--------------PL 46
           L+ L+H+H+V   G   E + +++V++ M  G L   L  +H P              PL
Sbjct: 68  LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFL-RSHGPDAKLLAGGEDVAPGPL 126
Query: 47  QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE----R 97
                L +    A G+ YL        +HRD+ + N L+ +  V K      SR+     
Sbjct: 127 GLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 183
Query: 98  QLRLLGSRILPA-----------KLTEKSDVYSFGVL 123
             R+ G  +LP            K T +SDV+SFGV+
Sbjct: 184 YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVV 220

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 38/157 (24%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP--------------PL 46
           L+ L+H+H+V   G   E + +++V++ M  G L   L  +H P              PL
Sbjct: 74  LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFL-RSHGPDAKLLAGGEDVAPGPL 132
Query: 47  QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE----R 97
                L +    A G+ YL        +HRD+ + N L+ +  V K      SR+     
Sbjct: 133 GLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 189
Query: 98  QLRLLGSRILPA-----------KLTEKSDVYSFGVL 123
             R+ G  +LP            K T +SDV+SFGV+
Sbjct: 190 YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVV 226

>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant V617f (Mg- Atp-Bound Form) Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S L H+HLV   G      E ILV + +  G+L  +L  N K  +  +W+L++    A 
Sbjct: 66  MSKLSHKHLVLNYGVCFCGDENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAW 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL 85
            +H+L     NT+IH +V + NILL
Sbjct: 125 AMHFLE---ENTLIHGNVCAKNILL 146

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 37/153 (24%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------------ 52
           +H+++++L+G   ++  + ++ +  ++G LR++L     P ++  + +            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKD 158
Query: 53  --KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------------HSR 95
                   ARG+ YL +      IHRD+ + N+L+ EN V K                 +
Sbjct: 159 LVSCTYQLARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKK 215
Query: 96  ERQLRLLGSRILPAKL-----TEKSDVYSFGVL 123
               RL    + P  L     T +SDV+SFGVL
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 248

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 123 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 211

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 123 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 211

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 26/145 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +SNL H ++V L G       M++ +  +  G L   L +   P ++W  +L++ +  A 
Sbjct: 77  MSNLNHPNIVKLYGLMHNPPRMVMEF--VPCGDLYHRLLDKAHP-IKWSVKLRLMLDIAL 133
Query: 61  GLHYLHTGTRNTIIHRDVKSTNIL---LDEN----------WVAKHSRERQLRLLGSR-- 105
           G+ Y+       I+HRD++S NI    LDEN           +++ S      LLG+   
Sbjct: 134 GIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQW 192
Query: 106 ILPAKL-------TEKSDVYSFGVL 123
           + P  +       TEK+D YSF ++
Sbjct: 193 MAPETIGAEEESYTEKADTYSFAMI 217

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 123 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 211

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 76  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 135
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 136 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 192
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 193 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 224

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 123 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 211

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 61  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 121 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWT 177
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 178 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 209

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 65  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 125 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 181
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 213

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 64  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 123
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 124 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWT 180
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 181 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 212

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 31/163 (19%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L +L H +++ L     + K   LV +    G L + + N HK          I      
Sbjct: 100 LKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHK--FDECDAANIMKQILS 157
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL------------DENWVAKHSRERQLR-------L 101
           G+ YLH   ++ I+HRD+K  NILL            D    +  S++ +LR        
Sbjct: 158 GICYLH---KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYY 214
Query: 102 LGSRILPAKLTEKSDVYSFGV-----LCARPAMLPMAENEQEV 139
           +   +L  K  EK DV+S GV     LC  P      +N+Q++
Sbjct: 215 IAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPF--GGQNDQDI 255

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 61  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 121 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWT 177
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 178 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 209

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 128 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 216

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 65  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 125 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 181
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 213

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 123 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 211

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 127
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 128 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 216

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 128 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 216

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHT 67
           ++V   G  + N ++ +  + M  GT  + L    + P+      K+ +   + L+YL  
Sbjct: 85  YIVQCFGTFITNTDVFIAMELM--GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKE 142
Query: 68  GTRNTIIHRDVKSTNILLDE 87
             ++ +IHRDVK +NILLDE
Sbjct: 143 --KHGVIHRDVKPSNILLDE 160

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 65  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 125 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWT 181
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 213

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 64  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 123
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 124 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWT 180
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 181 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 212

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 128 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 216

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 123 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 211

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 67  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 126
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 127 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 183
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 184 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 215

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H  LV+L     + ++M +V D +  G LR HL  N     + + +L IC     
Sbjct: 69  MQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETV-KLFIC-ELVM 126
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDE---------NWVAKHSRERQLRLLGSR---ILP 108
            L YL       IIHRD+K  NILLDE         N  A   RE Q+  +      + P
Sbjct: 127 ALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAP 183
Query: 109 AKLTEKSDV-YSFGV 122
              + +    YSF V
Sbjct: 184 EMFSSRKGAGYSFAV 198

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHRD+ + N L+ EN + K +     RL+      A           
Sbjct: 128 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWT 184
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 216

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         +V + M  G L D+L   ++  +  +  L +    + 
Sbjct: 82  MKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISS 141
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAKL 111
            + YL    +   IHRD+ + N L+ EN V K +     RL+         G++  P K 
Sbjct: 142 AMEYLE---KKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAK-FPIKW 197
Query: 112 TE-----------KSDVYSFGVLCARPAMLPMA 133
           T            KSDV++FGVL    A   M+
Sbjct: 198 TAPESLAYNTFSIKSDVWAFGVLLWEIATYGMS 230

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S L H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 102 ISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 161
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 162 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 218
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 219 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 249

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S L H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 88  ISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 147
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 148 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 204
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 205 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 235

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 39/158 (24%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP---------PLQWMWR 51
           L+NL+H H+V   G   +   +I+V++ M  G L   L   H P         P Q    
Sbjct: 71  LTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFL-RAHGPDAMILVDGQPRQAKGE 129
Query: 52  LK------ICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE---- 96
           L       I    A G+ YL +      +HRD+ + N L+  N + K      SR+    
Sbjct: 130 LGLSQMLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST 186
Query: 97  RQLRLLGSRILPA-----------KLTEKSDVYSFGVL 123
              R+ G  +LP            K T +SDV+SFGV+
Sbjct: 187 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVI 224

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +   RG +   L    K   Q   R    I   A 
Sbjct: 68  SHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQ---RTATYITELAN 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 125 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLXGTLDYLPPE 181
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 182 MIEGRMHDEKVDLWSLGVLC 201

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 88  ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 147
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL------------DENWVAKHSRERQLRLLG 103
              A G  YL     N  IHRD+ + N LL            D        R    R  G
Sbjct: 148 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMAQDIYRASYYRKGG 204
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 205 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 235

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +   RG +   L    K   Q   R    I   A 
Sbjct: 68  SHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQ---RTATYITELAN 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 125 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 181
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 182 MIEGRMHDEKVDLWSLGVLC 201

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 24/141 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK--PPLQWMWRLKICIGA 58
           LS + H  ++ + G   + +++ ++ D +  G L   L  + +   P+   +  ++C+  
Sbjct: 60  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLA- 118
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN--------WVAKHSRERQLRLLGS--RILP 108
              L YLH+     II+RD+K  NILLD+N          AK+  +    L G+   I P
Sbjct: 119 ---LEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLCGTPDYIAP 172
Query: 109 AKLTEKS-----DVYSFGVLC 124
             ++ K      D +SFG+L 
Sbjct: 173 EVVSTKPYNKSIDWWSFGILI 193

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  ++  + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 63  SHLRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 120 ALSYCHS---KKVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPE 176
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 177 MIEGRMHDEKVDLWSLGVLC 196

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 102 ISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 161
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 162 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 218
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 219 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 249

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 87  ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 146
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 147 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 203
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 204 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 234

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 29/145 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIG 57
           +  L+H  LV L  H V  KE I ++ + MA+G+L D L ++   K PL  +      I 
Sbjct: 237 MKTLQHDKLVKL--HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQI- 293
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAK------- 110
            A G+ ++    +   IHRD+++ NIL+  + V K +     R++      A+       
Sbjct: 294 -AEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPI 349
Query: 111 ------------LTEKSDVYSFGVL 123
                        T KSDV+SFG+L
Sbjct: 350 KWTAPEAINFGSFTIKSDVWSFGIL 374

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 87  ISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 146
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 147 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 203
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 204 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 234

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 104 ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 163
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 164 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 220
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 221 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 251

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 84  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 141
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 142 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAK- 197
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 198 LPVKWMALESLQTQKFTTKSDVWSFGVL 225

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 82  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 139
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 140 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 195
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 196 LPVKWMALESLQTQKFTTKSDVWSFGVL 223

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 85  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 142
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 143 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 198
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 199 LPVKWMALESLQTQKFTTKSDVWSFGVL 226

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 27/145 (18%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 71  MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 129
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRILPA 109
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I P 
Sbjct: 130 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PI 185
Query: 110 -----------KLTEKSDVYSFGVL 123
                      K T  SDV+S+G++
Sbjct: 186 RWTSPEAIAYRKFTSASDVWSYGIV 210

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 103 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 160
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 161 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 216
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 217 LPVKWMALESLQTQKFTTKSDVWSFGVL 244

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 79  ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 138
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 139 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 195
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 196 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 226

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 104 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 161
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 162 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 217
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 218 LPVKWMALESLQTQKFTTKSDVWSFGVL 245

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 77  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 134
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 135 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 190
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 191 LPVKWMALESLQTQKFTTKSDVWSFGVL 218

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 88  ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 147
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 148 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 204
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 205 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 235

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 83  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 140
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 141 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 196
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 197 LPVKWMALESLQTQKFTTKSDVWSFGVL 224

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 102 ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 161
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 162 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 218
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 219 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 249

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 114 ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 173
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 174 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 230
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 231 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 261

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 85  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 142
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 143 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 198
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 199 LPVKWMALESLQTQKFTTKSDVWSFGVL 226

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 94  ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 153
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 154 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 210
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 211 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 241

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 84  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 141
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 142 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 197
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 198 LPVKWMALESLQTQKFTTKSDVWSFGVL 225

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 27/145 (18%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 71  MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 129
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRILPA 109
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I P 
Sbjct: 130 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PI 185
Query: 110 -----------KLTEKSDVYSFGVL 123
                      K T  SDV+S+G++
Sbjct: 186 RWTSPEAIAYRKFTSASDVWSYGIV 210

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 27/145 (18%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 88  MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 146
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRILPA 109
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I P 
Sbjct: 147 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI-PI 202
Query: 110 -----------KLTEKSDVYSFGVL 123
                      K T  SDV+S+G++
Sbjct: 203 RWTSPEAIAYRKFTSASDVWSYGIV 227

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 98  MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 156
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 157 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR 213
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 214 WTSPEAIAYRKFTSASDVWSYGIV 237

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 80  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 137
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 138 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 193
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 194 LPVKWMALESLQTQKFTTKSDVWSFGVL 221

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 63  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 120 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLPPE 176
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 177 MIEGRMHDEKVDLWSLGVLC 196

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 128 ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 187
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 188 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGG 244
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 245 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 275

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-----LQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L      P     L  +  L + 
Sbjct: 105 ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 164
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHS---------RERQLRLLG 103
              A G  YL     N  IHRD+ + N LL       VAK           R    R  G
Sbjct: 165 RDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGG 221
Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
             +LP K            T K+D +SFGVL
Sbjct: 222 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL 252

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L D     H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSL-DSFLRKHDAQFTVIQLVGMLRGIAS 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL   +    +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+S+G++
Sbjct: 216 WTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 44/168 (26%)
Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLH 63
           L H +++  IG   ++K +  + + +  GTLR  +  +      W  R+      A G+ 
Sbjct: 64  LEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRG-IIKSMDSQYPWSQRVSFAKDIASGMA 122
Query: 64  YLHTGTRNTIIHRDVKSTNILLDEN-------------------------WVAKHSRERQ 98
           YLH+     IIHRD+ S N L+ EN                          + K  R+++
Sbjct: 123 YLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKR 179
Query: 99  LRLLGSRILPA-------KLTEKSDVYSFG-VLC-------ARPAMLP 131
             ++G+    A          EK DV+SFG VLC       A P  LP
Sbjct: 180 YTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLP 227

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGA 58
           L+ +  R +VSL        ++ LV   M  G +R H+YN     P  Q    +      
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             GL +LH   +  II+RD+K  N+LLD++
Sbjct: 299 VSGLEHLH---QRNIIYRDLKPENVLLDDD 325

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGA 58
           L+ +  R +VSL        ++ LV   M  G +R H+YN     P  Q    +      
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             GL +LH   +  II+RD+K  N+LLD++
Sbjct: 299 VSGLEHLH---QRNIIYRDLKPENVLLDDD 325

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGA 58
           L+ +  R +VSL        ++ LV   M  G +R H+YN     P  Q    +      
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             GL +LH   +  II+RD+K  N+LLD++
Sbjct: 299 VSGLEHLH---QRNIIYRDLKPENVLLDDD 325

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGA 58
           L+ +  R +VSL        ++ LV   M  G +R H+YN     P  Q    +      
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             GL +LH   +  II+RD+K  N+LLD++
Sbjct: 299 VSGLEHLH---QRNIIYRDLKPENVLLDDD 325

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 60  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 116
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 117 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 173
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 174 MIEGRMHDEKVDLWSLGVLC 193

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 89  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEI- 147
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---HSRERQL------RLLGSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +      R  G  +LP
Sbjct: 148 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 203
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 204 VRWMSPESLKDGVFTTYSDVWSFGVV 229

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 79  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEI- 137
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 138 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 193
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 194 VRWMSPESLKDGVFTTYSDVWSFGVV 219

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 63  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 120 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPE 176
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 177 MIEGRMHDEKVDLWSLGVLC 196

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 63  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 120 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 176
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 177 MIEGRMHDEKVDLWSLGVLC 196

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 66  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 123 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPE 179
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 180 MIEGRMHDEKVDLWSLGVLC 199

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 63  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 120 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTXLCGTLDYLPPE 176
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 177 MIEGRMHDEKVDLWSLGVLC 196

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 65  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 121
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 122 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPE 178
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 179 MIEGRMHDEKVDLWSLGVLC 198

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 89  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 145
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 146 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 202
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 203 MIEGRMHDEKVDLWSLGVLC 222

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 83  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 141
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 142 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 197
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 198 VRWMSPESLKDGVFTTYSDVWSFGVV 223

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 83  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 141
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 142 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 197
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 198 VRWMSPESLKDGVFTTYSDVWSFGVV 223

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 67  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 123
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 124 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 180
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 181 MIEGRMHDEKVDLWSLGVLC 200

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 66  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 123 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 179
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 180 MIEGRMHDEKVDLWSLGVLC 199

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 74  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 132
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 133 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 188
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 189 VRWMSPESLKDGVFTTYSDVWSFGVV 214

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 62  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 118
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 119 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 175
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 176 MIEGRMHDEKVDLWSLGVLC 195

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 63  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 120 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPE 176
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 177 MIEGRMHDEKVDLWSLGVLC 196

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 66  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 123 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 179
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 180 MIEGRMHDEKVDLWSLGVLC 199

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 82  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 140
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 141 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 196
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 197 VRWMSPESLKDGVFTTYSDVWSFGVV 222

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 82  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 140
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 141 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 196
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 197 VRWMSPESLKDGVFTTYSDVWSFGVV 222

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 80  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 138
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 139 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 194
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 195 VRWMSPESLKDGVFTTYSDVWSFGVV 220

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 80  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 136
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 137 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 193
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 194 MIEGRMHDEKVDLWSLGVLC 213

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 68  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 125 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 181
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 182 MIEGRMHDEKVDLWSLGVLC 201

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 63  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 120 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPE 176
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 177 MIEGRMHDEKVDLWSLGVLC 196

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 66  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 123 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPE 179
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 180 MIEGRMHDEKVDLWSLGVLC 199

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 144 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 201
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ +L +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 202 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK- 257
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 258 LPVKWMALESLQTQKFTTKSDVWSFGVL 285

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 64  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 120
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 121 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPE 177
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 178 MIEGRMHDEKVDLWSLGVLC 197

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 76  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 134
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 135 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 190
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 191 VRWMSPESLKDGVFTTYSDVWSFGVV 216

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 35/146 (23%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 89  HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 147
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 148 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 203
Query: 109 AK-----------LTEKSDVYSFGVL 123
            +            T  SDV+SFGV+
Sbjct: 204 VRWMSPESLKDGVFTTYSDVWSFGVV 229

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 309 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 368
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
            + YL    +   IHR++ + N L+ EN + K +     RL+      A           
Sbjct: 369 AMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 425
Query: 110 --------KLTEKSDVYSFGVLCARPAMLPMA 133
                   K + KSDV++FGVL    A   M+
Sbjct: 426 APESLAYNKFSIKSDVWAFGVLLWEIATYGMS 457

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 68  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 125 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPE 181
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 182 MIEGRMHDEKVDLWSLGVLC 201

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 1   LSNLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
           L  ++H +++  IG          ++ L+     +G+L D L  N    + W     I  
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAE 128
Query: 57  GAARGLHYLH-------TGTRNTIIHRDVKSTNILLDENWVA 91
             ARGL YLH        G +  I HRD+KS N+LL  N  A
Sbjct: 129 TMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTA 170

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 35/153 (22%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL-------YNN---HKPPLQWMWRLKICIG 57
           H+V L+G   + +  +++ + M RG L+ +L        NN     P L  M ++   I 
Sbjct: 111 HVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEI- 169
Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILP 108
            A G+ YL+    N  +HRD+ + N ++ E++  K       R +         G  +LP
Sbjct: 170 -ADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 225
Query: 109 AK-----------LTEKSDVYSFGVLCARPAML 130
            +            T  SDV+SFGV+    A L
Sbjct: 226 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL 258

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 63  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 120 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPE 176
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 177 MIEGRMHDEKVDLWSLGVLC 196

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 85  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 142
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ +L +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 143 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK- 198
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 199 LPVKWMALESLQTQKFTTKSDVWSFGVL 226

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 86  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 143
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ +L +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 144 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAK- 199
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 200 LPVKWMALESLQTQKFTTKSDVWSFGVL 227

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 85  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 142
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ +L +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 143 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK- 198
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 199 LPVKWMALESLQTQKFTTKSDVWSFGVL 226

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 83  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 140
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ +L +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 141 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK- 196
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 197 LPVKWMALESLQTQKFTTKSDVWSFGVL 224

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 90  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 147
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ +L +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 148 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK- 203
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 204 LPVKWMALESLQTQKFTTKSDVWSFGVL 231

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G  + ++   ++V   M  G LR+ + N  H P ++ +  +   +  
Sbjct: 86  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL--IGFGLQV 143
Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL------------GSRI 106
           A+G+ +L +      +HRD+ + N +LDE +  K +     R +            G++ 
Sbjct: 144 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK- 199
Query: 107 LPAK-----------LTEKSDVYSFGVL 123
           LP K            T KSDV+SFGVL
Sbjct: 200 LPVKWMALESLQTQKFTTKSDVWSFGVL 227

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 64  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 120
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 121 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSCHAPSSRRTTLSGTLDYLPPE 177
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 178 MIEGRMHDEKVDLWSLGVLC 197

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 34/149 (22%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L   RH +++  +G+  + +  I+   C    +L  HL+ + +   +    + I    AR
Sbjct: 62  LRKTRHVNILLFMGYSTKPQLAIVTQWCEG-SSLYHHLHAS-ETKFEMKKLIDIARQTAR 119
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN----------------WVAKHSRERQLRLLGS 104
           G+ YLH     +IIHRD+KS NI L E+                W   H  E   +L GS
Sbjct: 120 GMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFE---QLSGS 173
Query: 105 RILPA----------KLTEKSDVYSFGVL 123
            +  A            + +SDVY+FG++
Sbjct: 174 ILWMAPEVIRMQDSNPYSFQSDVYAFGIV 202

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 34/149 (22%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L   RH +++  +G+  + +  I+   C    +L  HL+ + +   +    + I    AR
Sbjct: 74  LRKTRHVNILLFMGYSTKPQLAIVTQWCEG-SSLYHHLHAS-ETKFEMKKLIDIARQTAR 131
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN----------------WVAKHSRERQLRLLGS 104
           G+ YLH     +IIHRD+KS NI L E+                W   H  E   +L GS
Sbjct: 132 GMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFE---QLSGS 185
Query: 105 RILPA----------KLTEKSDVYSFGVL 123
            +  A            + +SDVY+FG++
Sbjct: 186 ILWMAPEVIRMQDSNPYSFQSDVYAFGIV 214

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   + K M+++ + M  G L D            +  + +  G A 
Sbjct: 100 MGQFSHHNIIRLEGVISKYKPMMIITEYMENGAL-DKFLREKDGEFSVLQLVGMLRGIAA 158
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------GSRI--- 106
           G+ YL        +HRD+ + NIL++ N V K S     R+L           G +I   
Sbjct: 159 GMKYL---ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIR 215
Query: 107 --LPA-----KLTEKSDVYSFGVL 123
              P      K T  SDV+SFG++
Sbjct: 216 WTAPEAISYRKFTSASDVWSFGIV 239

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 64  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 120
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 121 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYLPPE 177
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 178 MIEGRMHDEKVDLWSLGVLC 197

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 24/138 (17%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
           ++ ++V+ +  ++   E+ +V + +A G+L D +        Q     + C+ A   L +
Sbjct: 76  KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQA---LEF 132
Query: 65  LHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR--LLGSR--ILPAKL 111
           LH+   N +IHRD+KS NILL         D  + A+ + E+  R  ++G+   + P  +
Sbjct: 133 LHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVV 189
Query: 112 TEKS-----DVYSFGVLC 124
           T K+     D++S G++ 
Sbjct: 190 TRKAYGPKVDIWSLGIMA 207

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 24/138 (17%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
           ++ ++V+ +  ++   E+ +V + +A G+L D +        Q     + C+ A   L +
Sbjct: 75  KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQA---LEF 131
Query: 65  LHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR--LLGSR--ILPAKL 111
           LH+   N +IHRD+KS NILL         D  + A+ + E+  R  ++G+   + P  +
Sbjct: 132 LHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVV 188
Query: 112 TEKS-----DVYSFGVLC 124
           T K+     D++S G++ 
Sbjct: 189 TRKAYGPKVDIWSLGIMA 206

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 24/138 (17%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
           ++ ++V+ +  ++   E+ +V + +A G+L D +        Q     + C+ A   L +
Sbjct: 75  KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQA---LEF 131
Query: 65  LHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR--LLGSR--ILPAKL 111
           LH+   N +IHRD+KS NILL         D  + A+ + E+  R  ++G+   + P  +
Sbjct: 132 LHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVV 188
Query: 112 TEKS-----DVYSFGVLC 124
           T K+     D++S G++ 
Sbjct: 189 TRKAYGPKVDIWSLGIMA 206

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    +   Q   R    I   A 
Sbjct: 67  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQ---RTATYITELAN 123
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN---------WVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL  N         W       R+  L G+   LP +
Sbjct: 124 ALSYCHS---KRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 180
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 181 MIEGRMHDEKVDLWSLGVLC 200

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHLY--------NNHKPPLQWMWRLKICIGAA 59
           H+V L+G   + +  ++V + MA G L+ +L         N  +PP      +++    A
Sbjct: 80  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 139
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK 110
            G+ YL+       +HRD+ + N ++  ++  K       R +         G  +LP +
Sbjct: 140 DGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 196
Query: 111 -----------LTEKSDVYSFGVL 123
                       T  SD++SFGV+
Sbjct: 197 WMAPESLKDGVFTTSSDMWSFGVV 220

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 89  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 145
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 146 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPE 202
Query: 111 L------TEKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 203 MIEGRMHDEKVDLWSLGVLC 222

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 24/138 (17%)
Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
           ++ ++V+ +  ++   E+ +V + +A G+L D +        Q     + C+ A   L +
Sbjct: 75  KNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQA---LEF 131
Query: 65  LHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLR--LLGSR--ILPAKL 111
           LH+   N +IHRD+KS NILL         D  + A+ + E+  R  ++G+   + P  +
Sbjct: 132 LHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV 188
Query: 112 TEKS-----DVYSFGVLC 124
           T K+     D++S G++ 
Sbjct: 189 TRKAYGPKVDIWSLGIMA 206

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 66  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 122
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 123 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPE 179
Query: 111 LT------EKSDVYSFGVLC 124
           +       EK D++S GVLC
Sbjct: 180 MIEGRMHDEKVDLWSLGVLC 199

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 34/149 (22%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L   RH +++  +G+    +  I+   C    +L  HL+ + +   +    + I    AR
Sbjct: 74  LRKTRHVNILLFMGYSTAPQLAIVTQWCEG-SSLYHHLHAS-ETKFEMKKLIDIARQTAR 131
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN----------------WVAKHSRERQLRLLGS 104
           G+ YLH     +IIHRD+KS NI L E+                W   H  E   +L GS
Sbjct: 132 GMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFE---QLSGS 185
Query: 105 RILPA----------KLTEKSDVYSFGVL 123
            +  A            + +SDVY+FG++
Sbjct: 186 ILWMAPEVIRMQDSNPYSFQSDVYAFGIV 214

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 4   LRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG 57
           LRH +++  I    +NK      ++ LV D    G+L D+L N +   ++ M  +K+ + 
Sbjct: 55  LRHENILGFIA--ADNKDNGTWTQLWLVSDYHEHGSLFDYL-NRYTVTVEGM--IKLALS 109
Query: 58  AARGLHYLH-----TGTRNTIIHRDVKSTNILLDEN 88
            A GL +LH     T  +  I HRD+KS NIL+ +N
Sbjct: 110 TASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN 145

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 4   LRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG 57
           LRH +++  I    +NK      ++ LV D    G+L D+L N +   ++ M  +K+ + 
Sbjct: 93  LRHENILGFIA--ADNKDNGTWTQLWLVSDYHEHGSLFDYL-NRYTVTVEGM--IKLALS 147
Query: 58  AARGLHYLH-----TGTRNTIIHRDVKSTNILLDEN 88
            A GL +LH     T  +  I HRD+KS NIL+ +N
Sbjct: 148 TASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN 183

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 4   LRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG 57
           LRH +++  I    +NK      ++ LV D    G+L D+L N +   ++ M  +K+ + 
Sbjct: 54  LRHENILGFIA--ADNKDNGTWTQLWLVSDYHEHGSLFDYL-NRYTVTVEGM--IKLALS 108
Query: 58  AARGLHYLH-----TGTRNTIIHRDVKSTNILLDEN 88
            A GL +LH     T  +  I HRD+KS NIL+ +N
Sbjct: 109 TASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN 144

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 4   LRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG 57
           LRH +++  I    +NK      ++ LV D    G+L D+L N +   ++ M  +K+ + 
Sbjct: 60  LRHENILGFIA--ADNKDNGTWTQLWLVSDYHEHGSLFDYL-NRYTVTVEGM--IKLALS 114
Query: 58  AARGLHYLH-----TGTRNTIIHRDVKSTNILLDEN 88
            A GL +LH     T  +  I HRD+KS NIL+ +N
Sbjct: 115 TASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN 150

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 4   LRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG 57
           LRH +++  I    +NK      ++ LV D    G+L D+L N +   ++ M  +K+ + 
Sbjct: 57  LRHENILGFIA--ADNKDNGTWTQLWLVSDYHEHGSLFDYL-NRYTVTVEGM--IKLALS 111
Query: 58  AARGLHYLH-----TGTRNTIIHRDVKSTNILLDEN 88
            A GL +LH     T  +  I HRD+KS NIL+ +N
Sbjct: 112 TASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN 147

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 16/96 (16%)
Query: 4   LRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG 57
           LRH +++  I    +NK      ++ LV D    G+L D+L N +   ++ M  +K+ + 
Sbjct: 80  LRHENILGFIA--ADNKDNGTWTQLWLVSDYHEHGSLFDYL-NRYTVTVEGM--IKLALS 134
Query: 58  AARGLHYLH-----TGTRNTIIHRDVKSTNILLDEN 88
            A GL +LH     T  +  I HRD+KS NIL+ +N
Sbjct: 135 TASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN 170

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL--------YNNHKPPLQWMWRLKICIGAA 59
           H+V L+G   + +  ++V + MA G L+ +L         N  +PP      +++    A
Sbjct: 78  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 137
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK 110
            G+ YL+       +HRD+ + N ++  ++  K       R +         G  +LP +
Sbjct: 138 DGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 194
Query: 111 -----------LTEKSDVYSFGVL 123
                       T  SD++SFGV+
Sbjct: 195 WMAPESLKDGVFTTSSDMWSFGVV 218

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL--------YNNHKPPLQWMWRLKICIGAA 59
           H+V L+G   + +  ++V + MA G L+ +L         N  +PP      +++    A
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK 110
            G+ YL+       +HRD+ + N ++  ++  K       R +         G  +LP +
Sbjct: 141 DGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 197
Query: 111 -----------LTEKSDVYSFGVL 123
                       T  SD++SFGV+
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHLY--------NNHKPPLQWMWRLKICIGAA 59
           H+V L+G   + +  ++V + MA G L+ +L         N  +PP      +++    A
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK 110
            G+ YL+       +HRD+ + N ++  ++  K       R +         G  +LP +
Sbjct: 141 DGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 197
Query: 111 -----------LTEKSDVYSFGVL 123
                       T  SD++SFGV+
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 25/143 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H  LV   G   +   + +V + ++ G L ++L  +H   L+    L++C     
Sbjct: 57  MMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYL-RSHGKGLEPSQLLEMCYDVCE 115
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSR---------ERQLRLLGSRILPAK- 110
           G+ +L +   +  IHRD+ + N L+D +   K S          ++ +  +G++  P K 
Sbjct: 116 GMAFLES---HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTK-FPVKW 171
Query: 111 ----------LTEKSDVYSFGVL 123
                      + KSDV++FG+L
Sbjct: 172 SAPEVFHYFKYSSKSDVWAFGIL 194

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHLY--------NNHKPPLQWMWRLKICIGAA 59
           H+V L+G   + +  ++V + MA G L+ +L         N  +PP      +++    A
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK 110
            G+ YL+       +HRD+ + N ++  ++  K       R +         G  +LP +
Sbjct: 141 DGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 197
Query: 111 -----------LTEKSDVYSFGVL 123
                       T  SD++SFGV+
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 8   HLVSLIGHHVENKEMILVYDCMARGTLRDHL--------YNNHKPPLQWMWRLKICIGAA 59
           H+V L+G   + +  ++V + MA G L+ +L         N  +PP      +++    A
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL---------GSRILPAK 110
            G+ YL+       +HRD+ + N ++  ++  K       R +         G  +LP +
Sbjct: 141 DGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYYRKGGKGLLPVR 197
Query: 111 -----------LTEKSDVYSFGVL 123
                       T  SD++SFGV+
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 2   SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-AR 60
           S+LRH +++ L G+  +   + L+ +    GT+   L    K   Q   R    I   A 
Sbjct: 68  SHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ---RTATYITELAN 124
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---------DENWVAKHSRERQLRLLGS-RILPAK 110
            L Y H+     +IHRD+K  N+LL         D  W       R+  L G+   LP +
Sbjct: 125 ALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 181
Query: 111 LT------EKSDVYSFGVLC 124
                   EK D++S GVLC
Sbjct: 182 XIEGRXHDEKVDLWSLGVLC 201

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 21/122 (17%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP-----PLQWMWRLKIC 55
           +S LRH  LV+L     ++ EM+++Y+ M+ G L + + + H        +++M   ++C
Sbjct: 208 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYM--RQVC 265
Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKS 115
               +GL ++H    N  +H D+K  NI+    +  K S E +L   G   L A L  K 
Sbjct: 266 ----KGLCHMH---ENNYVHLDLKPENIM----FTTKRSNELKLIDFG---LTAHLDPKQ 311
Query: 116 DV 117
            V
Sbjct: 312 SV 313

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L H +++ L     + +   LV +C   G L D +   H+     +    I      
Sbjct: 90  LKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEII--HRMKFNEVDAAVIIKQVLS 147
Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDE--------------NWVAKHSRERQLRL----- 101
           G+ YLH   ++ I+HRD+K  N+LL+               + V ++ ++ + RL     
Sbjct: 148 GVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYY 204
Query: 102 LGSRILPAKLTEKSDVYSFGVL 123
           +   +L  K  EK DV+S GV+
Sbjct: 205 IAPEVLRKKYDEKCDVWSIGVI 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-61
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	6e-46
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-42
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	7e-32
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-31
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-29
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	9e-29
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-28
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-27
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	8e-27
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-26
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-26
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-26
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-25
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-25
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	7e-25
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-24
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-24
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-18
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	6e-17
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-16
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-15
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-15
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-15
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-15
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	7e-15
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	9e-15
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-14
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-14
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-14
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-14
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	5e-14
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-13
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-13
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-13
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-13
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-13
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-13
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-13
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-13
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-13
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-13
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	5e-13
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	8e-13
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	9e-13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-12
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-12
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-12
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-12
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	3e-12
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-12
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-12
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	4e-12
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-12
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	5e-12
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	6e-12
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	6e-12
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	7e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	7e-12
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	8e-12
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	8e-12
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	8e-12
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	8e-12
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	9e-12
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	1e-11
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-11
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-11
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-11
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-11
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	3e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-11
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-11
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	4e-11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-11
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	7e-11
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	7e-11
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	8e-11
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	9e-11
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-10
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-10
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-10
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	3e-10
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-10
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-10
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	5e-10
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	6e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	9e-10
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-09
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-09
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	4e-09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	5e-09
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-09
3fme_A	290	Dual specificity mitogen-activated protein kinase;	7e-09
3aln_A	327	Dual specificity mitogen-activated protein kinase;	8e-09
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-08
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-08
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-08
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-08
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	5e-08
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-08
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	9e-08
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-07
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-07
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-07
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-07
3uqc_A	286	Probable conserved transmembrane protein; structur	2e-07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-07
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-07
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-07
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	8e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	8e-07
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	8e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-06
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-06
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	4e-06
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	4e-06
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	7e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	8e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	9e-06
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-05
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-05
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-05
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-05
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-05
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-05
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	3e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	3e-05
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-05
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	3e-05
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	4e-05
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-05
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	5e-05
3rp9_A	458	Mitogen-activated protein kinase; structural genom	6e-05
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	6e-05
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	7e-05
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	7e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	7e-05
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	8e-05
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-04
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-04
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-04
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-04
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-04
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-04
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-04
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-04
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-04
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-04
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	3e-04
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	5e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	6e-04
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	6e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	8e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	9e-04
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	9e-04
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	9e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  190 bits (484), Expect = 2e-61
 Identities = 77/171 (45%), Positives = 88/171 (51%), Gaps = 42/171 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLY--NNHKPPLQWMWRLKICIGA 58
           LS  RH HLVSLIG   E  EMIL+Y  M  G L+ HLY  +     + W  RL+ICIGA
Sbjct: 89  LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGA 148

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG-SRILPA-------- 109
           ARGLHYLHT     IIHRDVKS NILLDEN+V K +        G S+            
Sbjct: 149 ARGLHYLHTR---AIIHRDVKSINILLDENFVPKITD------FGISKKGTELDQTHLST 199

Query: 110 -----------------KLTEKSDVYSFGV-----LCARPAMLPMAENEQE 138
                            +LTEKSDVYSFGV     LCAR A++     E  
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMV 250

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  150 bits (381), Expect = 6e-46
 Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 23/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKICIGAA 59
           ++  +H +LV L+G   +  ++ LVY  M  G+L D L   +  PPL W  R KI  GAA
Sbjct: 84  MAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAA 143

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS--------RERQLRLLGSRI----- 106
            G+++LH    N  IHRD+KS NILLDE + AK S         +    ++ SRI     
Sbjct: 144 NGINFLHE---NHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTA 200

Query: 107 ------LPAKLTEKSDVYSFGVL 123
                 L  ++T KSD+YSFGV+
Sbjct: 201 YMAPEALRGEITPKSDIYSFGVV 223

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  141 bits (359), Expect = 2e-42
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 21/144 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLY--NNHKPPLQWMWRLKICIGA 58
           +S   HR+L+ L G  +   E +LVY  MA G++   L      +PPL W  R +I +G+
Sbjct: 81  ISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGS 140

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS--------RERQL----RLLGSR- 105
           ARGL YLH      IIHRDVK+ NILLDE + A             +       + G+  
Sbjct: 141 ARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIG 200

Query: 106 ------ILPAKLTEKSDVYSFGVL 123
                 +   K +EK+DV+ +GV+
Sbjct: 201 HIAPEYLSTGKSSEKTDVFGYGVM 224

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  113 bits (286), Expect = 7e-32
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 19/140 (13%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP-LQWMWRLKICIGAA 59
           LS + H ++V L G       + LV +    G+L + L+     P       +  C+  +
Sbjct: 55  LSRVNHPNIVKLYG--ACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCS 112

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENW-VAK-----HSRERQLRLLGSR-------- 105
           +G+ YLH+     +IHRD+K  N+LL     V K      + + Q  +  ++        
Sbjct: 113 QGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAP 172

Query: 106 --ILPAKLTEKSDVYSFGVL 123
                +  +EK DV+S+G++
Sbjct: 173 EVFEGSNYSEKCDVFSWGII 192

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  113 bits (284), Expect = 2e-31
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 39/159 (24%)

Query: 1   LSNLRHRHLVSLIG----HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
           L  ++H +++  IG        + ++ L+     +G+L D L       + W     I  
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL---KANVVSWNELCHIAE 128

Query: 57  GAARGLHYLHTGTRNT-------IIHRDVKSTNILLDENWVAK---------HSRERQLR 100
             ARGL YLH             I HRD+KS N+LL  N  A              +   
Sbjct: 129 TMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAG 188

Query: 101 ----------------LLGSRILPAKLTEKSDVYSFGVL 123
                           L G+         + D+Y+ G++
Sbjct: 189 DTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLV 227

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  107 bits (269), Expect = 3e-29
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 20/142 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGAA 59
           +  LRH ++V  +G   +   + +V + ++RG+L   L+ +  +  L    RL +    A
Sbjct: 88  MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLLGSR--------- 105
           +G++YLH      I+HR++KS N+L+D+ +  K      SR +    L S+         
Sbjct: 148 KGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWM 206

Query: 106 ----ILPAKLTEKSDVYSFGVL 123
               +      EKSDVYSFGV+
Sbjct: 207 APEVLRDEPSNEKSDVYSFGVI 228

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  105 bits (263), Expect = 9e-29
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 19/141 (13%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L    H +++ ++G           L+   M  G+L + L+      +     +K  +  
Sbjct: 61  LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDM 120

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLR-LLGS-------- 104
           ARG+ +LHT     I    + S ++++DE+  A+          Q    + +        
Sbjct: 121 ARGMAFLHTLEPL-IPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEA 179

Query: 105 -RILPAKL-TEKSDVYSFGVL 123
            +  P       +D++SF VL
Sbjct: 180 LQKKPEDTNRRSADMWSFAVL 200

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  103 bits (259), Expect = 3e-28
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 27/147 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
            + L+H ++++L G  ++   + LV +    G L   L       +     +   +  AR
Sbjct: 60  FAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVL---SGKRIPPDILVNWAVQIAR 116

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDE--------NWVAK-----HSRERQLRLLGSRIL 107
           G++YLH      IIHRD+KS+NIL+ +        N + K      +RE       S   
Sbjct: 117 GMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAG 176

Query: 108 PAK-----------LTEKSDVYSFGVL 123
                          ++ SDV+S+GVL
Sbjct: 177 AYAWMAPEVIRASMFSKGSDVWSYGVL 203

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  101 bits (254), Expect = 2e-27
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 26/145 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +SNL H ++V L G  + +    +V + +  G L   L +   P ++W  +L++ +  A 
Sbjct: 77  MSNLNHPNIVKLYG--LMHNPPRMVMEFVPCGDLYHRLLDKAHP-IKWSVKLRLMLDIAL 133

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKH----------SRERQLRLLGSR----- 105
           G+ Y+       I+HRD++S NI L                  S++    + G       
Sbjct: 134 GIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQW 192

Query: 106 ----ILPAKL---TEKSDVYSFGVL 123
                + A+    TEK+D YSF ++
Sbjct: 193 MAPETIGAEEESYTEKADTYSFAMI 217

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  100 bits (252), Expect = 8e-27
 Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 44/172 (25%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H +++  IG   ++K +  + + +  GTLR  +  +      W  R+      A 
Sbjct: 61  MRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGII-KSMDSQYPWSQRVSFAKDIAS 119

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-------------HSRERQLRLLGSRIL 107
           G+ YLH      IIHRD+ S N L+ EN                  ++   LR L     
Sbjct: 120 GMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDR 176

Query: 108 PAKL-------------------TEKSDVYSFGVL--------CARPAMLPM 132
             +                     EK DV+SFG++         A P  LP 
Sbjct: 177 KKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPR 228

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  100 bits (250), Expect = 1e-26
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 30/147 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L   RH +++  +G        + +V       +L  HL +  +   +    + I    A
Sbjct: 74  LRKTRHVNILLFMG--YSTAPQLAIVTQWCEGSSLYHHL-HASETKFEMKKLIDIARQTA 130

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLLGSRILPAKLT-- 112
           RG+ YLH     +IIHRD+KS NI L E+   K      + E+       +      +  
Sbjct: 131 RGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSIL 187

Query: 113 ----------------EKSDVYSFGVL 123
                            +SDVY+FG++
Sbjct: 188 WMAPEVIRMQDSNPYSFQSDVYAFGIV 214

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 99.7 bits (249), Expect = 2e-26
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%)

Query: 1   LSNLRHRHLVSLIG----HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
              LRH +++  I         + ++ L+      G+L D+L       L  +  L+I +
Sbjct: 56  TVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYL---QLTTLDTVSCLRIVL 112

Query: 57  GAARGLHYLHTGTRNT-----IIHRDVKSTNILLDENWVAK---------HSRERQLRLL 102
             A GL +LH     T     I HRD+KS NIL+ +N             HS+      +
Sbjct: 113 SIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDV 172

Query: 103 GS-------------------RILPAKLTEKSDVYSFGV 122
           G+                   ++      ++ D+++FG+
Sbjct: 173 GNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGL 211

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 98.7 bits (246), Expect = 8e-26
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 40/159 (25%)

Query: 1   LSNLRHRHLVSLIG----HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
              +RH +++  I           ++ L+ D    G+L D+L       L     LK+  
Sbjct: 85  TVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYL---KSTTLDAKSMLKLAY 141

Query: 57  GAARGLHYLHTGTRNT-----IIHRDVKSTNILLDENWVAK---------HSRERQLRLL 102
            +  GL +LHT   +T     I HRD+KS NIL+ +N                +     +
Sbjct: 142 SSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDI 201

Query: 103 GSR------------ILPAKL-------TEKSDVYSFGV 122
                          +L   L          +D+YSFG+
Sbjct: 202 PPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGL 240

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 96.0 bits (239), Expect = 7e-25
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 40/159 (25%)

Query: 1   LSNLRHRHLVSLIG----HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
              LRH +++  I      +    ++ LV D    G+L D+L   ++  +     +K+ +
Sbjct: 90  TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL---NRYTVTVEGMIKLAL 146

Query: 57  GAARGLHYLHTGTRNT-----IIHRDVKSTNILLDENWVAK---------HSRERQLRLL 102
             A GL +LH     T     I HRD+KS NIL+ +N             H        +
Sbjct: 147 STASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 206

Query: 103 GSR------------ILPAKL-------TEKSDVYSFGV 122
                          +L   +        +++D+Y+ G+
Sbjct: 207 APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGL 245

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 1   LSNLRHRHLVSLIG-----HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKIC 55
           +  + H ++   I            E +LV +    G+L  +L         W+   ++ 
Sbjct: 61  VPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL---SLHTSDWVSSCRLA 117

Query: 56  IGAARGLHYLHT------GTRNTIIHRDVKSTNILLDENWVAK 92
               RGL YLHT        +  I HRD+ S N+L+  +    
Sbjct: 118 HSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCV 160

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 94.0 bits (234), Expect = 4e-24
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 35/154 (22%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
               RH ++V  +G  +    + ++       TL   + +  K  L      +I     +
Sbjct: 83  YRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRD-AKIVLDVNKTRQIAQEIVK 141

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWV-------AKHSRERQ--------------- 98
           G+ YLH      I+H+D+KS N+  D   V          S   Q               
Sbjct: 142 GMGYLHA---KGILHKDLKSKNVFYDNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWL 198

Query: 99  -------LRLLGSRILPAKL--TEKSDVYSFGVL 123
                  +R L       KL  ++ SDV++ G +
Sbjct: 199 CHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTI 232

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 77.7 bits (192), Expect = 6e-18
 Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 24/144 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L    H ++V LIG   + + + +V + +  G     L       L+    L++   AA 
Sbjct: 166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFL-RTEGARLRVKTLLQMVGDAAA 224

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQ----LRLLGSRILPAK- 110
           G+ YL        IHRD+ + N L+ E  V K      SRE          G R +P K 
Sbjct: 225 GMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKW 281

Query: 111 ----------LTEKSDVYSFGVLC 124
                      + +SDV+SFG+L 
Sbjct: 282 TAPEALNYGRYSSESDVWSFGILL 305

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 73.8 bits (182), Expect = 6e-17
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 21/140 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           ++ LRH +LV L+G  VE K  + +V + MA+G+L D+L +  +  L     LK  +   
Sbjct: 68  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 127

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLLGSRILPAK---- 110
             + YL     N  +HRD+ + N+L+ E+ VAK      ++E        ++ P K    
Sbjct: 128 EAMEYL---EGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL-PVKWTAP 183

Query: 111 -------LTEKSDVYSFGVL 123
                   + KSDV+SFG+L
Sbjct: 184 EALREKKFSTKSDVWSFGIL 203

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 21/140 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           ++ LRH +LV L+G  VE K  + +V + MA+G+L D+L +  +  L     LK  +   
Sbjct: 240 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 299

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLLGSRILPAK---- 110
             + YL     N  +HRD+ + N+L+ E+ VAK      ++E        ++ P K    
Sbjct: 300 EAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL-PVKWTAP 355

Query: 111 -------LTEKSDVYSFGVL 123
                   + KSDV+SFG+L
Sbjct: 356 EALREKKFSTKSDVWSFGIL 375

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 71.0 bits (174), Expect = 1e-15
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 22/142 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 270 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 329

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK--------HSRERQLRLLGSRILPAK-- 110
            + YL    +   IHR++ + N L+ EN + K                       P K  
Sbjct: 330 AMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 386

Query: 111 ---------LTEKSDVYSFGVL 123
                     + KSDV++FGVL
Sbjct: 387 APESLAYNKFSIKSDVWAFGVL 408

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 27/147 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S L H+HLV   G  V   E ILV + +  G+L  +L   +K  +  +W+L++    A 
Sbjct: 66  MSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYL-KKNKNCINILWKLEVAKQLAA 124

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--LG-SRIL--------PA 109
            +H+L     NT+IH +V + NILL      K      ++L   G S  +          
Sbjct: 125 AMHFL---EENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERI 181

Query: 110 K------------LTEKSDVYSFGVLC 124
                        L   +D +SFG   
Sbjct: 182 PWVPPECIENPKNLNLATDKWSFGTTL 208

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L     E    I V + M++G+L D L       L+    + +    A 
Sbjct: 316 MKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 374

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK--------HSRERQLRLLGSRILPAK-- 110
           G+ Y+    R   +HRD+++ NIL+ EN V K           + +         P K  
Sbjct: 375 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 431

Query: 111 ---------LTEKSDVYSFGVL 123
                     T KSDV+SFG+L
Sbjct: 432 APEAALYGRFTIKSDVWSFGIL 453

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 69.8 bits (171), Expect = 4e-15
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L     E    I V + M++G+L D L       L+    + +    A 
Sbjct: 233 MKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 291

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK--------HSRERQLRLLGSRILPAK-- 110
           G+ Y+    R   +HRD+++ NIL+ EN V K           + +         P K  
Sbjct: 292 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 348

Query: 111 ---------LTEKSDVYSFGVL 123
                     T KSDV+SFG+L
Sbjct: 349 APEAALYGRFTIKSDVWSFGIL 370

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 68.5 bits (168), Expect = 7e-15
 Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 28/156 (17%)

Query: 1   LSNLRHRHLVSLIGHHV----ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
           L  L+H ++V             K ++LV + M  GTL+       K     + R   C 
Sbjct: 79  LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKT-YLKRFKVMKIKVLR-SWCR 136

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDEN---------WVAKHSRERQLR-LLGS-- 104
              +GL +LHT     IIHRD+K  NI +             +A   R    + ++G+  
Sbjct: 137 QILKGLQFLHT-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPE 195

Query: 105 ----RILPAKLTEKSDVYSFGVLCARPAMLPMAENE 136
                +   K  E  DVY+FG+      ML MA +E
Sbjct: 196 FMAPEMYEEKYDESVDVYAFGMC-----MLEMATSE 226

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 67.6 bits (166), Expect = 9e-15
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H  LV L G  +E   + LV + M  G L D+L    +        L +C+    
Sbjct: 57  MMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYL-RTQRGLFAAETLLGMCLDVCE 115

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQ----LRLLGSR------ 105
           G+ YL       +IHRD+ + N L+ EN V K      +R           G++      
Sbjct: 116 GMAYL---EEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA 172

Query: 106 ----ILPAKLTEKSDVYSFGVL 123
                  ++ + KSDV+SFGVL
Sbjct: 173 SPEVFSFSRYSSKSDVWSFGVL 194

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 25/143 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L+H  LV L     +    I + + MA+G+L D L ++          +      A 
Sbjct: 237 MKTLQHDKLVKLHAVVTKEPIYI-ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAE 295

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQ----LRLLGSRILPAK- 110
           G+ ++    +   IHRD+++ NIL+  + V K      +R  +        G++  P K 
Sbjct: 296 GMAFI---EQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKF-PIKW 351

Query: 111 ----------LTEKSDVYSFGVL 123
                      T KSDV+SFG+L
Sbjct: 352 TAPEAINFGSFTIKSDVWSFGIL 374

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 25/144 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H  LV   G   +   + +V + ++ G L ++L  +H   L+    L++C     
Sbjct: 57  MMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYL-RSHGKGLEPSQLLEMCYDVCE 115

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQ----LRLLGSRILPAK- 110
           G+ +L     +  IHRD+ + N L+D +   K      +R       +  +G++  P K 
Sbjct: 116 GMAFL---ESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKF-PVKW 171

Query: 111 ----------LTEKSDVYSFGVLC 124
                      + KSDV++FG+L 
Sbjct: 172 SAPEVFHYFKYSSKSDVWAFGILM 195

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           + NL H  LV L G   + + + ++ + MA G L ++L    +   Q    L++C     
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYL-REMRHRFQTQQLLEMCKDVCE 131

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQ----LRLLGSR------ 105
            + YL        +HRD+ + N L+++  V K      SR          +GS+      
Sbjct: 132 AMEYL---ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWS 188

Query: 106 ----ILPAKLTEKSDVYSFGVL 123
               ++ +K + KSD+++FGVL
Sbjct: 189 PPEVLMYSKFSSKSDIWAFGVL 210

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 25/143 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L+H+ LV L     +    I + + M  G+L D L       L     L +    A 
Sbjct: 62  MKQLQHQRLVRLYAVVTQEPIYI-ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 120

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQ----LRLLGSRILPAK- 110
           G+ ++        IHRD+++ NIL+ +    K      +R  +        G++  P K 
Sbjct: 121 GMAFI---EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF-PIKW 176

Query: 111 ----------LTEKSDVYSFGVL 123
                      T KSDV+SFG+L
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGIL 199

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 66.2 bits (162), Expect = 5e-14
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 27/145 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   + K M+++ + M  G L   L          +  + +  G A 
Sbjct: 100 MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFL-REKDGEFSVLQLVGMLRGIAA 158

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSR------ERQLRLLGSRILPA 109
           G+ YL        +HRD+ + NIL++ N V K      SR      E      G +I P 
Sbjct: 159 GMKYL---ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKI-PI 214

Query: 110 K-----------LTEKSDVYSFGVL 123
           +            T  SDV+SFG++
Sbjct: 215 RWTAPEAISYRKFTSASDVWSFGIV 239

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 29/148 (19%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           +  L H ++++LIG     E    +L+   M  G L   +  + +        +   +  
Sbjct: 76  MRGLNHPNVLALIGIMLPPEGLPHVLL-PYMCHGDLLQFI-RSPQRNPTVKDLISFGLQV 133

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRE-RQLRLLGSRIL 107
           ARG+ YL        +HRD+ + N +LDE++  K            RE   ++      L
Sbjct: 134 ARGMEYL---AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARL 190

Query: 108 PAK-----------LTEKSDVYSFGVLC 124
           P K            T KSDV+SFGVL 
Sbjct: 191 PVKWTALESLQTYRFTTKSDVWSFGVLL 218

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 27/145 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++K +++V + M  G+L   L   H      +  + +  G A 
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL-RKHDAQFTVIQLVGMLRGIAS 158

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSR------ERQLRLLGSRILPA 109
           G+ YL   +    +HRD+ + NIL++ N V K       R      E      G +I P 
Sbjct: 159 GMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKI-PI 214

Query: 110 K-----------LTEKSDVYSFGVL 123
           +            T  SDV+S+G++
Sbjct: 215 RWTSPEAIAYRKFTSASDVWSYGIV 239

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 31/149 (20%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G     E   ++++   M  G LR+ +  N          +   +  
Sbjct: 80  MKDFSHPNVLSLLGICLRSEGSPLVVL-PYMKHGDLRNFI-RNETHNPTVKDLIGFGLQV 137

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE-------RQLRLLGSRI 106
           A+G+ YL +      +HRD+ + N +LDE +  K      +R+             G++ 
Sbjct: 138 AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK- 193

Query: 107 LPAK-----------LTEKSDVYSFGVLC 124
           LP K            T KSDV+SFGVL 
Sbjct: 194 LPVKWMALESLQTQKFTTKSDVWSFGVLL 222

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +      H+V   G + +N ++ +V +    G++ D +       L       I     +
Sbjct: 78  MQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IIRLRNKTLTEDEIATILQSTLK 136

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           GL YLH       IHRD+K+ NILL+    AK
Sbjct: 137 GLEYLHF---MRKIHRDIKAGNILLNTEGHAK 165

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 25/144 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G     +  ++V + M  G+L   L   H      M  + +  G   
Sbjct: 104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFL-RTHDGQFTIMQLVGMLRGVGA 162

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLLGSRI-----LPAK 110
           G+ YL   +    +HRD+ + N+L+D N V K      SR  +     +       +P +
Sbjct: 163 GMRYL---SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIR 219

Query: 111 -----------LTEKSDVYSFGVL 123
                       +  SDV+SFGV+
Sbjct: 220 WTAPEAIAFRTFSSASDVWSFGVV 243

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
                H ++V      + + E+ +V   MA G+ +D +  +    +  +    I  G  +
Sbjct: 80  SKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLK 139

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            L Y+H       +HR VK+++IL+  +
Sbjct: 140 ALDYIH---HMGYVHRSVKASHILISVD 164

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 25/144 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           ++++ + H+  L+G       + L+   M  G L D++   HK  +   + L  C+  A+
Sbjct: 71  MASVDNPHVCRLLGI-CLTSTVQLITQLMPFGCLLDYV-REHKDNIGSQYLLNWCVQIAK 128

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSR----- 105
           G++YL       ++HRD+ + N+L+      K           + E++    G +     
Sbjct: 129 GMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKW 185

Query: 106 -----ILPAKLTEKSDVYSFGVLC 124
                IL    T +SDV+S+GV  
Sbjct: 186 MALESILHRIYTHQSDVWSYGVTV 209

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 47/154 (30%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ----WMWRLKICI 56
           L+N++H ++V       EN  + +V D    G L   +        Q      W ++IC+
Sbjct: 77  LANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICL 136

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG----SRILPAKL- 111
                L ++H      I+HRD+KS NI L ++   +         LG    +R+L + + 
Sbjct: 137 A----LKHVH---DRKILHRDIKSQNIFLTKDGTVQ---------LGDFGIARVLNSTVE 180

Query: 112 ----------------------TEKSDVYSFGVL 123
                                   KSD+++ G +
Sbjct: 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCV 214

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L+   H ++V L+G +  + ++ ++ +    G +   +       L       +C     
Sbjct: 70  LATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDA-IMLELDRGLTEPQIQVVCRQMLE 128

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            L++LH+     IIHRD+K+ N+L+      +
Sbjct: 129 ALNFLHS---KRIIHRDLKAGNVLMTLEGDIR 157

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 24/144 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSRILPAK- 110
            + YL    +   IHRD+ + N L+ EN + K          + +      G++  P K 
Sbjct: 123 AMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF-PIKW 178

Query: 111 ----------LTEKSDVYSFGVLC 124
                      + KSDV++FGVL 
Sbjct: 179 TAPESLAYNKFSIKSDVWAFGVLL 202

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 33/154 (21%)

Query: 1   LSNLRHRHLVSLIG------HHVENKEMILVYDCMARGTLRDHL----YNNHKPPLQWMW 50
           +    H H+  L+G              +++   M  G L   L       +   L    
Sbjct: 79  MKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQT 138

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL----RL 101
            ++  +  A G+ YL   +    IHRD+ + N +L E+          SR+       R 
Sbjct: 139 LVRFMVDIACGMEYL---SSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQ 195

Query: 102 LGSRILPAK-----------LTEKSDVYSFGVLC 124
             +  LP K            T  SDV++FGV  
Sbjct: 196 GCASKLPVKWLALESLADNLYTVHSDVWAFGVTM 229

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 63.3 bits (154), Expect = 8e-13
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 24/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H H+V LIG  +    + ++ +    G LR  L    K  L     +      + 
Sbjct: 445 MRQFDHPHIVKLIGV-ITENPVWIIMELCTLGELRSFL-QVRKFSLDLASLILYAYQLST 502

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS---RERQLR-----LLGSRILPAKL- 111
            L YL        +HRD+ + N+L+  N   K       R +            LP K  
Sbjct: 503 ALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWM 559

Query: 112 ----------TEKSDVYSFGVL 123
                     T  SDV+ FGV 
Sbjct: 560 APESINFRRFTSASDVWMFGVC 581

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 31/152 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--------YNNHKPPLQWMWRL 52
           +      H+V L+G   + +  +++ + M RG L+ +L         N    P      +
Sbjct: 82  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 141

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL----RLLG 103
           ++    A G+ YL+    N  +HRD+ + N ++ E++  K      +R+       R  G
Sbjct: 142 QMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGG 198

Query: 104 SRILPAK-----------LTEKSDVYSFGVLC 124
             +LP +            T  SDV+SFGV+ 
Sbjct: 199 KGLLPVRWMSPESLKDGVFTTYSDVWSFGVVL 230

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 27/146 (18%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L NL H ++V   G         + L+ + +  G+L+++L   +K  +    +LK  +  
Sbjct: 77  LRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL-PKNKNKINLKQQLKYAVQI 135

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILP 108
            +G+ YL +  R   +HRD+ + N+L++     K           + +    +   R  P
Sbjct: 136 CKGMDYLGS--RQ-YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSP 192

Query: 109 -----------AKLTEKSDVYSFGVL 123
                      +K    SDV+SFGV 
Sbjct: 193 VFWYAPECLMQSKFYIASDVWSFGVT 218

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 36/155 (23%)

Query: 1   LSNLRHRHLVSLIG-----HHVENKEMILVYDCMARGTLRDHL------YNNHKPPLQWM 49
           + +  H +++ L+G           + +++   M  G L  +L            PLQ +
Sbjct: 90  MKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTL 149

Query: 50  WRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL----R 100
             LK  +  A G+ YL   +    +HRD+ + N +L ++          S++       R
Sbjct: 150 --LKFMVDIALGMEYL---SNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYR 204

Query: 101 LLGSRILPAK-----------LTEKSDVYSFGVLC 124
                 +P K            T KSDV++FGV  
Sbjct: 205 QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTM 239

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 25/144 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           ++++ + H+  L+G       + L+   M  G L D++   HK  +   + L  C+  A+
Sbjct: 71  MASVDNPHVCRLLGI-CLTSTVQLITQLMPFGCLLDYV-REHKDNIGSQYLLNWCVQIAK 128

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSR----- 105
           G++YL       ++HRD+ + N+L+      K           + E++    G +     
Sbjct: 129 GMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKW 185

Query: 106 -----ILPAKLTEKSDVYSFGVLC 124
                IL    T +SDV+S+GV  
Sbjct: 186 MALESILHRIYTHQSDVWSYGVTV 209

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 29/148 (19%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           + +  H +++SL+G     E   ++++   M  G LR+ +  N          +   +  
Sbjct: 144 MKDFSHPNVLSLLGICLRSEGSPLVVL-PYMKHGDLRNFI-RNETHNPTVKDLIGFGLQV 201

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRE------RQLRLLGSRIL 107
           A+G+ +L +      +HRD+ + N +LDE +  K      +R+        +       L
Sbjct: 202 AKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKL 258

Query: 108 PAK-----------LTEKSDVYSFGVLC 124
           P K            T KSDV+SFGVL 
Sbjct: 259 PVKWMALESLQTQKFTTKSDVWSFGVLL 286

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 26/143 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H H+V LIG   EN   I + +    G LR  L    K  L     +      + 
Sbjct: 70  MRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFL-QVRKYSLDLASLILYAYQLST 127

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS---RERQL------RLLGSRILPAK- 110
            L YL        +HRD+ + N+L+  N   K       R +      +    ++ P K 
Sbjct: 128 ALAYL---ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKL-PIKW 183

Query: 111 ----------LTEKSDVYSFGVL 123
                      T  SDV+ FGV 
Sbjct: 184 MAPESINFRRFTSASDVWMFGVC 206

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 27/143 (18%)

Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
           +L H H+V L+G       + LV   +  G+L DH+   H+  L     L   +  A+G+
Sbjct: 71  SLDHAHIVRLLGL-CPGSSLQLVTQYLPLGSLLDHVRQ-HRGALGPQLLLNWGVQIAKGM 128

Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILPAK-- 110
           +YL     + ++HR++ + N+LL      +             ++QL    ++  P K  
Sbjct: 129 YYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKT-PIKWM 184

Query: 111 ---------LTEKSDVYSFGVLC 124
                     T +SDV+S+GV  
Sbjct: 185 ALESIHFGKYTHQSDVWSYGVTV 207

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 36/157 (22%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL-------------YNNHKPPLQ 47
           L+ L+H+H+V   G   E + +++V++ M  G L   L              +    PL 
Sbjct: 97  LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLG 156

Query: 48  WMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL--- 99
               L +    A G+ YL        +HRD+ + N L+ +  V K      SR+      
Sbjct: 157 LGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 213

Query: 100 -RLLGSRILP-----------AKLTEKSDVYSFGVLC 124
            R+ G  +LP            K T +SDV+SFGV+ 
Sbjct: 214 YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVL 250

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  LRH + +   G ++      LV +    G+  D L   HK PLQ +    +  GA +
Sbjct: 108 LQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASD-LLEVHKKPLQEVEIAAVTHGALQ 165

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           GL YLH+   + +IHRDVK+ NILL E  + K
Sbjct: 166 GLAYLHS---HNMIHRDVKAGNILLSEPGLVK 194

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 1   LSNLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKI 54
                H +++ L+ + +       E  L+     RGTL + +    +    L     L +
Sbjct: 80  HRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWL 139

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            +G  RGL  +H        HRD+K TNILL +     
Sbjct: 140 LLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPV 174

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 60.9 bits (148), Expect = 5e-12
 Identities = 23/148 (15%), Positives = 59/148 (39%), Gaps = 26/148 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA-- 58
           ++++++ + ++  G      E+ ++Y+ M   ++             +   + I +    
Sbjct: 97  ITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCI 156

Query: 59  ----ARGLHYLHTGTRNTIIHRDVKSTNILLDENW--------VAKHSRERQLR-LLGS- 104
                    Y+H      I HRDVK +NIL+D+N          +++  +++++   G+ 
Sbjct: 157 IKSVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTY 214

Query: 105 -----RILPAKLT---EKSDVYSFGVLC 124
                     + +    K D++S G+  
Sbjct: 215 EFMPPEFFSNESSYNGAKVDIWSLGICL 242

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 26/144 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L + ++V LIG   + + ++LV +    G L   L    +  +      ++    + 
Sbjct: 64  MHQLDNPYIVRLIGV-CQAEALMLVMEMAGGGPLHKFL-VGKREEIPVSNVAELLHQVSM 121

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILPAK 110
           G+ YL        +HRD+ + N+LL     AK           + +       +   P K
Sbjct: 122 GMKYL---EEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLK 178

Query: 111 -----------LTEKSDVYSFGVL 123
                       + +SDV+S+GV 
Sbjct: 179 WYAPECINFRKFSSRSDVWSYGVT 202

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 37/158 (23%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--------------YNNHKPPL 46
           L+NL+H H+V   G   +   +I+V++ M  G L   L                  K  L
Sbjct: 71  LTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGEL 130

Query: 47  QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL-- 99
                L I    A G+ YL        +HRD+ + N L+  N + K      SR+     
Sbjct: 131 GLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTD 187

Query: 100 --RLLGSRILP-----------AKLTEKSDVYSFGVLC 124
             R+ G  +LP            K T +SDV+SFGV+ 
Sbjct: 188 YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVIL 225

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 24/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           + NL H H+V LIG  +E +   ++ +    G L  +L   +K  L+ +  +   +   +
Sbjct: 67  MKNLDHPHIVKLIGI-IEEEPTWIIMELYPYGELGHYL-ERNKNSLKVLTLVLYSLQICK 124

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQ----LRLLGSR------ 105
            + YL        +HRD+   NIL+      K      SR  +     +   +R      
Sbjct: 125 AMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWM 181

Query: 106 ----ILPAKLTEKSDVYSFGVL 123
               I   + T  SDV+ F V 
Sbjct: 182 SPESINFRRFTTASDVWMFAVC 203

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +   ++ ++V+ +  ++   E+ +V + +A G+L D +       +       +C    +
Sbjct: 71  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQ 127

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            L +LH+   N +IHRD+KS NILL  +   K
Sbjct: 128 ALEFLHS---NQVIHRDIKSDNILLGMDGSVK 156

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 34/151 (22%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
            H ++++L+G       + L  +    G L D L  +        +              
Sbjct: 84  HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 143

Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL-RLLGS 104
            L      ARG+ YL   ++   IHRD+ + NIL+ EN+VAK      SR +++      
Sbjct: 144 LLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 200

Query: 105 RILPAK-----------LTEKSDVYSFGVLC 124
             LP +            T  SDV+S+GVL 
Sbjct: 201 GRLPVRWMAIESLNYSVYTTNSDVWSYGVLL 231

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 35/151 (23%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL------------YNNHKPPLQWMWRL 52
           +H ++V+L+G       ++++ +    G L + L            +            L
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS---------RERQLRLLG 103
                 A+G+ +L        IHRDV + N+LL    VAK            +    + G
Sbjct: 168 HFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKG 224

Query: 104 SRILPAK-----------LTEKSDVYSFGVL 123
           +  LP K            T +SDV+S+G+L
Sbjct: 225 NARLPVKWMAPESIFDCVYTVQSDVWSYGIL 255

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 49/156 (31%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQ----WMWRLKI 54
           L  L H +++      +E+ E+ +V +    G L   +  +   K  +     W + +++
Sbjct: 86  LKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQL 145

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG----SRILPAK 110
           C      L ++H      ++HRD+K  N+ +    V K         LG     R   +K
Sbjct: 146 CSA----LEHMH---SRRVMHRDIKPANVFITATGVVK---------LGDLGLGRFFSSK 189

Query: 111 L-----------------------TEKSDVYSFGVL 123
                                     KSD++S G L
Sbjct: 190 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCL 225

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 31/152 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL-----YNNHKPPLQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L       +    L  +  L + 
Sbjct: 87  ISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 146

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLD---ENWVAK-----HSRERQL----RLLG 103
              A G  YL     N  IHRD+ + N LL       VAK      +R+       R  G
Sbjct: 147 RDIACGCQYL---EENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGG 203

Query: 104 SRILP-----------AKLTEKSDVYSFGVLC 124
             +LP              T K+D +SFGVL 
Sbjct: 204 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLL 235

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 60.0 bits (146), Expect = 9e-12
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLK------I 54
           +S   H ++VS     V   E+ LV   ++ G++ D + +           L       I
Sbjct: 67  MSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATI 126

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
                 GL YLH   +N  IHRDVK+ NILL E+
Sbjct: 127 LREVLEGLEYLH---KNGQIHRDVKAGNILLGED 157

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 37/154 (24%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ +              
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158

Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL----RL 101
            +      ARG+ YL        IHRD+ + N+L+ EN V K      +R+       + 
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 215

Query: 102 LGSRILPAK-----------LTEKSDVYSFGVLC 124
             +  LP K            T +SDV+SFGVL 
Sbjct: 216 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 31/152 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL-----YNNHKPPLQWMWRLKIC 55
           +S   H+++V  IG  +++    ++ + MA G L+  L       +    L  +  L + 
Sbjct: 128 ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 187

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLD---ENWVAK-----HSRERQL----RLLG 103
              A G  YL     N  IHRD+ + N LL       VAK      +R+       R  G
Sbjct: 188 RDIACGCQYL---EENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGG 244

Query: 104 SRILP-----------AKLTEKSDVYSFGVLC 124
             +LP              T K+D +SFGVL 
Sbjct: 245 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLL 276

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 37/153 (24%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P L++ +              
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192

Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS---------RERQLRL 101
            +      ARG+ YL        IHRD+ + N+L+ E+ V K +              + 
Sbjct: 193 LVSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 249

Query: 102 LGSRILPAK-----------LTEKSDVYSFGVL 123
             +  LP K            T +SDV+SFGVL
Sbjct: 250 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 282

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 27/144 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L + ++V +IG   E +  +LV +    G L  +L  N     + +  +++    + 
Sbjct: 72  MQQLDNPYIVRMIGI-CEAESWMLVMEMAELGPLNKYLQQNRHVKDKNI--IELVHQVSM 128

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILPAK 110
           G+ YL     N  +HRD+ + N+LL     AK           + E   +       P K
Sbjct: 129 GMKYL--EESN-FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVK 185

Query: 111 -----------LTEKSDVYSFGVL 123
                       + KSDV+SFGVL
Sbjct: 186 WYAPECINYYKFSSKSDVWSFGVL 209

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 37/154 (24%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
           +H+++++L+G   ++  + ++ +  ++G LR++L     P +++ +              
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 204

Query: 52  -LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL----RL 101
            +      ARG+ YL        IHRD+ + N+L+ EN V K      +R+       + 
Sbjct: 205 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKK 261

Query: 102 LGSRILPAK-----------LTEKSDVYSFGVLC 124
             +  LP K            T +SDV+SFGVL 
Sbjct: 262 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 295

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 27/146 (18%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L +L+H ++V   G  +    + + L+ + +  G+LRD+L   HK  +  +  L+     
Sbjct: 65  LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL-QKHKERIDHIKLLQYTSQI 123

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----------HSRERQLRLLGSR-- 105
            +G+ YL T  +   IHRD+ + NIL++     K             +E           
Sbjct: 124 CKGMEYLGT--KR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESP 180

Query: 106 --------ILPAKLTEKSDVYSFGVL 123
                   +  +K +  SDV+SFGV+
Sbjct: 181 IFWYAPESLTESKFSVASDVWSFGVV 206

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS     ++    G ++++ ++ ++ + +  G+  D L      PL       I     +
Sbjct: 74  LSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG---PLDETQIATILREILK 130

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           GL YLH       IHRD+K+ N+LL E+   K
Sbjct: 131 GLDYLH---SEKKIHRDIKAANVLLSEHGEVK 159

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 39/155 (25%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL----------------YNNHKPPLQW 48
            H ++V+L+G        +++ +    G L + L                  + +  L  
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 49  MWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL---- 99
              L      A+G+ +L        IHRD+ + NILL    + K      +R+ +     
Sbjct: 145 EDLLSFSYQVAKGMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY 201

Query: 100 RLLGSRILPAK-----------LTEKSDVYSFGVL 123
            + G+  LP K            T +SDV+S+G+ 
Sbjct: 202 VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 236

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 58.8 bits (142), Expect = 3e-11
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 26/144 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L + ++V LIG   + + ++LV +    G L   L    +  +      ++    + 
Sbjct: 390 MHQLDNPYIVRLIGV-CQAEALMLVMEMAGGGPLHKFL-VGKREEIPVSNVAELLHQVSM 447

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILPAK 110
           G+ YL        +HR++ + N+LL     AK           + +       +   P K
Sbjct: 448 GMKYL---EEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLK 504

Query: 111 -----------LTEKSDVYSFGVL 123
                       + +SDV+S+GV 
Sbjct: 505 WYAPECINFRKFSSRSDVWSYGVT 528

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           + + +H ++V +   ++  +E+ ++ + +  G L D +       L       +C    +
Sbjct: 96  MRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV---RLNEEQIATVCEAVLQ 152

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            L YLH      +IHRD+KS +ILL  +   K
Sbjct: 153 ALAYLHA---QGVIHRDIKSDSILLTLDGRVK 181

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 58.2 bits (141), Expect = 4e-11
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 27/146 (18%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L +L+H ++V   G  +    + + L+ + +  G+LRD+L   HK  +  +  L+     
Sbjct: 96  LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL-QKHKERIDHIKLLQYTSQI 154

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----------HSRERQLRLLGSR-- 105
            +G+ YL T  +   IHRD+ + NIL++     K             +E           
Sbjct: 155 CKGMEYLGT--KR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESP 211

Query: 106 --------ILPAKLTEKSDVYSFGVL 123
                   +  +K +  SDV+SFGV+
Sbjct: 212 IFWYAPESLTESKFSVASDVWSFGVV 237

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 38/155 (24%)

Query: 5   RHRHLVSLIGH-HVENKEMILVYDCMARGTLRDHL--------------YNNHKPPLQWM 49
            H ++V+L+G        ++++ +    G L  +L               + +K  L   
Sbjct: 89  HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLE 148

Query: 50  WRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL----R 100
             +      A+G+ +L        IHRD+ + NILL E  V K      +R+        
Sbjct: 149 HLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 205

Query: 101 LLGSRILPAK-----------LTEKSDVYSFGVLC 124
             G   LP K            T +SDV+SFGVL 
Sbjct: 206 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLL 240

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 26/143 (18%)

Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
           +L HR+L+ L G  +     + V +    G+L D L   H+         +  +  A G+
Sbjct: 77  SLDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRL-RKHQGHFLLGTLSRYAVQVAEGM 134

Query: 63  HYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILPAK-- 110
            YL        IHRD+ + N+LL    + K             +    +   R +P    
Sbjct: 135 GYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWC 191

Query: 111 ---------LTEKSDVYSFGVLC 124
                     +  SD + FGV  
Sbjct: 192 APESLKTRTFSHASDTWMFGVTL 214

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 26/142 (18%), Positives = 40/142 (28%), Gaps = 27/142 (19%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP---PLQWMWRLKICIG 57
               +H   V L     E   + L  +     +L+ H             W +       
Sbjct: 111 EKVGQHPCCVRLEQAWEEGGILYLQTEL-CGPSLQQHCEAWGASLPEAQVWGYLRDTL-- 167

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQLRLLGS-------- 104
               L +LH+     ++H DVK  NI L      K        E      G         
Sbjct: 168 --LALAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRY 222

Query: 105 ---RILPAKLTEKSDVYSFGVL 123
               +L       +DV+S G+ 
Sbjct: 223 MAPELLQGSYGTAADVFSLGLT 244

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 57.4 bits (139), Expect = 7e-11
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 27/146 (18%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L  L    +V   G  +    + + LV + +  G LRD L   H+  L     L      
Sbjct: 78  LKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFL-QRHRARLDASRLLLYSSQI 136

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILP 108
            +G+ YL +  R   +HRD+ + NIL++     K             +    +      P
Sbjct: 137 CKGMEYLGS--RR-CVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSP 193

Query: 109 AK-----------LTEKSDVYSFGVL 123
                         + +SDV+SFGV+
Sbjct: 194 IFWYAPESLSDNIFSRQSDVWSFGVV 219

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 57.2 bits (139), Expect = 8e-11
 Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 37/157 (23%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--------------HKPPL 46
            + L+H ++V L+G   +++ + +++   + G L + L                  K  L
Sbjct: 66  RARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSAL 125

Query: 47  QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRERQL-- 99
           +    + +    A G+ YL   + + ++H+D+ + N+L+ +    K       RE     
Sbjct: 126 EPPDFVHLVAQIAAGMEYL---SSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAAD 182

Query: 100 --RLLGSRILP-----------AKLTEKSDVYSFGVL 123
             +LLG+ +LP            K +  SD++S+GV+
Sbjct: 183 YYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVV 219

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 57.0 bits (138), Expect = 9e-11
 Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 29/146 (19%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L  L H H++   G         + LV + +  G+LRD+L   H   L  +  L      
Sbjct: 87  LRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYL-PRHSIGLAQL--LLFAQQI 143

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILP 108
             G+ YLH   ++  IHRD+ + N+LLD + + K                 R+      P
Sbjct: 144 CEGMAYLHA--QH-YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSP 200

Query: 109 AK-----------LTEKSDVYSFGVL 123
                            SDV+SFGV 
Sbjct: 201 VFWYAPECLKEYKFYYASDVWSFGVT 226

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 45/166 (27%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR--------- 51
           L  + H H++ L G   ++  ++L+ +    G+LR  L  + K    ++           
Sbjct: 80  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSL 139

Query: 52  -------------LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----H 93
                        +      ++G+ YL       ++HRD+ + NIL+ E    K      
Sbjct: 140 DHPDERALTMGDLISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGL 196

Query: 94  SRERQL----RLLGSRILPAK-----------LTEKSDVYSFGVLC 124
           SR+              +P K            T +SDV+SFGVL 
Sbjct: 197 SRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLL 242

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 47/167 (28%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR--------- 51
           ++   + ++V L+G     K M L+++ MA G L + L  +  P                
Sbjct: 104 MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFL-RSMSPHTVCSLSHSDLSTRAR 162

Query: 52  --------------LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----- 92
                         L I    A G+ YL    R   +HRD+ + N L+ EN V K     
Sbjct: 163 VSSPGPPPLSCAEQLCIARQVAAGMAYL--SERK-FVHRDLATRNCLVGENMVVKIADFG 219

Query: 93  HSRERQL----RLLGSRILPAK-----------LTEKSDVYSFGVLC 124
            SR        +  G+  +P +            T +SDV+++GV+ 
Sbjct: 220 LSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVL 266

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 50/160 (31%)

Query: 1   LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHL--YNNHKPPLQ----WMWRL 52
           L  L+H ++V      ++  N  + +V +    G L   +      +  L          
Sbjct: 59  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 118

Query: 53  KICIGAARGLHYLHT--GTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG----SRI 106
           ++ +     L   H      +T++HRD+K  N+ LD     K         LG    +RI
Sbjct: 119 QLTLA----LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVK---------LGDFGLARI 165

Query: 107 LPAKL-----------------------TEKSDVYSFGVL 123
           L                            EKSD++S G L
Sbjct: 166 LNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 205

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 46/161 (28%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWR------------- 51
            H ++V+L+G    +  + L+++    G L ++L  + +                     
Sbjct: 107 SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYL-RSKREKFSEDEIEYENQKRLEEEED 165

Query: 52  ---------LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----HSRER 97
                    L      A+G+ +L      + +HRD+ + N+L+    V K      +R+ 
Sbjct: 166 LNVLTFEDLLCFAYQVAKGMEFL---EFKSCVHRDLAARNVLVTHGKVVKICDFGLARDI 222

Query: 98  QL----RLLGSRILPAK-----------LTEKSDVYSFGVL 123
                  + G+  LP K            T KSDV+S+G+L
Sbjct: 223 MSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGIL 263

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQWMWRLKICIGA 58
               +H H+V       E+  M++  +    G+L D +          +      + +  
Sbjct: 65  AVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQV 124

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS-RERQLRLLGSRILPAKL 111
            RGL Y+H+    +++H D+K +NI +    +   +  E       S  +  K+
Sbjct: 125 GRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKI 175

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEM---------ILVYDCM---ARGTLRDHL-YNNHKPPLQ 47
           L+ L H  +V      +E             + +Y  M    +  L+D +         +
Sbjct: 57  LAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERE 116

Query: 48  WMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
               L I +  A  + +LH      ++HRD+K +NI    + V K
Sbjct: 117 RSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVK 158

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 5   RHRHLVSLIG------HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
            HR++ +  G          + ++ LV +    G++ D + N     L+  W   IC   
Sbjct: 79  HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREI 138

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            RGL +LH   ++ +IHRD+K  N+LL EN
Sbjct: 139 LRGLSHLH---QHKVIHRDIKGQNVLLTEN 165

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 55.0 bits (132), Expect = 6e-10
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWM---WRLKICIG 57
           L        +     H+     +LV +  + GTL + +      P + M     +   + 
Sbjct: 121 LKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMR 180

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRE 96
               +  +H      IIH D+K  N +L   ++ +   +
Sbjct: 181 MLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDED 216

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 27/112 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMA----------------RGTLRDHLYNNHKP 44
           L+ L H ++V   G               +                +GTL   +      
Sbjct: 58  LAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGE 117

Query: 45  PLQ----WMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            L          +I     +G+ Y+H      +I+RD+K +NI L +    K
Sbjct: 118 KLDKVLALELFEQIT----KGVDYIH---SKKLINRDLKPSNIFLVDTKQVK 162

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
            + L    +V L G   E   + +  + +  G+L   +       L     L     A  
Sbjct: 104 CAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLI--KQMGCLPEDRALYYLGQALE 161

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           GL YLH      I+H DVK+ N+LL  +
Sbjct: 162 GLEYLH---TRRILHGDVKADNVLLSSD 186

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 17/105 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMAR-------------GTLRDHLYNNHKPPLQ 47
           L++L H+++V      +E +  +     + +             GTL D + ++     Q
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLI-HSENLNQQ 114

Query: 48  WMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                ++       L Y+H      IIHRD+K  NI +DE+   K
Sbjct: 115 RDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVK 156

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 13/98 (13%)

Query: 5   RHRHLVSLIGHHVENKE---------MILVYDCMARGTLRDHLYN-NHKPPLQWMWRLKI 54
            H ++V         KE         ++L   C  +G L + L     + PL     LKI
Sbjct: 84  GHPNIVQFCSAASIGKEESDTGQAEFLLLTELC--KGQLVEFLKKMESRGPLSCDTVLKI 141

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                R + ++H   +  IIHRD+K  N+LL      K
Sbjct: 142 FYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIK 178

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 52.6 bits (126), Expect = 5e-09
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 24/140 (17%)

Query: 1   LSNLRHRHLVSL--IGHHVENKEMILVYDCM--ARG-TLRDHLYNNHKPPLQWMWRLKIC 55
           L+ + H  +V +     H +     + Y  M    G +L+          L     +   
Sbjct: 133 LAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSK----GQKLPVAEAIAYL 188

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWV------AKHSRERQLRLLGSR---- 105
           +     L YLH      +++ D+K  NI+L E  +      A         L G+     
Sbjct: 189 LEILPALSYLH---SIGLVYNDLKPENIMLTEEQLKLIDLGAVSRINSFGYLYGTPGFQA 245

Query: 106 --ILPAKLTEKSDVYSFGVL 123
             I+    T  +D+Y+ G  
Sbjct: 246 PEIVRTGPTVATDIYTVGRT 265

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 30/143 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP-PLQWMWRLKICIGAA 59
           L      ++V   G    + E+ +  + M  G+L D +       P Q +   K+ I   
Sbjct: 85  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSL-DQVLKKAGRIPEQIL--GKVSIAVI 141

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKH-----SRERQLRLLGS---------- 104
           +GL YL    ++ I+HRDVK +NIL++     K      S +    L+ S          
Sbjct: 142 KGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ----LIDSMANSFVGTRS 195

Query: 105 -----RILPAKLTEKSDVYSFGV 122
                R+     + +SD++S G+
Sbjct: 196 YMSPERLQGTHYSVQSDIWSMGL 218

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           KI +   + L +LH+     +IHRDVK +N+L++  
Sbjct: 113 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINAL 146

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           KI +   + L++L    +  IIHRD+K +NILLD +
Sbjct: 129 KITLATVKALNHLKENLK--IIHRDIKPSNILLDRS 162

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL--KICIGA 58
             +L+H+++V  +G   EN  + +  + +  G+L   L  +   PL+   +         
Sbjct: 73  HKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSA-LLRSKWGPLKDNEQTIGFYTKQI 131

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLD-ENWVAK 92
             GL YLH    N I+HRD+K  N+L++  + V K
Sbjct: 132 LEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLK 163

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           K+ +   + L+YL    ++ +IHRDVK +NILLDE 
Sbjct: 128 KMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDER 161

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 24/110 (21%)

Query: 33  TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           TL +++      PL     +        G+ + H      I+HRD+K  NIL+D N   K
Sbjct: 97  TLSEYI--ESHGPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLK 151

Query: 93  ------------HSRERQLRLLGS-------RILPAKLTEKSDVYSFGVL 123
                        S  +   +LG+       +       E +D+YS G++
Sbjct: 152 IFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIV 201

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 21/140 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
            S+LRH +++ L G+  +   + L+ +    GT+   L    K   +           A 
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFD-EQRTA-TYITELAN 120

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN---------WVAKHSRERQLRLLGS------R 105
            L Y H      +IHRD+K  N+LL            W       R+  L G+       
Sbjct: 121 ALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPE 177

Query: 106 ILPAKL-TEKSDVYSFGVLC 124
           ++  ++  EK D++S GVLC
Sbjct: 178 MIEGRMHDEKVDLWSLGVLC 197

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 26/112 (23%)

Query: 33  TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           TLRD ++     P+     +++   A + L++ H   +N IIHRDVK  NI++      K
Sbjct: 102 TLRDIVHTEG--PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVK 156

Query: 93  ----------HSRERQL----RLLGS-------RILPAKLTEKSDVYSFGVL 123
                           +     ++G+       +     +  +SDVYS G +
Sbjct: 157 VMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ-----WMWRLKIC 55
           L  L+H +LV+L+      + + LV++     T+   L    +   +       W+    
Sbjct: 56  LKQLKHPNLVNLLEVFRRKRRLHLVFEYCDH-TVLHELDRYQRGVPEHLVKSITWQT--- 111

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
               + +++ H   ++  IHRDVK  NIL+ ++ V K
Sbjct: 112 ---LQAVNFCH---KHNCIHRDVKPENILITKHSVIK 142

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 29/144 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ----WMWRLKICI 56
            S+LRH +++ +  +  + K + L+ +   RG L   L  + +   Q    +M  L    
Sbjct: 68  QSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEEL---- 123

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDEN---------WVAKHSRERQLRLLGS--- 104
             A  LHY H      +IHRD+K  N+L+            W       R+  + G+   
Sbjct: 124 --ADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDY 178

Query: 105 ---RILPAKL-TEKSDVYSFGVLC 124
               ++  K   EK D++  GVLC
Sbjct: 179 LPPEMIEGKTHDEKVDLWCAGVLC 202

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKIC-IGAA 59
           +  L H  LV+L     + ++M +V D +  G LR HL  N     + + +L IC +  A
Sbjct: 69  MQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETV-KLFICELVMA 127

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             L YL       IIHRD+K  NILLDE+
Sbjct: 128 --LDYLQ---NQRIIHRDMKPDNILLDEH 151

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 27/103 (26%)

Query: 45  PLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN-WV-------AKHSRE 96
            L    RL++ +   R L  LH      ++H  ++  +I+LD+   V             
Sbjct: 207 SLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA 263

Query: 97  RQL----------------RLLGSRILPAKLTEKSDVYSFGVL 123
             +                 L   +  P  +T   D ++ G+ 
Sbjct: 264 SAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 38/156 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK---PPLQWMWRLKICIG 57
           +     ++ V  +        + +      +  L+D +                + I I 
Sbjct: 115 MDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQI- 173

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRIL 107
            A  + +LH      ++HRD+K +NI    + V K             E +  +L     
Sbjct: 174 -AEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPA 229

Query: 108 PAKLT--------------------EKSDVYSFGVL 123
            A  T                     K D++S G++
Sbjct: 230 YATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLI 265

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 24/110 (21%)

Query: 33  TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN-WV- 90
            L   L      PL     + I       L   H        HRDVK  NIL+  + +  
Sbjct: 120 DLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAY 174

Query: 91  ------AKHSRERQL----RLLGS-------RILPAKLTEKSDVYSFGVL 123
                 A  + + +L      +G+       R   +  T ++D+Y+   +
Sbjct: 175 LVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCV 224

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 43/164 (26%)

Query: 1   LSNLRH--RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L+ L+     ++ L  + + ++ + +V +C     L   L       +    R       
Sbjct: 61  LNKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKS--IDPWERKSYWKNM 117

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDE------------------------------N 88
              +H +H   ++ I+H D+K  N L+ +                              N
Sbjct: 118 LEAVHTIH---QHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVN 174

Query: 89  WVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGV-----LCARP 127
           ++   + +       +    +K++ KSDV+S G         + 
Sbjct: 175 YMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKT 218

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 22/142 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
              L+H  ++ L  +  ++  + LV +    G +  +L N  KP  +   R         
Sbjct: 65  HCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEAR-HFMHQIIT 123

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN---------WVAKHSRERQLR--LLGS----- 104
           G+ YLH    + I+HRD+  +N+LL  N            +     +    L G+     
Sbjct: 124 GMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYIS 180

Query: 105 -RILPAKL-TEKSDVYSFGVLC 124
             I        +SDV+S G + 
Sbjct: 181 PEIATRSAHGLESDVWSLGCMF 202

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 15/97 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL--YNNHKPPLQ---WMWRLKIC 55
           L  LRH +LV+L+    + K   LV++ +   T+ D L  + N         +++++   
Sbjct: 78  LKQLRHENLVNLLEVCKKKKRWYLVFEFVDH-TILDDLELFPNGLDYQVVQKYLFQI--- 133

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                G+ + H    + IIHRD+K  NIL+ ++ V K
Sbjct: 134 ---INGIGFCH---SHNIIHRDIKPENILVSQSGVVK 164

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 11/123 (8%), Positives = 32/123 (26%), Gaps = 16/123 (13%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS +    +  ++         ++V + +  G+L++            +  ++     A 
Sbjct: 85  LSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVA----DTSPSPVGAIRAMQSLAA 140

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSF 120
                H   R  +       + + +  +             L           + D+   
Sbjct: 141 AADAAH---RAGVALSIDHPSRVRVSIDGDVV---------LAYPATMPDANPQDDIRGI 188

Query: 121 GVL 123
           G  
Sbjct: 189 GAS 191

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 1   LSNLRH--RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L+ L+     ++ L  + + ++ + +V +C     L   L       +    R       
Sbjct: 80  LNKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKS--IDPWERKSYWKNM 136

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
              +H +H   ++ I+H D+K  N L+ + 
Sbjct: 137 LEAVHTIH---QHGIVHSDLKPANFLIVDG 163

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 17/98 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------KI 54
             +L H+H+V   G   +N  + +V +   R +L +               L        
Sbjct: 95  HRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRK--------ALTEPEARYY 146

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                 G  YLH   RN +IHRD+K  N+ L+E+   K
Sbjct: 147 LRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVK 181

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 1   LSNLRH--RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L+ L+     ++ L  + + ++ + +V +C     L   L       +    R       
Sbjct: 108 LNKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKS--IDPWERKSYWKNM 164

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
              +H +H   ++ I+H D+K  N L+ + 
Sbjct: 165 LEAVHTIH---QHGIVHSDLKPANFLIVDG 191

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 17/98 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------KI 54
             +L H+H+V   G   +N  + +V +   R +L +               L        
Sbjct: 69  HRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRK--------ALTEPEARYY 120

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                 G  YLH   RN +IHRD+K  N+ L+E+   K
Sbjct: 121 LRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVK 155

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 46.6 bits (110), Expect = 5e-07
 Identities = 11/128 (8%), Positives = 25/128 (19%), Gaps = 25/128 (19%)

Query: 22  MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST 81
           M      +             +     +    +     R    L       ++H      
Sbjct: 167 MPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLVHGHFTPD 223

Query: 82  NILLDEN---------WVAKHSRERQLRLLGSRILP--------AKLTEKSDVYSFGV-- 122
           N+ +  +          + K         +     P        A  T   + +  G+  
Sbjct: 224 NLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSI 283

Query: 123 ---LCARP 127
               C   
Sbjct: 284 YRVWCLFL 291

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 23/109 (21%)

Query: 35  RDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-- 92
            +   + +K  L     +      A+G+ +L        IHRD+ + NILL E  V K  
Sbjct: 179 EEAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKIC 235

Query: 93  -------HSRERQLRLLGSRILPAK-----------LTEKSDVYSFGVL 123
                    ++      G   LP K            T +SDV+SFGVL
Sbjct: 236 DFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVL 284

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 24/102 (23%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDH---LYNNHKPPLQ------WMWR 51
           L  L+HR+++ L      N  + L+++        ++    Y +  P +       ++++
Sbjct: 87  LKELQHRNIIELKSVIHHNHRLHLIFEYA------ENDLKKYMDKNPDVSMRVIKSFLYQ 140

Query: 52  LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKH 93
           L        G+++ H       +HRD+K  N+LL  +  ++ 
Sbjct: 141 L------INGVNFCH---SRRCLHRDLKPQNLLLSVSDASET 173

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 18/94 (19%), Positives = 44/94 (46%), Gaps = 16/94 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ------WMWRLKI 54
           L  L H ++V L+       ++ LV++ + +  L+  +  +    +       ++++L  
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQL-- 112

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
                +GL + H    + ++HRD+K  N+L++  
Sbjct: 113 ----LQGLAFCH---SHRVLHRDLKPQNLLINTE 139

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 25/98 (25%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDH----LYNNHKPPLQ------WMW 50
           L  L H +++ L+        + LV+D M      +     +  ++   L       +M 
Sbjct: 66  LQELSHPNIIGLLDAFGHKSNISLVFDFM------ETDLEVIIKDNSLVLTPSHIKAYML 119

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
                    +GL YLH   ++ I+HRD+K  N+LLDEN
Sbjct: 120 MT------LQGLEYLH---QHWILHRDLKPNNLLLDEN 148

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 18/101 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMA---RGTLRDHLYNNHKPPLQ------WMWR 51
           +  L+H ++V L        ++ LV++ M    +  +      N    L+      + W+
Sbjct: 57  MKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQ 116

Query: 52  LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           L       +GL + H    N I+HRD+K  N+L+++    K
Sbjct: 117 L------LQGLAFCH---ENKILHRDLKPQNLLINKRGQLK 148

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 25/102 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDH----LYNNHKPPLQ------WMW 50
           L  L+H+++V L      +K++ LV++        D      +++    L       +++
Sbjct: 55  LKELKHKNIVRLHDVLHSDKKLTLVFEFC------DQDLKKYFDSCNGDLDPEIVKSFLF 108

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           +L       +GL + H      ++HRD+K  N+L++ N   K
Sbjct: 109 QL------LKGLGFCH---SRNVLHRDLKPQNLLINRNGELK 141

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 25/98 (25%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDH----LYNNHKPPLQ------WMW 50
           L  L+H ++V L       K ++LV++ +      D     L +  +  L+      ++ 
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHL------DQDLKKLLDVCEGGLESVTAKSFLL 107

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           +L        G+ Y H      ++HRD+K  N+L++  
Sbjct: 108 QL------LNGIAYCH---DRRVLHRDLKPQNLLINRE 136

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 25/102 (24%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDH----LYNNHKPPLQ------WMW 50
           L  L H ++VSLI      + + LV++ M      +     + + +K  LQ      +++
Sbjct: 73  LKELHHPNIVSLIDVIHSERCLTLVFEFM------EKDLKKVLDENKTGLQDSQIKIYLY 126

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           +L       RG+ + H   ++ I+HRD+K  N+L++ +   K
Sbjct: 127 QL------LRGVAHCH---QHRILHRDLKPQNLLINSDGALK 159

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 25/98 (25%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDH----LYNNHKPPLQ------WMW 50
           L +L+H ++V+L       K + LV++ +      D       ++    +       +++
Sbjct: 54  LKDLKHANIVTLHDIIHTEKSLTLVFEYL------DKDLKQYLDDCGNIINMHNVKLFLF 107

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           +L       RGL Y H   R  ++HRD+K  N+L++E 
Sbjct: 108 QL------LRGLAYCH---RQKVLHRDLKPQNLLINER 136

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S      +V +        ++  + D M  G L  HL  +       M        AA 
Sbjct: 246 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADM-----RFYAAE 300

Query: 61  ---GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
              GL ++H      +++RD+K  NILLDE+
Sbjct: 301 IILGLEHMH---NRFVVYRDLKPANILLDEH 328

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 1   LSNLRHRHLVSLI------GHHVENKEMILVYDCMARGTLRDHLYNN-HKPPLQWMWRLK 53
           +  L H ++VS             N   +L  +    G LR +L    +   L+      
Sbjct: 66  MKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRT 125

Query: 54  ICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           +    +  L YLH    N IIHRD+K  NI+L   
Sbjct: 126 LLSDISSALRYLH---ENRIIHRDLKPENIVLQPG 157

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 25/102 (24%)

Query: 1   LSNLRHRHLVSLIGHHV-ENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L   RH H++ L  + V      I +V + ++ G L D++  N         RL      
Sbjct: 70  LKLFRHPHIIKL--YQVISTPSDIFMVMEYVSGGELFDYICKNG--------RLDE--KE 117

Query: 59  AR--------GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           +R        G+ Y H   R+ ++HRD+K  N+LLD +  AK
Sbjct: 118 SRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAK 156

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 25/102 (24%)

Query: 1   LSNLRHRHLVSLIGHHV-ENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           L   RH H++ L  + V        +V + ++ G L D++  +         R++     
Sbjct: 65  LKLFRHPHIIKL--YQVISTPTDFFMVMEYVSGGELFDYICKHG--------RVEE--ME 112

Query: 59  AR--------GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           AR         + Y H   R+ ++HRD+K  N+LLD +  AK
Sbjct: 113 ARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAK 151

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 25/101 (24%)

Query: 1   LSNLRHRHLVSL---IGHHVENKEMILVYDCMA---RGTLRDHLYNNHKPPLQ------- 47
           L  L+H +++SL      H + K + L++D         ++ H  +              
Sbjct: 72  LRELKHPNVISLQKVFLSHADRK-VWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMV 130

Query: 48  --WMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLD 86
              ++++        G+HYLH    N ++HRD+K  NIL+ 
Sbjct: 131 KSLLYQI------LDGIHYLH---ANWVLHRDLKPANILVM 162

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 21/103 (20%)

Query: 1   LSNLRHRHLVSLI-----GHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQ------WM 49
           L    H ++V L+            ++ LV++ + +  LR +L     P L        M
Sbjct: 68  LEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLM 126

Query: 50  WRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            +        RGL +LH    N I+HRD+K  NIL+      K
Sbjct: 127 RQF------LRGLDFLH---ANCIVHRDLKPENILVTSGGTVK 160

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 13/93 (13%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLK-----IC 55
           L  +  R +VSL   +     + LV   M  G L+ H+Y+  +       R       IC
Sbjct: 238 LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFP-EARAVFYAAEIC 296

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            G    L  LH   R  I++RD+K  NILLD++
Sbjct: 297 CG----LEDLH---RERIVYRDLKPENILLDDH 322

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 12/94 (12%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 1   LSNLRHRHLVSLIGH-HVENKEMILVYDCMARGTLRDHL-----YNNHKPPLQWMWRLKI 54
           + + + + ++ +                   +  L+        +++    L    RL++
Sbjct: 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQL 211

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            +   R L  LH      ++H  ++  +I+LD+ 
Sbjct: 212 TLQVIRLLASLH---HYGLVHTYLRPVDIVLDQR 242

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           R +  LH  + N + HRD+K  N+L++E 
Sbjct: 140 RSIGCLHLPSVN-VCHRDIKPHNVLVNEA 167

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 24/95 (25%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTL------RDHLYNNHKPPLQWMWRLKI 54
           ++ L H  L++L     +  EM+L+ + ++ G L       D+  +  +           
Sbjct: 102 MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAE----------- 150

Query: 55  CIGAAR----GLHYLHTGTRNTIIHRDVKSTNILL 85
            I   R    GL ++H    ++I+H D+K  NI+ 
Sbjct: 151 VINYMRQACEGLKHMH---EHSIVHLDIKPENIMC 182

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 30/98 (30%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTL------RDHLYNNHKPPLQWMWRLKI 54
           ++ L H +L+ L        +++LV + +  G L        +                 
Sbjct: 140 MNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELD----------- 188

Query: 55  CIGAAR-------GLHYLHTGTRNTIIHRDVKSTNILL 85
                        G+ ++H   +  I+H D+K  NIL 
Sbjct: 189 ---TILFMKQICEGIRHMH---QMYILHLDLKPENILC 220

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 25/102 (24%)

Query: 1   LSNLRHRHLVSLIGHHV-ENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGA 58
           +  L H ++V L    V E ++ + L+ +  + G + D+L  +         R+K     
Sbjct: 68  MKILNHPNIVKL--FEVIETEKTLYLIMEYASGGEVFDYLVAHG--------RMKE--KE 115

Query: 59  AR--------GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           AR         + Y H   +  I+HRD+K+ N+LLD +   K
Sbjct: 116 ARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIK 154

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            G +++H      IIHRD+K  N LL+++
Sbjct: 140 LGENFIHESG---IIHRDLKPANCLLNQD 165

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            GLH LH      ++HRD+   NILL +N
Sbjct: 145 LGLHVLHEAG---VVHRDLHPGNILLADN 170

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           R +  LH      +IHRD+K +N+L++ N
Sbjct: 123 RAVKVLHGSN---VIHRDLKPSNLLINSN 148

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           G+ YLH      IIHRD+K +N+L+ E+   K
Sbjct: 149 GIEYLH---YQKIIHRDIKPSNLLVGEDGHIK 177

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           + + YLH+G    ++HRD+K +NILL+  
Sbjct: 120 KVIKYLHSGG---LLHRDMKPSNILLNAE 145

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            G+ Y+H+     I+HRD+K  N L++++
Sbjct: 167 VGVKYVHSAG---ILHRDLKPANCLVNQD 192

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           +GL Y+H      IIHRD+K  N+ ++E+
Sbjct: 139 KGLRYIHAAG---IIHRDLKPGNLAVNED 164

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           +GL Y+H+     ++HRD+K  N+ ++E+
Sbjct: 137 KGLKYIHSAG---VVHRDLKPGNLAVNED 162

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQW-MWRLK-----I 54
           L+ +  R +VSL        ++ LV   M  G +R H+YN  +    +   R       I
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             G    L +LH   +  II+RD+K  N+LLD++
Sbjct: 299 VSG----LEHLH---QRNIIYRDLKPENVLLDDD 325

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 33/164 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L +L H +++ L     + K   LV +    G L + + N HK        +   I    
Sbjct: 100 LKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQI--LS 157

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---DENWVAK----------HSRERQLRLLGS--- 104
           G+ YLH    + I+HRD+K  NILL   +     K              +    LG+   
Sbjct: 158 GICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYY 214

Query: 105 ---RILPAKLTEKSDVYSFGV-----LCARPAMLP-MAENEQEV 139
               +L  K  EK DV+S GV     LC  P   P   +N+Q++
Sbjct: 215 IAPEVLKKKYNEKCDVWSCGVIMYILLCGYP---PFGGQNDQDI 255

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           RGL Y+H+     ++HRD+K +N+LL+  
Sbjct: 139 RGLKYIHSAN---VLHRDLKPSNLLLNTT 164

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 21/103 (20%)

Query: 1   LSNLRHRHLVSLI----GHHVENKEMI-LVYDCMARGTLRDHLYNNHKPPLQ------WM 49
           L    H ++V L         + +  + LV++ + +  L  +L    +P +        M
Sbjct: 68  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMM 126

Query: 50  WRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           ++L       RGL +LH    + ++HRD+K  NIL+  +   K
Sbjct: 127 FQL------LRGLDFLH---SHRVVHRDLKPQNILVTSSGQIK 160

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 18/97 (18%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPP-------LQWMWR 51
           L  L H+++V L         +  +L+ +    G+L   L              L  +  
Sbjct: 61  LKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRD 120

Query: 52  LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           +        G+++L     N I+HR++K  NI+    
Sbjct: 121 V------VGGMNHLR---ENGIVHRNIKPGNIMRVIG 148

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 43/169 (25%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHL-----YNNHKPPLQWMWRLKIC 55
           L  L H +++ L     +     LV +    G L D +     ++            +I 
Sbjct: 80  LKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDA-------ARII 132

Query: 56  IGAARGLHYLHTGTRNTIIHRDVKSTNILL---DENWVAK----------HSRERQLRLL 102
                G+ Y+H    N I+HRD+K  N+LL    ++   +           + ++    +
Sbjct: 133 RQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI 189

Query: 103 GS------RILPAKLTEKSDVYSFGV-----LCARPAMLP-MAENEQEV 139
           G+       +L     EK DV+S GV     L   P   P    NE ++
Sbjct: 190 GTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCP---PFNGANEYDI 235

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            GL+Y+H   RN I+HRD+K+ N+L+  + V K
Sbjct: 135 NGLYYIH---RNKILHRDMKAANVLITRDGVLK 164

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           RGL Y+H+     IIHRD+K +N+ ++E+
Sbjct: 143 RGLKYIHSAD---IIHRDLKPSNLAVNED 168

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 28/103 (27%)

Query: 1   LSNLRHRHLVSLIGHHV-ENKEMILVYDCM--ARGTLRDHLYNNHKPPLQWMWRLKICIG 57
           L  LRH H++ L  + V      I     +  A G L D++            R+     
Sbjct: 63  LKLLRHPHIIKL--YDVITTPTDI--VMVIEYAGGELFDYIVEKK--------RMTE--D 108

Query: 58  AAR--------GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
             R         + Y H   R+ I+HRD+K  N+LLD+N   K
Sbjct: 109 EGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVK 148

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           GL YLH      I+H+D+K  N+LL      K
Sbjct: 121 GLEYLH---SQGIVHKDIKPGNLLLTTGGTLK 149

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 18/97 (18%)

Query: 1   LSNLRHRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPP-------LQWMWR 51
           L  L H+++V L         +  +L+ +    G+L   L              L  +  
Sbjct: 61  LKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRD 120

Query: 52  LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           +        G+++L     N I+HR++K  NI+    
Sbjct: 121 V------VGGMNHLR---ENGIVHRNIKPGNIMRVIG 148

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 16/91 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL--KICIGA 58
           +S LRH  LV+L     ++ EM+++Y+ M+ G L + + + H        ++     +  
Sbjct: 208 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHN-------KMSEDEAVEY 260

Query: 59  AR----GLHYLHTGTRNTIIHRDVKSTNILL 85
            R    GL ++H    N  +H D+K  NI+ 
Sbjct: 261 MRQVCKGLCHMH---ENNYVHLDLKPENIMF 288

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 21/97 (21%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR--- 60
           L H ++V   GH  E     L  +  + G L D +  +   P             A+   
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEP----------DAQRFF 111

Query: 61  -----GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                G+ YLH      I HRD+K  N+LLDE    K
Sbjct: 112 HQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLK 145

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 26/103 (25%)

Query: 1   LSNLRHRHLVSLIGHHV-ENKEMI-LVYDCMARGT-LRDHLYNNHKPPLQWMWRLKICIG 57
           LS + H +++ +    + EN+    LV +    G  L   +  +         RL     
Sbjct: 83  LSRVEHANIIKV--LDIFENQGFFQLVMEKHGSGLDLFAFIDRHP--------RLDE--P 130

Query: 58  AAR--------GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
            A          + YL       IIHRD+K  NI++ E++  K
Sbjct: 131 LASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIK 170

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 25/95 (26%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTL------RDHLYNNHKPPLQWMWRLKI 54
           L  +RH ++++L        +++L+ + ++ G L      ++ L                
Sbjct: 62  LREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTE------------DE 109

Query: 55  CIGAAR----GLHYLHTGTRNTIIHRDVKSTNILL 85
                +    G+HYLH      I H D+K  NI+L
Sbjct: 110 ATQFLKQILDGVHYLH---SKRIAHFDLKPENIML 141

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 24/102 (23%)

Query: 1   LSNLRHRHLVSL---IGHHVENKEMI---LVYDCMARGTL----RDHLYNNHKPPLQ--- 47
           +  L H ++V L        E K+ +   LV D +   T+    R +       P+    
Sbjct: 101 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVK 159

Query: 48  -WMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            +M++L       R L Y+H+     I HRD+K  N+LLD +
Sbjct: 160 LYMYQL------FRSLAYIHS---FGICHRDIKPQNLLLDPD 192

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            G+ +LH+     IIHRD+K +NI++  +
Sbjct: 138 CGIKHLHSAG---IIHRDLKPSNIVVKSD 163

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 25/95 (26%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTL------RDHLYNNHKPPLQWMWRLKI 54
           L  + H ++++L   +    +++L+ + ++ G L      ++ L              + 
Sbjct: 69  LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSE------------EE 116

Query: 55  CIGAAR----GLHYLHTGTRNTIIHRDVKSTNILL 85
                +    G++YLH      I H D+K  NI+L
Sbjct: 117 ATSFIKQILDGVNYLH---TKKIAHFDLKPENIML 148

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 21/97 (21%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR--- 60
           L H ++V   GH  E     L  +  + G L D +  +          +      A+   
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--------GMPE--PDAQRFF 111

Query: 61  -----GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
                G+ YLH      I HRD+K  N+LLDE    K
Sbjct: 112 HQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLK 145

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 20/97 (20%)

Query: 1   LSNLRHRHLVSLI-----GHHVEN-KEMILVYDCMA---RGTLRDHLYNNHKPPLQWMWR 51
           +  + H++++SL+        +E  +++ LV + M       ++  L +       +   
Sbjct: 115 MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERM---SY--- 168

Query: 52  LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
             +      G+ +LH+     IIHRD+K +NI++  +
Sbjct: 169 --LLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSD 200

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
           R + ++H+     I HRD+K  N+L++  
Sbjct: 152 RAVGFIHSLG---ICHRDIKPQNLLVNSK 177

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 24/102 (23%)

Query: 1   LSNLRHRHLVSLI------GHHVENKEMILVYDCMARGTL----RDHLYNNHKPPLQ--- 47
           +  ++H ++V L       G   +   + LV + +   T+    R +       P+    
Sbjct: 86  MRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIK 144

Query: 48  -WMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            +M++L       R L Y+H+     I HRD+K  N+LLD  
Sbjct: 145 LYMYQL------LRSLAYIHS---IGICHRDIKPQNLLLDPP 177

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 25/95 (26%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTL------RDHLYNNHKPPLQWMWRLKI 54
           L  + H ++++L   +    +++L+ + ++ G L      ++ L              + 
Sbjct: 69  LRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSE------------EE 116

Query: 55  CIGAAR----GLHYLHTGTRNTIIHRDVKSTNILL 85
                +    G++YLH      I H D+K  NI+L
Sbjct: 117 ATSFIKQILDGVNYLH---TKKIAHFDLKPENIML 148

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            +  +H   R   +HRD+K  NILLD  
Sbjct: 174 AIDSVH---RLGYVHRDIKPDNILLDRC 198

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 33/164 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L H +++ L     + +   LV +C   G L D + +  K        +   +    
Sbjct: 90  LKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQV--LS 147

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---DENWVAK----------HSRERQLRLLGS--- 104
           G+ YLH    + I+HRD+K  N+LL   +++ + K           ++++    LG+   
Sbjct: 148 GVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYY 204

Query: 105 ---RILPAKLTEKSDVYSFGV-----LCARPAMLP-MAENEQEV 139
               +L  K  EK DV+S GV     L   P   P   + +QE+
Sbjct: 205 IAPEVLRKKYDEKCDVWSIGVILFILLAGYP---PFGGQTDQEI 245

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 25/95 (26%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTL------RDHLYNNHKPPLQWMWRLKI 54
           L  ++H ++++L   +    ++IL+ + +A G L      ++ L              + 
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE------------EE 115

Query: 55  CIGAAR----GLHYLHTGTRNTIIHRDVKSTNILL 85
                +    G++YLH      I H D+K  NI+L
Sbjct: 116 ATEFLKQILNGVYYLH---SLQIAHFDLKPENIML 147

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 62  LHYLHTGTRNTIIHRDVKSTNILLDEN 88
           L  +H       IHRDVK  N+LLD++
Sbjct: 181 LDAIH---SMGFIHRDVKPDNMLLDKS 204

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            +  +H   +   +HRD+K  NIL+D N
Sbjct: 187 AIDSVH---QLHYVHRDIKPDNILMDMN 211

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 24/95 (25%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTL------RDHLYNNHKPPLQWMWRLKI 54
           L+  RHR+++ L       +E++++++ ++   +           N            + 
Sbjct: 55  LNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNE-----------RE 103

Query: 55  CIGAAR----GLHYLHTGTRNTIIHRDVKSTNILL 85
            +         L +LH    + I H D++  NI+ 
Sbjct: 104 IVSYVHQVCEALQFLH---SHNIGHFDIRPENIIY 135

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            L YLH      I++RD+K  NILLD  
Sbjct: 151 ALGYLH---SLNIVYRDLKPENILLDSQ 175

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 3/27 (11%)

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLD 86
           RGL Y+H+     ++HRD+K  N+ ++
Sbjct: 131 RGLKYIHSAN---VLHRDLKPANLFIN 154

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL------KI 54
           L  L H  ++ +     + ++  +V + M  G L D +  N +        L        
Sbjct: 194 LKKLNHPCIIKIKNF-FDAEDYYIVLELMEGGELFDKVVGNKR--------LKEATCKLY 244

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
                  + YLH    N IIHRD+K  N+LL   
Sbjct: 245 FYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQ 275

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            +  LH   +  I+HRD+K  NILLD++
Sbjct: 136 VICALH---KLNIVHRDLKPENILLDDD 160

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            L YLH      +++RD+K  N++LD++
Sbjct: 117 ALEYLH---SRDVVYRDIKLENLMLDKD 141

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
            L +LH      II+RD+K  N+LLD  
Sbjct: 136 ALMFLH---DKGIIYRDLKLDNVLLDHE 160

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 21/96 (21%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S L H   V L     +++++         G L  ++                     R
Sbjct: 84  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDET----------CTR 133

Query: 61  --------GLHYLHTGTRNTIIHRDVKSTNILLDEN 88
                    L YLH      IIHRD+K  NILL+E+
Sbjct: 134 FYTAEIVSALEYLHG---KGIIHRDLKPENILLNED 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.97
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.97
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.97
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.97
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.97
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.97
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.97
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.97
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.97
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.97
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.97
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.97
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.97
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.97
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.97
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.97
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.97
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.97
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.97
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.97
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.96
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.96
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.96
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.96
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.96
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.96
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.96
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.96
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.96
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.96
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.96
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.96
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.96
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.96
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.96
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.96
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.96
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.96
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.96
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.96
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.96
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.96
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.96
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.96
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.96
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.96
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.96
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.96
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.96
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.96
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.96
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.96
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.96
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.96
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.96
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.96
3niz_A	311	Rhodanese family protein; structural genomics, str	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.96
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.96
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.96
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.96
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.96
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.96
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.96
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.96
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.96
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.96
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.96
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.96
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.96
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.96
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.96
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.96
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.96
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.96
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.96
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.96
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.96
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.96
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.96
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.96
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.96
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.96
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.96
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.96
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.96
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.96
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.96
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.96
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.96
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.96
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.96
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.96
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.96
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.96
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.96
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.96
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.96
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.96
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.96
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.96
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.96
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.96
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.96
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.96
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.96
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.96
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.96
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.96
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.96
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.96
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.95
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.95
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.95
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.95
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.95
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.95
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.95
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.95
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.95
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.95
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.95
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.95
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.95
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.95
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.95
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.95
3bhy_A	283	Death-associated protein kinase 3; death associate	99.95
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.95
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.95
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.95
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.95
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.95
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.95
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.95
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.95
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.95
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.95
3uqc_A	286	Probable conserved transmembrane protein; structur	99.95
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.95
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.95
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.95
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.95
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.95
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.95
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.95
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.95
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.95
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.95
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.95
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.95
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.95
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.95
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.95
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.95
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.95
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.95
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.95
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.95
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.95
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.95
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.95
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.95
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.95
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.95
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.95
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.95
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.95
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.95
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.95
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.95
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.95
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.95
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.95
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.95
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.95
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.95
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.95
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.95
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.95
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.95
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.95
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.95
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.95
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.95
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.94
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.94
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.94
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.94
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.94
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.94
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.94
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.94
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.94
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.94
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.94
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.94
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.94
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.94
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.94
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.94
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.94
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.94
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.94
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.94
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.94
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.94
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.94
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.94
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.94
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.94
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.94
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.94
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.93
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.93
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.93
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.93
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.93
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.93
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.93
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.92
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.92
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.92
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.91
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.87
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.72
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.55
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.33
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.07
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.54
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.39
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.25
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.47
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.38
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.33
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	96.79
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	96.79
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.69
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	95.39
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	94.27
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	93.04
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	92.53
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	91.86
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	90.55
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	90.33
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	90.19
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	89.83
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	89.13
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	88.61
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	87.89
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	87.18
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	86.47
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	84.34
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	83.9
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	82.72

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=2.1e-41  Score=233.07  Aligned_cols=135  Identities=23%  Similarity=0.266  Sum_probs=120.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||++++++.+++.+|+|||||++|+|.+++.......+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus        77 l~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp  153 (350)
T 4b9d_A           77 LANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKS  153 (350)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCG
T ss_pred             HHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCH
Confidence            3568999999999999999999999999999999999976666678899999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +|||++.++.+|++|||+++                  ++||.+....|+.++||||+||++|||+++..||....
T Consensus       154 ~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~  229 (350)
T 4b9d_A          154 QNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS  229 (350)
T ss_dssp             GGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             HHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence            99999999999999999874                  23444556789999999999999999999988887543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=8.9e-41  Score=226.47  Aligned_cols=134  Identities=30%  Similarity=0.389  Sum_probs=117.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC-----------CCCCCcHHHHHHHHHHHHHHHhHhhcCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN-----------HKPPLQWMWRLKICIGAARGLHYLHTGT   69 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~lh~~~   69 (143)
                      |++++|||||+++|+|.+++.+++||||+++|+|.+++...           ....+++..+..++.|++.|+.|||+  
T Consensus        69 l~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~--  146 (299)
T 4asz_A           69 LTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS--  146 (299)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHh--
Confidence            57899999999999999999999999999999999999643           23578999999999999999999998  


Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                       ++++||||||+|||++.++.+|++|||+++.                    +|+.+....++.++|||||||++|||+|
T Consensus       147 -~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt  225 (299)
T 4asz_A          147 -QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT  225 (299)
T ss_dssp             -TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             -CCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHc
Confidence             8999999999999999999999999998742                    2333445688999999999999999998


Q ss_pred             -ccCCCCcc
Q 041845          130 -LPMAENEQ  137 (143)
Q Consensus       130 -~~~~~~~~  137 (143)
                       +..|+...
T Consensus       226 ~G~~Pf~~~  234 (299)
T 4asz_A          226 YGKQPWYQL  234 (299)
T ss_dssp             TTCCTTTTS
T ss_pred             CCCCCCCCC
Confidence             77777643

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=4.4e-40  Score=225.56  Aligned_cols=132  Identities=21%  Similarity=0.163  Sum_probs=117.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||||++++++.+++.+|+||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus       104 l~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp  178 (336)
T 4g3f_A          104 CAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKA  178 (336)
T ss_dssp             TTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCG
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceecccCH
Confidence            57899999999999999999999999999999999999654  378999999999999999999998   8999999999


Q ss_pred             CcEEEcCCC-cccccccchhhc-----------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENW-VAKHSRERQLRL-----------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~-~~k~~~~~~~~~-----------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|||++.++ .+|++|||++..                       +||.+....++.++||||+||++|||+++..||..
T Consensus       179 ~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~  258 (336)
T 4g3f_A          179 DNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQ  258 (336)
T ss_dssp             GGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred             HHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCC
Confidence            999999887 599999997642                       23445567789999999999999999999888865


Q ss_pred             c
Q 041845          137 Q  137 (143)
Q Consensus       137 ~  137 (143)
                      .
T Consensus       259 ~  259 (336)
T 4g3f_A          259 Y  259 (336)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=8.6e-41  Score=226.83  Aligned_cols=133  Identities=20%  Similarity=0.234  Sum_probs=117.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++++|.+++.+|+||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus        86 l~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKP  160 (311)
T 4aw0_A           86 MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKP  160 (311)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSG
T ss_pred             HHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCCH
Confidence            46889999999999999999999999999999999999654  378999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +|||++.++.+|++|||++...                    ||.+....++.++||||+||++|+|+++..||....
T Consensus       161 eNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~  238 (311)
T 4aw0_A          161 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN  238 (311)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999987532                    222334578899999999999999999998887543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.5e-40  Score=225.34  Aligned_cols=132  Identities=24%  Similarity=0.182  Sum_probs=118.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||++++++.+++.+|+||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus        80 l~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp  154 (304)
T 3ubd_A           80 LVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHS---LGIIYRDLKP  154 (304)
T ss_dssp             CCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCG
T ss_pred             HHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCH
Confidence            57899999999999999999999999999999999999654  378999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++.+|++|||++..                  +||.+....++.++||||+||++|||+++..||...
T Consensus       155 ~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~  229 (304)
T 3ubd_A          155 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK  229 (304)
T ss_dssp             GGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence            999999999999999998742                  233344567899999999999999999999888754

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2e-40  Score=227.94  Aligned_cols=131  Identities=20%  Similarity=0.277  Sum_probs=117.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++++|.+++.+|+|||||++|+|.+++...   .+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus       125 l~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp  198 (346)
T 4fih_A          125 MRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKS  198 (346)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCH
Confidence            35689999999999999999999999999999999998643   68899999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++.+|++|||++..                  +||.+....|+.++||||+||++|||+++..||...
T Consensus       199 ~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  273 (346)
T 4fih_A          199 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  273 (346)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            999999999999999998642                  333345567899999999999999999998888654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=223.80  Aligned_cols=134  Identities=28%  Similarity=0.391  Sum_probs=115.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-------------CCCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-------------KPPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      |++++|||||+++|+|.+++.+++||||+++|+|.+++....             ...+++..+..++.|++.|+.|||+
T Consensus        97 l~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~  176 (329)
T 4aoj_A           97 LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG  176 (329)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999986432             2468899999999999999999998


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhh--------------------ccccccCCCCCCCcccchhhhhhhhcc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLR--------------------LLGSRILPAKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~--------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~  127 (143)
                         .+|+||||||+|||++.++.+|++|||+++                    ++||.+....++.++|||||||++|||
T Consensus       177 ---~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~El  253 (329)
T 4aoj_A          177 ---LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEI  253 (329)
T ss_dssp             ---TTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             ---CCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHH
Confidence               899999999999999999999999999864                    233445567889999999999999999


Q ss_pred             cc-ccCCCCcc
Q 041845          128 AM-LPMAENEQ  137 (143)
Q Consensus       128 ~~-~~~~~~~~  137 (143)
                      +| +..|+...
T Consensus       254 lt~G~~Pf~~~  264 (329)
T 4aoj_A          254 FTYGKQPWYQL  264 (329)
T ss_dssp             HTTSCCTTCSS
T ss_pred             HcCCCCCCCCC
Confidence            98 67777643

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-39  Score=220.00  Aligned_cols=131  Identities=28%  Similarity=0.395  Sum_probs=113.2

Q ss_pred             CCCCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC--ee
Q 041845            1 LSNLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT--II   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~--i~   74 (143)
                      |++++|||||+++++|.+    ++.+++||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   ++  |+
T Consensus        79 l~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~---~~~~Ii  153 (290)
T 3fpq_A           79 LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHT---RTPPII  153 (290)
T ss_dssp             HHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCC
T ss_pred             HHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCCEE
Confidence            467899999999999865    34689999999999999999654  478899999999999999999997   66  99


Q ss_pred             ecCCCCCcEEEcC-CCcccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLDE-NWVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~~-~~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||||||+|||++. ++.+|++|||++.               +++++...+.++.++|||||||++|||+|+..|+..
T Consensus       154 HRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~  231 (290)
T 3fpq_A          154 HRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSE  231 (290)
T ss_dssp             CCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            9999999999984 7899999999875               233334556799999999999999999999888864

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=219.93  Aligned_cols=131  Identities=26%  Similarity=0.374  Sum_probs=112.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++|++.+ +.+++||||+++|+|.+++... ...+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus        86 l~~l~HpNIV~l~g~~~~-~~~~iVmEy~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp  160 (307)
T 3omv_A           86 LRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKS  160 (307)
T ss_dssp             HTTCCCTTBCCEEEEECS-SSCEEEEECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCS
T ss_pred             HHhCCCCCEeeEEEEEEC-CeEEEEEEcCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCccCH
Confidence            478999999999998754 5689999999999999999543 3578999999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccC---CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRIL---PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~---~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|||++.++.+|++|||++...                    |+.+.   ...++.++|||||||++|||+|+..|+..
T Consensus       161 ~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~  239 (307)
T 3omv_A          161 NNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSH  239 (307)
T ss_dssp             SSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCC
Confidence            9999999999999999987421                    22221   23578899999999999999999888864

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=228.60  Aligned_cols=131  Identities=20%  Similarity=0.277  Sum_probs=117.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||||+++++|.+++.+|+|||||++|+|.+++...   .+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus       202 l~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp  275 (423)
T 4fie_A          202 MRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKS  275 (423)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCST
T ss_pred             HHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHH---CCeecccCCH
Confidence            35689999999999999999999999999999999998543   58899999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++.+|++|||++..                  +||.+....|+.++||||+||++|||+++..||...
T Consensus       276 ~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  350 (423)
T 4fie_A          276 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  350 (423)
T ss_dssp             TTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            999999999999999998642                  333345678899999999999999999998888654

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=7.4e-40  Score=222.76  Aligned_cols=132  Identities=21%  Similarity=0.334  Sum_probs=114.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      ++++|||||+++|+|.+++.+++||||+++|+|.+++....              ...+++..+..++.|++.|+.|||+
T Consensus        84 ~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~  163 (308)
T 4gt4_A           84 ARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS  163 (308)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999999999995432              2357889999999999999999998


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~  127 (143)
                         .+++||||||+|||+++++.+|++|||+++.                    +|+.+..+.++.++|||||||++|||
T Consensus       164 ---~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El  240 (308)
T 4gt4_A          164 ---HHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEV  240 (308)
T ss_dssp             ---TTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ---CCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHH
Confidence               8999999999999999999999999998642                    22233456789999999999999999


Q ss_pred             cc-ccCCCCc
Q 041845          128 AM-LPMAENE  136 (143)
Q Consensus       128 ~~-~~~~~~~  136 (143)
                      +| +..|+..
T Consensus       241 ~t~g~~Pf~~  250 (308)
T 4gt4_A          241 FSYGLQPYCG  250 (308)
T ss_dssp             HTTTCCTTTT
T ss_pred             HhCCCCCCCC
Confidence            98 6666654

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=8.6e-39  Score=214.17  Aligned_cols=132  Identities=23%  Similarity=0.274  Sum_probs=114.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||++++++.+++.+|+||||+ +|+|.+.+.++  ..+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus        67 l~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDiKP  140 (275)
T 3hyh_A           67 LRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHR---HKIVHRDLKP  140 (275)
T ss_dssp             HHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCT
T ss_pred             HHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCh
Confidence            35689999999999999999999999999 57999998654  478999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCC-CCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +|||++.++.+|++|||++..                 +||.+....+ +.++||||+||++|+|+++..|+....
T Consensus       141 ~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~  216 (275)
T 3hyh_A          141 ENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES  216 (275)
T ss_dssp             TTEEECTTCCEEECCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC
Confidence            999999999999999998752                 2333444555 578999999999999999998887543

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=3.9e-37  Score=208.76  Aligned_cols=126  Identities=20%  Similarity=0.322  Sum_probs=106.4

Q ss_pred             CCCCCCCCcceeeEEeecCC------------chhhhHhhhcCCCHHHHhhcCCC-CCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            1 LSNLRHRHLVSLIGHHVENK------------EMILVYDCMARGTLRDHLYNNHK-PPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------------~~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      |++++|||||+++++|.+.+            .+|++||||++|+|.+++..... ...++..+..++.|++.|+.|||+
T Consensus        57 l~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~  136 (299)
T 4g31_A           57 LAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS  136 (299)
T ss_dssp             HTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999997544            36899999999999999965432 223456678899999999999998


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhh------------------------------ccccccCCCCCCCcccc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLR------------------------------LLGSRILPAKLTEKSDV  117 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~------------------------------~~~~~~~~~~~~~~~Di  117 (143)
                         ++|+||||||+|||++.++.+|++|||++.                              ++||.+....++.++||
T Consensus       137 ---~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~Di  213 (299)
T 4g31_A          137 ---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDI  213 (299)
T ss_dssp             ---TTCCCCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHH
T ss_pred             ---CcCccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHH
Confidence               899999999999999999999999999763                              23344556788999999


Q ss_pred             hhhhhhhhcccc
Q 041845          118 YSFGVLCARPAM  129 (143)
Q Consensus       118 ~s~G~~~~~~~~  129 (143)
                      ||+||++|||++
T Consensus       214 wSlGvilyell~  225 (299)
T 4g31_A          214 FSLGLILFELLY  225 (299)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcc
Confidence            999999999997

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.1e-37  Score=215.40  Aligned_cols=133  Identities=26%  Similarity=0.291  Sum_probs=111.9

Q ss_pred             CCCC-CCCcceeeEEeecC-CchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHh
Q 041845            2 SNLR-HRHLVSLIGHHVEN-KEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYL   65 (143)
Q Consensus         2 ~~l~-h~niv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~l   65 (143)
                      ++++ |||||+++|+|.++ +.+++|||||++|+|.+++.+..              ...+++..+..++.|++.|+.||
T Consensus       122 ~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yL  201 (353)
T 4ase_A          122 IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL  201 (353)
T ss_dssp             HHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhH
Confidence            3454 59999999998764 56899999999999999996432              23578899999999999999999


Q ss_pred             hcCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhh
Q 041845           66 HTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCA  125 (143)
Q Consensus        66 h~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~  125 (143)
                      |+   ++++||||||+|||++.++.+|++|||+++.                    +|+.+....++.++|||||||++|
T Consensus       202 H~---~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~  278 (353)
T 4ase_A          202 AS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLW  278 (353)
T ss_dssp             HH---TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             hh---CCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHH
Confidence            98   8999999999999999999999999998752                    233344567899999999999999


Q ss_pred             cccc-ccCCCCcc
Q 041845          126 RPAM-LPMAENEQ  137 (143)
Q Consensus       126 ~~~~-~~~~~~~~  137 (143)
                      ||+| +..|+...
T Consensus       279 El~t~G~~Pf~~~  291 (353)
T 4ase_A          279 EIFSLGASPYPGV  291 (353)
T ss_dssp             HHTTTSCCSSTTC
T ss_pred             HHHhCCCCCCCCC
Confidence            9998 67777643

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.9e-37  Score=209.24  Aligned_cols=131  Identities=24%  Similarity=0.283  Sum_probs=106.6

Q ss_pred             CCCCCCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcC-----CCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTG-----TRN   71 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~-----~~~   71 (143)
                      +++++|||||+++|++.+++    .+++||||+++|+|.+++...   .+++.....++.|++.|+.|||+.     ...
T Consensus        51 ~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~  127 (303)
T 3hmm_A           51 TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP  127 (303)
T ss_dssp             STTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC
T ss_pred             HhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Confidence            35789999999999998654    579999999999999999643   578899999999999999999961     013


Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhcc----------------------ccccCCC------CCCCcccchhhhhh
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRLL----------------------GSRILPA------KLTEKSDVYSFGVL  123 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~------~~~~~~Di~s~G~~  123 (143)
                      +|+||||||+|||++.++.+|++|||+++..                      ||.+...      .++.++|||||||+
T Consensus       128 ~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvv  207 (303)
T 3hmm_A          128 AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLV  207 (303)
T ss_dssp             CEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHH
T ss_pred             CEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHH
Confidence            8999999999999999999999999986421                      1112111      24668999999999


Q ss_pred             hhccccccCCC
Q 041845          124 CARPAMLPMAE  134 (143)
Q Consensus       124 ~~~~~~~~~~~  134 (143)
                      +|||+|+..++
T Consensus       208 l~El~tg~~~~  218 (303)
T 3hmm_A          208 FWEIARRCSIG  218 (303)
T ss_dssp             HHHHHHTBCBT
T ss_pred             HHHHHHCCCCC
Confidence            99999975443

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2.1e-36  Score=221.59  Aligned_cols=131  Identities=18%  Similarity=0.150  Sum_probs=116.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++|||||+++++|.+++.+|+||||+++|+|.+++.+.  ..+++..+..++.||+.|+.|||+   ++|+||||||+
T Consensus       247 ~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~---~gIiHRDLKPe  321 (689)
T 3v5w_A          247 STGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPA  321 (689)
T ss_dssp             SSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGG
T ss_pred             hhCCCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCchH
Confidence            5679999999999999999999999999999999999654  478999999999999999999998   99999999999


Q ss_pred             cEEEcCCCcccccccchhh----------------ccccccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLR----------------LLGSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~----------------~~~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||++.+|.+|++|||++.                ++|+.+. +..|+.++|+||+||++|||++|..||...
T Consensus       322 NILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~  394 (689)
T 3v5w_A          322 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  394 (689)
T ss_dssp             GEEECTTSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGG
T ss_pred             HeEEeCCCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999874                2233343 346899999999999999999999998653

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=7.9e-35  Score=201.94  Aligned_cols=123  Identities=15%  Similarity=0.137  Sum_probs=107.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||++++++|.+++.+++||||+++++|.+.+.     .+++..+..++.|++.|+.|||+   ++|+||||||+|||
T Consensus        78 ~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~---~gIiHRDiKPeNiL  149 (361)
T 4f9c_A           78 GQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQ---FGIVHRDVKPSNFL  149 (361)
T ss_dssp             SBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEE
T ss_pred             CCCCCceEEEEEEECCEEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHH---CCeEeCcCCHHHeE
Confidence            69999999999999999999999999999999882     47889999999999999999998   99999999999999


Q ss_pred             EcCC-Ccccccccchhhc----------------------------------------------cccccCCC-CCCCccc
Q 041845           85 LDEN-WVAKHSRERQLRL----------------------------------------------LGSRILPA-KLTEKSD  116 (143)
Q Consensus        85 ~~~~-~~~k~~~~~~~~~----------------------------------------------~~~~~~~~-~~~~~~D  116 (143)
                      ++.+ +.+|++|||+++.                                              +||.+... .++.++|
T Consensus       150 l~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~D  229 (361)
T 4f9c_A          150 YNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAID  229 (361)
T ss_dssp             EETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHH
T ss_pred             EeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccc
Confidence            9876 7899999998631                                              22223333 4789999


Q ss_pred             chhhhhhhhccccccCCCC
Q 041845          117 VYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus       117 i~s~G~~~~~~~~~~~~~~  135 (143)
                      |||+||++|||++|..|+.
T Consensus       230 iWSlG~il~ell~G~~Pf~  248 (361)
T 4f9c_A          230 MWSAGVIFLSLLSGRYPFY  248 (361)
T ss_dssp             HHHHHHHHHHHHHTCSSSS
T ss_pred             hhhhHHHHHHHHHCCCCCC
Confidence            9999999999999987774

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.4e-35  Score=205.30  Aligned_cols=131  Identities=23%  Similarity=0.324  Sum_probs=110.7

Q ss_pred             CCCCCCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      |+.++|||||++++++...      +.+|+||||++ |+|.+.+.+.  ..+++..+..++.|++.|+.|||+   ++|+
T Consensus       107 l~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH~---~~ii  180 (398)
T 4b99_A          107 LKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMHS---AQVI  180 (398)
T ss_dssp             HHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHHH---TTCB
T ss_pred             HHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CcCc
Confidence            3568999999999997643      56899999996 6899998543  478999999999999999999998   9999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhc----------------------cccccCCC-CCCCcccchhhhhhhhcccccc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRL----------------------LGSRILPA-KLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~----------------------~~~~~~~~-~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      ||||||+|||++.++.+|++|||+++.                      +|+.+.+. .++.++||||+||++|||+++.
T Consensus       181 HRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~  260 (398)
T 4b99_A          181 HRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARR  260 (398)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTS
T ss_pred             CCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCC
Confidence            999999999999999999999998742                      22223333 4688999999999999999998


Q ss_pred             CCCCcc
Q 041845          132 MAENEQ  137 (143)
Q Consensus       132 ~~~~~~  137 (143)
                      .||...
T Consensus       261 ~pF~g~  266 (398)
T 4b99_A          261 QLFPGK  266 (398)
T ss_dssp             CSSCCS
T ss_pred             CCCCCC
Confidence            888644

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=5.9e-35  Score=212.75  Aligned_cols=133  Identities=21%  Similarity=0.228  Sum_probs=116.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++|||||+++++|.+++.++++|||+++|+|.+++... ...+++..+..++.|++.|+.|||+   ++|+||||||
T Consensus       208 l~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHRDlKp  283 (573)
T 3uto_A          208 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKP  283 (573)
T ss_dssp             HHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCCG
T ss_pred             HHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccCCh
Confidence            35689999999999999999999999999999999998543 3478999999999999999999998   9999999999


Q ss_pred             CcEEEcCC--Ccccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDEN--WVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~--~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.+  +.+|++|||++..                 +|+.+....++.++||||+||++|+|+++..||...
T Consensus       284 ~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~  359 (573)
T 3uto_A          284 ENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  359 (573)
T ss_dssp             GGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            99999854  7899999998742                 334455678899999999999999999998887644

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.97  E-value=3.6e-32  Score=190.18  Aligned_cols=132  Identities=22%  Similarity=0.279  Sum_probs=115.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        81 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp~  157 (389)
T 3gni_B           81 KLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHH---MGYVHRSVKAS  157 (389)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHH
Confidence            467899999999999999999999999999999999976655678899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhh-------------------------ccccccCC--CCCCCcccchhhhhhhhccccccCCC
Q 041845           82 NILLDENWVAKHSRERQLR-------------------------LLGSRILP--AKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~-------------------------~~~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ||+++.++.++++|||.+.                         .+|+.+..  ..++.++||||+||++|+|+++..|+
T Consensus       158 NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf  237 (389)
T 3gni_B          158 HILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPF  237 (389)
T ss_dssp             GEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCC
Confidence            9999999999999997642                         23333333  46889999999999999999988887


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       238 ~~  239 (389)
T 3gni_B          238 KD  239 (389)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.97  E-value=5.5e-32  Score=185.06  Aligned_cols=131  Identities=21%  Similarity=0.251  Sum_probs=115.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+....++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        61 ~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~  135 (318)
T 1fot_A           61 SIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPE  135 (318)
T ss_dssp             HSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGG
T ss_pred             hhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChh
Confidence            4679999999999999999999999999999999999654  368889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+..               +|+......++.++|+||+||++|||+++..|+...
T Consensus       136 NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  206 (318)
T 1fot_A          136 NILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  206 (318)
T ss_dssp             GEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             eEEEcCCCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            99999999999999997642               233344567889999999999999999988887543

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.97  E-value=5.8e-32  Score=186.26  Aligned_cols=131  Identities=20%  Similarity=0.191  Sum_probs=115.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+.+.+++||||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        60 ~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~  134 (337)
T 1o6l_A           60 QNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLE  134 (337)
T ss_dssp             HSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGG
T ss_pred             HhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCCHH
Confidence            4679999999999999999999999999999999988643  367889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+.                  .+|+.+....++.++|+||+||++|||+++..|+...
T Consensus       135 NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  208 (337)
T 1o6l_A          135 NLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             GEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC
Confidence            9999999999999999754                  2334445567899999999999999999988887643

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=182.80  Aligned_cols=131  Identities=27%  Similarity=0.396  Sum_probs=114.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        61 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~dlkp  136 (310)
T 3s95_A           61 MRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLHS---MNIIHRDLNS  136 (310)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCST
T ss_pred             HHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCc
Confidence            46789999999999999999999999999999999999653 3468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh--------------------------------ccccccCCCCCCCcccchhhhhhhhccc
Q 041845           81 TNILLDENWVAKHSRERQLR--------------------------------LLGSRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~--------------------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      +||+++.++.++++|||.+.                                .+|+......++.++||||||+++|+|+
T Consensus       137 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  216 (310)
T 3s95_A          137 HNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEII  216 (310)
T ss_dssp             TSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             CeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHh
Confidence            99999999999999999763                                2333345567789999999999999999


Q ss_pred             cccCCCC
Q 041845          129 MLPMAEN  135 (143)
Q Consensus       129 ~~~~~~~  135 (143)
                      ++..++.
T Consensus       217 ~g~~~~~  223 (310)
T 3s95_A          217 GRVNADP  223 (310)
T ss_dssp             HTCCSST
T ss_pred             cCCCCCc
Confidence            8765554

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=9.2e-32  Score=187.44  Aligned_cols=131  Identities=21%  Similarity=0.157  Sum_probs=114.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+.+.+++||||+++++|.+.+.+.  ..+.+..+..++.|++.|+.|||+   .+++||||||+
T Consensus        94 ~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~  168 (373)
T 2r5t_A           94 KNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHS---LNIVYRDLKPE  168 (373)
T ss_dssp             CCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred             HhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHH
Confidence            5679999999999999999999999999999999998653  367888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+..                  +|+.+....++.++|+|||||++|||+++..|+...
T Consensus       169 NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  242 (373)
T 2r5t_A          169 NILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  242 (373)
T ss_dssp             GEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999997642                  222234556789999999999999999988887643

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.97  E-value=3.9e-32  Score=192.61  Aligned_cols=132  Identities=18%  Similarity=0.132  Sum_probs=114.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||++++++|.+++.+++||||+++|+|.+++.+. ...+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus       129 ~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~  204 (437)
T 4aw2_A          129 VNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVHQ---LHYVHRDIKPD  204 (437)
T ss_dssp             HHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHh---CCeEecccCHH
Confidence            3568999999999999999999999999999999999543 3478899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccC-----CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRIL-----PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||++.++.+|++|||.+...                   |+.+.     ...++.++|+||+||++|||+++..|+...
T Consensus       205 NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~  284 (437)
T 4aw2_A          205 NILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  284 (437)
T ss_dssp             GEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999976321                   12121     345788999999999999999998887654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.97  E-value=7.2e-32  Score=182.81  Aligned_cols=130  Identities=21%  Similarity=0.281  Sum_probs=114.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++..++..++||||+++++|.+++...   .+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        72 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp~  145 (297)
T 3fxz_A           72 RENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSD  145 (297)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             hcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHH
Confidence            4578999999999999999999999999999999998653   57889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+..                  +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       146 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  219 (297)
T 3fxz_A          146 NILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (297)
T ss_dssp             GEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999997542                  223334556789999999999999999988887643

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.97  E-value=1.9e-31  Score=185.16  Aligned_cols=132  Identities=20%  Similarity=0.193  Sum_probs=114.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.++...++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        69 l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp  143 (361)
T 2yab_A           69 LRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKP  143 (361)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCH
Confidence            46789999999999999999999999999999999999543  478999999999999999999998   8999999999


Q ss_pred             CcEEEcCCC----cccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENW----VAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~----~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++    .+|++|||.+..                 +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       144 ~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~  221 (361)
T 2yab_A          144 ENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  221 (361)
T ss_dssp             GGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             HHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            999998776    689999997642                 223334457889999999999999999988887543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.97  E-value=4.9e-32  Score=186.00  Aligned_cols=132  Identities=21%  Similarity=0.233  Sum_probs=113.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        69 ~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~  143 (328)
T 3fe3_A           69 KILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQ---KRIVHRDLKAE  143 (328)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGG
T ss_pred             HhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCCHH
Confidence            4678999999999999999999999999999999998654  368889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-----------------ccccCCCCC-CCcccchhhhhhhhccccccCCCCccc
Q 041845           82 NILLDENWVAKHSRERQLRLL-----------------GSRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      ||+++.++.+|++|||.+...                 |+.+....+ +.++|+||+||++|+|+++..|+....
T Consensus       144 NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  218 (328)
T 3fe3_A          144 NLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN  218 (328)
T ss_dssp             GEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HEEEcCCCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC
Confidence            999999999999999976422                 222233344 478999999999999999988886543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.97  E-value=1e-31  Score=186.99  Aligned_cols=132  Identities=24%  Similarity=0.364  Sum_probs=112.7

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhh
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLH   66 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh   66 (143)
                      +.+ +||||+++++++.+++.+++||||+++++|.+++....              ...+++..+..++.|++.|+.|||
T Consensus       141 ~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH  220 (370)
T 2psq_A          141 KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA  220 (370)
T ss_dssp             HHSCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            346 89999999999999999999999999999999986543              235788889999999999999999


Q ss_pred             cCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhc
Q 041845           67 TGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        67 ~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~  126 (143)
                      +   .+++||||||+||+++.++.+|++|||.+..                    +|+.+....++.++|+|||||++||
T Consensus       221 ~---~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~e  297 (370)
T 2psq_A          221 S---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE  297 (370)
T ss_dssp             H---TTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             h---CCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHH
Confidence            8   8999999999999999999999999997642                    2222334567889999999999999


Q ss_pred             ccc-ccCCCCc
Q 041845          127 PAM-LPMAENE  136 (143)
Q Consensus       127 ~~~-~~~~~~~  136 (143)
                      |++ +..|+..
T Consensus       298 llt~g~~p~~~  308 (370)
T 2psq_A          298 IFTLGGSPYPG  308 (370)
T ss_dssp             HHTTSCCSSTT
T ss_pred             HHcCCCCCCCC
Confidence            998 7777654

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.97  E-value=1.6e-31  Score=184.95  Aligned_cols=132  Identities=20%  Similarity=0.181  Sum_probs=116.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++.+++||||+++++|.+++.+.  ..+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus        95 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp  169 (350)
T 1rdq_E           95 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKP  169 (350)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCcc
Confidence            46789999999999999999999999999999999999654  368899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..               +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       170 ~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  241 (350)
T 1rdq_E          170 ENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ceEEECCCCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC
Confidence            999999999999999997642               333345667899999999999999999988777543

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.97  E-value=1.4e-31  Score=181.17  Aligned_cols=132  Identities=25%  Similarity=0.286  Sum_probs=115.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++++||||+++++++.+++..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        65 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~Dlkp  139 (294)
T 4eqm_A           65 SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHD---MRIVHRDIKP  139 (294)
T ss_dssp             HTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCG
T ss_pred             HhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCH
Confidence            36789999999999999999999999999999999998654  368899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+...                   |+......++.++|+||+|+++|+|+++..|+...
T Consensus       140 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~  215 (294)
T 4eqm_A          140 QNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE  215 (294)
T ss_dssp             GGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             HHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999976422                   22233456788999999999999999988887654

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.97  E-value=3.3e-31  Score=185.20  Aligned_cols=129  Identities=26%  Similarity=0.256  Sum_probs=113.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+....++||||+.+++|..++...  ..+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        70 ~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~  144 (384)
T 4fr4_A           70 QGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQN---QRIIHRDMKPD  144 (384)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCcHH
Confidence            5689999999999999999999999999999999999643  468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-----------------cccccC---CCCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRL-----------------LGSRIL---PAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-----------------~~~~~~---~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+++.++.++++|||.+..                 +|+.+.   ...++.++|+||+||++|+|+++..|+.
T Consensus       145 NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~  218 (384)
T 4fr4_A          145 NILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYH  218 (384)
T ss_dssp             GEEECTTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred             HeEECCCCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCC
Confidence            99999999999999997642                 222222   2357889999999999999999888875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.97  E-value=5.9e-32  Score=190.34  Aligned_cols=130  Identities=19%  Similarity=0.199  Sum_probs=112.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||++++++|.++..+++||||+++|+|.+++...   .+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus       124 ~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~---~givHrDLKp~  197 (410)
T 3v8s_A          124 AFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHS---MGFIHRDVKPD  197 (410)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCCHH
Confidence            3578999999999999999999999999999999998543   57889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCC----CCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAK----LTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~----~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+...                   |+.+....    ++.++|+|||||++|||+++..|+...
T Consensus       198 NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  276 (410)
T 3v8s_A          198 NMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  276 (410)
T ss_dssp             GEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC
Confidence            999999999999999986422                   11122222    678999999999999999998887644

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.4e-31  Score=183.18  Aligned_cols=132  Identities=16%  Similarity=0.173  Sum_probs=113.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+.+..+++|||+++++|.+.+... ...+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        56 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~---~givH~Dlkp~  131 (321)
T 1tki_A           56 NIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPE  131 (321)
T ss_dssp             HHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGG
T ss_pred             HhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCHH
Confidence            4578999999999999999999999999999999999543 3468899999999999999999998   89999999999


Q ss_pred             cEEEcC--CCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDE--NWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~--~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.  ++.++++|||.+..                 +|+......++.++|+||+||++|+|+++..|+...
T Consensus       132 NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  206 (321)
T 1tki_A          132 NIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             GEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC
Confidence            999987  78899999997643                 222233445688999999999999999988877543

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.97  E-value=3.1e-31  Score=184.13  Aligned_cols=131  Identities=12%  Similarity=0.052  Sum_probs=113.0

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC---CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN---HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      ...|+||+++++++..++..++||||+++|+|.+++...   ....+++..+..++.|++.|+.|||+   .+++|||||
T Consensus       123 ~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~---~~ivHrDiK  199 (365)
T 3e7e_A          123 PSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHD---CEIIHGDIK  199 (365)
T ss_dssp             GGGGGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCS
T ss_pred             hhhhhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeecCCCC
Confidence            345999999999999999999999999999999998532   34578999999999999999999998   899999999


Q ss_pred             CCcEEEcC-----------CCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhccc
Q 041845           80 STNILLDE-----------NWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        80 ~~nil~~~-----------~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      |+||+++.           ++.+|++|||.+..                    +|+.+....++.++|||||||++|||+
T Consensus       200 p~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  279 (365)
T 3e7e_A          200 PDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCML  279 (365)
T ss_dssp             GGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHH
T ss_pred             HHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHH
Confidence            99999998           89999999998732                    223344556889999999999999999


Q ss_pred             cccCCCCc
Q 041845          129 MLPMAENE  136 (143)
Q Consensus       129 ~~~~~~~~  136 (143)
                      ++..|+..
T Consensus       280 tg~~pf~~  287 (365)
T 3e7e_A          280 FGTYMKVK  287 (365)
T ss_dssp             HSSCCCEE
T ss_pred             hCCCcccc
Confidence            98877653

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.97  E-value=3e-31  Score=186.03  Aligned_cols=126  Identities=21%  Similarity=0.188  Sum_probs=112.8

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++.+++||||+++|+|...+...  ..+++..+..++.|++.|+.|||+   .+++||||||+||+
T Consensus       111 ~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~---~givHrDLKp~NIL  185 (396)
T 4dc2_A          111 NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVL  185 (396)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEE
T ss_pred             CCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEE
Confidence            7999999999999999999999999999999988653  368899999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ++.++.+|++|||.+..                  +|+.+....++.++|+||+||++|||+++..|+.
T Consensus       186 l~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~  254 (396)
T 4dc2_A          186 LDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFD  254 (396)
T ss_dssp             ECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred             ECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCc
Confidence            99999999999997642                  2333455678899999999999999999988885

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.97  E-value=1.7e-31  Score=183.07  Aligned_cols=132  Identities=25%  Similarity=0.349  Sum_probs=113.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus       104 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp  179 (325)
T 3kul_A          104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAA  179 (325)
T ss_dssp             HTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSG
T ss_pred             HHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCc
Confidence            46789999999999999999999999999999999999543 3578899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                     |+......++.++||||||+++|+|++ +..|+..
T Consensus       180 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~  257 (325)
T 3kul_A          180 RNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWN  257 (325)
T ss_dssp             GGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCccc
Confidence            9999999999999999976432                     222223466788999999999999998 7777653

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.97  E-value=3.8e-31  Score=182.69  Aligned_cols=128  Identities=23%  Similarity=0.267  Sum_probs=112.8

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++.+++||||+++|+|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||||+||+
T Consensus        76 ~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIl  150 (345)
T 1xjd_A           76 EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNIL  150 (345)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEE
T ss_pred             CCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCChhhEE
Confidence            8999999999999999999999999999999998653  368889999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.+|++|||.+..                  +|+......++.++|+||+||++|||+++..|+...
T Consensus       151 l~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (345)
T 1xjd_A          151 LDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  221 (345)
T ss_dssp             ECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999997642                  222234556889999999999999999988887643

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=185.89  Aligned_cols=128  Identities=19%  Similarity=0.165  Sum_probs=112.0

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++.+++||||+++++|...+...  ..+++..+..++.|++.|+.|||+   .+++||||||+||+
T Consensus        82 ~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIL  156 (353)
T 3txo_A           82 NHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHD---KGIIYRDLKLDNVL  156 (353)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEE
T ss_pred             CCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCCHHHEE
Confidence            6999999999999999999999999999999998654  368899999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.+|++|||.+..                  +|+.+....++.++|+||+||++|||+++..|+...
T Consensus       157 l~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  227 (353)
T 3txo_A          157 LDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE  227 (353)
T ss_dssp             ECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC
Confidence            99999999999997642                  122222345788999999999999999988887654

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=2.8e-31  Score=192.99  Aligned_cols=133  Identities=22%  Similarity=0.223  Sum_probs=116.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++.+++||||+++|+|.+.+.......+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus       239 ~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~---~gIvHrDLKPe  315 (576)
T 2acx_A          239 EKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHR---ERIVYRDLKPE  315 (576)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGG
T ss_pred             HHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEeccCCchh
Confidence            457899999999999999999999999999999999876555568999999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+...                 |+.+....++.++|+||+||++|||+++..|+...
T Consensus       316 NILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~  388 (576)
T 2acx_A          316 NILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQR  388 (576)
T ss_dssp             GEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCS
T ss_pred             eEEEeCCCCeEEEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCccc
Confidence            999999999999999976432                 22234456789999999999999999988887654

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.97  E-value=2.1e-31  Score=183.96  Aligned_cols=127  Identities=21%  Similarity=0.179  Sum_probs=112.3

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++.+++||||+++++|.+++.+.  ..+++..+..++.|++.|+.|||+   .+++||||||+||+
T Consensus        68 ~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~---~~ivHrDlkp~NIl  142 (345)
T 3a8x_A           68 NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHE---RGIIYRDLKLDNVL  142 (345)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEE
T ss_pred             CCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHHHEE
Confidence            8999999999999999999999999999999998653  368899999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ++.++.+|++|||.+..                  +|+.+....++.++|+||+||++|||+++..|+..
T Consensus       143 l~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  212 (345)
T 3a8x_A          143 LDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  212 (345)
T ss_dssp             ECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCC
Confidence            99999999999997642                  22223455778999999999999999998888753

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.97  E-value=4.7e-31  Score=182.72  Aligned_cols=128  Identities=20%  Similarity=0.176  Sum_probs=112.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+.+.+++||||+++|+|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||||+||+
T Consensus        79 ~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~givHrDlkp~NIl  153 (353)
T 2i0e_A           79 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVM  153 (353)
T ss_dssp             CCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEE
T ss_pred             CCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCEEeccCCHHHEE
Confidence            7999999999999999999999999999999998653  368899999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.+|++|||.+..                  +|+.+....++.++|+||+||++|||+++..|+...
T Consensus       154 l~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  224 (353)
T 2i0e_A          154 LDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  224 (353)
T ss_dssp             ECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             EcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence            99999999999997642                  223334567889999999999999999988887643

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.96  E-value=2.6e-31  Score=182.25  Aligned_cols=131  Identities=18%  Similarity=0.146  Sum_probs=113.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        76 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~  150 (327)
T 3a62_A           76 EEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLHQ---KGIIYRDLKPE  150 (327)
T ss_dssp             HHCCCTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCTT
T ss_pred             HhCCCCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHh---CCEEcccCCHH
Confidence            4578999999999999999999999999999999998543  367888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+..                  +|+......++.++|+||+||++|+|+++..|+...
T Consensus       151 Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  224 (327)
T 3a62_A          151 NIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE  224 (327)
T ss_dssp             TEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC
Confidence            99999999999999997542                  222234556788999999999999999988887643

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.96  E-value=1.1e-31  Score=187.26  Aligned_cols=132  Identities=26%  Similarity=0.316  Sum_probs=112.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus       166 l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp  241 (377)
T 3cbl_A          166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGMEYLES---KCCIHRDLAA  241 (377)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSG
T ss_pred             HHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCcCCcccCH
Confidence            46789999999999999999999999999999999998643 2357888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.+|++|||.+...                    |+.+....++.++|+|||||++|||++ +..|+..
T Consensus       242 ~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~  318 (377)
T 3cbl_A          242 RNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPN  318 (377)
T ss_dssp             GGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             HHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999976421                    122223456788999999999999998 6666653

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.96  E-value=4.4e-31  Score=184.02  Aligned_cols=132  Identities=27%  Similarity=0.375  Sum_probs=109.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus       100 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp  175 (373)
T 2qol_A          100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAA  175 (373)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeCCCCCc
Confidence            46789999999999999999999999999999999999543 3468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.+|++|||.+...                     |+......++.++||||||+++||+++ +..|+..
T Consensus       176 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~  253 (373)
T 2qol_A          176 RNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWE  253 (373)
T ss_dssp             GGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTT
T ss_pred             ceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999976432                     222233567889999999999999887 7777643

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.96  E-value=4.5e-31  Score=187.53  Aligned_cols=131  Identities=15%  Similarity=0.109  Sum_probs=113.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        65 ~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH~---~givHrDlKp~  139 (444)
T 3soa_A           65 RLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCHQ---MGVVHRNLKPE  139 (444)
T ss_dssp             HHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSST
T ss_pred             HhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHH
Confidence            4679999999999999999999999999999999988654  368899999999999999999998   89999999999


Q ss_pred             cEEEcC---CCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDE---NWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~---~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.   ++.+|++|||.+..                  +|+.+....++.++||||+||++|+|+++..|+...
T Consensus       140 NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~  216 (444)
T 3soa_A          140 NLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE  216 (444)
T ss_dssp             TEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence            999984   57899999997642                  223334457889999999999999999988777543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.7e-31  Score=188.08  Aligned_cols=132  Identities=17%  Similarity=0.104  Sum_probs=113.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++.+++||||+++|+|.+++.+. ...+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus       116 ~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~LH~---~giiHrDLKp~  191 (412)
T 2vd5_A          116 VNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKF-GERIPAEMARFYLAEIVMAIDSVHR---LGYVHRDIKPD  191 (412)
T ss_dssp             HHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccCHH
Confidence            3568999999999999999999999999999999999643 2368899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccC-------CCCCCCcccchhhhhhhhccccccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRIL-------PAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~-------~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+++.++.+|++|||.+...                   |+.+.       ...++.++|+|||||++|||+++..|+.
T Consensus       192 NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~  271 (412)
T 2vd5_A          192 NILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFY  271 (412)
T ss_dssp             GEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             HeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCC
Confidence            999999999999999976422                   11111       2457889999999999999999988876


Q ss_pred             cc
Q 041845          136 EQ  137 (143)
Q Consensus       136 ~~  137 (143)
                      ..
T Consensus       272 ~~  273 (412)
T 2vd5_A          272 AD  273 (412)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.96  E-value=4e-31  Score=188.13  Aligned_cols=133  Identities=32%  Similarity=0.427  Sum_probs=113.7

Q ss_pred             CCCCCCCCcceeeEEeecCC-chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~-~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |++++||||+++++++.+.. ..++||||+++|+|.+++.......++...+..++.|++.|+.|||+   .+++||||+
T Consensus       240 l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlk  316 (450)
T 1k9a_A          240 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLA  316 (450)
T ss_dssp             HHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCC
T ss_pred             HHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCC
Confidence            35789999999999987655 78999999999999999976554457889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      |+||+++.++.+|++|||.+..               +|+.+....++.++|+|||||++|||++ +..|+..
T Consensus       317 p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~  389 (450)
T 1k9a_A          317 ARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  389 (450)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             HhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999997642               2333345677889999999999999998 7766654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.96  E-value=6e-31  Score=182.71  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=111.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        83 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~---~~ivH~Dlkp~  157 (362)
T 2bdw_A           83 RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPE  157 (362)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGG
T ss_pred             HhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchH
Confidence            4579999999999999999999999999999999988543  467899999999999999999998   89999999999


Q ss_pred             cEEEcCCC---cccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENW---VAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~---~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++   .+|++|||.+..                 +|+.+....++.++|+||+||++|+|+++..|+..
T Consensus       158 NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~  232 (362)
T 2bdw_A          158 NLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD  232 (362)
T ss_dssp             GEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            99998654   589999997642                 22333445688999999999999999998877754

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.96  E-value=8.1e-31  Score=184.15  Aligned_cols=130  Identities=21%  Similarity=0.278  Sum_probs=111.3

Q ss_pred             CCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            4 LRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         4 l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      .+||||+++++++..    ...+++||||+++|+|.+++.......+++..+..++.|++.|+.|||+   .+++|||||
T Consensus       112 ~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlk  188 (400)
T 1nxk_A          112 SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVK  188 (400)
T ss_dssp             TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCC
T ss_pred             cCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCcC
Confidence            479999999999865    5678999999999999999976555578999999999999999999998   899999999


Q ss_pred             CCcEEEcC---CCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDE---NWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~---~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||+++.   ++.+|++|||.+.                 .+|+.+....++.++|||||||++|+|+++..|+..
T Consensus       189 p~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  265 (400)
T 1nxk_A          189 PENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS  265 (400)
T ss_dssp             GGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             cceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCC
Confidence            99999997   6889999999764                 234444566789999999999999999998877754

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.96  E-value=5.4e-31  Score=187.22  Aligned_cols=133  Identities=20%  Similarity=0.179  Sum_probs=115.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+.+.+++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+  ..+++||||||
T Consensus       202 l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~--~~giiHrDlkp  277 (446)
T 4ejn_A          202 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKL  277 (446)
T ss_dssp             CCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCCCG
T ss_pred             HHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhh--cCCEEECCCCH
Confidence            56789999999999999999999999999999999988553  368889999999999999999994  26899999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+..                  +|+.+....++.++|+|||||++|||+++..|+...
T Consensus       278 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  352 (446)
T 4ejn_A          278 ENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  352 (446)
T ss_dssp             GGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence            999999999999999997642                  222334567889999999999999999988887643

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.96  E-value=2e-31  Score=191.61  Aligned_cols=132  Identities=25%  Similarity=0.349  Sum_probs=113.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+....++||||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus       271 ~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~  347 (495)
T 1opk_A          271 KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAAR  347 (495)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCChh
Confidence            467999999999999999999999999999999999976655678899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccc-------------------cccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLG-------------------SRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+....                   +.+....++.++|||||||++|||++ +..|+..
T Consensus       348 NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~  422 (495)
T 1opk_A          348 NCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG  422 (495)
T ss_dssp             GEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             hEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999765321                   11223456788999999999999998 6666543

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.96  E-value=8.1e-31  Score=189.79  Aligned_cols=133  Identities=24%  Similarity=0.273  Sum_probs=115.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++.++..+++||||+++++|.+.+....  ...+++..+..++.|++.|+.|||+   .+++|||||
T Consensus       240 ~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~---~gIvHrDLK  316 (543)
T 3c4z_A          240 AKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQ---RNIIYRDLK  316 (543)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCC
T ss_pred             HhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH---cCCcccCCC
Confidence            45789999999999999999999999999999999886543  3468899999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           80 STNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |+||+++.++.+|++|||.+..                  +|+.+....++.++|+||+||++|||+++..|+...
T Consensus       317 P~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~  392 (543)
T 3c4z_A          317 PENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR  392 (543)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred             hHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence            9999999999999999997642                  222234456889999999999999999988887653

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.96  E-value=3.6e-31  Score=180.31  Aligned_cols=133  Identities=31%  Similarity=0.458  Sum_probs=112.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-CCCcHHHHHHHHHHHHHHHhHhhcCCCCC--eeecCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-PPLQWMWRLKICIGAARGLHYLHTGTRNT--IIHRDV   78 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~~l   78 (143)
                      ++++||||+++++++.+++..++||||+++++|.+++..... ..+++..+..++.|++.|+.|||+   .+  ++||||
T Consensus        89 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~~~ivH~Di  165 (309)
T 3p86_A           89 KRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN---RNPPIVHRNL  165 (309)
T ss_dssp             HHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHT---SSSCCCCTTC
T ss_pred             HhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCCEECCCC
Confidence            467899999999999999999999999999999999964321 237888999999999999999997   78  999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|+||+++.++.+|++|||.+..                  +|+......++.++|+||+||++|+|+++..|+...
T Consensus       166 kp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~  242 (309)
T 3p86_A          166 KSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL  242 (309)
T ss_dssp             CGGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred             ChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999997642                  233344556789999999999999999988887643

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.96  E-value=8.1e-31  Score=179.71  Aligned_cols=130  Identities=21%  Similarity=0.191  Sum_probs=113.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.++...++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        69 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~  143 (326)
T 2y0a_A           69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPE  143 (326)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGG
T ss_pred             HhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHH---CCeEcCCCCHH
Confidence            4578999999999999999999999999999999999543  478899999999999999999998   89999999999


Q ss_pred             cEEEcCCC----cccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENW----VAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~----~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++    .+|++|||.+...                 |+......++.++|+||+||++|+|+++..|+..
T Consensus       144 NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  219 (326)
T 2y0a_A          144 NIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  219 (326)
T ss_dssp             GEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCC
Confidence            99998877    7899999976432                 2223345678899999999999999998887754

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.96  E-value=1e-30  Score=178.66  Aligned_cols=133  Identities=53%  Similarity=0.753  Sum_probs=113.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++++.+++..++||||+++++|.+++....  ...+++..+..++.|++.|+.|||+   .+++|+|+
T Consensus        89 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~ivH~dl  165 (321)
T 2qkw_B           89 LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHT---RAIIHRDV  165 (321)
T ss_dssp             GGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             HHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcC---CCeecCCC
Confidence            467899999999999999999999999999999999885442  2357889999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++.+|++|||.+...                    |+......++.++|+||||+++|+|+++..|+..
T Consensus       166 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~  243 (321)
T 2qkw_B          166 KSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQ  243 (321)
T ss_dssp             CSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSC
T ss_pred             CHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccc
Confidence            999999999999999999976431                    1222345678899999999999999998776653

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.96  E-value=1.3e-30  Score=182.50  Aligned_cols=133  Identities=19%  Similarity=0.208  Sum_probs=114.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.++...++||||+++++|.+.+... ...+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus       102 l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDlkp  177 (387)
T 1kob_A          102 MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKP  177 (387)
T ss_dssp             HTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCG
T ss_pred             HHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeecccch
Confidence            46789999999999999999999999999999999998543 3468899999999999999999998   8999999999


Q ss_pred             CcEEEcC--CCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDE--NWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~--~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.  .+.+|++|||.+..                 +|+......++.++|+||+||++|+|+++..|+...
T Consensus       178 ~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  253 (387)
T 1kob_A          178 ENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  253 (387)
T ss_dssp             GGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             HHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC
Confidence            9999974  46799999997643                 233344566788999999999999999988887643

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.96  E-value=4.9e-31  Score=179.38  Aligned_cols=133  Identities=26%  Similarity=0.337  Sum_probs=112.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC----------------------CCCcHHHHHHHHHHH
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK----------------------PPLQWMWRLKICIGA   58 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~----------------------~~~~~~~~~~~~~~i   58 (143)
                      |+.++||||+++++++.+++..+++|||+++++|.+++.....                      ..+++..+..++.|+
T Consensus        80 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  159 (314)
T 2ivs_A           80 LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQI  159 (314)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHH
T ss_pred             HhhCCCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999965432                      237788999999999


Q ss_pred             HHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccch
Q 041845           59 ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVY  118 (143)
Q Consensus        59 ~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~  118 (143)
                      +.|+.|||+   .+++|+||+|+||+++.++.++++|||.+...                    |+......++.++|+|
T Consensus       160 ~~~l~~lH~---~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  236 (314)
T 2ivs_A          160 SQGMQYLAE---MKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVW  236 (314)
T ss_dssp             HHHHHHHHH---TTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHH
T ss_pred             HHHHHHHHH---CCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHH
Confidence            999999998   89999999999999999999999999976432                    1112234467889999


Q ss_pred             hhhhhhhcccc-ccCCCCc
Q 041845          119 SFGVLCARPAM-LPMAENE  136 (143)
Q Consensus       119 s~G~~~~~~~~-~~~~~~~  136 (143)
                      |+|+++|+|++ +..|+..
T Consensus       237 slG~il~el~t~g~~p~~~  255 (314)
T 2ivs_A          237 SFGVLLWEIVTLGGNPYPG  255 (314)
T ss_dssp             HHHHHHHHHHTTSCCSSTT
T ss_pred             HHHHHHHHHHhCCCCCCCC
Confidence            99999999998 7766654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=5.6e-31  Score=175.90  Aligned_cols=132  Identities=30%  Similarity=0.422  Sum_probs=113.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        60 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~  135 (269)
T 4hcu_A           60 MKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAAR  135 (269)
T ss_dssp             HTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGG
T ss_pred             HhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhc-CcccCHHHHHHHHHHHHHHHHHHHh---CCeecCCcchh
Confidence            5689999999999999999999999999999999999543 3468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                   |+......++.++|+||+|+++|+|++ +..|+...
T Consensus       136 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~  211 (269)
T 4hcu_A          136 NCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  211 (269)
T ss_dssp             GEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             eEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC
Confidence            999999999999999976422                   222333567889999999999999999 77777543

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.96  E-value=7.2e-31  Score=180.72  Aligned_cols=131  Identities=21%  Similarity=0.277  Sum_probs=111.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..++||||+ +|++.+.+...  ..+++..+..++.|++.|+.|||+   .+++|||++|
T Consensus        63 l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp  136 (336)
T 3h4j_B           63 LKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHR---HKIVHRDLKP  136 (336)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCST
T ss_pred             HHhCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCch
Confidence            46789999999999999999999999999 57998888554  368899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------cccccCCCCC-CCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+..                 +|+.+....+ +.++|+||+||++|+|+++..|+...
T Consensus       137 ~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  211 (336)
T 3h4j_B          137 ENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDE  211 (336)
T ss_dssp             TTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCS
T ss_pred             hhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCc
Confidence            999999999999999997642                 2222233333 57899999999999999998887654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.96  E-value=2e-30  Score=177.44  Aligned_cols=130  Identities=21%  Similarity=0.271  Sum_probs=113.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..+++|||+++++|.+++..   ..+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        96 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp  169 (321)
T 2c30_A           96 MRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHA---QGVIHRDIKS  169 (321)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            4678999999999999999999999999999999998843   368899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                  |+......++.++|+||||+++|+|+++..|+..
T Consensus       170 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~  243 (321)
T 2c30_A          170 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFS  243 (321)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999975422                  2223345678899999999999999998877754

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.96  E-value=8.3e-31  Score=181.28  Aligned_cols=132  Identities=20%  Similarity=0.167  Sum_probs=111.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++.+++..++||||+++++|.+.+...  ....+++..+..++.|++.|+.|||+   .+++|||||
T Consensus        81 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivHrDlk  157 (351)
T 3c0i_A           81 HMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHD---NNIIHRDVK  157 (351)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCS
T ss_pred             HhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCC
Confidence            4578999999999999999999999999999998877533  23457889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCc---ccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWV---AKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~---~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||+++.++.   +|++|||.+...                  |+.+....++.++|+||+||++|+|+++..|+..
T Consensus       158 p~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  235 (351)
T 3c0i_A          158 PHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG  235 (351)
T ss_dssp             GGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred             hHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCC
Confidence            99999986654   899999876432                  2223345678999999999999999998877754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.9e-31  Score=183.92  Aligned_cols=132  Identities=28%  Similarity=0.334  Sum_probs=111.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-----CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-----KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++||||+++++++.++...++||||+++++|.+++....     ...+++..++.++.|++.|+.|||+   .+++||
T Consensus       129 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHr  205 (367)
T 3l9p_A          129 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHR  205 (367)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCS
T ss_pred             HhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHh---CCeeCC
Confidence            45799999999999999999999999999999999986432     2457888999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCC---cccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccC
Q 041845           77 DVKSTNILLDENW---VAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPM  132 (143)
Q Consensus        77 ~l~~~nil~~~~~---~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~  132 (143)
                      ||||+||+++.++   .+|++|||.+..                    +|+.+....++.++|||||||++|||++ +..
T Consensus       206 Dlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~  285 (367)
T 3l9p_A          206 DIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYM  285 (367)
T ss_dssp             CCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            9999999998544   599999998742                    2222335567889999999999999998 766


Q ss_pred             CCCc
Q 041845          133 AENE  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      |+..
T Consensus       286 pf~~  289 (367)
T 3l9p_A          286 PYPS  289 (367)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            6654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.96  E-value=4.4e-31  Score=188.07  Aligned_cols=132  Identities=25%  Similarity=0.364  Sum_probs=112.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++. ....++||||+++|+|.+++.......+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus       237 l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivHrDlkp  312 (454)
T 1qcf_A          237 MKTLQHDKLVKLHAVVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRA  312 (454)
T ss_dssp             HTTCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSG
T ss_pred             HhhCCCCCEeeEEEEEe-CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCH
Confidence            46789999999999986 6678999999999999999965433467788899999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc-------------------cccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLLG-------------------SRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.+|++|||.+....                   +.+....++.++|||||||++|||++ +..|+..
T Consensus       313 ~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~  388 (454)
T 1qcf_A          313 ANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPG  388 (454)
T ss_dssp             GGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             HHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999875321                   22223567889999999999999998 7777654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.96  E-value=6.8e-31  Score=178.89  Aligned_cols=132  Identities=23%  Similarity=0.273  Sum_probs=111.7

Q ss_pred             CCCCCCCCcceeeEEeecCCch----hhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            1 LSNLRHRHLVSLIGHHVENKEM----ILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~----~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      ++.++||||+++++++......    ++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+
T Consensus        66 l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~  140 (311)
T 3ork_A           66 AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQ---NGIIHR  140 (311)
T ss_dssp             CCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCC
T ss_pred             HHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcC
Confidence            4678999999999998765543    9999999999999998644  368889999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||+|+||+++.++.+|++|||.+..                     +|+......++.++|+||+|+++|+|+++..|+.
T Consensus       141 dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~  220 (311)
T 3ork_A          141 DVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT  220 (311)
T ss_dssp             CCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999999997642                     2222334567889999999999999999888876


Q ss_pred             cc
Q 041845          136 EQ  137 (143)
Q Consensus       136 ~~  137 (143)
                      ..
T Consensus       221 ~~  222 (311)
T 3ork_A          221 GD  222 (311)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.96  E-value=7.1e-31  Score=180.58  Aligned_cols=132  Identities=28%  Similarity=0.385  Sum_probs=112.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC----------------------CCCCcHHHHHHHHHHHH
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH----------------------KPPLQWMWRLKICIGAA   59 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~i~   59 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++....                      ...+++..+..++.|++
T Consensus       105 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~  184 (343)
T 1luf_A          105 AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVA  184 (343)
T ss_dssp             HTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHH
T ss_pred             HhCCCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999986532                      14678899999999999


Q ss_pred             HHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchh
Q 041845           60 RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYS  119 (143)
Q Consensus        60 ~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s  119 (143)
                      .|+.|||+   .+++|+||+|+||+++.++.++++|||.+...                    |+......++.++|+||
T Consensus       185 ~~l~~LH~---~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s  261 (343)
T 1luf_A          185 AGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWA  261 (343)
T ss_dssp             HHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHH
T ss_pred             HHHHHHHh---CCeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHH
Confidence            99999998   89999999999999999999999999976421                    22223356788999999


Q ss_pred             hhhhhhcccc-ccCCCCc
Q 041845          120 FGVLCARPAM-LPMAENE  136 (143)
Q Consensus       120 ~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++|+|++ +..|+..
T Consensus       262 lG~il~el~t~g~~p~~~  279 (343)
T 1luf_A          262 YGVVLWEIFSYGLQPYYG  279 (343)
T ss_dssp             HHHHHHHHHTTTCCTTTT
T ss_pred             HHHHHHHHHhcCCCcCCC
Confidence            9999999998 7666653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.96  E-value=1e-30  Score=178.92  Aligned_cols=130  Identities=27%  Similarity=0.381  Sum_probs=108.4

Q ss_pred             CCCCCCCCcceeeEEeecCCc----hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-----
Q 041845            1 LSNLRHRHLVSLIGHHVENKE----MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRN-----   71 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~----~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-----   71 (143)
                      |+.++||||+++++++.++..    +++||||+++++|.+++...   .+++..+..++.|++.|+.|||+   .     
T Consensus        72 l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~---~~~~l~  145 (322)
T 3soc_A           72 LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHE---DIPGLK  145 (322)
T ss_dssp             STTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTC---CEEEET
T ss_pred             HhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHh---hccccc
Confidence            567899999999999987543    69999999999999999653   58899999999999999999997   7     


Q ss_pred             -----CeeecCCCCCcEEEcCCCcccccccchhhccc--------------------cccCC-----CCCCCcccchhhh
Q 041845           72 -----TIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------------------SRILP-----AKLTEKSDVYSFG  121 (143)
Q Consensus        72 -----~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~--------------------~~~~~-----~~~~~~~Di~s~G  121 (143)
                           +++|+||||+||+++.++.+|++|||.+....                    +.+..     ..++.++||||||
T Consensus       146 ~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG  225 (322)
T 3soc_A          146 DGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMG  225 (322)
T ss_dssp             TEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred             cccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHH
Confidence                 99999999999999999999999999874321                    11111     1334567999999


Q ss_pred             hhhhccccccCCCCc
Q 041845          122 VLCARPAMLPMAENE  136 (143)
Q Consensus       122 ~~~~~~~~~~~~~~~  136 (143)
                      |++|||+++..|+..
T Consensus       226 ~il~el~tg~~pf~~  240 (322)
T 3soc_A          226 LVLWELASRCTAADG  240 (322)
T ss_dssp             HHHHHHHTTBTTSSS
T ss_pred             HHHHHHHhCCCCCCC
Confidence            999999998777653

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.96  E-value=1.6e-30  Score=185.93  Aligned_cols=132  Identities=22%  Similarity=0.309  Sum_probs=113.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus        70 l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDLkp  144 (476)
T 2y94_A           70 LKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHR---HMVVHRDLKP  144 (476)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCSG
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCCcccccH
Confidence            46789999999999999999999999999999999999543  468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc-----------------cccCCCCC-CCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLLG-----------------SRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~-----------------~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+....                 +.+....+ +.++|+||+||++|+|+++..|+...
T Consensus       145 ~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  219 (476)
T 2y94_A          145 ENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD  219 (476)
T ss_dssp             GGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHEEEecCCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC
Confidence            99999999999999999765322                 11222333 57899999999999999988887654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=9.6e-31  Score=180.13  Aligned_cols=132  Identities=23%  Similarity=0.305  Sum_probs=111.8

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC---------------------CCCcHHHHHHHHHHHHH
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK---------------------PPLQWMWRLKICIGAAR   60 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~i~~   60 (143)
                      ++ +||||+++++++..++..+++|||+++++|.+++.....                     ..+++..+..++.|++.
T Consensus       104 ~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~  183 (344)
T 1rjb_A          104 QLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAK  183 (344)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHH
T ss_pred             hhcCCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHH
Confidence            45 899999999999999999999999999999999965432                     23688889999999999


Q ss_pred             HHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhh
Q 041845           61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSF  120 (143)
Q Consensus        61 ~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~  120 (143)
                      |+.|||+   .+++|+||+|+||+++.++.++++|||.+...                    |+......++.++|+|||
T Consensus       184 aL~~LH~---~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~sl  260 (344)
T 1rjb_A          184 GMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSY  260 (344)
T ss_dssp             HHHHHHH---TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHh---CCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHH
Confidence            9999998   89999999999999999999999999986421                    222334567889999999


Q ss_pred             hhhhhcccc-ccCCCCcc
Q 041845          121 GVLCARPAM-LPMAENEQ  137 (143)
Q Consensus       121 G~~~~~~~~-~~~~~~~~  137 (143)
                      |+++|+|++ +..|+...
T Consensus       261 G~il~el~t~g~~p~~~~  278 (344)
T 1rjb_A          261 GILLWEIFSLGVNPYPGI  278 (344)
T ss_dssp             HHHHHHHTTTSCCSSTTC
T ss_pred             HHHHHHHHcCCCCCcccC
Confidence            999999998 77776543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.7e-30  Score=181.07  Aligned_cols=131  Identities=25%  Similarity=0.370  Sum_probs=106.7

Q ss_pred             CCCCCCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |++++||||+++++++.+ ++..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||+
T Consensus       144 l~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlk  219 (373)
T 3c1x_A          144 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLA  219 (373)
T ss_dssp             STTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCC
T ss_pred             HHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCccc
Confidence            567899999999998754 56788999999999999999543 3467888899999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc----------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLRLL----------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      |+||+++.++.+|++|||.+...                      |+......++.++|+|||||++|||++ +..|+.
T Consensus       220 p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~  298 (373)
T 3c1x_A          220 ARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  298 (373)
T ss_dssp             GGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCT
T ss_pred             hheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence            99999999999999999976421                      222234567889999999999999999 455554

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.96  E-value=4.1e-31  Score=181.03  Aligned_cols=130  Identities=24%  Similarity=0.272  Sum_probs=111.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        60 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~givH~Dlkp~  134 (323)
T 3tki_A           60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPE  134 (323)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccccchH
Confidence            4578999999999999999999999999999999988433  468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------------ccccCCCCC-CCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------------GSRILPAKL-TEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                    |+.+....+ +.++|+||+||++|+|+++..|+..
T Consensus       135 NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  210 (323)
T 3tki_A          135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ  210 (323)
T ss_dssp             GEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSS
T ss_pred             HEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999977432                    111222233 5689999999999999998888764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.96  E-value=7.3e-31  Score=179.57  Aligned_cols=132  Identities=39%  Similarity=0.600  Sum_probs=113.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--CCCCcHHHHHHHHHHHHHHHhHhhcCCCC---Ceee
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIGAARGLHYLHTGTRN---TIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh~~~~~---~i~h   75 (143)
                      |+.++||||+++++++.+++..+++|||+++++|.+++....  ...+++..+..++.|++.|+.|||+   .   +++|
T Consensus        81 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~ivH  157 (326)
T 3uim_A           81 ISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHD---HCDPKIIH  157 (326)
T ss_dssp             GGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHH---SSSSCEEC
T ss_pred             HHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCeEe
Confidence            457899999999999999999999999999999999996543  2348889999999999999999998   6   9999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhccc-------------------cccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLLG-------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +||+|+||+++.++.++++|||.+....                   +......++.++|+||+|+++|+|+++..|+.
T Consensus       158 ~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  236 (326)
T 3uim_A          158 RDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFD  236 (326)
T ss_dssp             CCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBC
T ss_pred             CCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccc
Confidence            9999999999999999999999875321                   11223456788999999999999999887775

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.96  E-value=2.7e-30  Score=172.34  Aligned_cols=133  Identities=20%  Similarity=0.261  Sum_probs=110.7

Q ss_pred             CCCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC--eeec
Q 041845            1 LSNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT--IIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~   76 (143)
                      |++++||||+++++++.++  +..+++|||+++++|.+++.......+++..+..++.|++.|+.|||+   .+  ++|+
T Consensus        61 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~~i~H~  137 (271)
T 3kmu_A           61 LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT---LEPLIPRH  137 (271)
T ss_dssp             GCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTT---SSSCCTTC
T ss_pred             HHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhc---CCCceecC
Confidence            4678999999999999876  778999999999999999976655568999999999999999999997   77  9999


Q ss_pred             CCCCCcEEEcCCCcccccccchhh-------------ccccccCCCCCCC---cccchhhhhhhhccccccCCCCc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLR-------------LLGSRILPAKLTE---KSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~-------------~~~~~~~~~~~~~---~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |++|+||+++.++..++.+++...             .+|+......++.   ++|+||+|+++|+|+++..|+..
T Consensus       138 dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  213 (271)
T 3kmu_A          138 ALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFAD  213 (271)
T ss_dssp             CCSGGGEEECTTSCEEEEGGGSCCTTSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTT
T ss_pred             CCccceEEEcCCcceeEEeccceeeecccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            999999999999988888776542             1222233333333   79999999999999998888764

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.96  E-value=8.8e-31  Score=182.93  Aligned_cols=131  Identities=24%  Similarity=0.353  Sum_probs=112.8

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      .+ +||||+++++++.+++..++||||+++++|.+++....              ...+++..+..++.|++.|+.|||+
T Consensus       130 ~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  209 (382)
T 3tt0_A          130 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS  209 (382)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh
Confidence            45 89999999999999999999999999999999996543              2358899999999999999999998


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~  127 (143)
                         .+++||||||+||+++.++.+|++|||.+..                    +|+......++.++|||||||++|+|
T Consensus       210 ---~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el  286 (382)
T 3tt0_A          210 ---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI  286 (382)
T ss_dssp             ---TTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred             ---CCEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHH
Confidence               8999999999999999999999999997642                    22223345678899999999999999


Q ss_pred             cc-ccCCCCc
Q 041845          128 AM-LPMAENE  136 (143)
Q Consensus       128 ~~-~~~~~~~  136 (143)
                      ++ +..|+..
T Consensus       287 lt~g~~p~~~  296 (382)
T 3tt0_A          287 FTLGGSPYPG  296 (382)
T ss_dssp             HTTSCCSSTT
T ss_pred             HhCCCCCCCC
Confidence            98 7777654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.96  E-value=7.6e-31  Score=182.15  Aligned_cols=130  Identities=13%  Similarity=0.108  Sum_probs=111.0

Q ss_pred             CCCCCCCcceeeEEeecC----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            2 SNLRHRHLVSLIGHHVEN----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      +.++||||+++++++...    ...++||||+ +++|.+++... ...+++..+..++.|++.|+.|||+   .+++|||
T Consensus       103 ~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~---~~iiHrD  177 (364)
T 3op5_A          103 RKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIHE---HEYVHGD  177 (364)
T ss_dssp             TTCSCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCC
T ss_pred             hhccCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCeEEec
Confidence            467899999999998764    4589999999 88999998653 3578999999999999999999998   8999999


Q ss_pred             CCCCcEEEc--CCCcccccccchhhcc-------------------------ccccCCCCCCCcccchhhhhhhhccccc
Q 041845           78 VKSTNILLD--ENWVAKHSRERQLRLL-------------------------GSRILPAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        78 l~~~nil~~--~~~~~k~~~~~~~~~~-------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      |||+||+++  .++.+|++|||.+...                         |+......++.++|||||||++|+|+++
T Consensus       178 lkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g  257 (364)
T 3op5_A          178 IKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTG  257 (364)
T ss_dssp             CCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhC
Confidence            999999999  8899999999987421                         2223344578899999999999999999


Q ss_pred             cCCCCc
Q 041845          131 PMAENE  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      ..|+..
T Consensus       258 ~~Pf~~  263 (364)
T 3op5_A          258 HLPWED  263 (364)
T ss_dssp             CCTTGG
T ss_pred             CCCccc
Confidence            888874

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.96  E-value=1.5e-30  Score=178.34  Aligned_cols=129  Identities=18%  Similarity=0.174  Sum_probs=107.6

Q ss_pred             CCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            3 NLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         3 ~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .++ ||||+++++++.++...++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        61 ~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~  135 (325)
T 3kn6_A           61 LCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHD---VGVVHRDLKPE  135 (325)
T ss_dssp             HTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGG
T ss_pred             HhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCeecCCCHH
Confidence            344 999999999999999999999999999999999654  468899999999999999999998   89999999999


Q ss_pred             cEEEcCCC---cccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENW---VAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~---~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++   .++++|||.+..                  +|+......++.++|+||+||++|+|+++..|+..
T Consensus       136 NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  211 (325)
T 3kn6_A          136 NLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQS  211 (325)
T ss_dssp             GEEEEC----CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-
T ss_pred             HEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence            99998665   799999997642                  23334455678899999999999999998888764

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.96  E-value=4.9e-30  Score=177.64  Aligned_cols=131  Identities=21%  Similarity=0.268  Sum_probs=113.9

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      .+.||||+++++++...+..++|||++ +++|.+++.......+++..+..++.|++.|+.|||+   .+++||||||+|
T Consensus        92 ~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlkp~N  167 (360)
T 3llt_A           92 DINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRK---MSLTHTDLKPEN  167 (360)
T ss_dssp             STTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGG
T ss_pred             CCCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCccc
Confidence            346999999999999999999999999 8899999976655678899999999999999999998   899999999999


Q ss_pred             EEEcC-------------------------CCcccccccchhhc---------------cccccCCCCCCCcccchhhhh
Q 041845           83 ILLDE-------------------------NWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGV  122 (143)
Q Consensus        83 il~~~-------------------------~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~  122 (143)
                      |+++.                         .+.+|++|||.+..               +|+.+....++.++||||+||
T Consensus       168 Ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  247 (360)
T 3llt_A          168 ILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGC  247 (360)
T ss_dssp             EEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHH
T ss_pred             EEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHH
Confidence            99975                         67899999997642               233345667899999999999


Q ss_pred             hhhccccccCCCCcc
Q 041845          123 LCARPAMLPMAENEQ  137 (143)
Q Consensus       123 ~~~~~~~~~~~~~~~  137 (143)
                      ++|+|+++..|+...
T Consensus       248 il~ell~g~~pf~~~  262 (360)
T 3llt_A          248 VLAELYTGSLLFRTH  262 (360)
T ss_dssp             HHHHHHHSSCSCCCS
T ss_pred             HHHHHHHCCCCCCCC
Confidence            999999988887643

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.96  E-value=3.5e-30  Score=173.66  Aligned_cols=131  Identities=21%  Similarity=0.297  Sum_probs=111.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..+++||++++ +|.+.+... ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp  128 (288)
T 1ob3_A           54 LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKP  128 (288)
T ss_dssp             GGGCCCTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhcCCCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            4678999999999999999999999999975 999888543 3468888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.+|++|||.+...                  |+.... ..++.++|+||+||++|+|+++..|+..
T Consensus       129 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  203 (288)
T 1ob3_A          129 QNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPG  203 (288)
T ss_dssp             GGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             HHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999976421                  222222 3578999999999999999998877754

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.96  E-value=2.8e-30  Score=178.55  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=110.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus       103 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~  177 (349)
T 2w4o_A          103 LRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHE---NGIVHRDLKPE  177 (349)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred             HhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEecCCCcc
Confidence            4578999999999999999999999999999999998543  468899999999999999999998   89999999999


Q ss_pred             cEEEcC---CCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDE---NWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~---~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.   ++.+|++|||.+..                 +|+......++.++|+|||||++|+|+++..|+..
T Consensus       178 NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  252 (349)
T 2w4o_A          178 NLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYD  252 (349)
T ss_dssp             GEEESSSSTTCCEEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             cEEEecCCCCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence            999975   78899999997642                 23334455788999999999999999998777653

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.96  E-value=8.5e-31  Score=176.47  Aligned_cols=125  Identities=31%  Similarity=0.352  Sum_probs=108.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+++..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        67 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~  142 (289)
T 4fvq_A           67 SKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAAAMHFLEE---NTLIHGNVCAK  142 (289)
T ss_dssp             HTSCCTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred             HhCCCCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhh---CCeECCCcCcc
Confidence            5689999999999999999999999999999999999654 2347889999999999999999998   89999999999


Q ss_pred             cEEEcCCCc--------ccccccchhh--------------ccccccCC-CCCCCcccchhhhhhhhccccc
Q 041845           82 NILLDENWV--------AKHSRERQLR--------------LLGSRILP-AKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        82 nil~~~~~~--------~k~~~~~~~~--------------~~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      ||+++.++.        ++++|||.+.              .+|+.... ..++.++|+||+|+++|+|+++
T Consensus       143 NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g  214 (289)
T 4fvq_A          143 NILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSG  214 (289)
T ss_dssp             GEEEEECCBGGGTBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEecCCcccccccceeeeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcC
Confidence            999998876        8999998763              22333333 5678899999999999999994

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.96  E-value=2.6e-30  Score=176.18  Aligned_cols=130  Identities=25%  Similarity=0.290  Sum_probs=110.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++ ++.+.+... ...+++..+..++.|++.|+.|||+   .+++|+|+||+
T Consensus        74 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~  148 (311)
T 3niz_A           74 KELHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCHQ---HRILHRDLKPQ  148 (311)
T ss_dssp             HHCCCTTBCCEEEEECCSSCEEEEEECCSE-EHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGG
T ss_pred             HHcCCCCEeeeeeEEccCCEEEEEEcCCCC-CHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCchH
Confidence            467899999999999999999999999985 888887543 3468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+...                  |+.+.. ..++.++|+||+||++|+|+++..|+..
T Consensus       149 NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  222 (311)
T 3niz_A          149 NLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPG  222 (311)
T ss_dssp             GEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             hEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999976432                  222222 4578899999999999999998877754

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.96  E-value=3.3e-30  Score=176.04  Aligned_cols=133  Identities=20%  Similarity=0.265  Sum_probs=111.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC----CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN----HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      |+.++||||+++++++.+++..++||||++ ++|.+++...    ....+++..+..++.|++.|+.|||+   .+++|+
T Consensus        57 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~---~~ivH~  132 (317)
T 2pmi_A           57 MKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHE---NKILHR  132 (317)
T ss_dssp             HTTCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECC
T ss_pred             HHhcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHH---CCeeeC
Confidence            467899999999999999999999999998 5999887532    22457888999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+|+||+++.++.+|++|||.+...                  |+.+.. ..++.++|+||+||++|+|+++..|+...
T Consensus       133 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  212 (317)
T 2pmi_A          133 DLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT  212 (317)
T ss_dssp             CCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999976432                  121222 35788999999999999999988777543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.96  E-value=6.1e-30  Score=176.02  Aligned_cols=132  Identities=20%  Similarity=0.244  Sum_probs=112.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCC-CHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARG-TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |+.++||||+++++++.+++..+++||++..| +|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+
T Consensus        83 l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlk  157 (335)
T 3dls_A           83 LSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRH--PRLDEPLASYIFRQLVSAVGYLRL---KDIIHRDIK  157 (335)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHHTC--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCS
T ss_pred             HHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEEeccC
Confidence            46789999999999999999999999998766 999988543  368899999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc-----------------ccccCCCCC-CCcccchhhhhhhhccccccCCCCcc
Q 041845           80 STNILLDENWVAKHSRERQLRLL-----------------GSRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |+||+++.++.+|++|||.+...                 |+......+ +.++|||||||++|+|+++..|+...
T Consensus       158 p~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  233 (335)
T 3dls_A          158 DENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCEL  233 (335)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSG
T ss_pred             HHHEEEcCCCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhH
Confidence            99999999999999999976432                 222233444 67899999999999999988887643

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.96  E-value=3.3e-30  Score=190.93  Aligned_cols=128  Identities=20%  Similarity=0.176  Sum_probs=113.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+.+.+++||||+++|+|.+++...  ..+++..+..++.|++.|+.|||+   .+|+||||||+|||
T Consensus       400 ~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~gIiHrDLKp~NIL  474 (674)
T 3pfq_A          400 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQS---KGIIYRDLKLDNVM  474 (674)
T ss_dssp             CCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TSEECCCCCSTTEE
T ss_pred             CCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeEeccCChhhEE
Confidence            7999999999999999999999999999999999654  368899999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           85 LDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ++.++.+|++|||++..                  +|+.+....++.++|+|||||++|||+++..|+...
T Consensus       475 l~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~  545 (674)
T 3pfq_A          475 LDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  545 (674)
T ss_dssp             ECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             EcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC
Confidence            99999999999997642                  233344567899999999999999999998888654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.96  E-value=3.9e-30  Score=173.65  Aligned_cols=129  Identities=22%  Similarity=0.312  Sum_probs=108.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..++||||+++ ++.+.+... ...+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        55 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~---~~ivH~dikp  129 (292)
T 3o0g_A           55 LKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKP  129 (292)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-CHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCH
Confidence            4678999999999999999999999999976 666666433 3478899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccCCCC-CCCcccchhhhhhhhccccccCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRILPAK-LTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~-~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +||+++.++.+|++|||.+...                  |+...... ++.++|+||+||++|+|+++..|+
T Consensus       130 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~  202 (292)
T 3o0g_A          130 QNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred             HHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999977422                  22222333 789999999999999999866553

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.96  E-value=1.8e-30  Score=174.50  Aligned_cols=131  Identities=27%  Similarity=0.408  Sum_probs=113.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        74 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~  149 (283)
T 3gen_A           74 MNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAAR  149 (283)
T ss_dssp             HTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCSGG
T ss_pred             hcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCccc
Confidence            4678999999999999999999999999999999999543 3468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                   |+......++.++|+||+|+++|+|++ +..|+..
T Consensus       150 Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~  224 (283)
T 3gen_A          150 NCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER  224 (283)
T ss_dssp             GEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             eEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            999999999999999987522                   222333567889999999999999998 7777654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.96  E-value=1.5e-30  Score=181.30  Aligned_cols=133  Identities=19%  Similarity=0.196  Sum_probs=112.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..++||||+++++|.+.+... ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus       140 l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp  215 (373)
T 2x4f_A          140 MNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDE-SYNLTELDTILFMKQICEGIRHMHQ---MYILHLDLKP  215 (373)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCG
T ss_pred             HHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCcccccCCH
Confidence            46789999999999999999999999999999999888543 2467888899999999999999998   8999999999


Q ss_pred             CcEEE--cCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILL--DENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~--~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||++  +.++.+|++|||.+...                 |+.+....++.++|+|||||++|+|+++..|+...
T Consensus       216 ~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  291 (373)
T 2x4f_A          216 ENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD  291 (373)
T ss_dssp             GGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999  45678999999976532                 22233456778999999999999999988777543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.96  E-value=5.8e-30  Score=171.61  Aligned_cols=133  Identities=20%  Similarity=0.223  Sum_probs=108.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+++++++.+++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        65 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p  140 (278)
T 3cok_A           65 HCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLHS---HGILHRDLTL  140 (278)
T ss_dssp             HTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSSCCG
T ss_pred             HHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCH
Confidence            35789999999999999999999999999999999998543 3468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..                  +|+......++.++|+||+|+++|+|+++..|+...
T Consensus       141 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  215 (278)
T 3cok_A          141 SNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTD  215 (278)
T ss_dssp             GGEEECTTCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             HHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCh
Confidence            999999999999999987642                  222233445678999999999999999987777643

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.96  E-value=5.8e-30  Score=173.97  Aligned_cols=130  Identities=24%  Similarity=0.303  Sum_probs=111.3

Q ss_pred             CCCCCcceeeEEeecCC-----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            4 LRHRHLVSLIGHHVENK-----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~-----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      ++||||+++++++....     ..+++||++. ++|.+++.......+++..+..++.|++.|+.|||+   .+++|+||
T Consensus        71 ~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dl  146 (308)
T 3g33_A           71 FEHPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHA---NCIVHRDL  146 (308)
T ss_dssp             HCCTTBCCEEEEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCC
T ss_pred             cCCCCeEEeeeeeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCC
Confidence            45999999999998655     4789999997 599999976655568999999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|+||+++.++.+|++|||.+..                 +|+.+....++.++|+||+||++|+|+++..|+...
T Consensus       147 kp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  222 (308)
T 3g33_A          147 KPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN  222 (308)
T ss_dssp             CTTTEEECTTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS
T ss_pred             CHHHEEEcCCCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999997642                 222234567889999999999999999988777543

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.96  E-value=4.6e-30  Score=183.96  Aligned_cols=132  Identities=23%  Similarity=0.283  Sum_probs=113.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+.+..++||||+.+++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus        80 l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp  154 (484)
T 3nyv_A           80 LKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHK---NKIVHRDLKP  154 (484)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeCCCCH
Confidence            46789999999999999999999999999999999988543  468899999999999999999998   8999999999


Q ss_pred             CcEEE---cCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILL---DENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~---~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||++   +.++.+|++|||.+..                .+++...+.++.++||||+||++|+|+++..|+...
T Consensus       155 ~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  230 (484)
T 3nyv_A          155 ENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGA  230 (484)
T ss_dssp             GGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCC
Confidence            99999   4568899999997642                222333457899999999999999999988887643

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.96  E-value=1.1e-30  Score=175.90  Aligned_cols=132  Identities=26%  Similarity=0.354  Sum_probs=114.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+++..++||||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        64 ~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dikp~  140 (288)
T 3kfa_A           64 KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAAR  140 (288)
T ss_dssp             HHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHH---HTCCCSCCSGG
T ss_pred             HhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHH---CCccCCCCCcc
Confidence            467899999999999999999999999999999999976666678999999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                   |+......++.++|+||+|+++|+|++ +..|+..
T Consensus       141 Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~  215 (288)
T 3kfa_A          141 NCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG  215 (288)
T ss_dssp             GEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             eEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999976432                   222333567889999999999999998 7666654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.96  E-value=1.9e-30  Score=177.36  Aligned_cols=133  Identities=21%  Similarity=0.309  Sum_probs=108.0

Q ss_pred             CCCCCCCCcceeeEEeecCCch------hhhHhhhcCCCHHHHhhcC----CCCCCcHHHHHHHHHHHHHHHhHhhcCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEM------ILVYDCMARGTLRDHLYNN----HKPPLQWMWRLKICIGAARGLHYLHTGTR   70 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~------~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lh~~~~   70 (143)
                      |++++||||+++++++......      +++|||+++++|.+++...    ....+++..+..++.|++.|+.|||+   
T Consensus        79 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---  155 (323)
T 3qup_A           79 MKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS---  155 (323)
T ss_dssp             HTTCCCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHCCCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHc---
Confidence            4678999999999999876654      8999999999999988532    12257889999999999999999998   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                      .+++|+||||+||+++.++.++++|||.+...                    |+......++.++|+|||||++|+|++ 
T Consensus       156 ~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~  235 (323)
T 3qup_A          156 RNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTR  235 (323)
T ss_dssp             TTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhC
Confidence            89999999999999999999999999976422                    222334457889999999999999999 


Q ss_pred             ccCCCCc
Q 041845          130 LPMAENE  136 (143)
Q Consensus       130 ~~~~~~~  136 (143)
                      +..|+..
T Consensus       236 g~~p~~~  242 (323)
T 3qup_A          236 GQTPYAG  242 (323)
T ss_dssp             SCCTTTT
T ss_pred             CCCCccc
Confidence            7777764

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.96  E-value=1.4e-30  Score=178.30  Aligned_cols=130  Identities=26%  Similarity=0.345  Sum_probs=110.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++. ++..++|+||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        70 ~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dikp~  144 (325)
T 3kex_A           70 GSLDHAHIVRLLGLCP-GSSLQLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEE---HGMVHRNLAAR  144 (325)
T ss_dssp             HTCCCTTBCCEEEEEC-BSSEEEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHH---TTCCCSCCSST
T ss_pred             hcCCCCCcCeEEEEEc-CCccEEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHh---CCCCCCccchh
Confidence            4679999999999885 55688999999999999998543 3467888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcccc--------------------ccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLGS--------------------RILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~~--------------------~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+.....                    ......++.++|+||+||++|++++ +..|+..
T Consensus       145 Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~  220 (325)
T 3kex_A          145 NVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAG  220 (325)
T ss_dssp             TEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             eEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccc
Confidence            99999999999999998754321                    1223457789999999999999999 8777764

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.96  E-value=7.4e-31  Score=175.15  Aligned_cols=131  Identities=25%  Similarity=0.350  Sum_probs=112.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        58 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~  133 (268)
T 3sxs_A           58 MKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLES---HQFIHRDLAAR  133 (268)
T ss_dssp             HHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCSGG
T ss_pred             HhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCcCcc
Confidence            4578999999999999999999999999999999998543 2357889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                   |+......++.++|+||+|+++|+|++ +..|+..
T Consensus       134 Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~  208 (268)
T 3sxs_A          134 NCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDL  208 (268)
T ss_dssp             GEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             eEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccc
Confidence            999999999999999976422                   222223356789999999999999998 7777753

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.96  E-value=4.6e-30  Score=184.48  Aligned_cols=132  Identities=26%  Similarity=0.344  Sum_probs=112.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.++...++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        90 l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp  164 (494)
T 3lij_A           90 LKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHK---HNIVHRDLKP  164 (494)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSG
T ss_pred             HHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceeccCCh
Confidence            46789999999999999999999999999999999888544  367888999999999999999998   8999999999


Q ss_pred             CcEEEcCC---Ccccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDEN---WVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~---~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++..   +.+|++|||.+..                .+++.....++.++||||+||++|+|+++..|+...
T Consensus       165 ~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~  240 (494)
T 3lij_A          165 ENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQ  240 (494)
T ss_dssp             GGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999764   4589999997642                222233456889999999999999999988777643

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.96  E-value=1.2e-30  Score=180.40  Aligned_cols=132  Identities=25%  Similarity=0.306  Sum_probs=110.2

Q ss_pred             CC-CCCCcceeeEEeecCC-chhhhHhhhcCCCHHHHhhcCCC-------------------------------------
Q 041845            3 NL-RHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYNNHK-------------------------------------   43 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~-~~~lv~e~~~~~~l~~~~~~~~~-------------------------------------   43 (143)
                      .+ +||||+++++++.+++ ..+++|||+++|+|.+++.....                                     
T Consensus        81 ~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
T 3vhe_A           81 HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQ  160 (359)
T ss_dssp             HHCCCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------
T ss_pred             hhcCCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccc
Confidence            34 7899999999998755 48999999999999999965432                                     


Q ss_pred             ---------------------------CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCccccccc
Q 041845           44 ---------------------------PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRE   96 (143)
Q Consensus        44 ---------------------------~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~   96 (143)
                                                 ..+++..+..++.|++.|+.|||+   .+++|+||||+||+++.++.++++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~---~~ivH~Dikp~NIll~~~~~~kl~Df  237 (359)
T 3vhe_A          161 SSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDF  237 (359)
T ss_dssp             -----------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             cccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH---CCcccCCCChhhEEEcCCCcEEEEec
Confidence                                       127888899999999999999998   89999999999999999999999999


Q ss_pred             chhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCcc
Q 041845           97 RQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENEQ  137 (143)
Q Consensus        97 ~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~~  137 (143)
                      |.+...                    |+......++.++|||||||++|+|++ +..|+...
T Consensus       238 g~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  299 (359)
T 3vhe_A          238 GLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  299 (359)
T ss_dssp             GGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             cceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCcc
Confidence            987422                    222334567889999999999999998 77777543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.96  E-value=3.4e-30  Score=176.47  Aligned_cols=133  Identities=29%  Similarity=0.355  Sum_probs=113.0

Q ss_pred             CCCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHh
Q 041845            1 LSNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYL   65 (143)
Q Consensus         1 L~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~l   65 (143)
                      |+++ +||||+++++++.+++..+++|||+++++|.+++....              ...+++..++.++.|++.|+.||
T Consensus        79 l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L  158 (327)
T 1fvr_A           79 LCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL  158 (327)
T ss_dssp             HTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            3567 89999999999999999999999999999999986432              24678999999999999999999


Q ss_pred             hcCCCCCeeecCCCCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccc
Q 041845           66 HTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        66 h~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      |+   .+++|+||+|+||+++.++.++++|||.+..                 +|+......++.++|+||+|+++|+|+
T Consensus       159 H~---~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell  235 (327)
T 1fvr_A          159 SQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV  235 (327)
T ss_dssp             HH---TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             Hh---CCccCCCCccceEEEcCCCeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHH
Confidence            98   8999999999999999999999999997642                 122222345678899999999999999


Q ss_pred             c-ccCCCCc
Q 041845          129 M-LPMAENE  136 (143)
Q Consensus       129 ~-~~~~~~~  136 (143)
                      + +..|+..
T Consensus       236 t~g~~pf~~  244 (327)
T 1fvr_A          236 SLGGTPYCG  244 (327)
T ss_dssp             TTSCCTTTT
T ss_pred             cCCCCCCCC
Confidence            8 7777754

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.96  E-value=2e-30  Score=180.01  Aligned_cols=131  Identities=21%  Similarity=0.208  Sum_probs=108.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        71 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~ql~~~L~~LH~---~~ivH~Dlkp~  145 (361)
T 3uc3_A           71 RSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNA--GRFSEDEARFFFQQLLSGVSYCHS---MQICHRDLKLE  145 (361)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCSCCCCGG
T ss_pred             HhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHH
Confidence            4578999999999999999999999999999999988543  368899999999999999999998   89999999999


Q ss_pred             cEEEcCCCc--ccccccchhhc-----------------cccccCCCCCCCc-ccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWV--AKHSRERQLRL-----------------LGSRILPAKLTEK-SDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~--~k~~~~~~~~~-----------------~~~~~~~~~~~~~-~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.  +|++|||.+..                 +|+.+....++.+ +||||+||++|+|+++..|+...
T Consensus       146 Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (361)
T 3uc3_A          146 NTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDP  221 (361)
T ss_dssp             GEEECSSSSCCEEECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC--
T ss_pred             HEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCC
Confidence            999987665  89999997641                 2222333444444 89999999999999988887643

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.96  E-value=2e-30  Score=177.78  Aligned_cols=130  Identities=25%  Similarity=0.372  Sum_probs=110.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.++. .++++|++++++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        72 ~~l~h~~iv~~~~~~~~~~-~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~Dikp~  146 (327)
T 3poz_A           72 ASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAAR  146 (327)
T ss_dssp             HHCCBTTBCCEEEEEESSS-EEEEEECCTTCBHHHHHHHS-TTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGG
T ss_pred             HhCCCCCEeEEEEEEecCC-eEEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCChh
Confidence            4579999999999998754 67889999999999998654 3468889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+...                    |+......++.++|||||||++|+|++ +..|+..
T Consensus       147 NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~  222 (327)
T 3poz_A          147 NVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG  222 (327)
T ss_dssp             GEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             eEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccC
Confidence            999999999999999987432                    222334567889999999999999999 8777764

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.96  E-value=1.9e-30  Score=174.38  Aligned_cols=130  Identities=25%  Similarity=0.302  Sum_probs=105.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++ ..+..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        71 ~~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~  145 (281)
T 1mp8_A           71 RQFDHPHIVKLIGVI-TENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAAR  145 (281)
T ss_dssp             HTCCCTTBCCEEEEE-CSSSCEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             HhCCCCccceEEEEE-ccCccEEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeecccccHH
Confidence            567999999999988 456788999999999999998643 3468889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                   |+......++.++|+||+|+++|+|++ +..|+..
T Consensus       146 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~  220 (281)
T 1mp8_A          146 NVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG  220 (281)
T ss_dssp             GEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             HEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCc
Confidence            999999999999999976432                   222233567788999999999999997 6666653

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.96  E-value=9.5e-30  Score=174.00  Aligned_cols=110  Identities=19%  Similarity=0.284  Sum_probs=90.6

Q ss_pred             hhhhHhhhcCCCHHHHhhcCCC-CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           22 MILVYDCMARGTLRDHLYNNHK-PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        22 ~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      .+++|||+++++|.+++..... ....+..+..++.|++.|+.|||+   .+++|+|+||+||+++.++.+|++|||.+.
T Consensus       136 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~  212 (332)
T 3qd2_B          136 LYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVT  212 (332)
T ss_dssp             EEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHh---CCeeecCCCcccEEEeCCCCEEEeecCccc
Confidence            7899999999999999965432 233455688999999999999998   899999999999999999999999999764


Q ss_pred             cc------------------------------ccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845          101 LL------------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus       101 ~~------------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ..                              |+......++.++|+||+||++|+|+++..+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~  276 (332)
T 3qd2_B          213 AMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQ  276 (332)
T ss_dssp             ECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCH
T ss_pred             ccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCCh
Confidence            32                              22233456789999999999999999865443

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.96  E-value=8.2e-30  Score=171.03  Aligned_cols=132  Identities=24%  Similarity=0.266  Sum_probs=114.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++.++||||+++++++.+....+++|||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        63 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~---~~i~H~dlkp  137 (279)
T 3fdn_A           63 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHS---KRVIHRDIKP  137 (279)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHT---TTCEECCCCG
T ss_pred             HHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCEecccCCh
Confidence            35789999999999999999999999999999999988654  367889999999999999999997   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..                +|+......++.++|+||+|+++|+|+++..|+...
T Consensus       138 ~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  210 (279)
T 3fdn_A          138 ENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  210 (279)
T ss_dssp             GGEEECTTSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HhEEEcCCCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC
Confidence            999999999999999986532                233344556788999999999999999988877643

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.96  E-value=1e-30  Score=186.15  Aligned_cols=131  Identities=30%  Similarity=0.415  Sum_probs=110.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+ +..++||||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus       234 ~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~  309 (452)
T 1fmk_A          234 KKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAA  309 (452)
T ss_dssp             HHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             HhCCCCCEeeEEEEEcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChh
Confidence            46799999999999866 678999999999999999964433468889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+...                   |+......++.++||||||+++|||++ +..|+..
T Consensus       310 Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~  384 (452)
T 1fmk_A          310 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG  384 (452)
T ss_dssp             GEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             hEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCC
Confidence            999999999999999987532                   222233567889999999999999999 7777653

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.96  E-value=1.1e-29  Score=172.15  Aligned_cols=127  Identities=20%  Similarity=0.259  Sum_probs=112.6

Q ss_pred             CCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            3 NLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      ..+||||+++++++..    +...++||||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++|+||
T Consensus        67 ~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl  143 (299)
T 3m2w_A           67 ASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDV  143 (299)
T ss_dssp             HTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHH---TTEECCCC
T ss_pred             hccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCC
Confidence            3589999999999876    6778999999999999999977655678999999999999999999998   89999999


Q ss_pred             CCCcEEEcC---CCcccccccchhhccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDE---NWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~---~~~~k~~~~~~~~~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.   ++.++++|||.+..    .....++.++|+||+||++|+|+++..|+..
T Consensus       144 kp~Nil~~~~~~~~~~kl~Dfg~a~~----~~~~~~~~~~DiwslG~il~el~tg~~pf~~  200 (299)
T 3m2w_A          144 KPENLLYTSKRPNAILKLTDFGFAKE----TTGEKYDKSCDMWSLGVIMYILLCGYPPFYS  200 (299)
T ss_dssp             SGGGEEESSSSTTCCEEECCCTTCEE----CTTCGGGGHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CHHHEEEecCCCCCcEEEeccccccc----cccccCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            999999998   78899999997644    3456788999999999999999998877753

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.96  E-value=4.9e-30  Score=188.37  Aligned_cols=131  Identities=23%  Similarity=0.306  Sum_probs=112.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+ +..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus       390 l~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~---~~iiHrDlkp  464 (613)
T 2ozo_A          390 MHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEE---KNFVHRNLAA  464 (613)
T ss_dssp             HTTCCCTTBCCEEEEEES-SSEEEEEECCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSG
T ss_pred             HHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCEEcCcCCH
Confidence            467899999999999976 5689999999999999998543 4568899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.+|++|||++...                     |+.+....++.++|||||||++|||++ +..|+..
T Consensus       465 ~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~  542 (613)
T 2ozo_A          465 RNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKK  542 (613)
T ss_dssp             GGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             HHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            9999999999999999987532                     122223567889999999999999997 7777654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.96  E-value=5.7e-30  Score=184.37  Aligned_cols=131  Identities=26%  Similarity=0.314  Sum_probs=113.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.++...++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus       101 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~  175 (504)
T 3q5i_A          101 KSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHK---HNIVHRDIKPE  175 (504)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhCCCCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeCCCcHH
Confidence            5689999999999999999999999999999999988554  368899999999999999999998   89999999999


Q ss_pred             cEEEcCCC---cccccccchhhcc----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENW---VAKHSRERQLRLL----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~---~~k~~~~~~~~~~----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++   .+|++|||.+...                +++.....++.++||||+||++|+|+++..|+...
T Consensus       176 Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  250 (504)
T 3q5i_A          176 NILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQ  250 (504)
T ss_dssp             GEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99998775   6899999976422                22233456889999999999999999988887653

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.96  E-value=7.4e-30  Score=174.25  Aligned_cols=131  Identities=24%  Similarity=0.252  Sum_probs=109.7

Q ss_pred             CCCCCCCcceeeEEeecCC--chhhhHhhhcCCCHHHHhhcCCC-CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            2 SNLRHRHLVSLIGHHVENK--EMILVYDCMARGTLRDHLYNNHK-PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~--~~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +.++||||+++++++....  ..++||||+++++|.+++..... ..+++..+..++.|++.|+.|||+   .+++|+||
T Consensus        62 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dl  138 (319)
T 4euu_A           62 KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNI  138 (319)
T ss_dssp             HHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             HhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCC
Confidence            4678999999999987654  67899999999999999965432 338899999999999999999998   89999999


Q ss_pred             CCCcEEE----cCCCcccccccchhhcc-----------------ccccC--------CCCCCCcccchhhhhhhhcccc
Q 041845           79 KSTNILL----DENWVAKHSRERQLRLL-----------------GSRIL--------PAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        79 ~~~nil~----~~~~~~k~~~~~~~~~~-----------------~~~~~--------~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +|+||++    +..+.+|++|||.+...                 |+...        ...++.++|||||||++|+|++
T Consensus       139 kp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~  218 (319)
T 4euu_A          139 KPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT  218 (319)
T ss_dssp             SGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHh
Confidence            9999999    77778999999977432                 11111        3567889999999999999999


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..|+.
T Consensus       219 g~~pf~  224 (319)
T 4euu_A          219 GSLPFR  224 (319)
T ss_dssp             SSCSEE
T ss_pred             CCCCCC
Confidence            887775

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.96  E-value=7.3e-30  Score=174.47  Aligned_cols=130  Identities=20%  Similarity=0.185  Sum_probs=112.8

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+++..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        70 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~---~~ivH~dikp~  144 (321)
T 2a2a_A           70 RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHT---KKIAHFDLKPE  144 (321)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCChH
Confidence            4578999999999999999999999999999999999543  468899999999999999999998   89999999999


Q ss_pred             cEEEcCCC----cccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENW----VAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~----~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++    .++++|||.+..                 +|+......++.++|+||+|+++|+|+++..|+..
T Consensus       145 NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  220 (321)
T 2a2a_A          145 NIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  220 (321)
T ss_dssp             GEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCC
Confidence            99999887    789999997642                 22333446778899999999999999998877754

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.96  E-value=2.7e-30  Score=175.66  Aligned_cols=131  Identities=23%  Similarity=0.295  Sum_probs=112.0

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC----------------CCCcHHHHHHHHHHHHHHHhHh
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK----------------PPLQWMWRLKICIGAARGLHYL   65 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~i~~~l~~l   65 (143)
                      ++ +||||+++++++.+++..+++|||+++++|.+++.....                ..+++..+..++.|++.|+.||
T Consensus        82 ~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l  161 (313)
T 1t46_A           82 YLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFL  161 (313)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            45 899999999999999999999999999999999865432                2478899999999999999999


Q ss_pred             hcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhh
Q 041845           66 HTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCA  125 (143)
Q Consensus        66 h~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~  125 (143)
                      |+   .+++|+|++|+||+++.++.++++|||.+...                    |+......++.++|+||||+++|
T Consensus       162 H~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  238 (313)
T 1t46_A          162 AS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLW  238 (313)
T ss_dssp             HH---TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HH---CCeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHH
Confidence            98   89999999999999999999999999976432                    22223446788999999999999


Q ss_pred             cccc-ccCCCCc
Q 041845          126 RPAM-LPMAENE  136 (143)
Q Consensus       126 ~~~~-~~~~~~~  136 (143)
                      +|++ +..|+..
T Consensus       239 ellt~g~~p~~~  250 (313)
T 1t46_A          239 ELFSLGSSPYPG  250 (313)
T ss_dssp             HHHTTTCCSSTT
T ss_pred             HHHhCCCCCCCc
Confidence            9998 7777654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.96  E-value=1.2e-30  Score=176.42  Aligned_cols=130  Identities=25%  Similarity=0.388  Sum_probs=109.3

Q ss_pred             CCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++..  ....++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++
T Consensus        66 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dik  141 (295)
T 3ugc_A           66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLA  141 (295)
T ss_dssp             HTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCS
T ss_pred             HhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhc-ccccCHHHHHHHHHHHHHHHHHHhc---CCcccCCCC
Confidence            56899999999999864  35689999999999999999654 2357889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |+||+++.++.++++|||.+...                     |+......++.++||||+|+++|+|+++..|+.
T Consensus       142 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~  218 (295)
T 3ugc_A          142 TRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSK  218 (295)
T ss_dssp             GGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             HhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccC
Confidence            99999999999999999976432                     222334567889999999999999999765544

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=4.5e-30  Score=171.10  Aligned_cols=131  Identities=31%  Similarity=0.404  Sum_probs=112.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        58 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~  133 (267)
T 3t9t_A           58 MKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAAR  133 (267)
T ss_dssp             HTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSSCCGG
T ss_pred             HhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchh
Confidence            4679999999999999999999999999999999999654 3467889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                   |+......++.++|+||+|+++|+|++ +..|+..
T Consensus       134 Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~  208 (267)
T 3t9t_A          134 NCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN  208 (267)
T ss_dssp             GEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             eEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCC
Confidence            999999999999999976532                   111223566788999999999999999 7777654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.96  E-value=9.1e-30  Score=170.58  Aligned_cols=130  Identities=18%  Similarity=0.195  Sum_probs=112.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.++...++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        61 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp~  135 (277)
T 3f3z_A           61 KSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHK---LNVAHRDLKPE  135 (277)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCCCHH
Confidence            5689999999999999999999999999999999988543  367889999999999999999998   89999999999


Q ss_pred             cEEE---cCCCcccccccchhhcc----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILL---DENWVAKHSRERQLRLL----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~---~~~~~~k~~~~~~~~~~----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||++   +.++.++++|||.+...                +++.....++.++|+||+|+++|+|+++..|+..
T Consensus       136 Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  209 (277)
T 3f3z_A          136 NFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSA  209 (277)
T ss_dssp             GEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HEEEecCCCCCcEEEEecccceeccCccchhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCC
Confidence            9999   77788999999976421                2223334578899999999999999998877754

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=6.5e-30  Score=178.76  Aligned_cols=128  Identities=23%  Similarity=0.320  Sum_probs=107.9

Q ss_pred             CCC-CCCcceeeEEeecCC--chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            3 NLR-HRHLVSLIGHHVENK--EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         3 ~l~-h~niv~~~~~~~~~~--~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      .+. ||||+++++++..++  .+++||||++ ++|.+.+...   .++......++.|++.|+.|||+   .+++|||||
T Consensus        64 ~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlk  136 (388)
T 3oz6_A           64 ELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHS---GGLLHRDMK  136 (388)
T ss_dssp             HTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCC
T ss_pred             hccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHh---CCEEeCCCC
Confidence            454 999999999997544  6899999997 5999988543   67888889999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc---------------------------------------cccccCC-CCCCCcccchh
Q 041845           80 STNILLDENWVAKHSRERQLRL---------------------------------------LGSRILP-AKLTEKSDVYS  119 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~---------------------------------------~~~~~~~-~~~~~~~Di~s  119 (143)
                      |+||+++.++.+|++|||.++.                                       +|+.+.. ..++.++||||
T Consensus       137 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwS  216 (388)
T 3oz6_A          137 PSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWS  216 (388)
T ss_dssp             GGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHH
T ss_pred             HHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHH
Confidence            9999999999999999997742                                       2222333 56789999999


Q ss_pred             hhhhhhccccccCCCCcc
Q 041845          120 FGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       120 ~G~~~~~~~~~~~~~~~~  137 (143)
                      +||++|||+++..|+...
T Consensus       217 lG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          217 LGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             HHHHHHHHHHSSCSCCCS
T ss_pred             HHHHHHHHHhCCCCCCCC
Confidence            999999999988777643

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=4.7e-30  Score=176.35  Aligned_cols=131  Identities=27%  Similarity=0.377  Sum_probs=111.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+.+..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus       101 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~  176 (333)
T 1mqb_A          101 GQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAAR  176 (333)
T ss_dssp             HTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGG
T ss_pred             HhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCChh
Confidence            4679999999999999999999999999999999998643 3468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                     |+......++.++|+||||+++|++++ +..|+..
T Consensus       177 NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~  253 (333)
T 1mqb_A          177 NILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE  253 (333)
T ss_dssp             GEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             eEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCccc
Confidence            999999999999999876422                     222334567889999999999999998 7777653

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.96  E-value=5.7e-30  Score=175.57  Aligned_cols=132  Identities=24%  Similarity=0.369  Sum_probs=110.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.++. .+++++++.+++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||||
T Consensus        71 l~~l~hp~iv~~~~~~~~~~-~~~v~~~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp  145 (327)
T 3lzb_A           71 MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAA  145 (327)
T ss_dssp             HTTCCBTTBCCCCEEEESSS-EEEEECCCSSCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCCeeEEEEEEecCC-ceEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhh---CCCcCCCCCH
Confidence            46789999999999998765 77889999999999998654 3468889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+...                    |+......++.++||||+||++|+|++ +..|+...
T Consensus       146 ~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~  223 (327)
T 3lzb_A          146 RNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  223 (327)
T ss_dssp             GGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             HHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            9999999999999999987432                    222334567889999999999999999 87777643

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=9.3e-30  Score=171.95  Aligned_cols=128  Identities=25%  Similarity=0.355  Sum_probs=108.5

Q ss_pred             CCCCCCCcceeeEEeecCCch-hhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEM-ILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~-~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.++||||+++++++.+++.. ++++||+.+++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        77 ~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp  152 (298)
T 3pls_A           77 RGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLAE---QKFVHRDLAA  152 (298)
T ss_dssp             HTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSG
T ss_pred             HhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCCCc
Confidence            568999999999999876654 8999999999999999543 4567889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc----------------------ccccCCCCCCCcccchhhhhhhhccccccCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL----------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      +||+++.++.++++|||.+...                      |+......++.++|+||+|+++|+|+++..|
T Consensus       153 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~  227 (298)
T 3pls_A          153 RNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAP  227 (298)
T ss_dssp             GGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCC
T ss_pred             ceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCC
Confidence            9999999999999999976421                      2223345678899999999999999995443

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.96  E-value=1.2e-29  Score=172.60  Aligned_cols=132  Identities=17%  Similarity=0.142  Sum_probs=111.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++..++..++++||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        88 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dlkp  162 (309)
T 2h34_A           88 AGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHA---AGATHRDVKP  162 (309)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CcCCcCCCCh
Confidence            36789999999999999999999999999999999998653  367889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh-------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR-------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~-------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+.                   .+|+......++.++|+||||+++|+|+++..|+...
T Consensus       163 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  238 (309)
T 2h34_A          163 ENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD  238 (309)
T ss_dssp             GGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC
T ss_pred             HHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc
Confidence            99999999999999998653                   2233344566788999999999999999988877643

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.96  E-value=1.1e-29  Score=170.75  Aligned_cols=130  Identities=24%  Similarity=0.273  Sum_probs=113.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        69 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~  143 (284)
T 2vgo_A           69 SHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYCHE---RKVIHRDIKPE  143 (284)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCSGG
T ss_pred             hcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCHH
Confidence            4678999999999999999999999999999999998654  367889999999999999999997   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+..                +|+......++.++|+||+|+++|+|+++..|+..
T Consensus       144 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  214 (284)
T 2vgo_A          144 NLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDS  214 (284)
T ss_dssp             GEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             HEEEcCCCCEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCC
Confidence            99999999999999986532                22333455678899999999999999998877764

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.96  E-value=7.7e-30  Score=182.97  Aligned_cols=131  Identities=22%  Similarity=0.277  Sum_probs=112.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.++...++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        76 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dlkp~  150 (486)
T 3mwu_A           76 KKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPE  150 (486)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             HhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeEeccCchH
Confidence            4679999999999999999999999999999999988554  368899999999999999999998   89999999999


Q ss_pred             cEEEc---CCCcccccccchhh----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLD---ENWVAKHSRERQLR----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~---~~~~~k~~~~~~~~----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++   .++.+|++|||.+.                +.+++...+.++.++||||+||++|+|+++..|+...
T Consensus       151 Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  225 (486)
T 3mwu_A          151 NILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGK  225 (486)
T ss_dssp             GEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99995   44579999998764                2333344456889999999999999999988887543

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.96  E-value=7.8e-30  Score=175.34  Aligned_cols=131  Identities=21%  Similarity=0.219  Sum_probs=113.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        96 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~  170 (335)
T 2owb_A           96 RSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLG  170 (335)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGG
T ss_pred             HhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCEecCCCch
Confidence            4679999999999999999999999999999999988543  367889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                  |+......++.++|+||||+++|+|+++..|+...
T Consensus       171 NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  244 (335)
T 2owb_A          171 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  244 (335)
T ss_dssp             GEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             hEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC
Confidence            999999999999999986532                  12223345678999999999999999988777643

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.96  E-value=7.4e-30  Score=172.59  Aligned_cols=130  Identities=26%  Similarity=0.372  Sum_probs=108.6

Q ss_pred             CCCCCCCcceeeEEee-cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHV-ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++++||||+++++++. .++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        81 ~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH~---~~i~H~dikp  156 (298)
T 3f66_A           81 KDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLAS---KKFVHRDLAA  156 (298)
T ss_dssp             HTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSG
T ss_pred             HhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCch
Confidence            5689999999999865 456789999999999999999543 3567888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc----------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL----------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      +||+++.++.++++|||.+...                      |+......++.++|+||+|+++|++++ +..++.
T Consensus       157 ~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  234 (298)
T 3f66_A          157 RNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  234 (298)
T ss_dssp             GGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             heEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCc
Confidence            9999999999999999987422                      222234567889999999999999999 444443

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.96  E-value=6.7e-30  Score=176.99  Aligned_cols=132  Identities=23%  Similarity=0.289  Sum_probs=114.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-CeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRN-TIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-~i~h~~l~   79 (143)
                      |+.++||||+++++++.+++..++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   . +++|+||+
T Consensus        85 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlk  159 (360)
T 3eqc_A           85 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVK  159 (360)
T ss_dssp             GGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCS
T ss_pred             HHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCcc
Confidence            45689999999999999999999999999999999999654  367888999999999999999997   5 89999999


Q ss_pred             CCcEEEcCCCcccccccchhh----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           80 STNILLDENWVAKHSRERQLR----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |+||+++.++.++++|||.+.                .+|+......++.++|+||+||++|+|+++..|+...
T Consensus       160 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          160 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             GGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             HHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999763                2233344567788999999999999999988887643

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.96  E-value=2e-29  Score=169.93  Aligned_cols=131  Identities=29%  Similarity=0.400  Sum_probs=111.1

Q ss_pred             CCCCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC--ee
Q 041845            1 LSNLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT--II   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~--i~   74 (143)
                      |+.++||||+++++++..    ...+++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+  ++
T Consensus        79 l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~~~i~  153 (290)
T 1t4h_A           79 LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHT---RTPPII  153 (290)
T ss_dssp             HTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCC
T ss_pred             HHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHc---CCCCEE
Confidence            467899999999998864    35689999999999999999653  367889999999999999999997   77  99


Q ss_pred             ecCCCCCcEEEc-CCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLD-ENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~-~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+|++|+||+++ .++.++++|||.+..               .+++.....++.++|+||+|+++|+|+++..|+..
T Consensus       154 H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~  231 (290)
T 1t4h_A          154 HRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSE  231 (290)
T ss_dssp             CSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCC
Confidence            999999999997 788999999997642               22333445688999999999999999998877754

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=173.87  Aligned_cols=132  Identities=21%  Similarity=0.276  Sum_probs=112.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++..++||||+++ +|.+.+... ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dikp  128 (324)
T 3mtl_A           54 LKDLKHANIVTLHDIIHTEKSLTLVFEYLDK-DLKQYLDDC-GNIINMHNVKLFLFQLLRGLAYCHR---QKVLHRDLKP  128 (324)
T ss_dssp             HSCCCCTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTEEESSCCG
T ss_pred             HHhcCCCCCCeeeeEEeeCCEEEEEeccccc-CHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCccCCCcCH
Confidence            4678999999999999999999999999974 999888554 3467889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.++++|||.+..                  +|+.+.. ..++.++|+||+||++|+|+++..|+...
T Consensus       129 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  204 (324)
T 3mtl_A          129 QNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS  204 (324)
T ss_dssp             GGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999997532                  1222222 46789999999999999999988777643

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.96  E-value=1.6e-29  Score=171.01  Aligned_cols=133  Identities=27%  Similarity=0.324  Sum_probs=112.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhc------CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN------NHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      |++++||||+++++++..++..+++|||+++++|.+++..      .....+++..+..++.|++.|+.|||+   .+++
T Consensus        67 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~  143 (303)
T 2vwi_A           67 MSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK---NGQI  143 (303)
T ss_dssp             CCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHH---TTCC
T ss_pred             HhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCCC
Confidence            4678999999999999999999999999999999998853      123468899999999999999999998   8999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhccc----------------------cc-cCC-CCCCCcccchhhhhhhhccccc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRLLG----------------------SR-ILP-AKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~~~----------------------~~-~~~-~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      |+||+|+||+++.++.++++|||.+....                      ++ ... ..++.++|+||+|+++|+|+++
T Consensus       144 H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g  223 (303)
T 2vwi_A          144 HRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATG  223 (303)
T ss_dssp             CCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHS
T ss_pred             CCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999764321                      11 111 3468899999999999999998


Q ss_pred             cCCCCc
Q 041845          131 PMAENE  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      ..|+..
T Consensus       224 ~~pf~~  229 (303)
T 2vwi_A          224 AAPYHK  229 (303)
T ss_dssp             SCTTTT
T ss_pred             CCCCcc
Confidence            777754

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.96  E-value=2.7e-30  Score=178.24  Aligned_cols=129  Identities=18%  Similarity=0.115  Sum_probs=110.4

Q ss_pred             CCCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            2 SNLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      +.++||||+++++++..    +...+++|||+ +++|.+++....  .+++..+..++.|++.|+.|||+   .+++|||
T Consensus       103 ~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~D  176 (345)
T 2v62_A          103 KQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHE---NEYVHGD  176 (345)
T ss_dssp             HTCSCCCCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHH---TTEECSC
T ss_pred             ccccccCcceeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCeeCCC
Confidence            35789999999999987    67899999999 889999985543  78899999999999999999998   8999999


Q ss_pred             CCCCcEEEcCCC--cccccccchhhcc-------------------------ccccCCCCCCCcccchhhhhhhhccccc
Q 041845           78 VKSTNILLDENW--VAKHSRERQLRLL-------------------------GSRILPAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        78 l~~~nil~~~~~--~~k~~~~~~~~~~-------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      |+|+||+++.++  .++++|||.+...                         |+......++.++|||||||++|+|+++
T Consensus       177 lkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g  256 (345)
T 2v62_A          177 IKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCG  256 (345)
T ss_dssp             CSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhC
Confidence            999999999877  9999999987432                         1112234578899999999999999999


Q ss_pred             cCCCCc
Q 041845          131 PMAENE  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      ..|+..
T Consensus       257 ~~pf~~  262 (345)
T 2v62_A          257 KLPWEQ  262 (345)
T ss_dssp             SCTTGG
T ss_pred             CCCccc
Confidence            888853

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.96  E-value=7.7e-30  Score=172.65  Aligned_cols=130  Identities=20%  Similarity=0.258  Sum_probs=108.0

Q ss_pred             CCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++.+  ....++||||+++++|.+...   ...+++..+..++.|++.|+.|||+   .+++|+||+
T Consensus        91 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlk  164 (298)
T 2zv2_A           91 KKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHY---QKIIHRDIK  164 (298)
T ss_dssp             HTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCC
T ss_pred             HhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCC
Confidence            56799999999999986  567899999999999887652   2368899999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCCCC---CCCcccchhhhhhhhccccccCCCCcc
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILPAK---LTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~---~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |+||+++.++.+|++|||.+...                  |+......   ++.++|+||+||++|+|+++..|+...
T Consensus       165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  243 (298)
T 2zv2_A          165 PSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE  243 (298)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence            99999999999999999976422                  22222222   256789999999999999988877643

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.96  E-value=7.8e-30  Score=174.93  Aligned_cols=130  Identities=15%  Similarity=0.101  Sum_probs=111.8

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.+ +||||+++++++..++..++||||+ +++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        59 ~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~---~~iiHrDlkp  133 (330)
T 2izr_A           59 KQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHS---KNLIYRDVKP  133 (330)
T ss_dssp             HHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCG
T ss_pred             HHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCCH
Confidence            345 8999999999999999999999999 88999998653 3578899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCc-----ccccccchhhcc-------------------------ccccCCCCCCCcccchhhhhhhhccccc
Q 041845           81 TNILLDENWV-----AKHSRERQLRLL-------------------------GSRILPAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        81 ~nil~~~~~~-----~k~~~~~~~~~~-------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      +||+++.++.     ++++|||.+...                         |+......++.++|+|||||++|||+++
T Consensus       134 ~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g  213 (330)
T 2izr_A          134 ENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRG  213 (330)
T ss_dssp             GGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcC
Confidence            9999998877     999999987532                         1112334567889999999999999999


Q ss_pred             cCCCCc
Q 041845          131 PMAENE  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      ..|+..
T Consensus       214 ~~Pf~~  219 (330)
T 2izr_A          214 SLPWQG  219 (330)
T ss_dssp             SCTTTT
T ss_pred             CCCccc
Confidence            888865

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.96  E-value=2.1e-30  Score=177.76  Aligned_cols=131  Identities=24%  Similarity=0.316  Sum_probs=110.6

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC------------CCCCcHHHHHHHHHHHHHHHhHhhcCC
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH------------KPPLQWMWRLKICIGAARGLHYLHTGT   69 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~lh~~~   69 (143)
                      .+ +||||+++++++.+++..++||||+++++|.+++....            ...+++..+..++.|++.|+.|||+  
T Consensus       105 ~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~--  182 (333)
T 2i1m_A          105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS--  182 (333)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             hhcCCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhc--
Confidence            45 79999999999999999999999999999999985431            2357888999999999999999998  


Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                       .+++|+||+|+||+++.++.++++|||.+...                    |+......++.++||||||+++|+|++
T Consensus       183 -~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t  261 (333)
T 2i1m_A          183 -KNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS  261 (333)
T ss_dssp             -TTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred             -CCcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHc
Confidence             89999999999999999999999999987522                    121223467889999999999999998


Q ss_pred             -ccCCCCc
Q 041845          130 -LPMAENE  136 (143)
Q Consensus       130 -~~~~~~~  136 (143)
                       +..|+..
T Consensus       262 ~g~~p~~~  269 (333)
T 2i1m_A          262 LGLNPYPG  269 (333)
T ss_dssp             TSCCSSTT
T ss_pred             CCCCCCcc
Confidence             6666553

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=4e-30  Score=177.01  Aligned_cols=132  Identities=23%  Similarity=0.181  Sum_probs=108.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------------------------------C
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------------------------------K   43 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------------------------------~   43 (143)
                      +.++||||+++++++.+++..++||||+++++|.+.+....                                      .
T Consensus        83 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (345)
T 3hko_A           83 KKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLD  162 (345)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECC
T ss_pred             HhCCCCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            45789999999999999999999999999999999884210                                      1


Q ss_pred             CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCC--cccccccchhhc--------------------
Q 041845           44 PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENW--VAKHSRERQLRL--------------------  101 (143)
Q Consensus        44 ~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~--~~k~~~~~~~~~--------------------  101 (143)
                      ..+++..+..++.|++.|+.|||+   .+++|+||+|+||+++.++  .+|++|||.+..                    
T Consensus       163 ~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~  239 (345)
T 3hko_A          163 FVQREKLISNIMRQIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPY  239 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGG
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHH---CCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCcc
Confidence            123456778899999999999998   8999999999999998766  899999997642                    


Q ss_pred             --cccccC--CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845          102 --LGSRIL--PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       102 --~~~~~~--~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                        +|+.+.  ...++.++|||||||++|+|+++..|+..
T Consensus       240 y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  278 (345)
T 3hko_A          240 FVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPG  278 (345)
T ss_dssp             GCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence              122222  25678899999999999999998888754

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.96  E-value=1.4e-29  Score=171.04  Aligned_cols=131  Identities=21%  Similarity=0.219  Sum_probs=113.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        70 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dl~p~  144 (294)
T 2rku_A           70 RSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHR---NRVIHRDLKLG  144 (294)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGG
T ss_pred             HhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChH
Confidence            4679999999999999999999999999999999988543  367889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                  |+......++.++|+||+|+++|+|+++..|+...
T Consensus       145 Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  218 (294)
T 2rku_A          145 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  218 (294)
T ss_dssp             GEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             hEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999976432                  22223445778999999999999999988877643

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.96  E-value=4.9e-30  Score=175.12  Aligned_cols=133  Identities=23%  Similarity=0.349  Sum_probs=112.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------CCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------KPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      |+.++||||+++++++.+++..+++|||+++++|.+++....        ...+++..+..++.|++.|+.|||+   .+
T Consensus        82 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~  158 (322)
T 1p4o_A           82 MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NK  158 (322)
T ss_dssp             GGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             HHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHH---CC
Confidence            467899999999999999999999999999999999985321        1356788899999999999999998   89


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-cc
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LP  131 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~  131 (143)
                      ++|+||+|+||+++.++.++++|||.+..                    +|+......++.++|+||+|+++|+|++ +.
T Consensus       159 i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~  238 (322)
T 1p4o_A          159 FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE  238 (322)
T ss_dssp             CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSC
T ss_pred             CccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999997642                    1222234567889999999999999998 66


Q ss_pred             CCCCc
Q 041845          132 MAENE  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      .|+..
T Consensus       239 ~p~~~  243 (322)
T 1p4o_A          239 QPYQG  243 (322)
T ss_dssp             CTTTT
T ss_pred             Ccccc
Confidence            66653

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.96  E-value=6.1e-30  Score=172.33  Aligned_cols=134  Identities=19%  Similarity=0.276  Sum_probs=112.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++++.+....++||||+++++|.+.+...  ....+++..+..++.|++.|+.|||+   .+++|+||
T Consensus        74 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH~di  150 (285)
T 3is5_A           74 LKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHS---QHVVHKDL  150 (285)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCC
T ss_pred             HHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHh---CCEEECCC
Confidence            35689999999999999999999999999999999988432  23568899999999999999999998   89999999


Q ss_pred             CCCcEEEc---CCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           79 KSTNILLD---ENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        79 ~~~nil~~---~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|+||+++   .++.++++|||.+..                .+++.....++.++|+||+|+++|+|+++..|+...
T Consensus       151 kp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~  228 (285)
T 3is5_A          151 KPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGT  228 (285)
T ss_dssp             SGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCC
Confidence            99999994   457899999987642                222233456788999999999999999988877643

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.96  E-value=4.7e-30  Score=176.28  Aligned_cols=131  Identities=24%  Similarity=0.378  Sum_probs=110.6

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC--------------CCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK--------------PPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      .+ +||||+++++++.+++..++||||+++++|.+++.....              ..+++..+..++.|++.|+.|||+
T Consensus        96 ~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~  175 (334)
T 2pvf_A           96 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS  175 (334)
T ss_dssp             HHCCCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence            45 899999999999999999999999999999999965431              247888999999999999999998


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhhccc--------------------cccCCCCCCCcccchhhhhhhhcc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------------------SRILPAKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~--------------------~~~~~~~~~~~~Di~s~G~~~~~~  127 (143)
                         .+++|+||+|+||+++.++.+|++|||.+....                    +......++.++|+||+|+++|+|
T Consensus       176 ---~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  252 (334)
T 2pvf_A          176 ---QKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI  252 (334)
T ss_dssp             ---TTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHH
T ss_pred             ---CCeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHH
Confidence               899999999999999999999999999764221                    112234567889999999999999


Q ss_pred             cc-ccCCCCc
Q 041845          128 AM-LPMAENE  136 (143)
Q Consensus       128 ~~-~~~~~~~  136 (143)
                      ++ +..|+..
T Consensus       253 lt~g~~p~~~  262 (334)
T 2pvf_A          253 FTLGGSPYPG  262 (334)
T ss_dssp             HTTSCCSSTT
T ss_pred             HhCCCCCcCc
Confidence            98 7777654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.95  E-value=2.1e-30  Score=187.86  Aligned_cols=131  Identities=30%  Similarity=0.415  Sum_probs=111.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|+||+++++++.+ ...++||||+++++|.+++.......+++..+..++.|++.|+.|||+   ++++||||+|+
T Consensus       317 ~~l~hpniv~~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivHrDlkp~  392 (535)
T 2h8h_A          317 KKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAA  392 (535)
T ss_dssp             HHCCCTTBCCEEEEECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             HhCCCCCEeeEEEEEee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeeCCCCCHh
Confidence            56799999999999866 678999999999999999964333467889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      |||++.++.+|++|||.+...                   |+.+....++.++|||||||++|||++ +..|+..
T Consensus       393 NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~  467 (535)
T 2h8h_A          393 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG  467 (535)
T ss_dssp             GEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTT
T ss_pred             hEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999987532                   122233567889999999999999999 7766653

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.95  E-value=1.9e-29  Score=173.03  Aligned_cols=131  Identities=21%  Similarity=0.275  Sum_probs=109.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.++...++||||+++ +|.+++....  .+++..+..++.|++.|+.|||+   .+++|+||||
T Consensus        87 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~---~~ivH~Dlkp  160 (329)
T 3gbz_A           87 LKELQHRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHS---RRCLHRDLKP  160 (329)
T ss_dssp             GGGCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHHcCCCCcceEEEEEecCCEEEEEEecCCC-CHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEECCCCCH
Confidence            4678999999999999999999999999975 9999986543  58889999999999999999998   8999999999


Q ss_pred             CcEEEc-----CCCcccccccchhhc------------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLD-----ENWVAKHSRERQLRL------------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~-----~~~~~k~~~~~~~~~------------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++     ..+.+|++|||.+..                  +|+.+.. ..++.++||||+||++|+|+++..|+..
T Consensus       161 ~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  240 (329)
T 3gbz_A          161 QNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPG  240 (329)
T ss_dssp             GGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCC
Confidence            999994     445599999997642                  2222223 3478999999999999999998777754


Q ss_pred             c
Q 041845          137 Q  137 (143)
Q Consensus       137 ~  137 (143)
                      .
T Consensus       241 ~  241 (329)
T 3gbz_A          241 D  241 (329)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.95  E-value=1.3e-29  Score=180.56  Aligned_cols=122  Identities=23%  Similarity=0.335  Sum_probs=104.0

Q ss_pred             CCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++||||+++++++...     ..+++|||++. ++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||
T Consensus       107 ~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~---~~iiHr  180 (458)
T 3rp9_A          107 NRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHS---AGILHR  180 (458)
T ss_dssp             HHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCC
T ss_pred             HhCCCCCCCceEEEEecCCcccCceEEEEEeccc-cchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHh---CCcCCC
Confidence            457999999999999543     46899999985 6999988543  468899999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhc---------------------------------------------ccccc-CCCC
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRL---------------------------------------------LGSRI-LPAK  110 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~---------------------------------------------~~~~~-~~~~  110 (143)
                      ||||+|||++.++.+|++|||+++.                                             +|+.+ ....
T Consensus       181 DlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~  260 (458)
T 3rp9_A          181 DLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQEN  260 (458)
T ss_dssp             CCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCC
T ss_pred             CCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCC
Confidence            9999999999999999999998642                                             22222 3456


Q ss_pred             CCCcccchhhhhhhhcccc
Q 041845          111 LTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus       111 ~~~~~Di~s~G~~~~~~~~  129 (143)
                      ++.++||||+||++|||++
T Consensus       261 ~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          261 YTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CCTHHHHHHHHHHHHHHHT
T ss_pred             CCcHhHHHHHHHHHHHHHH
Confidence            8899999999999999997

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.95  E-value=1.9e-29  Score=169.45  Aligned_cols=130  Identities=18%  Similarity=0.161  Sum_probs=111.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        60 ~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~  134 (284)
T 3kk8_A           60 RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHS---NGIVHRNLKPE  134 (284)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGG
T ss_pred             HHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcCcCCCCHH
Confidence            4578999999999999999999999999999998888554  367889999999999999999998   89999999999


Q ss_pred             cEEEcCCCc---ccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWV---AKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~---~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.   ++++|||.+..                 +|+......++.++|+||+|+++|+|+++..|+..
T Consensus       135 Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~  209 (284)
T 3kk8_A          135 NLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD  209 (284)
T ss_dssp             GEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCC
Confidence            999986654   89999997632                 23334455678999999999999999998777653

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=8.3e-29  Score=169.83  Aligned_cols=122  Identities=27%  Similarity=0.362  Sum_probs=102.9

Q ss_pred             CCCCCCcceeeEEeecC----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-------
Q 041845            3 NLRHRHLVSLIGHHVEN----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRN-------   71 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-------   71 (143)
                      .++||||+++++++...    ...++||||+++++|.+++...   .+++..+..++.|++.|+.|||+   .       
T Consensus        87 ~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~~  160 (337)
T 3mdy_A           87 LMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHT---EIFSTQGK  160 (337)
T ss_dssp             TCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHS---CBCSTTCB
T ss_pred             hhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHH---hhhhhccC
Confidence            35899999999999876    6789999999999999999543   68889999999999999999997   6       


Q ss_pred             -CeeecCCCCCcEEEcCCCcccccccchhhcc----------------------ccccCCCCCCCc------ccchhhhh
Q 041845           72 -TIIHRDVKSTNILLDENWVAKHSRERQLRLL----------------------GSRILPAKLTEK------SDVYSFGV  122 (143)
Q Consensus        72 -~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~~~~~~------~Di~s~G~  122 (143)
                       +++||||||+||+++.++.+|++|||.+...                      |+.+........      +|||||||
T Consensus       161 ~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~  240 (337)
T 3mdy_A          161 PAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGL  240 (337)
T ss_dssp             CCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHH
T ss_pred             CCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHH
Confidence             9999999999999999999999999976321                      121222233333      89999999


Q ss_pred             hhhccccc
Q 041845          123 LCARPAML  130 (143)
Q Consensus       123 ~~~~~~~~  130 (143)
                      ++|||+++
T Consensus       241 il~el~tg  248 (337)
T 3mdy_A          241 ILWEVARR  248 (337)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            99999998

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.95  E-value=1.5e-29  Score=171.72  Aligned_cols=132  Identities=42%  Similarity=0.608  Sum_probs=112.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC-CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN-HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++... ....+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        85 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dlkp  161 (307)
T 2nru_A           85 AKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKS  161 (307)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCG
T ss_pred             HhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhc---CCeecCCCCH
Confidence            4578999999999999999999999999999999988533 23468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc-------------------cccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLLG-------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+....                   ++.....++.++|+||||+++|+|+++..|+..
T Consensus       162 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  236 (307)
T 2nru_A          162 ANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDE  236 (307)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCT
T ss_pred             HHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCccc
Confidence            99999999999999999754221                   112233467899999999999999998777654

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.95  E-value=7.2e-30  Score=176.49  Aligned_cols=130  Identities=31%  Similarity=0.394  Sum_probs=110.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+. |++.+.+... ...+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus       109 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dlkp~  183 (348)
T 1u5q_A          109 QKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAG  183 (348)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGG
T ss_pred             HhCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHH
Confidence            46799999999999999999999999997 5888877432 3468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------cccc---CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------GSRI---LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------~~~~---~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+...              |+.+   ....++.++|||||||++|||+++..|+..
T Consensus       184 NIll~~~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~  255 (348)
T 1u5q_A          184 NILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  255 (348)
T ss_dssp             GEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HEEECCCCCEEEeeccCceecCCCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999976422              2222   245688999999999999999998777654

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.95  E-value=1.3e-29  Score=172.35  Aligned_cols=131  Identities=21%  Similarity=0.250  Sum_probs=112.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+++..++||||++++++..++...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        57 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~---~~ivH~dlkp~  131 (311)
T 4agu_A           57 KQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHK---HNCIHRDVKPE  131 (311)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCChh
Confidence            4578999999999999999999999999998888887543  468889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                  |+.+. ...++.++|+||+|+++|+|+++..|+...
T Consensus       132 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  206 (311)
T 4agu_A          132 NILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGK  206 (311)
T ss_dssp             GEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999976422                  22222 246789999999999999999988777543

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.95  E-value=1.8e-29  Score=170.71  Aligned_cols=122  Identities=25%  Similarity=0.331  Sum_probs=102.0

Q ss_pred             CCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhh--------cCCC
Q 041845            3 NLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLH--------TGTR   70 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh--------~~~~   70 (143)
                      .++||||+++++++..    ....+++|||+++++|.+++..   ..+++..+..++.|++.|+.|||        +   
T Consensus        58 ~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---  131 (301)
T 3q4u_A           58 MLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK---  131 (301)
T ss_dssp             CCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCB---
T ss_pred             hccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCC---
Confidence            4799999999998754    3458899999999999999943   36889999999999999999999        7   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcc----------------------ccccCCC------CCCCcccchhhhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLL----------------------GSRILPA------KLTEKSDVYSFGV  122 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~------~~~~~~Di~s~G~  122 (143)
                      .+++||||||+||+++.++.+|++|||.+...                      |+.....      .++.++|||||||
T Consensus       132 ~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~  211 (301)
T 3q4u_A          132 PAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGL  211 (301)
T ss_dssp             CEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHH
Confidence            89999999999999999999999999976321                      1112222      2346899999999


Q ss_pred             hhhccccc
Q 041845          123 LCARPAML  130 (143)
Q Consensus       123 ~~~~~~~~  130 (143)
                      ++|||+++
T Consensus       212 il~el~tg  219 (301)
T 3q4u_A          212 VLWEVARR  219 (301)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            99999998

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.95  E-value=3.4e-30  Score=174.46  Aligned_cols=129  Identities=24%  Similarity=0.401  Sum_probs=108.0

Q ss_pred             CCCCCCCcceeeEEeecC--CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVEN--KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~--~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++.+.  +..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++
T Consensus        78 ~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dik  153 (302)
T 4e5w_A           78 RNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN-KNKINLKQQLKYAVQICKGMDYLGS---RQYVHRDLA  153 (302)
T ss_dssp             HTCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCS
T ss_pred             HhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHhhc---CCcccCCCc
Confidence            568999999999999876  6689999999999999998543 2468889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhccc---------------------cccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           80 STNILLDENWVAKHSRERQLRLLG---------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~~---------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      |+||+++.++.++++|||.+....                     +......++.++|+||+|+++|+|+++..|+
T Consensus       154 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~  229 (302)
T 4e5w_A          154 ARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSD  229 (302)
T ss_dssp             GGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGG
T ss_pred             hheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCC
Confidence            999999999999999999764322                     1122334567899999999999999976543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.95  E-value=1.4e-29  Score=180.73  Aligned_cols=128  Identities=22%  Similarity=0.273  Sum_probs=107.8

Q ss_pred             CCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++....      ..++||||+++ ++.+.+..    .+++..+..++.|++.|+.|||+   .+++|
T Consensus       116 ~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~---~~iiH  187 (464)
T 3ttj_A          116 KCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS---AGIIH  187 (464)
T ss_dssp             HHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred             HhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHH---CCccc
Confidence            4679999999999997654      46999999976 67776632    47888899999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||||+||+++.++.+|++|||.+..                 +|+.+....++.++||||+||++|||+++..|+...
T Consensus       188 rDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~  266 (464)
T 3ttj_A          188 RDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  266 (464)
T ss_dssp             CCCCGGGEEECTTSCEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999997642                 333345567889999999999999999988887654

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.95  E-value=2.4e-29  Score=171.18  Aligned_cols=132  Identities=21%  Similarity=0.285  Sum_probs=107.7

Q ss_pred             CCCCCCCcceeeEEeecCCc-----hhhhHhhhcCCCHHHHhhc----CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKE-----MILVYDCMARGTLRDHLYN----NHKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~-----~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      +.++||||+++++++.+.+.     .+++|||+++++|.+++..    .....+++..++.++.|++.|+.|||+   .+
T Consensus        91 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~  167 (313)
T 3brb_A           91 KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN---RN  167 (313)
T ss_dssp             HTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHT---TT
T ss_pred             hcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            56899999999999986543     4899999999999998842    233568899999999999999999998   89


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-cc
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LP  131 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~  131 (143)
                      ++|+||+|+||+++.++.++++|||.+...                    |+......++.++|+||||+++|+|++ +.
T Consensus       168 ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~  247 (313)
T 3brb_A          168 FLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGM  247 (313)
T ss_dssp             CCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             cccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCC
Confidence            999999999999999999999999976422                    222334567889999999999999999 66


Q ss_pred             CCCCc
Q 041845          132 MAENE  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      .|+..
T Consensus       248 ~p~~~  252 (313)
T 3brb_A          248 TPYPG  252 (313)
T ss_dssp             CSSTT
T ss_pred             CCCcc
Confidence            66653

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.95  E-value=3.4e-29  Score=170.63  Aligned_cols=123  Identities=21%  Similarity=0.159  Sum_probs=107.0

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .+||||+++++++.+++..++||||+ +++|.+.+... ...+++..++.++.|++.|+.|||+   .+++|+||||+||
T Consensus       114 ~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dikp~NI  188 (311)
T 3p1a_A          114 GQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLHS---QGLVHLDVKPANI  188 (311)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGE
T ss_pred             cCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCEecCCCCHHHE
Confidence            38999999999999999999999999 56998888544 3468999999999999999999998   8999999999999


Q ss_pred             EEcCCCcccccccchhh----------------ccccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           84 LLDENWVAKHSRERQLR----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        84 l~~~~~~~k~~~~~~~~----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      +++.++.+|++|||.+.                +.+++...+.++.++|||||||++|||+++.
T Consensus       189 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~  252 (311)
T 3p1a_A          189 FLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNM  252 (311)
T ss_dssp             EECGGGCEEECCCTTCEECC------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTC
T ss_pred             EECCCCCEEEccceeeeecccCCCCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCC
Confidence            99999999999998753                2233344457889999999999999999974

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.95  E-value=1.9e-29  Score=168.75  Aligned_cols=131  Identities=24%  Similarity=0.265  Sum_probs=111.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++..  ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        60 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~  134 (276)
T 2yex_A           60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPE  134 (276)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHh---CCeeccCCChH
Confidence            467999999999999999999999999999999998843  3467889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------------ccccCCCCC-CCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------------GSRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                    |+......+ +.++|+||+|+++|+|+++..|+...
T Consensus       135 Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  211 (276)
T 2yex_A          135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  211 (276)
T ss_dssp             GEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             HEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999976421                    222222233 56899999999999999988887643

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.95  E-value=5.9e-29  Score=167.37  Aligned_cols=130  Identities=28%  Similarity=0.413  Sum_probs=108.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC--eeecCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT--IIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~~l   78 (143)
                      |+.++||||+++++++.++.  +++|||+++++|.+.+... ...+++..+..++.|++.|+.|||+   .+  ++|+|+
T Consensus        77 l~~l~h~~i~~~~~~~~~~~--~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~---~~~~ivH~di  150 (287)
T 4f0f_A           77 MSNLNHPNIVKLYGLMHNPP--RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQN---QNPPIVHRDL  150 (287)
T ss_dssp             HTTCCCTTBCCEEEEETTTT--EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHT---SSSCCBCSCC
T ss_pred             HHhCCCCCchhhheeecCCC--eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHh---CCCCeecCCC
Confidence            35789999999999987655  6899999999999888543 3578899999999999999999997   78  999999


Q ss_pred             CCCcEEEcCCCc-----ccccccchhh--------------c-ccccc--CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWV-----AKHSRERQLR--------------L-LGSRI--LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~-----~k~~~~~~~~--------------~-~~~~~--~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++.     ++++|||.+.              + +|+.+  ....++.++|+||+||++|+|+++..|+..
T Consensus       151 kp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~  230 (287)
T 4f0f_A          151 RSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDE  230 (287)
T ss_dssp             SGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             CcceEEEeccCCCCceeEEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcc
Confidence            999999987766     8999998764              2 22222  234467889999999999999998888764

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.95  E-value=3e-29  Score=168.42  Aligned_cols=130  Identities=21%  Similarity=0.220  Sum_probs=112.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.++...+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        63 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dl~p~  137 (283)
T 3bhy_A           63 REIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLHS---KRIAHFDLKPE  137 (283)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhCCCCCeeehhheecCCCeEEEEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCChH
Confidence            4578999999999999999999999999999999998543  367889999999999999999998   89999999999


Q ss_pred             cEEEcCCC----cccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENW----VAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~----~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++    .++++|||.+..                 +|+......++.++|+||+|+++|+|+++..|+..
T Consensus       138 Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  213 (283)
T 3bhy_A          138 NIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  213 (283)
T ss_dssp             GEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             HEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCC
Confidence            99998776    789999987642                 22333446778899999999999999998877754

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.3e-29  Score=171.30  Aligned_cols=131  Identities=24%  Similarity=0.254  Sum_probs=113.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        79 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~---~~i~H~dl~p~  154 (314)
T 3com_A           79 QQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAG  154 (314)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCCcCCCcCHH
Confidence            4679999999999999999999999999999999998532 3468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                  |+......++.++|+||||+++|+|+++..|+..
T Consensus       155 Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  227 (314)
T 3com_A          155 NILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYAD  227 (314)
T ss_dssp             GEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999976422                  2223344678899999999999999998877754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.95  E-value=8.3e-30  Score=171.08  Aligned_cols=130  Identities=21%  Similarity=0.331  Sum_probs=109.6

Q ss_pred             CCCCCCCcceeeEEeec----------------CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHh
Q 041845            2 SNLRHRHLVSLIGHHVE----------------NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYL   65 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~----------------~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l   65 (143)
                      +.++||||+++++++..                ....+++|||+++++|.+++.......+++..+..++.|++.|+.||
T Consensus        59 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l  138 (284)
T 2a19_B           59 AKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYI  138 (284)
T ss_dssp             HHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45789999999998854                34589999999999999999655445788999999999999999999


Q ss_pred             hcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccc
Q 041845           66 HTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        66 h~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      |+   .+++|+||+|+||+++.++.++++|||.+...                 |+......++.++|+||||+++|+|+
T Consensus       139 H~---~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  215 (284)
T 2a19_B          139 HS---KKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELL  215 (284)
T ss_dssp             HH---TTEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHH
T ss_pred             Hh---CCeeeccCCHHHEEEcCCCCEEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHH
Confidence            98   89999999999999999999999999975432                 22233456788999999999999999


Q ss_pred             cccCCC
Q 041845          129 MLPMAE  134 (143)
Q Consensus       129 ~~~~~~  134 (143)
                      ++..++
T Consensus       216 ~~~~~~  221 (284)
T 2a19_B          216 HVCDTA  221 (284)
T ss_dssp             SCCSSH
T ss_pred             hcCCcc
Confidence            875544

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.95  E-value=3e-29  Score=170.19  Aligned_cols=130  Identities=20%  Similarity=0.213  Sum_probs=112.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        61 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dikp~  135 (304)
T 2jam_A           61 KKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHE---NGIVHRDLKPE  135 (304)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCSCCGG
T ss_pred             HhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCCHH
Confidence            4578999999999999999999999999999999988544  367889999999999999999998   89999999999


Q ss_pred             cEEE---cCCCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILL---DENWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~---~~~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||++   +.++.++++|||.+..                +|+......++.++|+||+|+++|+|+++..|+..
T Consensus       136 NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  209 (304)
T 2jam_A          136 NLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYE  209 (304)
T ss_dssp             GCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            9999   6778899999997542                33334456678899999999999999998877754

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.95  E-value=1e-29  Score=187.25  Aligned_cols=129  Identities=26%  Similarity=0.299  Sum_probs=110.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.. +..++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus       425 ~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~---~~iiHrDLkp~  498 (635)
T 4fl3_A          425 QQLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAAR  498 (635)
T ss_dssp             HHCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             HhCCCCCEeeEEEEEec-CCEEEEEEccCCCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHH---CCEeCCCCChH
Confidence            46789999999999864 4578999999999999999643  467889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+...                     |+.+....++.++|||||||++|||++ +..|+..
T Consensus       499 NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~  575 (635)
T 4fl3_A          499 NVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG  575 (635)
T ss_dssp             GEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             hEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999986532                     222233467889999999999999998 8777764

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.95  E-value=5.3e-29  Score=170.68  Aligned_cols=129  Identities=19%  Similarity=0.166  Sum_probs=112.3

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++..++||||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++|+||+|+||+
T Consensus        87 ~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~---~givH~Dikp~NIl  163 (327)
T 3lm5_A           87 SCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQ---NNIVHLDLKPQNIL  163 (327)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEE
T ss_pred             CCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH---CCeecCcCChHHEE
Confidence            579999999999999999999999999999999865555678999999999999999999998   89999999999999


Q ss_pred             EcC---CCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDE---NWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~---~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ++.   .+.++++|||.+..                 +|+......++.++|+||+|+++|+|+++..|+..
T Consensus       164 ~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  235 (327)
T 3lm5_A          164 LSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVG  235 (327)
T ss_dssp             ESCBTTBCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             EecCCCCCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            987   68899999997642                 23333456778999999999999999998877754

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.95  E-value=2.4e-29  Score=172.55  Aligned_cols=131  Identities=26%  Similarity=0.317  Sum_probs=110.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||++++++..+....  ..+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        79 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~---~~ivH~dlkp~  153 (331)
T 4aaa_A           79 KQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCHS---HNIIHRDIKPE  153 (331)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred             hhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHH---CCEEccCcChh
Confidence            4678999999999999999999999999998888876433  368899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                  |+.+.. ..++.++|+||+||++|+|+++..|+...
T Consensus       154 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (331)
T 4aaa_A          154 NILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGD  228 (331)
T ss_dssp             GEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             eEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999976421                  222222 25788999999999999999988777644

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.95  E-value=7.8e-30  Score=171.07  Aligned_cols=133  Identities=31%  Similarity=0.417  Sum_probs=109.1

Q ss_pred             CCCCCCCCcceeeEEeecC-CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN-KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |+.++||||+++++++.+. +..+++|||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++|+|++
T Consensus        68 l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlk  144 (278)
T 1byg_A           68 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLA  144 (278)
T ss_dssp             HTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCS
T ss_pred             HHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHh---CCccccCCC
Confidence            4678999999999987654 578999999999999999865433346788899999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      |+||+++.++.++++|||.+..               +|+......++.++|+||+|+++|+|++ +..|+..
T Consensus       145 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~  217 (278)
T 1byg_A          145 ARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  217 (278)
T ss_dssp             GGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred             cceEEEeCCCcEEEeeccccccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999997642               2222334567889999999999999998 7777654

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.95  E-value=1.7e-29  Score=174.26  Aligned_cols=127  Identities=19%  Similarity=0.231  Sum_probs=106.8

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++..++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||+|+||+
T Consensus        74 ~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~---~givHrDlkp~NIl  148 (342)
T 2qr7_A           74 QHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLHA---QGVVHRDLKPSNIL  148 (342)
T ss_dssp             TSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEE
T ss_pred             CCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcEeccCCHHHEE
Confidence            7999999999999999999999999999999998544  468899999999999999999998   89999999999999


Q ss_pred             EcCC----Ccccccccchhhccccc------------------cCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDEN----WVAKHSRERQLRLLGSR------------------ILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~~----~~~k~~~~~~~~~~~~~------------------~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +...    +.+|++|||.+......                  +....++.++|+||+||++|+|+++..|+..
T Consensus       149 ~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~  222 (342)
T 2qr7_A          149 YVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFAN  222 (342)
T ss_dssp             ESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred             EecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCC
Confidence            8543    34899999987532211                  1112356789999999999999998877754

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.95  E-value=1.5e-29  Score=168.94  Aligned_cols=129  Identities=28%  Similarity=0.362  Sum_probs=107.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC---eeecCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT---IIHRDV   78 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~---i~h~~l   78 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++..   ..+++..+..++.|++.|+.|||+   .+   ++|+|+
T Consensus        61 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~---~~~~~i~H~di  134 (271)
T 3dtc_A           61 AMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHD---EAIVPIIHRDL  134 (271)
T ss_dssp             HHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHH---SSSSCCCCSCC
T ss_pred             HhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCCCceeecCC
Confidence            457899999999999999999999999999999998843   368889999999999999999998   66   899999


Q ss_pred             CCCcEEEcC--------CCcccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           79 KSTNILLDE--------NWVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        79 ~~~nil~~~--------~~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +|+||+++.        ++.++++|||.+..                +|+......++.++|+||+|+++|+|+++..|+
T Consensus       135 kp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~  214 (271)
T 3dtc_A          135 KSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPF  214 (271)
T ss_dssp             SGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             chHHEEEecccccccccCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            999999986        67799999987642                222233456788999999999999999988877


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       215 ~~  216 (271)
T 3dtc_A          215 RG  216 (271)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.5e-29  Score=170.49  Aligned_cols=130  Identities=25%  Similarity=0.336  Sum_probs=109.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++ ..+..+++||++++++|.+++.. ....+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        65 ~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~  139 (287)
T 1u59_A           65 HQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAAR  139 (287)
T ss_dssp             HHCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCEeEEEEEe-cCCCcEEEEEeCCCCCHHHHHHh-CCccCCHHHHHHHHHHHHHHHHHHHH---CCEeeCCCchh
Confidence            457899999999999 55678999999999999999853 34568899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccc---------------------cccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLG---------------------SRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~---------------------~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+....                     +......++.++|+||+|+++|+|++ +..|+..
T Consensus       140 Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~  216 (287)
T 1u59_A          140 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKK  216 (287)
T ss_dssp             GEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             eEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCccc
Confidence            9999999999999999764321                     11122456778999999999999998 8777754

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.95  E-value=3.9e-29  Score=168.69  Aligned_cols=120  Identities=8%  Similarity=0.002  Sum_probs=104.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++++|.+++..+    ........++.|++.|+.|||+   .+++|+||||+
T Consensus        86 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~---~givH~Dikp~  158 (286)
T 3uqc_A           86 SRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHR---AGVALSIDHPS  158 (286)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGG
T ss_pred             hcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHH---CCCccCCCCcc
Confidence            4689999999999999999999999999999999998432    2344678899999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+++.+++.         ...++.++|+|||||++|+|+++..|+...
T Consensus       159 NIll~~~g~~kl~~~~~---------~~~~~~~~Di~slG~il~elltg~~Pf~~~  205 (286)
T 3uqc_A          159 RVRVSIDGDVVLAYPAT---------MPDANPQDDIRGIGASLYALLVNRWPLPEA  205 (286)
T ss_dssp             GEEEETTSCEEECSCCC---------CTTCCHHHHHHHHHHHHHHHHHSEECSCCC
T ss_pred             cEEEcCCCCEEEEeccc---------cCCCCchhHHHHHHHHHHHHHHCCCCCCcC
Confidence            99999999999885542         135789999999999999999988887654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.95  E-value=2.1e-29  Score=172.56  Aligned_cols=132  Identities=28%  Similarity=0.343  Sum_probs=110.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-----CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-----PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++||||+++++++.++...+++|||+++++|.+++.....     ..+++..+..++.|++.|+.|||+   .+++|+
T Consensus        88 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~---~~i~H~  164 (327)
T 2yfx_A           88 SKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEE---NHFIHR  164 (327)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHH---TTCCCS
T ss_pred             hhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhh---CCeecC
Confidence            457899999999999999999999999999999999965432     347788899999999999999998   899999


Q ss_pred             CCCCCcEEEcC---CCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhcccc-ccC
Q 041845           77 DVKSTNILLDE---NWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPM  132 (143)
Q Consensus        77 ~l~~~nil~~~---~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~  132 (143)
                      ||+|+||+++.   +..++++|||.+..                    +|+......++.++|+||||+++|+|++ +..
T Consensus       165 dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~  244 (327)
T 2yfx_A          165 DIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYM  244 (327)
T ss_dssp             CCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             cCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCC
Confidence            99999999984   44689999997642                    2222334567889999999999999998 766


Q ss_pred             CCCc
Q 041845          133 AENE  136 (143)
Q Consensus       133 ~~~~  136 (143)
                      |+..
T Consensus       245 p~~~  248 (327)
T 2yfx_A          245 PYPS  248 (327)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            6653

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.95  E-value=1.8e-29  Score=173.26  Aligned_cols=126  Identities=23%  Similarity=0.326  Sum_probs=101.5

Q ss_pred             CCCCCCCcceeeEEee-----cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-----
Q 041845            2 SNLRHRHLVSLIGHHV-----ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRN-----   71 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~-----~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-----   71 (143)
                      +.++||||+++++.+.     .....++||||+++++|.+++...   ..++.....++.|++.|+.|||+   .     
T Consensus        62 ~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH~---~~~~~~  135 (336)
T 3g2f_A           62 PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLHT---ELPRGD  135 (336)
T ss_dssp             TTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHC---CBCCGG
T ss_pred             HhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHh---hhcccc
Confidence            4579999999998553     233578999999999999999544   34788889999999999999997   6     


Q ss_pred             ----CeeecCCCCCcEEEcCCCcccccccchhhccc--------------------------cccCC-------CCCCCc
Q 041845           72 ----TIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------------------------SRILP-------AKLTEK  114 (143)
Q Consensus        72 ----~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~--------------------------~~~~~-------~~~~~~  114 (143)
                          +++||||||+||+++.++.+|++|||.+....                          +.+..       ..++.+
T Consensus       136 ~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~  215 (336)
T 3g2f_A          136 HYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQ  215 (336)
T ss_dssp             GCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHH
T ss_pred             ccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccc
Confidence                99999999999999999999999999874321                          11111       233457


Q ss_pred             ccchhhhhhhhccccccCC
Q 041845          115 SDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus       115 ~Di~s~G~~~~~~~~~~~~  133 (143)
                      +|||||||++|||+++..|
T Consensus       216 ~DiwslG~il~ell~g~~p  234 (336)
T 3g2f_A          216 VDMYALGLIYWEIFMRCTD  234 (336)
T ss_dssp             HHHHHHHHHHHHHHTTBGG
T ss_pred             cchHHHHHHHHHHHhcCCc
Confidence            8999999999999986433

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.95  E-value=4.4e-29  Score=169.80  Aligned_cols=133  Identities=24%  Similarity=0.355  Sum_probs=108.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC-CCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK-PPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.++||||+++++++.+  ..++||||+++++|.+++..... ..+....+..++.|++.|+.|||+....+++|+||+|
T Consensus        56 ~~l~hp~iv~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp  133 (307)
T 2eva_A           56 SRVNHPNIVKLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKP  133 (307)
T ss_dssp             HHCCCTTBCCEEEBCTT--TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSG
T ss_pred             hcCCCCCcCeEEEEEcC--CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCCh
Confidence            46789999999998864  48899999999999999965432 2467788899999999999999964336899999999


Q ss_pred             CcEEEcCCCc-ccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWV-AKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~-~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++. +|++|||.+.               .+|+......++.++||||||+++|+|+++..|+..
T Consensus       134 ~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  205 (307)
T 2eva_A          134 PNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE  205 (307)
T ss_dssp             GGEEEETTTTEEEECCCCC------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTT
T ss_pred             hHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchh
Confidence            9999988776 7999999763               223334456788999999999999999998877763

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.95  E-value=6.5e-29  Score=173.50  Aligned_cols=133  Identities=17%  Similarity=0.224  Sum_probs=108.3

Q ss_pred             CCCCCCCCcceeeEEeec--------------------------------------CCchhhhHhhhcCCCHHHHhhc--
Q 041845            1 LSNLRHRHLVSLIGHHVE--------------------------------------NKEMILVYDCMARGTLRDHLYN--   40 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--------------------------------------~~~~~lv~e~~~~~~l~~~~~~--   40 (143)
                      |+.++||||+++++++..                                      ....++||||+++ +|.+.+..  
T Consensus        54 l~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~  132 (383)
T 3eb0_A           54 MKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFI  132 (383)
T ss_dssp             HTTCCCTTBCCEEEEEEEC-------------------------------------CCEEEEEECCCSE-EHHHHHHHHH
T ss_pred             HHHcCCCCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHH
Confidence            467899999999999843                                      2348899999985 87776642  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEc-CCCcccccccchhhc-----------------c
Q 041845           41 NHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLD-ENWVAKHSRERQLRL-----------------L  102 (143)
Q Consensus        41 ~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~-~~~~~k~~~~~~~~~-----------------~  102 (143)
                      .....+++..++.++.|++.|+.|||+   .+++||||||+||+++ .++.+|++|||.+..                 +
T Consensus       133 ~~~~~l~~~~~~~i~~qi~~aL~~LH~---~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~a  209 (383)
T 3eb0_A          133 RSGRSIPMNLISIYIYQLFRAVGFIHS---LGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRA  209 (383)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCC
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHH---CcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccC
Confidence            234578899999999999999999997   8999999999999997 678999999998752                 1


Q ss_pred             ccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845          103 GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       103 ~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |+.+.. ..++.++||||+||++|+|+++..|+...
T Consensus       210 PE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  245 (383)
T 3eb0_A          210 PELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGE  245 (383)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCC
Confidence            222233 34789999999999999999988877654

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.95  E-value=1.8e-29  Score=172.45  Aligned_cols=128  Identities=26%  Similarity=0.347  Sum_probs=108.7

Q ss_pred             CCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++.+  ...+++||||+++++|.+++...   .+++..+..++.|++.|+.|||+   .+++|+||+
T Consensus        88 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~---~~ivH~Dik  161 (318)
T 3lxp_A           88 RTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLA  161 (318)
T ss_dssp             HHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCS
T ss_pred             HhCCCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCc
Confidence            46789999999999986  45789999999999999999543   47889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcccc---------------------ccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLRLLGS---------------------RILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~~~---------------------~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |+||+++.++.++++|||.+.....                     ......++.++|+||+|+++|+|+++..|+.
T Consensus       162 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~  238 (318)
T 3lxp_A          162 ARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQ  238 (318)
T ss_dssp             GGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             hheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCccc
Confidence            9999999999999999998753321                     1222345678999999999999999766654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.95  E-value=7.7e-29  Score=168.95  Aligned_cols=132  Identities=20%  Similarity=0.273  Sum_probs=109.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        83 l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~---~~i~H~dlkp  158 (319)
T 2y4i_B           83 YRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKS  158 (319)
T ss_dssp             GTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHHH---TTCCCCCCCS
T ss_pred             HhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCh
Confidence            46789999999999999999999999999999999999543 3468889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------------cccccC---------CCCCCCcccchhhhhhhhccc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------------LGSRIL---------PAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------------~~~~~~---------~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      +||+++ ++.++++|||.+..                       +|+...         ...++.++|+||||+++|+|+
T Consensus       159 ~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~  237 (319)
T 2y4i_B          159 KNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELH  237 (319)
T ss_dssp             TTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             hhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHH
Confidence            999998 67899999996432                       111111         234678899999999999999


Q ss_pred             cccCCCCcc
Q 041845          129 MLPMAENEQ  137 (143)
Q Consensus       129 ~~~~~~~~~  137 (143)
                      ++..|+...
T Consensus       238 ~g~~p~~~~  246 (319)
T 2y4i_B          238 AREWPFKTQ  246 (319)
T ss_dssp             HSSCSSSSC
T ss_pred             hCCCCCCCC
Confidence            988777643

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.95  E-value=6.2e-29  Score=176.09  Aligned_cols=123  Identities=22%  Similarity=0.291  Sum_probs=105.2

Q ss_pred             CCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++||||+++++++...     ...++|||++. ++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||
T Consensus        80 ~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~---~givHr  153 (432)
T 3n9x_A           80 NRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHE---SGIIHR  153 (432)
T ss_dssp             HHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHH---TTEECC
T ss_pred             HHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCC
Confidence            467899999999999766     56899999996 5999998543  468899999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhcc----------------------------------------cccc-CCCCCCCcc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRLL----------------------------------------GSRI-LPAKLTEKS  115 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~~----------------------------------------~~~~-~~~~~~~~~  115 (143)
                      ||||+||+++.++.+|++|||.++..                                        |+.+ ....++.++
T Consensus       154 Dlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~  233 (432)
T 3n9x_A          154 DLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSI  233 (432)
T ss_dssp             CCCGGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHH
T ss_pred             CCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCccc
Confidence            99999999999999999999976432                                        2222 345688999


Q ss_pred             cchhhhhhhhccccc
Q 041845          116 DVYSFGVLCARPAML  130 (143)
Q Consensus       116 Di~s~G~~~~~~~~~  130 (143)
                      ||||+||++|||+++
T Consensus       234 DiwSlG~il~ell~g  248 (432)
T 3n9x_A          234 DIWSTGCIFAELLNM  248 (432)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHhc
Confidence            999999999999974

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.95  E-value=5.4e-29  Score=168.78  Aligned_cols=129  Identities=24%  Similarity=0.311  Sum_probs=112.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.++...+++|||+++++|.+++..   ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        75 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~  148 (303)
T 3a7i_A           75 SQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHS---EKKIHRDIKAA  148 (303)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChh
Confidence            457899999999999999999999999999999999843   368889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                  |+......++.++|+||||+++|+|+++..|+..
T Consensus       149 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  221 (303)
T 3a7i_A          149 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSE  221 (303)
T ss_dssp             GEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             eEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCC
Confidence            999999999999999876422                  2223345678899999999999999998877754

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.95  E-value=5e-29  Score=168.09  Aligned_cols=131  Identities=26%  Similarity=0.364  Sum_probs=105.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++ .....+++|||+++++|.+.+... ...+++..+..++.|++.|+.|||+   .+++|+|++|
T Consensus        74 l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH~---~~i~H~Dlkp  148 (289)
T 3og7_A           74 LRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKS  148 (289)
T ss_dssp             HTTCCCTTBCCEEEEE-CSSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCcEEEEEeec-cCCccEEEEEecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHh---CCcccccCcc
Confidence            4678999999999965 556789999999999999998533 4568889999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccC---CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRIL---PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~---~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+...                    |+...   ...++.++|+||+|+++|+|+++..|+..
T Consensus       149 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  227 (289)
T 3og7_A          149 NNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN  227 (289)
T ss_dssp             GGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSS
T ss_pred             ceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccc
Confidence            9999999999999999976421                    11121   34567789999999999999998888764

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.95  E-value=5.3e-29  Score=168.23  Aligned_cols=127  Identities=13%  Similarity=0.061  Sum_probs=109.3

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +|+|++++++++.++...+++|||+ +++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|+||+
T Consensus        64 ~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~Dlkp~NIl  138 (298)
T 1csn_A           64 GCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFL  138 (298)
T ss_dssp             TCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEE
T ss_pred             cCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHh---CCEecCCCCHHHEE
Confidence            7999999999999999999999999 88999999654 3468899999999999999999997   89999999999999


Q ss_pred             EcCCCc-----ccccccchhhcc-------------------------ccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           85 LDENWV-----AKHSRERQLRLL-------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        85 ~~~~~~-----~k~~~~~~~~~~-------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ++.++.     ++++|||.+...                         |+......++.++|+||||+++|+|+++..|+
T Consensus       139 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf  218 (298)
T 1csn_A          139 IGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPW  218 (298)
T ss_dssp             ECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             eccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCc
Confidence            987765     999999976432                         22223445688999999999999999998887


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       219 ~~  220 (298)
T 1csn_A          219 QG  220 (298)
T ss_dssp             SS
T ss_pred             ch
Confidence            65

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=3.4e-29  Score=174.19  Aligned_cols=129  Identities=22%  Similarity=0.288  Sum_probs=109.4

Q ss_pred             CCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++..+.      .+++||||+ +++|.+++..   ..+++..+..++.|++.|+.|||+   .+++|
T Consensus        79 ~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~---~~ivH  151 (367)
T 1cm8_A           79 KHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHA---AGIIH  151 (367)
T ss_dssp             HHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTEEC
T ss_pred             HhCCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCccc
Confidence            4678999999999997653      459999999 6799999854   367889999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc---------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL---------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~---------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||+|+||+++.++.+|++|||.+...               |+.+.. ..++.++|+||+||++|+|+++..|+...
T Consensus       152 ~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  229 (367)
T 1cm8_A          152 RDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS  229 (367)
T ss_dssp             CCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999987532               222223 56889999999999999999988777643

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.95  E-value=1e-28  Score=174.83  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=112.9

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      ..|+||+++++++...+..+++||++. ++|.+.+.......+++..+..++.|++.|+.|||+   .+++||||||+||
T Consensus       156 ~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~NI  231 (429)
T 3kvw_A          156 DNTMNVIHMLENFTFRNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHK---NRIIHCDLKPENI  231 (429)
T ss_dssp             TSCSCBCCEEEEEEETTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---HTEECSCCSGGGE
T ss_pred             cCCcCEEEEEeecccCCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHHHe
Confidence            478899999999999999999999996 599999876665668999999999999999999998   8999999999999


Q ss_pred             EEcCCCc--ccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           84 LLDENWV--AKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        84 l~~~~~~--~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +++.++.  +|++|||.+.               .+|+.+....++.++|||||||++|||+++..|+...
T Consensus       232 Ll~~~~~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          232 LLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             EESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             EEccCCCcceEEeecccceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            9998877  8999999763               2333344567899999999999999999987777643

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.95  E-value=2.9e-29  Score=169.86  Aligned_cols=131  Identities=18%  Similarity=0.259  Sum_probs=111.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        71 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~  146 (302)
T 2j7t_A           71 ATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLHS---KRIIHRDLKAG  146 (302)
T ss_dssp             HHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGG
T ss_pred             hcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhc---CCcccCCCCHH
Confidence            4578999999999999999999999999999999988543 3468899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhh-----------------c-ccccc-----CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLR-----------------L-LGSRI-----LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~-----------------~-~~~~~-----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.++++|||.+.                 + +|+..     ....++.++|+||||+++|+|+++..|+..
T Consensus       147 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  224 (302)
T 2j7t_A          147 NVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHE  224 (302)
T ss_dssp             GEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCcc
Confidence            9999999999999999642                 1 12222     245678899999999999999998877664

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.95  E-value=4.7e-29  Score=171.86  Aligned_cols=134  Identities=19%  Similarity=0.222  Sum_probs=113.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHH------hhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDH------LYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      |+.++||||+++++++.+.+..++||||+++++|.++      +.......+++..+..++.|++.|+.|||+  ..+++
T Consensus        97 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~  174 (348)
T 2pml_X           97 ITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNIC  174 (348)
T ss_dssp             HTTCCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEE
T ss_pred             HHhCCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc--cCCEe
Confidence            3678999999999999999999999999999999998      644335678899999999999999999995  37899


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhc----------------cccccCCC-CCCC-cccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRL----------------LGSRILPA-KLTE-KSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~----------------~~~~~~~~-~~~~-~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+|++|+||+++.++.++++|||.+..                +|+..... .++. ++|+||+|+++|+|+++..|+..
T Consensus       175 H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  254 (348)
T 2pml_X          175 HRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSL  254 (348)
T ss_dssp             CCCCCGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ecCCChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999997643                22223333 3444 89999999999999998777754

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.95  E-value=1.7e-29  Score=170.42  Aligned_cols=129  Identities=27%  Similarity=0.314  Sum_probs=109.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++ ..+..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        73 ~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dikp~  146 (291)
T 1xbb_A           73 QQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAAR  146 (291)
T ss_dssp             HTCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhCCCCCEEEEEEEE-CCCCcEEEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHHh---CCeEcCCCCcc
Confidence            467999999999998 566788999999999999999654  368889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccc---------------------cccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLG---------------------SRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~---------------------~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+....                     +......++.++|+||||+++|+|++ +..|+..
T Consensus       147 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~  223 (291)
T 1xbb_A          147 NVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG  223 (291)
T ss_dssp             GEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             eEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999764321                     11222345678999999999999998 7777654

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=9.2e-29  Score=171.27  Aligned_cols=127  Identities=22%  Similarity=0.135  Sum_probs=108.1

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+.+..++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||||+||+
T Consensus       117 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~---~~ivH~Dlkp~NIl  191 (355)
T 1vzo_A          117 QSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENIL  191 (355)
T ss_dssp             TCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEE
T ss_pred             CCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEE
Confidence            6999999999999999999999999999999998654  367889999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhcc-------------------ccccCC--CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDENWVAKHSRERQLRLL-------------------GSRILP--AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~-------------------~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ++.++.+|++|||.+...                   |+....  ..++.++|+|||||++|+|+++..|+..
T Consensus       192 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~  264 (355)
T 1vzo_A          192 LDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTV  264 (355)
T ss_dssp             ECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred             ECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCcc
Confidence            999999999999976421                   111221  3467899999999999999998877753

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.95  E-value=4.2e-29  Score=176.37  Aligned_cols=129  Identities=23%  Similarity=0.272  Sum_probs=106.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.. +..++||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus       195 ~~l~hpniv~l~~~~~~-~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~ivHrDlkp~  268 (419)
T 3i6u_A          195 KKLNHPCIIKIKNFFDA-EDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPE  268 (419)
T ss_dssp             HHCCCTTBCCCCEEEES-SEEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGG
T ss_pred             HhCCCCCEeeEEEEEec-CceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCccccCCChH
Confidence            46799999999999854 4578999999999999988543  478899999999999999999998   89999999999


Q ss_pred             cEEEcCCC---cccccccchhhcc-----------------ccccC---CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENW---VAKHSRERQLRLL-----------------GSRIL---PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~---~~k~~~~~~~~~~-----------------~~~~~---~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++..+   .+|++|||.+...                 |+.+.   ...++.++|+||+||++|+|+++..|+..
T Consensus       269 NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~  346 (419)
T 3i6u_A          269 NVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE  346 (419)
T ss_dssp             GEEESSSSSSCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             hEEEecCCCcceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence            99997544   5999999977532                 22221   24556789999999999999998877764

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.95  E-value=1.2e-29  Score=170.17  Aligned_cols=131  Identities=26%  Similarity=0.364  Sum_probs=109.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++. .+..+++|||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        63 ~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~i~H~dikp~  138 (279)
T 1qpc_A           63 KQLQHQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAA  138 (279)
T ss_dssp             HHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhCCCcCcceEEEEEc-CCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHh
Confidence            4678999999999886 4568899999999999999954333367889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcccc-------------------ccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLGS-------------------RILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~~-------------------~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+.....                   ......++.++|+||||+++|+|++ +..|+..
T Consensus       139 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~  213 (279)
T 1qpc_A          139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG  213 (279)
T ss_dssp             GEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             hEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcc
Confidence            99999999999999997653221                   1122345778999999999999999 7777654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.95  E-value=4.2e-30  Score=179.16  Aligned_cols=133  Identities=14%  Similarity=0.120  Sum_probs=104.2

Q ss_pred             CCCCCCCCcceee-------EEeecCC-----------------chhhhHhhhcCCCHHHHhhcCCC-----CCCcHHHH
Q 041845            1 LSNLRHRHLVSLI-------GHHVENK-----------------EMILVYDCMARGTLRDHLYNNHK-----PPLQWMWR   51 (143)
Q Consensus         1 L~~l~h~niv~~~-------~~~~~~~-----------------~~~lv~e~~~~~~l~~~~~~~~~-----~~~~~~~~   51 (143)
                      |+.++||||++++       +++.+++                 ..+++|||+ +|+|.+++.....     ..+++..+
T Consensus       130 l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~  208 (377)
T 3byv_A          130 LRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHAR  208 (377)
T ss_dssp             STTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred             ccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHH
Confidence            4667999999998       6555443                 278999999 5799999864321     12234777


Q ss_pred             HHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------ccccCCC--------
Q 041845           52 LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------GSRILPA--------  109 (143)
Q Consensus        52 ~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------~~~~~~~--------  109 (143)
                      ..++.|++.|+.|||+   .+++||||||+||+++.++.+|++|||.+...              |+.+...        
T Consensus       209 ~~i~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~  285 (377)
T 3byv_A          209 LQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRD  285 (377)
T ss_dssp             HHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHC
T ss_pred             HHHHHHHHHHHHHHHh---CCeecCCCCHHHEEEcCCCCEEEEechhheecCCcccCCCCcCccChhhhccccccccccc
Confidence            8899999999999998   89999999999999999999999999986532              2222233        


Q ss_pred             ---CCCCcccchhhhhhhhccccccCCCCcc
Q 041845          110 ---KLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       110 ---~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                         .++.++|||||||++|||+++..|+...
T Consensus       286 ~~~~~~~~~DvwSlG~il~elltg~~Pf~~~  316 (377)
T 3byv_A          286 RRTLMTFSFDAWALGLVIYWIWCADLPITKD  316 (377)
T ss_dssp             CEEECCHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             ccccCChhhhHHHHHHHHHHHHHCCCCCccc
Confidence               6889999999999999999988887643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.95  E-value=6.2e-29  Score=166.38  Aligned_cols=131  Identities=20%  Similarity=0.289  Sum_probs=111.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        66 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~  140 (276)
T 2h6d_A           66 KLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCHR---HMVVHRDLKPE  140 (276)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---HCSSCCCCCGG
T ss_pred             hcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCccCCCChh
Confidence            4678999999999999999999999999999999998654  367889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-----------------ccccCCCCC-CCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRLL-----------------GSRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.++++|||.+...                 |+......+ +.++|+||+|+++|+|+++..|+...
T Consensus       141 Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  214 (276)
T 2h6d_A          141 NVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE  214 (276)
T ss_dssp             GEEECTTSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hEEECCCCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999976532                 222222233 57899999999999999988777643

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.95  E-value=4.6e-29  Score=174.93  Aligned_cols=133  Identities=22%  Similarity=0.231  Sum_probs=106.5

Q ss_pred             CCCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhh--cCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLY--NNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      |+.++||||+++++++....      .+++||||+++ ++.+.+.  ......+++..+..++.|++.|+.|||+   .+
T Consensus        86 l~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~---~~  161 (394)
T 4e7w_A           86 MRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHS---IG  161 (394)
T ss_dssp             HHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             HHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH---CC
Confidence            35689999999999986433      37899999986 4444332  1123578889999999999999999998   89


Q ss_pred             eeecCCCCCcEEEc-CCCcccccccchhhc-----------------cccccCC-CCCCCcccchhhhhhhhccccccCC
Q 041845           73 IIHRDVKSTNILLD-ENWVAKHSRERQLRL-----------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        73 i~h~~l~~~nil~~-~~~~~k~~~~~~~~~-----------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      ++||||||+||+++ .++.+|++|||.+..                 +|+.+.. ..++.++||||+||++|+|+++..|
T Consensus       162 ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~p  241 (394)
T 4e7w_A          162 ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPL  241 (394)
T ss_dssp             EECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999 789999999998742                 2222323 3588999999999999999998888


Q ss_pred             CCcc
Q 041845          134 ENEQ  137 (143)
Q Consensus       134 ~~~~  137 (143)
                      +...
T Consensus       242 f~~~  245 (394)
T 4e7w_A          242 FPGE  245 (394)
T ss_dssp             SCCS
T ss_pred             CCCC
Confidence            7654

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=4.8e-29  Score=172.05  Aligned_cols=130  Identities=25%  Similarity=0.313  Sum_probs=109.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++..++||||+++ ++.+.+... ...+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        67 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~  141 (346)
T 1ua2_A           67 QELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPN  141 (346)
T ss_dssp             HHCCCTTBCCEEEEECCTTCCEEEEECCSE-EHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred             hhCCCCCCCeEEEEEeeCCceEEEEEcCCC-CHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHH
Confidence            457899999999999999999999999986 898888543 3467888899999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccc------------------cccCC-CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLLG------------------SRILP-AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~------------------~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+....                  +.... ..++.++|+||+||++|+|+++..++..
T Consensus       142 Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~  215 (346)
T 1ua2_A          142 NLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPG  215 (346)
T ss_dssp             GEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence            9999999999999999875321                  11222 3467889999999999999997666543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.95  E-value=2.6e-29  Score=168.76  Aligned_cols=129  Identities=25%  Similarity=0.268  Sum_probs=108.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+ +..+++|||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        68 ~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dlkp~  142 (281)
T 3cc6_A           68 KNLDHPHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERN-KNSLKVLTLVLYSLQICKAMAYLES---INCVHRDIAVR  142 (281)
T ss_dssp             HHHCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCSGG
T ss_pred             HhCCCCCcceEEEEEcC-CCCEEEEecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCccc
Confidence            45789999999999865 4568999999999999998543 3467889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~  135 (143)
                      ||+++.++.++++|||.+...                   |+......++.++|+||||+++|+|++ +..|+.
T Consensus       143 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~  216 (281)
T 3cc6_A          143 NILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFF  216 (281)
T ss_dssp             GEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             eEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcc
Confidence            999999999999999976432                   222223567788999999999999998 777764

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.95  E-value=8.3e-29  Score=171.01  Aligned_cols=130  Identities=23%  Similarity=0.252  Sum_probs=108.1

Q ss_pred             CCCCCCCcceeeEEeecC--------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCe
Q 041845            2 SNLRHRHLVSLIGHHVEN--------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTI   73 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~--------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   73 (143)
                      +.++||||+++++++...        +..++||||+++ ++.+.+... ...+++..+..++.|++.|+.|||+   .++
T Consensus        71 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~---~~i  145 (351)
T 3mi9_A           71 QLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIHR---NKI  145 (351)
T ss_dssp             HHCCCTTBCCEEEEEEEC--------CEEEEEEECCSE-EHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHH---TTE
T ss_pred             HhccCCCcccHhheeeccccccccCCceEEEEEeccCC-CHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHH---CCe
Confidence            457899999999999763        468999999975 787777443 3468899999999999999999998   899


Q ss_pred             eecCCCCCcEEEcCCCcccccccchhhc----------------------cccccCC-CCCCCcccchhhhhhhhccccc
Q 041845           74 IHRDVKSTNILLDENWVAKHSRERQLRL----------------------LGSRILP-AKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        74 ~h~~l~~~nil~~~~~~~k~~~~~~~~~----------------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      +|+||+|+||+++.++.+|++|||.+..                      +|+.+.. ..++.++||||+||++|+|+++
T Consensus       146 vH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  225 (351)
T 3mi9_A          146 LHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTR  225 (351)
T ss_dssp             ECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHS
T ss_pred             eCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999997642                      1222222 3578999999999999999998


Q ss_pred             cCCCCc
Q 041845          131 PMAENE  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      ..|+..
T Consensus       226 ~~pf~~  231 (351)
T 3mi9_A          226 SPIMQG  231 (351)
T ss_dssp             SCSCCC
T ss_pred             CCCCCC
Confidence            777654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.95  E-value=3.1e-29  Score=168.37  Aligned_cols=127  Identities=18%  Similarity=0.307  Sum_probs=104.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      +||||+++++++.+++..+++|||+++++|.+++....  ...+++..+..++.|++.|+.|||+   .+++|+||+|+|
T Consensus        69 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dikp~N  145 (289)
T 1x8b_A           69 QHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHS---MSLVHMDIKPSN  145 (289)
T ss_dssp             SCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGG
T ss_pred             CCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHh---CCEeecCCCHHH
Confidence            89999999999999999999999999999999986431  2467899999999999999999998   899999999999


Q ss_pred             EEEcCC-------------------Ccccccccchhhcc--------------ccccCCC-CCCCcccchhhhhhhhccc
Q 041845           83 ILLDEN-------------------WVAKHSRERQLRLL--------------GSRILPA-KLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        83 il~~~~-------------------~~~k~~~~~~~~~~--------------~~~~~~~-~~~~~~Di~s~G~~~~~~~  128 (143)
                      |+++.+                   ..++++|||.+...              |+..... .++.++|||||||++|+|+
T Consensus       146 Il~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~  225 (289)
T 1x8b_A          146 IFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAA  225 (289)
T ss_dssp             EEEC--------------------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHT
T ss_pred             EEEcCCCCCcccccccccccccCCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHh
Confidence            999844                   47899999875422              2222222 4457899999999999999


Q ss_pred             cccCCC
Q 041845          129 MLPMAE  134 (143)
Q Consensus       129 ~~~~~~  134 (143)
                      ++..++
T Consensus       226 ~~~~~~  231 (289)
T 1x8b_A          226 GAEPLP  231 (289)
T ss_dssp             TCCCCC
T ss_pred             cCCCCC
Confidence            875443

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.95  E-value=1.8e-29  Score=171.75  Aligned_cols=129  Identities=26%  Similarity=0.307  Sum_probs=108.3

Q ss_pred             CCCCcceeeEEeecCC-chhhhHhhhcCCCHHHHhhcCCC--------------CCCcHHHHHHHHHHHHHHHhHhhcCC
Q 041845            5 RHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYNNHK--------------PPLQWMWRLKICIGAARGLHYLHTGT   69 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~-~~~lv~e~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~l~~lh~~~   69 (143)
                      +||||+++++++..++ ..+++|||+++++|.+++.....              ..+++..+..++.|++.|+.|||+  
T Consensus        89 ~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~--  166 (316)
T 2xir_A           89 HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS--  166 (316)
T ss_dssp             CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHH--
T ss_pred             cCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHh--
Confidence            6899999999987654 58999999999999999965432              127888999999999999999998  


Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                       .+++|+||+|+||+++.++.++++|||.+...                    |+......++.++|+||+|+++|+|++
T Consensus       167 -~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t  245 (316)
T 2xir_A          167 -RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS  245 (316)
T ss_dssp             -TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             -CCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHh
Confidence             89999999999999999999999999976422                    222234567889999999999999998


Q ss_pred             -ccCCCCc
Q 041845          130 -LPMAENE  136 (143)
Q Consensus       130 -~~~~~~~  136 (143)
                       +..|+..
T Consensus       246 ~g~~p~~~  253 (316)
T 2xir_A          246 LGASPYPG  253 (316)
T ss_dssp             TSCCSSTT
T ss_pred             CCCCCCcc
Confidence             7777654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.95  E-value=7.6e-29  Score=169.43  Aligned_cols=129  Identities=21%  Similarity=0.288  Sum_probs=110.8

Q ss_pred             CCCCCcceeeEEee-----cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            4 LRHRHLVSLIGHHV-----ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         4 l~h~niv~~~~~~~-----~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      ++||||+++++++.     .....+++|||++ ++|.+++.......+++..+..++.|++.|+.|||+   .+++|+|+
T Consensus        71 ~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~gi~H~dl  146 (326)
T 1blx_A           71 FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDL  146 (326)
T ss_dssp             TCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCC
T ss_pred             cCCCCeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCceeccC
Confidence            48999999999987     4567899999997 599999876655568899999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++.++++|||.+...                 |+......++.++|+||||+++|+|+++..|+..
T Consensus       147 kp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  221 (326)
T 1blx_A          147 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG  221 (326)
T ss_dssp             CGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CHHHeEEcCCCCEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999976432                 2223445678899999999999999998877754

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.95  E-value=8.3e-29  Score=168.35  Aligned_cols=132  Identities=22%  Similarity=0.293  Sum_probs=109.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++.+++..+++|||+++++|.+++...  ....++...+..++.|++.|+.|||+   .+++|+||+
T Consensus        87 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~  163 (310)
T 2wqm_A           87 KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHS---RRVMHRDIK  163 (310)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCC
T ss_pred             HhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhh---CCeeCCCCc
Confidence            5679999999999999999999999999999999988532  23567889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||+++.++.++++|||.+...                  |+......++.++|+||||+++|+|+++..|+..
T Consensus       164 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  238 (310)
T 2wqm_A          164 PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  238 (310)
T ss_dssp             GGGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC-
T ss_pred             HHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence            99999999999999999976422                  2223445678899999999999999998777653

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.95  E-value=8.4e-29  Score=172.32  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=107.5

Q ss_pred             CCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++....      ..++||||+++ ++.+.+..    .+++..+..++.|++.|+.|||+   .+++|
T Consensus        79 ~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~---~~ivH  150 (371)
T 2xrw_A           79 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHS---AGIIH  150 (371)
T ss_dssp             HHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCSE-EHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred             HhcCCCCccceEEeeccccccccccceEEEEEcCCC-CHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHH---CCeec
Confidence            4578999999999997654      67999999975 88888742    57888899999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||+|+||+++.++.+|++|||.+..                 +|+......++.++|+||+||++|+|+++..|+...
T Consensus       151 ~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  229 (371)
T 2xrw_A          151 RDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  229 (371)
T ss_dssp             SCCCGGGEEECTTSCEEECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccCCHHHEEEcCCCCEEEEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999997642                 233344557889999999999999999988877643

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.95  E-value=1.4e-29  Score=173.38  Aligned_cols=130  Identities=24%  Similarity=0.318  Sum_probs=108.9

Q ss_pred             CCCCCCCcceeeEEee--cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHV--ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++.  +.+..++||||+++++|.+++.... ..+++..+..++.|++.|+.|||+   .+++|+||+
T Consensus        79 ~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~---~~ivH~Dik  154 (327)
T 3lxl_A           79 KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGS---RRCVHRDLA  154 (327)
T ss_dssp             HTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCS
T ss_pred             HhcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCC
Confidence            5679999999999886  4567899999999999999985432 357899999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhccc---------------------cccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           80 STNILLDENWVAKHSRERQLRLLG---------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~~---------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |+||+++.++.++++|||.+....                     +......++.++|+||+|+++|+|+++..|+.
T Consensus       155 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~  231 (327)
T 3lxl_A          155 ARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSC  231 (327)
T ss_dssp             GGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred             hhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCc
Confidence            999999999999999999875322                     11223345778999999999999999765553

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.95  E-value=4.8e-29  Score=170.48  Aligned_cols=129  Identities=29%  Similarity=0.398  Sum_probs=108.3

Q ss_pred             CCCCcceeeEEeec------CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            5 RHRHLVSLIGHHVE------NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         5 ~h~niv~~~~~~~~------~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +||||+++++++..      .+..+++|||+++++|.+++.......++...+..++.|++.|+.|||+   .+++|+||
T Consensus        79 ~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dl  155 (326)
T 2x7f_A           79 HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQ---HKVIHRDI  155 (326)
T ss_dssp             CSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCC
T ss_pred             CCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---CCccccCC
Confidence            79999999999976      4578999999999999999976544578889999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhcc------------------ccccC-----CCCCCCcccchhhhhhhhccccccCCCC
Q 041845           79 KSTNILLDENWVAKHSRERQLRLL------------------GSRIL-----PAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~-----~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      +|+||+++.++.++++|||.+...                  |+...     ...++.++|+|||||++|+|+++..|+.
T Consensus       156 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  235 (326)
T 2x7f_A          156 KGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLC  235 (326)
T ss_dssp             SGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTT
T ss_pred             cHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999875421                  22222     3457889999999999999999887775


Q ss_pred             c
Q 041845          136 E  136 (143)
Q Consensus       136 ~  136 (143)
                      .
T Consensus       236 ~  236 (326)
T 2x7f_A          236 D  236 (326)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.95  E-value=6.9e-29  Score=169.07  Aligned_cols=129  Identities=21%  Similarity=0.254  Sum_probs=108.2

Q ss_pred             CCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            4 LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         4 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .+||||+++++++.+++..++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+||
T Consensus        68 ~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~Ni  142 (316)
T 2ac3_A           68 QGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHN---KGIAHRDLKPENI  142 (316)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGE
T ss_pred             cCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCceeCCCCHHHE
Confidence            47999999999999999999999999999999998654  367889999999999999999998   8999999999999


Q ss_pred             EEcCCCc---ccccccchhhcc------------------------ccc-cCC-----CCCCCcccchhhhhhhhccccc
Q 041845           84 LLDENWV---AKHSRERQLRLL------------------------GSR-ILP-----AKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        84 l~~~~~~---~k~~~~~~~~~~------------------------~~~-~~~-----~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      +++.++.   +|++|||.+...                        +++ ...     ..++.++||||+||++|+|+++
T Consensus       143 l~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g  222 (316)
T 2ac3_A          143 LCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSG  222 (316)
T ss_dssp             EESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             EEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHC
Confidence            9987765   899999865321                        111 111     3467899999999999999998


Q ss_pred             cCCCCcc
Q 041845          131 PMAENEQ  137 (143)
Q Consensus       131 ~~~~~~~  137 (143)
                      ..|+...
T Consensus       223 ~~pf~~~  229 (316)
T 2ac3_A          223 YPPFVGR  229 (316)
T ss_dssp             SCSCCCC
T ss_pred             CCCCccc
Confidence            8777643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.95  E-value=1.6e-28  Score=167.32  Aligned_cols=131  Identities=22%  Similarity=0.274  Sum_probs=109.1

Q ss_pred             CCCCCCCcceeeEEee----cCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHV----ENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++.    .....++++||+++++|.+++...  ....+++..+..++.|++.|+.|||+   .+++|
T Consensus        81 ~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~---~~ivH  157 (317)
T 2buj_A           81 RLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAH  157 (317)
T ss_dssp             HTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEEC
T ss_pred             hhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh---CCccc
Confidence            4679999999999987    344788999999999999988542  34578899999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhh--------------------------cccccc-CCC---CCCCcccchhhhhhhh
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLR--------------------------LLGSRI-LPA---KLTEKSDVYSFGVLCA  125 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~--------------------------~~~~~~-~~~---~~~~~~Di~s~G~~~~  125 (143)
                      +||+|+||+++.++.+++.|||.+.                          +.+++. ...   .++.++||||||+++|
T Consensus       158 ~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~  237 (317)
T 2buj_A          158 RDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLY  237 (317)
T ss_dssp             CCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHH
Confidence            9999999999999999999998432                          222222 222   2578999999999999


Q ss_pred             ccccccCCCC
Q 041845          126 RPAMLPMAEN  135 (143)
Q Consensus       126 ~~~~~~~~~~  135 (143)
                      +|+++..|+.
T Consensus       238 el~~g~~p~~  247 (317)
T 2buj_A          238 AMMFGEGPYD  247 (317)
T ss_dssp             HHHHSSCTTH
T ss_pred             HHHhCCCChh
Confidence            9999887764

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.95  E-value=5.2e-29  Score=175.09  Aligned_cols=131  Identities=23%  Similarity=0.311  Sum_probs=105.4

Q ss_pred             CCCCCCCcceeeEEee--cCCchhhhHhhhcCCCHHHHhhcC-------CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            2 SNLRHRHLVSLIGHHV--ENKEMILVYDCMARGTLRDHLYNN-------HKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      +.++||||+++++++.  .+...++||||+.+ +|.+.+...       ....+++..++.++.|++.|+.|||+   .+
T Consensus        73 ~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~---~~  148 (405)
T 3rgf_A           73 RELKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA---NW  148 (405)
T ss_dssp             HHCCCTTBCCCCEEEEETTTTEEEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             HhcCCCCeeeEeeEEecCCCCeEEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            4678999999999995  46789999999975 888777421       12347889999999999999999998   89


Q ss_pred             eeecCCCCCcEEE----cCCCcccccccchhhcc---------------------ccccCC-CCCCCcccchhhhhhhhc
Q 041845           73 IIHRDVKSTNILL----DENWVAKHSRERQLRLL---------------------GSRILP-AKLTEKSDVYSFGVLCAR  126 (143)
Q Consensus        73 i~h~~l~~~nil~----~~~~~~k~~~~~~~~~~---------------------~~~~~~-~~~~~~~Di~s~G~~~~~  126 (143)
                      ++||||||+||++    +..+.+|++|||.+...                     |+.+.. ..++.++||||+||++|+
T Consensus       149 ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~e  228 (405)
T 3rgf_A          149 VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAE  228 (405)
T ss_dssp             CCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred             EeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHH
Confidence            9999999999999    66789999999977422                     222333 347889999999999999


Q ss_pred             cccccCCCCc
Q 041845          127 PAMLPMAENE  136 (143)
Q Consensus       127 ~~~~~~~~~~  136 (143)
                      |+++..|+..
T Consensus       229 ll~g~~pf~~  238 (405)
T 3rgf_A          229 LLTSEPIFHC  238 (405)
T ss_dssp             HHHSSCTTCC
T ss_pred             HHhCCCCCCC
Confidence            9998877753

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.2e-29  Score=178.03  Aligned_cols=131  Identities=24%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             CCCCCCCcceeeEEeecCC--chhhhHhhhcCCCHHHHhhcCC-CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            2 SNLRHRHLVSLIGHHVENK--EMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~--~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +.++||||+++++++....  ..++||||+++++|.+++.... ...+++..+..++.|++.|+.|||+   .+++||||
T Consensus        62 ~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~ivH~Dl  138 (396)
T 4eut_A           62 KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNI  138 (396)
T ss_dssp             HHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCC
T ss_pred             HhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCc
Confidence            4678999999999988654  6799999999999999996432 2238899999999999999999998   89999999


Q ss_pred             CCCcEEE----cCCCcccccccchhhccccc-----------------cCC--------CCCCCcccchhhhhhhhcccc
Q 041845           79 KSTNILL----DENWVAKHSRERQLRLLGSR-----------------ILP--------AKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        79 ~~~nil~----~~~~~~k~~~~~~~~~~~~~-----------------~~~--------~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      ||+||++    +..+.+|++|||.+......                 +..        ..++.++|+|||||++|+|++
T Consensus       139 kp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~t  218 (396)
T 4eut_A          139 KPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT  218 (396)
T ss_dssp             CGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHH
Confidence            9999999    67778999999987532211                 100        234567999999999999999


Q ss_pred             ccCCCC
Q 041845          130 LPMAEN  135 (143)
Q Consensus       130 ~~~~~~  135 (143)
                      +..|+.
T Consensus       219 g~~Pf~  224 (396)
T 4eut_A          219 GSLPFR  224 (396)
T ss_dssp             SSCSEE
T ss_pred             CCCCCC
Confidence            877764

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.95  E-value=3.5e-29  Score=167.85  Aligned_cols=132  Identities=22%  Similarity=0.320  Sum_probs=109.5

Q ss_pred             CCCCCCCcceeeEEee--cCCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC-----
Q 041845            2 SNLRHRHLVSLIGHHV--ENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGTRNT-----   72 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~-----   72 (143)
                      ++++||||+++++++.  .+...+++|||+++++|.+++...  ....+++..+..++.|++.|+.|||+   .+     
T Consensus        60 ~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~~~~~  136 (279)
T 2w5a_A           60 RELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR---RSDGGHT  136 (279)
T ss_dssp             HHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HC-----
T ss_pred             HhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc---ccCCCCe
Confidence            4578999999999875  456789999999999999998543  23458899999999999999999997   77     


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhcc------------------ccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRLL------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~~------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ++|+||+|+||+++.++.++++|||.+...                  |+......++.++|+||||+++|+|+++..|+
T Consensus       137 ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~  216 (279)
T 2w5a_A          137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPF  216 (279)
T ss_dssp             -CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             eEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999999976432                  22233456788999999999999999987776


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       217 ~~  218 (279)
T 2w5a_A          217 TA  218 (279)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.95  E-value=1e-28  Score=166.34  Aligned_cols=131  Identities=21%  Similarity=0.277  Sum_probs=106.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-CeeecCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLHYLHTGTRN-TIIHRDV   78 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-~i~h~~l   78 (143)
                      +.++||||+++++++.+++..++||||+++ ++.+.+..  .....+++..+..++.|++.|+.|||+   . +++|+|+
T Consensus        61 ~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dl  136 (290)
T 3fme_A           61 RTVDCPFTVTFYGALFREGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHS---KLSVIHRDV  136 (290)
T ss_dssp             TTCCCTTBCCEEEEEECSSSEEEEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH---HSCCCCCCC
T ss_pred             HhCCCCeEEEEeeeeeccCCEEEEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCeecCCC
Confidence            567999999999999999999999999975 88777643  134578899999999999999999997   7 9999999


Q ss_pred             CCCcEEEcCCCcccccccchhhc-----------------ccccc----CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRL-----------------LGSRI----LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++.++++|||.+..                 +|+.+    ....++.++|+||+|+++|+|+++..|+..
T Consensus       137 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  215 (290)
T 3fme_A          137 KPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDS  215 (290)
T ss_dssp             SGGGCEECTTCCEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             CHHHEEECCCCCEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccc
Confidence            99999999999999999997642                 12221    344577899999999999999998888763

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.95  E-value=2.8e-28  Score=166.66  Aligned_cols=129  Identities=22%  Similarity=0.245  Sum_probs=108.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++..+. .++||||+++++|.+.+..  ...+++.....++.|++.|+.|||+   .+++|+||+|+
T Consensus        70 ~~l~h~~i~~~~~~~~~~~-~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~dlkp~  143 (322)
T 2ycf_A           70 KKLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLLAVQYLHE---NGIIHRDLKPE  143 (322)
T ss_dssp             HHCCCTTBCCEEEEEESSS-EEEEEECCTTEETHHHHST--TCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCCceEeeEEcCCc-eEEEEecCCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCCHH
Confidence            4578999999999987654 8999999999999998854  3478889999999999999999998   89999999999


Q ss_pred             cEEEcCCCc---ccccccchhhcc----------------cccc----CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWV---AKHSRERQLRLL----------------GSRI----LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~---~k~~~~~~~~~~----------------~~~~----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.   ++++|||.+...                +++.    ....++.++|+|||||++|+|+++..|+..
T Consensus       144 NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  221 (322)
T 2ycf_A          144 NVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE  221 (322)
T ss_dssp             GEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred             HEEEecCCCCCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence            999987654   999999976432                1121    245678899999999999999998877754

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.95  E-value=6.7e-29  Score=183.47  Aligned_cols=130  Identities=25%  Similarity=0.301  Sum_probs=109.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++. .+..++||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||+|+
T Consensus       446 ~~l~HpnIv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~---~givHrDikp~  520 (656)
T 2j0j_A          446 RQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLES---KRFVHRDIAAR  520 (656)
T ss_dssp             HHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             HhCCCCCCCeEEEEEe-cCceEEEEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHh---CCccccccchH
Confidence            4578999999999984 56689999999999999999643 3467889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+...                   |+......++.++|||||||++|||++ +..|+..
T Consensus       521 NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~  595 (656)
T 2j0j_A          521 NVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG  595 (656)
T ss_dssp             GEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             hEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999976432                   222233567889999999999999997 6666653

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.95  E-value=1.3e-28  Score=171.13  Aligned_cols=127  Identities=27%  Similarity=0.301  Sum_probs=109.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++..++..++||||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+||+
T Consensus       158 ~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~---~gi~H~Dlkp~NIl  232 (365)
T 2y7j_A          158 GHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHA---NNIVHRDLKPENIL  232 (365)
T ss_dssp             TCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEE
T ss_pred             CCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCHHHEE
Confidence            7999999999999999999999999999999998643  367889999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhccc-----------------cccC------CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDENWVAKHSRERQLRLLG-----------------SRIL------PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~~-----------------~~~~------~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ++.++.++++|||......                 +.+.      ...++.++|+|||||++|+|+++..|+..
T Consensus       233 ~~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~  307 (365)
T 2y7j_A          233 LDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWH  307 (365)
T ss_dssp             ECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ECCCCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCC
Confidence            9999999999999764221                 1111      22477899999999999999998887754

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.8e-29  Score=174.55  Aligned_cols=122  Identities=19%  Similarity=0.126  Sum_probs=102.8

Q ss_pred             eeEEeec-CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCC-
Q 041845           12 LIGHHVE-NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENW-   89 (143)
Q Consensus        12 ~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~-   89 (143)
                      +++++.. +...++||||+ +++|.+++.......+++..+..++.|++.|+.|||+   .+++|+||+|+||+++.++ 
T Consensus       122 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dikp~NIl~~~~~~  197 (352)
T 2jii_A          122 CMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHE---NEYVHGNVTAENIFVDPEDQ  197 (352)
T ss_dssp             CCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCGGGEEEETTEE
T ss_pred             hhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHh---CCccCCCCCHHHEEEcCCCC
Confidence            6777765 67889999999 8899999976544578999999999999999999998   8999999999999999988 


Q ss_pred             -cccccccchhhcc-------------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           90 -VAKHSRERQLRLL-------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        90 -~~k~~~~~~~~~~-------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                       .++++|||.+...                         |+......++.++|+|||||++|+|+++..|+...
T Consensus       198 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  271 (352)
T 2jii_A          198 SQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC  271 (352)
T ss_dssp             EEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred             ceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence             8999999987422                         12223346778999999999999999988887654

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.95  E-value=1e-28  Score=169.96  Aligned_cols=131  Identities=19%  Similarity=0.251  Sum_probs=106.2

Q ss_pred             CCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            3 NLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      .++||||+++++++..    +...++||||+++++|.+++.......+++..+..++.|++.|+.|||+   .+++|+||
T Consensus        78 ~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~---~~ivH~dl  154 (336)
T 3fhr_A           78 ASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHS---HNIAHRDV  154 (336)
T ss_dssp             HTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             hcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCC
Confidence            4589999999999875    4558999999999999999976655678999999999999999999998   89999999


Q ss_pred             CCCcEEEcCC---Ccccccccchhhc----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDEN---WVAKHSRERQLRL----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~---~~~k~~~~~~~~~----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.+   +.++++|||.+..                +|+......++.++|+||+|+++|+|+++..|+..
T Consensus       155 kp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  231 (336)
T 3fhr_A          155 KPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYS  231 (336)
T ss_dssp             SGGGEEESCSSTTCCEEECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             CHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            9999999864   4589999997642                22333344567789999999999999998877743

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.95  E-value=1.1e-28  Score=170.90  Aligned_cols=131  Identities=20%  Similarity=0.207  Sum_probs=108.4

Q ss_pred             CCCCCCCcceeeEEeec-----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVE-----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~-----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      ++++||||+++++++..     ....++||||++ +++.+.+... ...+++..+..++.|++.|+.|||+   .+++|+
T Consensus        84 ~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~  158 (362)
T 3pg1_A           84 NHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLHE---AGVVHR  158 (362)
T ss_dssp             HHCCCTTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCC
T ss_pred             HhCCCcCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHH---CcCEec
Confidence            45789999999999853     335799999997 5888888543 4468899999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhh-----------------ccccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLR-----------------LLGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+|+||+++.++.++++|||.+.                 .+|+.... ..++.++|+||+||++|+|+++..|+...
T Consensus       159 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  237 (362)
T 3pg1_A          159 DLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS  237 (362)
T ss_dssp             CCCGGGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCChHHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999764                 22232333 56789999999999999999988887653

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.95  E-value=1.5e-28  Score=173.56  Aligned_cols=133  Identities=24%  Similarity=0.238  Sum_probs=105.7

Q ss_pred             CCCCCCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      |+.++||||+++++++...      ..+++||||+++ ++.+.+..  .....+++..+..++.|++.|+.|||+   .+
T Consensus       101 l~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~---~~  176 (420)
T 1j1b_A          101 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FG  176 (420)
T ss_dssp             HHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TT
T ss_pred             HHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHH---CC
Confidence            3578999999999998532      236799999976 66665532  234578889999999999999999997   89


Q ss_pred             eeecCCCCCcEEEcCC-Ccccccccchhhc-----------------cccccCC-CCCCCcccchhhhhhhhccccccCC
Q 041845           73 IIHRDVKSTNILLDEN-WVAKHSRERQLRL-----------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        73 i~h~~l~~~nil~~~~-~~~k~~~~~~~~~-----------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      ++||||||+|||++.+ +.+|++|||.+..                 +|+.+.. ..++.++||||+||++|||+++..|
T Consensus       177 ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~p  256 (420)
T 1j1b_A          177 ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI  256 (420)
T ss_dssp             EECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCC
Confidence            9999999999999955 5689999998752                 1222223 3678999999999999999998877


Q ss_pred             CCcc
Q 041845          134 ENEQ  137 (143)
Q Consensus       134 ~~~~  137 (143)
                      +...
T Consensus       257 f~~~  260 (420)
T 1j1b_A          257 FPGD  260 (420)
T ss_dssp             SCCS
T ss_pred             CCCC
Confidence            7643

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.94  E-value=9e-29  Score=166.90  Aligned_cols=132  Identities=24%  Similarity=0.267  Sum_probs=110.4

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC-CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.++||||+++++++.+.+..+++|||+++++|.+++.... ...+++..+..++.|++.|+.|||+   .+++|+||+|
T Consensus        74 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p  150 (295)
T 2clq_A           74 KHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD---NQIVHRDIKG  150 (295)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHh---CCEEccCCCh
Confidence            46799999999999999999999999999999999986542 2355678888999999999999998   8999999999


Q ss_pred             CcEEEcC-CCcccccccchhhcccc------------------ccCC--CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDE-NWVAKHSRERQLRLLGS------------------RILP--AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~-~~~~k~~~~~~~~~~~~------------------~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++. ++.++++|||.+.....                  ....  ..++.++|+||||+++|+|+++..|+..
T Consensus       151 ~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  227 (295)
T 2clq_A          151 DNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYE  227 (295)
T ss_dssp             GGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGG
T ss_pred             hhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccC
Confidence            9999987 88999999997643211                  1111  1267889999999999999998877753

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.94  E-value=3.3e-28  Score=164.91  Aligned_cols=133  Identities=23%  Similarity=0.243  Sum_probs=107.4

Q ss_pred             CCCCCCCCcceeeEEee--cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            1 LSNLRHRHLVSLIGHHV--ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      |+.++||||+++++++.  ++...+++|||++++ +.+.+.......+++..+..++.|++.|+.|||+   .+++|+||
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~---~~i~H~dl  135 (305)
T 2wtk_C           60 LRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHS---QGIVHKDI  135 (305)
T ss_dssp             HTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCC
T ss_pred             HHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHH---CCeeecCC
Confidence            46789999999999984  456789999999875 7777765555678899999999999999999998   89999999


Q ss_pred             CCCcEEEcCCCcccccccchhhccc--------------------cccCC--CCCCCcccchhhhhhhhccccccCCCCc
Q 041845           79 KSTNILLDENWVAKHSRERQLRLLG--------------------SRILP--AKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        79 ~~~nil~~~~~~~k~~~~~~~~~~~--------------------~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|+||+++.++.++++|||.+....                    +....  ..++.++|+||+|+++|+|+++..|+..
T Consensus       136 kp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  215 (305)
T 2wtk_C          136 KPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEG  215 (305)
T ss_dssp             SGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999764321                    11111  1235689999999999999998877764


Q ss_pred             c
Q 041845          137 Q  137 (143)
Q Consensus       137 ~  137 (143)
                      .
T Consensus       216 ~  216 (305)
T 2wtk_C          216 D  216 (305)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.94  E-value=5.3e-29  Score=170.54  Aligned_cols=129  Identities=26%  Similarity=0.378  Sum_probs=107.0

Q ss_pred             CCCCCCCcceeeEEeecCC--chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            2 SNLRHRHLVSLIGHHVENK--EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~--~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +.++||||+++++++...+  ..+++|||+++++|.+++... ...+++..+..++.|++.|+.+||+   .+++|+||+
T Consensus        97 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dik  172 (326)
T 2w1i_A           97 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLA  172 (326)
T ss_dssp             HTCCCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCC
T ss_pred             HhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCC
Confidence            5679999999999987543  789999999999999999654 3468889999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcccc---------------------ccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           80 STNILLDENWVAKHSRERQLRLLGS---------------------RILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~~~---------------------~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      |+||+++.++.++++|||.+.....                     ......++.++|+||||+++|+|+++..++
T Consensus       173 p~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~  248 (326)
T 2w1i_A          173 TRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKS  248 (326)
T ss_dssp             GGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             cceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999997653321                     112234567899999999999999975544

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.94  E-value=3.6e-28  Score=169.78  Aligned_cols=128  Identities=21%  Similarity=0.246  Sum_probs=107.1

Q ss_pred             CCCCcceeeEEee----cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-CeeecCCC
Q 041845            5 RHRHLVSLIGHHV----ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRN-TIIHRDVK   79 (143)
Q Consensus         5 ~h~niv~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-~i~h~~l~   79 (143)
                      .|+||+++++++.    +....++||||+ ++++.+.+.......+++..+..++.|++.|+.|||+   + +++|||||
T Consensus        99 ~~~~iv~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~givHrDik  174 (397)
T 1wak_A           99 NREMVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHT---KCRIIHTDIK  174 (397)
T ss_dssp             GGGGBCCEEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECCCCS
T ss_pred             CcceeeeeecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH---hCCEecCCCC
Confidence            4889999999987    556799999999 5577777755544678999999999999999999998   7 99999999


Q ss_pred             CCcEEEcCCC-------------------------------------------------cccccccchhhc---------
Q 041845           80 STNILLDENW-------------------------------------------------VAKHSRERQLRL---------  101 (143)
Q Consensus        80 ~~nil~~~~~-------------------------------------------------~~k~~~~~~~~~---------  101 (143)
                      |+||+++.++                                                 .++++|||.+..         
T Consensus       175 p~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~  254 (397)
T 1wak_A          175 PENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDI  254 (397)
T ss_dssp             GGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCC
T ss_pred             HHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCC
Confidence            9999998765                                                 789999997642         


Q ss_pred             ------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845          102 ------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       102 ------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                            +|+.+....++.++|||||||++|+|+++..|+..
T Consensus       255 gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  295 (397)
T 1wak_A          255 QTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEP  295 (397)
T ss_dssp             SCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCC
Confidence                  23334455688999999999999999998887753

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.94  E-value=2.4e-28  Score=178.00  Aligned_cols=120  Identities=16%  Similarity=0.073  Sum_probs=87.6

Q ss_pred             CCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +++ .|+||++++++++++...||||||++|++|.+.+.++.  .++..   .++.|++.|+.|+|+   ++|+||||||
T Consensus       296 ~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~ylH~---~GIIHRDIKP  367 (569)
T 4azs_A          296 TQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAALEK---QGFWHDDVRP  367 (569)
T ss_dssp             HSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHHHH---TTCEESCCCG
T ss_pred             HhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHHHH---CCceeccCch
Confidence            456 79999999999999999999999999999999996543  45543   478999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-----------------ccccCCCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-----------------GSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +|||++.++.+|++|||+++..                 .++...+.+..++|+||+|++.+++++
T Consensus       368 eNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~~~~~~d~~s~g~~~~~l~~  433 (569)
T 4azs_A          368 WNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAENKSWNGFWRSAPVHPFNLPQ  433 (569)
T ss_dssp             GGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC-----------------CCCCT
T ss_pred             HhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCCCCCCcccccccccchhhhcc
Confidence            9999999999999999986532                 223344566778999999999888765

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.94  E-value=3.9e-28  Score=166.88  Aligned_cols=122  Identities=26%  Similarity=0.343  Sum_probs=102.8

Q ss_pred             CCCCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhh--------cCCC
Q 041845            3 NLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLH--------TGTR   70 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh--------~~~~   70 (143)
                      .++||||+++++++....    ..+++|||+++++|.+++.+.   .+++..+..++.|++.|+.|||        +   
T Consensus        92 ~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~---  165 (342)
T 1b6c_B           92 MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGK---  165 (342)
T ss_dssp             CCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB---
T ss_pred             hcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhccc---
Confidence            378999999999998765    789999999999999999543   5788999999999999999999        6   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcccc---------------------c-cCCC------CCCCcccchhhhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLLGS---------------------R-ILPA------KLTEKSDVYSFGV  122 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~~---------------------~-~~~~------~~~~~~Di~s~G~  122 (143)
                      .+++|+||+|+||+++.++.++++|||.+.....                     + ....      .++.++|+|||||
T Consensus       166 ~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~  245 (342)
T 1b6c_B          166 PAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGL  245 (342)
T ss_dssp             CEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHH
Confidence            8999999999999999999999999997642211                     1 1111      1225799999999


Q ss_pred             hhhccccc
Q 041845          123 LCARPAML  130 (143)
Q Consensus       123 ~~~~~~~~  130 (143)
                      ++|+|+++
T Consensus       246 il~el~tg  253 (342)
T 1b6c_B          246 VFWEIARR  253 (342)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            99999997

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.94  E-value=1.2e-28  Score=171.38  Aligned_cols=129  Identities=21%  Similarity=0.268  Sum_probs=101.2

Q ss_pred             CCCCCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++...      ...++++|++ +++|.+++..   ..+++..+..++.|++.|+.|||+   .+++|
T Consensus        83 ~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~---~givH  155 (367)
T 2fst_X           83 KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHS---ADIIH  155 (367)
T ss_dssp             HHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred             HhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeee
Confidence            467899999999998654      4578999999 5699888743   368889999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc---------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL---------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||+|+||+++.++.+|++|||.+..               +|+.+.. ..++.++|+||+||++|+|+++..|+...
T Consensus       156 ~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  233 (367)
T 2fst_X          156 RDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  233 (367)
T ss_dssp             CCCCGGGEEECTTCCEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999998743               2222233 56789999999999999999988777643

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.94  E-value=5.4e-29  Score=167.72  Aligned_cols=130  Identities=24%  Similarity=0.291  Sum_probs=108.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.++. .++++|++++++|.+.+... ...+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        76 ~~l~h~~i~~~~~~~~~~~-~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~---~~i~H~dikp~  150 (291)
T 1u46_A           76 HSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAAR  150 (291)
T ss_dssp             HHCCCTTBCCEEEEECSSS-CEEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGG
T ss_pred             HhCCCCCcccEEEEEccCC-ceeeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHHh---CCcccCCCchh
Confidence            4578999999999997655 88999999999999998643 2457889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.++++|||.+...                     |+......++.++|+||||+++|+|++ +..|+..
T Consensus       151 Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~  227 (291)
T 1u46_A          151 NLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG  227 (291)
T ss_dssp             GEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             eEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            999999999999999976432                     111223345778999999999999998 7777754

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.94  E-value=3.2e-28  Score=164.50  Aligned_cols=125  Identities=24%  Similarity=0.332  Sum_probs=104.6

Q ss_pred             CCCCCCCCcceeeEEeec-------------CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            1 LSNLRHRHLVSLIGHHVE-------------NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~-------------~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      |+.++||||+++++++.+             .+..+++|||+++++|.+++... ...++...+..++.|++.|+.|||+
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~  134 (303)
T 1zy4_A           56 LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSE-NLNQQRDEYWRLFRQILEALSYIHS  134 (303)
T ss_dssp             HTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHS-CGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhcc-ccccchHHHHHHHHHHHHHHHHHHh
Confidence            467899999999998864             35678999999999999999643 3456778889999999999999998


Q ss_pred             CCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------------------ccccCC-CCCCCc
Q 041845           68 GTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------------------GSRILP-AKLTEK  114 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------------------~~~~~~-~~~~~~  114 (143)
                         .+++|+|++|+||+++.++.++++|||.+...                                |+.... ..++.+
T Consensus       135 ---~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  211 (303)
T 1zy4_A          135 ---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEK  211 (303)
T ss_dssp             ---TTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTH
T ss_pred             ---CCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcch
Confidence               89999999999999999999999999976422                                111222 357889


Q ss_pred             ccchhhhhhhhcccc
Q 041845          115 SDVYSFGVLCARPAM  129 (143)
Q Consensus       115 ~Di~s~G~~~~~~~~  129 (143)
                      +|+||+||++|+|++
T Consensus       212 ~Di~slG~il~~l~~  226 (303)
T 1zy4_A          212 IDMYSLGIIFFEMIY  226 (303)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHh
Confidence            999999999999998

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.94  E-value=5.9e-28  Score=162.64  Aligned_cols=130  Identities=22%  Similarity=0.263  Sum_probs=110.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+++..++++|++++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+
T Consensus        76 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~---~~i~H~dl~p~  150 (287)
T 2wei_A           76 KKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHK---HNIVHRDLKPE  150 (287)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGG
T ss_pred             HhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeccCCChh
Confidence            5689999999999999999999999999999999888543  367889999999999999999998   89999999999


Q ss_pred             cEEEcCC---Ccccccccchhhcc----------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDEN---WVAKHSRERQLRLL----------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~---~~~k~~~~~~~~~~----------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.+   +.++++|||.+...                +++.....++.++|+||+|+++|+|+++..|+..
T Consensus       151 NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  224 (287)
T 2wei_A          151 NILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYG  224 (287)
T ss_dssp             GEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             hEEEecCCCcccEEEeccCcceeecCCCccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCC
Confidence            9999754   46899999976432                2223334578899999999999999998777654

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.94  E-value=4.4e-28  Score=165.95  Aligned_cols=125  Identities=18%  Similarity=0.205  Sum_probs=106.1

Q ss_pred             CCC-CCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            3 NLR-HRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         3 ~l~-h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      .++ ||||+++++++.+  ....+++|||+++++|.+.+.     .++...+..++.|++.|+.|||+   .+++|+||+
T Consensus        86 ~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dik  157 (330)
T 3nsz_A           86 NLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHS---MGIMHRDVK  157 (330)
T ss_dssp             HHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred             HcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCC
Confidence            454 9999999999987  567899999999999999883     36788899999999999999998   899999999


Q ss_pred             CCcEEEcCCC-cccccccchhhcc-----------------ccccCC-CCCCCcccchhhhhhhhccccccCCCC
Q 041845           80 STNILLDENW-VAKHSRERQLRLL-----------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        80 ~~nil~~~~~-~~k~~~~~~~~~~-----------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |+||+++.++ .++++|||.+...                 |+.... ..++.++||||+||++|+|+++..|+.
T Consensus       158 p~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~  232 (330)
T 3nsz_A          158 PHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFF  232 (330)
T ss_dssp             GGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred             HHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcc
Confidence            9999999766 8999999987532                 222222 467889999999999999999887773

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.94  E-value=6.3e-28  Score=165.15  Aligned_cols=131  Identities=21%  Similarity=0.200  Sum_probs=107.3

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhc---CCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-CeeecC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN---NHKPPLQWMWRLKICIGAARGLHYLHTGTRN-TIIHRD   77 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-~i~h~~   77 (143)
                      +.++||||+++++++.+++..+++|||+++ +|.+.+..   .....+++..+..++.|++.|+.|||+   . +++|+|
T Consensus        76 ~~~~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~---~~~ivH~d  151 (327)
T 3aln_A           76 RSSDCPYIVQFYGALFREGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKE---NLKIIHRD  151 (327)
T ss_dssp             SSCCCTTBCCEEEEEECSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHH---HHSCCCSC
T ss_pred             HcCCCCcEeeeeeEEEeCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhc---cCCEeECC
Confidence            567999999999999999999999999975 88777642   234577889999999999999999997   7 999999


Q ss_pred             CCCCcEEEcCCCcccccccchhhc-----------------ccccc----CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           78 VKSTNILLDENWVAKHSRERQLRL-----------------LGSRI----LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        78 l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+|+||+++.++.+|++|||.+..                 +|+..    ....++.++|+||||+++|+|+++..|+..
T Consensus       152 lkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  231 (327)
T 3aln_A          152 IKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPK  231 (327)
T ss_dssp             CCGGGEEEETTTEEEECCCSSSCC------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSC
T ss_pred             CCHHHEEEcCCCCEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            999999999999999999997632                 22222    234578899999999999999998877754

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.94  E-value=5.9e-28  Score=163.18  Aligned_cols=127  Identities=26%  Similarity=0.226  Sum_probs=109.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      +||||+++++++.+++..+++|||+++++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+||+
T Consensus        82 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dl~p~Nil  156 (298)
T 1phk_A           82 GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENIL  156 (298)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEE
T ss_pred             CCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCcceEE
Confidence            4999999999999999999999999999999998653  367889999999999999999998   89999999999999


Q ss_pred             EcCCCcccccccchhhccc-----------------ccc------CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           85 LDENWVAKHSRERQLRLLG-----------------SRI------LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        85 ~~~~~~~k~~~~~~~~~~~-----------------~~~------~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ++.++.++++|||.+....                 +..      ....++.++|+||+|+++|+|+++..|+..
T Consensus       157 ~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  231 (298)
T 1phk_A          157 LDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH  231 (298)
T ss_dssp             ECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             EcCCCcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcC
Confidence            9999999999999764321                 111      134567899999999999999998777643

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.94  E-value=6.9e-29  Score=172.69  Aligned_cols=112  Identities=11%  Similarity=0.028  Sum_probs=90.8

Q ss_pred             chhhhHhhhcCCCHHHHhhcCCCCCCcHHHH------HHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCccccc
Q 041845           21 EMILVYDCMARGTLRDHLYNNHKPPLQWMWR------LKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS   94 (143)
Q Consensus        21 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~   94 (143)
                      ..++||||++ ++|.+++.... ..+.....      ..++.|++.|+.|||+   .+++||||||+||+++.++.+|++
T Consensus       162 ~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~---~~ivHrDikp~NIll~~~~~~kL~  236 (371)
T 3q60_A          162 NYLLLMPAAS-VDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQS---KGLVHGHFTPDNLFIMPDGRLMLG  236 (371)
T ss_dssp             EEEEEECCCS-EEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHH---TTEEETTCSGGGEEECTTSCEEEC
T ss_pred             eEEEEecCCC-CCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHH---CCCccCcCCHHHEEECCCCCEEEE
Confidence            3799999998 79999996432 12344444      6677999999999998   899999999999999999999999


Q ss_pred             ccchhhcc---------------ccccCC--CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           95 RERQLRLL---------------GSRILP--AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        95 ~~~~~~~~---------------~~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||.+...               |+.+..  ..++.++|||||||++|+|+++..|+...
T Consensus       237 DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  296 (371)
T 3q60_A          237 DVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLV  296 (371)
T ss_dssp             CGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBC
T ss_pred             ecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCc
Confidence            99986422               222333  46789999999999999999988887755

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.3e-28  Score=167.43  Aligned_cols=130  Identities=23%  Similarity=0.309  Sum_probs=104.2

Q ss_pred             CC-CCCCcceeeEEee--------cCCchhhhHhhhcCCCHHHHhhcC-CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            3 NL-RHRHLVSLIGHHV--------ENKEMILVYDCMARGTLRDHLYNN-HKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~--------~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      ++ +||||+++++++.        .....+++|||+. |+|.+++... ....+++..++.++.|++.|+.|||+   .+
T Consensus        81 ~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~---~~  156 (337)
T 3ll6_A           81 KLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR---QK  156 (337)
T ss_dssp             HHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHT---SS
T ss_pred             HhccCCChhhccccccccccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh---CC
Confidence            35 4999999999984        3345789999996 6998887532 33468899999999999999999997   77


Q ss_pred             --eeecCCCCCcEEEcCCCcccccccchhhcc------------------------------cccc---CCCCCCCcccc
Q 041845           73 --IIHRDVKSTNILLDENWVAKHSRERQLRLL------------------------------GSRI---LPAKLTEKSDV  117 (143)
Q Consensus        73 --i~h~~l~~~nil~~~~~~~k~~~~~~~~~~------------------------------~~~~---~~~~~~~~~Di  117 (143)
                        ++|+||+|+||+++.++.++++|||.+...                              |+.+   ....++.++||
T Consensus       157 ~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv  236 (337)
T 3ll6_A          157 PPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDI  236 (337)
T ss_dssp             SCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHH
T ss_pred             CCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhH
Confidence              999999999999999999999999976421                              2222   24456789999


Q ss_pred             hhhhhhhhccccccCCCCc
Q 041845          118 YSFGVLCARPAMLPMAENE  136 (143)
Q Consensus       118 ~s~G~~~~~~~~~~~~~~~  136 (143)
                      |||||++|+|+++..|+..
T Consensus       237 ~slG~il~el~~g~~p~~~  255 (337)
T 3ll6_A          237 WALGCILYLLCFRQHPFED  255 (337)
T ss_dssp             HHHHHHHHHHHHSSCCC--
T ss_pred             HHHHHHHHHHHhCCCCCcc
Confidence            9999999999998887754

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.94  E-value=1.8e-27  Score=163.05  Aligned_cols=128  Identities=18%  Similarity=0.203  Sum_probs=109.7

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNIL   84 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil   84 (143)
                      .|++++++++++.+.+..++||||+ +++|.+++.......+++..+..++.|++.|+.|||+   .+++|+||+|+||+
T Consensus        75 ~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~---~~ivH~Dlkp~Nil  150 (339)
T 1z57_A           75 STFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHS---NKLTHTDLKPENIL  150 (339)
T ss_dssp             CTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEE
T ss_pred             CceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEE
Confidence            4567999999999999999999999 7899999976655678899999999999999999998   89999999999999


Q ss_pred             EcC-------------------CCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccc
Q 041845           85 LDE-------------------NWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAML  130 (143)
Q Consensus        85 ~~~-------------------~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~  130 (143)
                      ++.                   ++.++++|||.+..               +|+......++.++|+||+||++|+|+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g  230 (339)
T 1z57_A          151 FVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLG  230 (339)
T ss_dssp             ESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHS
T ss_pred             EeccccccccCCccccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhC
Confidence            987                   56789999987642               23334455788999999999999999998


Q ss_pred             cCCCCc
Q 041845          131 PMAENE  136 (143)
Q Consensus       131 ~~~~~~  136 (143)
                      ..|+..
T Consensus       231 ~~pf~~  236 (339)
T 1z57_A          231 FTVFPT  236 (339)
T ss_dssp             SCSCCC
T ss_pred             CCCCCC
Confidence            777654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.94  E-value=5.8e-28  Score=168.10  Aligned_cols=128  Identities=19%  Similarity=0.255  Sum_probs=108.0

Q ss_pred             CCCCCCCcceeeEEeecCCch------hhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVENKEM------ILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~------~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++...+..      +++|||+. ++|.+.+.    ..+++..+..++.|++.|+.|||+   .+++|
T Consensus        96 ~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH  167 (371)
T 4exu_A           96 KHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHS---AGVVH  167 (371)
T ss_dssp             HHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred             HhcCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHH---CCCcC
Confidence            457899999999999876654      89999997 58888772    248899999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc---------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL---------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+|+||+++.++.++++|||.+..               +|+.+.. ..++.++|+||+||++|+|+++..|+...
T Consensus       168 ~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  245 (371)
T 4exu_A          168 RDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  245 (371)
T ss_dssp             SCCCGGGEEECTTCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999997642               2222333 56789999999999999999998888654

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.94  E-value=9.5e-28  Score=166.01  Aligned_cols=131  Identities=21%  Similarity=0.220  Sum_probs=104.9

Q ss_pred             CCCCCCcceeeEEeecCCc-------hhhhHhhhcCCCHHHHhhc--CCCCCCcHHHHHHHHHHHHHHHhHhh--cCCCC
Q 041845            3 NLRHRHLVSLIGHHVENKE-------MILVYDCMARGTLRDHLYN--NHKPPLQWMWRLKICIGAARGLHYLH--TGTRN   71 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~-------~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lh--~~~~~   71 (143)
                      .++||||+++++++.....       .+++|||+++ ++...+..  .....++...+..++.|++.|+.|||  +   .
T Consensus        75 ~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---~  150 (360)
T 3e3p_A           75 VLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPS---V  150 (360)
T ss_dssp             HHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTT---T
T ss_pred             hcCCCCcccHHHhhhccccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCC---C
Confidence            4689999999999865333       7899999976 66554432  23456788889999999999999999  7   8


Q ss_pred             CeeecCCCCCcEEEcC-CCcccccccchhhcc-----------------ccccCC-CCCCCcccchhhhhhhhccccccC
Q 041845           72 TIIHRDVKSTNILLDE-NWVAKHSRERQLRLL-----------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~-~~~~k~~~~~~~~~~-----------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      +++|+||||+||+++. ++.+|++|||.+...                 |+.+.. ..++.++|||||||++|+|+++..
T Consensus       151 ~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~  230 (360)
T 3e3p_A          151 NVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEP  230 (360)
T ss_dssp             CCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             CeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999996 889999999987432                 222222 347899999999999999999888


Q ss_pred             CCCcc
Q 041845          133 AENEQ  137 (143)
Q Consensus       133 ~~~~~  137 (143)
                      |+...
T Consensus       231 pf~~~  235 (360)
T 3e3p_A          231 IFRGD  235 (360)
T ss_dssp             SSCCS
T ss_pred             CcCCC
Confidence            77643

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.94  E-value=6.6e-28  Score=167.39  Aligned_cols=129  Identities=22%  Similarity=0.277  Sum_probs=108.1

Q ss_pred             CCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++||||+++++++..+     ...+++||++.+ +|.+.+...   .+++..+..++.|++.|+.|||+   .+++|+
T Consensus        80 ~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~~-~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~  152 (364)
T 3qyz_A           80 LRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMET-DLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHS---ANVLHR  152 (364)
T ss_dssp             HHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCSE-EHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECC
T ss_pred             HhcCCCCCccceeEEecCCccccceEEEEEcccCc-CHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH---CCeecC
Confidence            457899999999998754     368899999974 999988543   58889999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhccc---------------------cccC-CCCCCCcccchhhhhhhhccccccCCC
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRLLG---------------------SRIL-PAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~~~---------------------~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ||+|+||+++.++.++++|||.+....                     +.+. ...++.++|+||+||++|+|+++..|+
T Consensus       153 Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  232 (364)
T 3qyz_A          153 DLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF  232 (364)
T ss_dssp             CCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             CCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999764221                     1111 334788999999999999999988777


Q ss_pred             Ccc
Q 041845          135 NEQ  137 (143)
Q Consensus       135 ~~~  137 (143)
                      ...
T Consensus       233 ~~~  235 (364)
T 3qyz_A          233 PGK  235 (364)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            644

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.94  E-value=6.6e-28  Score=166.21  Aligned_cols=127  Identities=19%  Similarity=0.262  Sum_probs=105.0

Q ss_pred             CCCC--CCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            3 NLRH--RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         3 ~l~h--~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      .++|  +||+++++++.++...++|||+ .+++|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||+|
T Consensus        63 ~l~~~~~~iv~~~~~~~~~~~~~lv~e~-~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~---~~iiHrDikp  136 (343)
T 3dbq_A           63 KLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKP  136 (343)
T ss_dssp             HHTTTCTTBCCEEEEEECSSEEEEEECC-CSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCG
T ss_pred             hhhhcCCceEEEeeeEeeCCEEEEEEeC-CCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeecCCCCc
Confidence            4555  9999999999999999999994 577999999654  467888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc--------------------ccccC-----------CCCCCCcccchhhhhhhhcccc
Q 041845           81 TNILLDENWVAKHSRERQLRLL--------------------GSRIL-----------PAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~-----------~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      +||+++ ++.+|++|||.+...                    |+.+.           ...++.++|||||||++|+|++
T Consensus       137 ~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~  215 (343)
T 3dbq_A          137 ANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY  215 (343)
T ss_dssp             GGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHh
Confidence            999997 578999999976432                    11111           1456778999999999999999


Q ss_pred             ccCCCCc
Q 041845          130 LPMAENE  136 (143)
Q Consensus       130 ~~~~~~~  136 (143)
                      +..|+..
T Consensus       216 g~~pf~~  222 (343)
T 3dbq_A          216 GKTPFQQ  222 (343)
T ss_dssp             SSCTTTT
T ss_pred             CCCcchh
Confidence            8888764

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.94  E-value=7.2e-28  Score=166.23  Aligned_cols=129  Identities=20%  Similarity=0.288  Sum_probs=108.2

Q ss_pred             CCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            2 SNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      +.++||||+++++++...     ...+++||++. ++|.+.+..   ..+++..+..++.|++.|+.|||+   .+++|+
T Consensus        64 ~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~---~~ivH~  136 (353)
T 2b9h_A           64 KHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHG---SNVIHR  136 (353)
T ss_dssp             HHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECS
T ss_pred             HhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHH---CCeecC
Confidence            457899999999988654     57899999997 599998854   367889999999999999999998   899999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhcc----------------------------ccccC-CCCCCCcccchhhhhhhhcc
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRLL----------------------------GSRIL-PAKLTEKSDVYSFGVLCARP  127 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~~----------------------------~~~~~-~~~~~~~~Di~s~G~~~~~~  127 (143)
                      ||+|+||+++.++.++++|||.+...                            |+.+. ...++.++|+||+||++|+|
T Consensus       137 Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l  216 (353)
T 2b9h_A          137 DLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAEL  216 (353)
T ss_dssp             CCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHH
Confidence            99999999999999999999976421                            11122 35678899999999999999


Q ss_pred             ccccCCCCcc
Q 041845          128 AMLPMAENEQ  137 (143)
Q Consensus       128 ~~~~~~~~~~  137 (143)
                      +++..|+...
T Consensus       217 ~~g~~pf~~~  226 (353)
T 2b9h_A          217 FLRRPIFPGR  226 (353)
T ss_dssp             HHSSCSCCCS
T ss_pred             HhCCCCCCCC
Confidence            9988777643

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.94  E-value=2.9e-27  Score=165.14  Aligned_cols=130  Identities=21%  Similarity=0.159  Sum_probs=109.3

Q ss_pred             CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEE
Q 041845            6 HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILL   85 (143)
Q Consensus         6 h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~   85 (143)
                      |++|+++++++..++..++|||+++ ++|.+.+.......+++..+..++.|++.|+.|||+. ..+++||||||+||++
T Consensus       115 ~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll  192 (382)
T 2vx3_A          115 KYYIVHLKRHFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILL  192 (382)
T ss_dssp             GGGBCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEE
T ss_pred             ceeEEEeeeeeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEE
Confidence            3469999999999999999999996 5999999766555688999999999999999999942 1689999999999999


Q ss_pred             c--CCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           86 D--ENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        86 ~--~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +  .++.+|++|||.+..               +|+.+....++.++|||||||++|+|+++..|+...
T Consensus       193 ~~~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          193 CNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             SSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ecCCCCcEEEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            5  467899999997642               333345567899999999999999999988887643

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.94  E-value=1.3e-27  Score=167.46  Aligned_cols=124  Identities=18%  Similarity=0.219  Sum_probs=103.2

Q ss_pred             CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEE
Q 041845            6 HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILL   85 (143)
Q Consensus         6 h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~   85 (143)
                      ||||+++++++..++.+++||| +.+++|.+++....  .+++..+..++.|++.|+.|||+   .+++||||||+||++
T Consensus       115 ~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~---~~ivHrDlkp~NIll  188 (390)
T 2zmd_A          115 SDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLI  188 (390)
T ss_dssp             CTTBCCEEEEEECSSEEEEEEE-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHT---TTCCCCCCCGGGEEE
T ss_pred             CCeEEEEEEEEecCCEEEEEEe-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCCHHHEEE
Confidence            6999999999999999999999 55779999986543  67788889999999999999998   899999999999999


Q ss_pred             cCCCcccccccchhhccc--------------------cccC-----------CCCCCCcccchhhhhhhhccccccCCC
Q 041845           86 DENWVAKHSRERQLRLLG--------------------SRIL-----------PAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        86 ~~~~~~k~~~~~~~~~~~--------------------~~~~-----------~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      + ++.+|++|||.+....                    +.+.           ...++.++|||||||++|+|+++..|+
T Consensus       189 ~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf  267 (390)
T 2zmd_A          189 V-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF  267 (390)
T ss_dssp             S-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             E-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcc
Confidence            6 5789999999764321                    1111           125778899999999999999988887


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       268 ~~  269 (390)
T 2zmd_A          268 QQ  269 (390)
T ss_dssp             TT
T ss_pred             hh
Confidence            64

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.94  E-value=8.4e-28  Score=163.62  Aligned_cols=129  Identities=23%  Similarity=0.329  Sum_probs=106.1

Q ss_pred             CCCCCCCcceeeEEee--------------cCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhc
Q 041845            2 SNLRHRHLVSLIGHHV--------------ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHT   67 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~--------------~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~   67 (143)
                      +.++||||+++++++.              +....+++|||++ ++|.+++..   ..+++..+..++.|++.|+.|||+
T Consensus        63 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~  138 (320)
T 2i6l_A           63 RRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHS  138 (320)
T ss_dssp             HTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCeeEEEEeccccccccccccccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHh
Confidence            5689999999999874              3457899999997 599998843   367888899999999999999998


Q ss_pred             CCCCCeeecCCCCCcEEEc-CCCcccccccchhhccc---------------------cccC-CCCCCCcccchhhhhhh
Q 041845           68 GTRNTIIHRDVKSTNILLD-ENWVAKHSRERQLRLLG---------------------SRIL-PAKLTEKSDVYSFGVLC  124 (143)
Q Consensus        68 ~~~~~i~h~~l~~~nil~~-~~~~~k~~~~~~~~~~~---------------------~~~~-~~~~~~~~Di~s~G~~~  124 (143)
                         .+++|+||+|+||+++ .++.+|++|||.+....                     +... ...++.++|+||||+++
T Consensus       139 ---~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il  215 (320)
T 2i6l_A          139 ---ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIF  215 (320)
T ss_dssp             ---TTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred             ---CCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHH
Confidence               8999999999999997 56789999999765321                     1111 24678889999999999


Q ss_pred             hccccccCCCCcc
Q 041845          125 ARPAMLPMAENEQ  137 (143)
Q Consensus       125 ~~~~~~~~~~~~~  137 (143)
                      |+|+++..|+...
T Consensus       216 ~el~~g~~pf~~~  228 (320)
T 2i6l_A          216 AEMLTGKTLFAGA  228 (320)
T ss_dssp             HHHHHSSCSSCCS
T ss_pred             HHHHhCCCCCCCC
Confidence            9999988777643

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.94  E-value=1e-27  Score=169.90  Aligned_cols=129  Identities=17%  Similarity=0.144  Sum_probs=101.8

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .+ +||||+++++++.++...+++||++. ++|.+++.... .......+..++.|++.|+.|||+   .+++||||||+
T Consensus        73 ~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDlKp~  147 (432)
T 3p23_A           73 ESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHS---LNIVHRDLKPH  147 (432)
T ss_dssp             HSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHH---TTCCCCCCSTT
T ss_pred             hccCCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHH---CcCEeCCCCHH
Confidence            45 79999999999999999999999996 59999986543 334444567899999999999998   89999999999


Q ss_pred             cEEEcCC-----Ccccccccchhhc---------------------cccccC---CCCCCCcccchhhhhhhhcccc-cc
Q 041845           82 NILLDEN-----WVAKHSRERQLRL---------------------LGSRIL---PAKLTEKSDVYSFGVLCARPAM-LP  131 (143)
Q Consensus        82 nil~~~~-----~~~k~~~~~~~~~---------------------~~~~~~---~~~~~~~~Di~s~G~~~~~~~~-~~  131 (143)
                      ||+++..     ..++++|||.+..                     +|+.+.   ...++.++||||+||++|+|++ +.
T Consensus       148 NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~  227 (432)
T 3p23_A          148 NILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGS  227 (432)
T ss_dssp             SEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSC
T ss_pred             HEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCC
Confidence            9999532     3467999987632                     222222   3455678999999999999999 77


Q ss_pred             CCCCc
Q 041845          132 MAENE  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      .|+..
T Consensus       228 ~pf~~  232 (432)
T 3p23_A          228 HPFGK  232 (432)
T ss_dssp             BTTBS
T ss_pred             CCcch
Confidence            77653

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.94  E-value=9e-28  Score=166.01  Aligned_cols=128  Identities=19%  Similarity=0.252  Sum_probs=107.2

Q ss_pred             CCCCCCCcceeeEEeecCCc------hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVENKE------MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~------~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      +.++||||+++++++.....      .+++|||+. ++|.+.+.    ..+++..+..++.|++.|+.|||+   .+++|
T Consensus        78 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~---~~ivH  149 (353)
T 3coi_A           78 KHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHS---AGVVH  149 (353)
T ss_dssp             HHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred             HhcCCCCcccHhheEecccccccceeEEEEecccc-CCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCccc
Confidence            45789999999999987654      489999997 58887762    258889999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhcc---------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLL---------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~---------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+|+||+++.++.++++|||.+...               |+.... ..++.++|+||+||++|+|+++..|+...
T Consensus       150 ~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  227 (353)
T 3coi_A          150 RDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  227 (353)
T ss_dssp             SSCCGGGEEECTTCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSS
T ss_pred             CCCCHHHEeECCCCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999976532               222222 46788999999999999999988887653

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.94  E-value=1.7e-27  Score=160.67  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=105.5

Q ss_pred             CCCCCCcceeeEEe-ecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            3 NLRHRHLVSLIGHH-VENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         3 ~l~h~niv~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .++|++++..++.+ ..++..+++|||+ +++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        60 ~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~---~~ivH~Dlkp~  134 (296)
T 4hgt_A           60 MMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPD  134 (296)
T ss_dssp             HHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHH---CCeecCCCCHH
Confidence            45677766665554 5677889999999 88999998533 3468899999999999999999998   89999999999


Q ss_pred             cEEE---cCCCcccccccchhhcc-------------------------ccccCCCCCCCcccchhhhhhhhccccccCC
Q 041845           82 NILL---DENWVAKHSRERQLRLL-------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        82 nil~---~~~~~~k~~~~~~~~~~-------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      ||++   +.++.+|++|||.+...                         |+......++.++||||+||++|+|+++..|
T Consensus       135 NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  214 (296)
T 4hgt_A          135 NFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLP  214 (296)
T ss_dssp             GEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCC
Confidence            9999   78889999999976432                         1222334567889999999999999998888


Q ss_pred             CCc
Q 041845          134 ENE  136 (143)
Q Consensus       134 ~~~  136 (143)
                      +..
T Consensus       215 f~~  217 (296)
T 4hgt_A          215 WQG  217 (296)
T ss_dssp             TSS
T ss_pred             Ccc
Confidence            764

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.94  E-value=1.5e-27  Score=164.34  Aligned_cols=128  Identities=17%  Similarity=0.158  Sum_probs=108.2

Q ss_pred             CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEE
Q 041845            6 HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILL   85 (143)
Q Consensus         6 h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~   85 (143)
                      +.+++.+.+++...+..+++|||+ ++++.+.+.......+++..+..++.|++.|+.|||+   .+++|+||+|+||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~---~~ivH~Dlkp~NIll  156 (355)
T 2eu9_A           81 KFLCVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHE---NQLTHTDLKPENILF  156 (355)
T ss_dssp             CSCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEE
T ss_pred             ceeEEEeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH---CCcccCCCCHHHEEE
Confidence            344899999999999999999999 5688777766555578899999999999999999998   899999999999999


Q ss_pred             -------------------cCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           86 -------------------DENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        86 -------------------~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                                         +.++.++++|||.+..               +|+.+....++.++|+||+||++|+|+++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~  236 (355)
T 2eu9_A          157 VNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGF  236 (355)
T ss_dssp             SCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ecccccccccccccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCC
Confidence                               5678899999997642               233344567889999999999999999988


Q ss_pred             CCCCcc
Q 041845          132 MAENEQ  137 (143)
Q Consensus       132 ~~~~~~  137 (143)
                      .|+...
T Consensus       237 ~pf~~~  242 (355)
T 2eu9_A          237 TLFQTH  242 (355)
T ss_dssp             CSCCCS
T ss_pred             CCCCCC
Confidence            887643

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.93  E-value=2.1e-27  Score=160.30  Aligned_cols=129  Identities=16%  Similarity=0.153  Sum_probs=104.9

Q ss_pred             CCCCCCcceeeEEe-ecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            3 NLRHRHLVSLIGHH-VENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         3 ~l~h~niv~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .++|++++..++.+ ..+...+++|||+ +++|.+++... ...+++..+..++.|++.|+.|||+   .+++|+||+|+
T Consensus        60 ~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~---~~ivH~dlkp~  134 (296)
T 3uzp_A           60 MMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPD  134 (296)
T ss_dssp             HHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGG
T ss_pred             HhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeCCCCHH
Confidence            46777766655554 5677889999999 88999998533 3468899999999999999999998   89999999999


Q ss_pred             cEEEc---CCCcccccccchhhccc-------------------------cccCCCCCCCcccchhhhhhhhccccccCC
Q 041845           82 NILLD---ENWVAKHSRERQLRLLG-------------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        82 nil~~---~~~~~k~~~~~~~~~~~-------------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      ||+++   .++.++++|||.+....                         +......++.++|||||||++|+|+++..|
T Consensus       135 NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  214 (296)
T 3uzp_A          135 NFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLP  214 (296)
T ss_dssp             GEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence            99994   78899999999764321                         222334567889999999999999998888


Q ss_pred             CCc
Q 041845          134 ENE  136 (143)
Q Consensus       134 ~~~  136 (143)
                      +..
T Consensus       215 f~~  217 (296)
T 3uzp_A          215 WQG  217 (296)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.93  E-value=4.9e-27  Score=172.83  Aligned_cols=132  Identities=25%  Similarity=0.166  Sum_probs=110.5

Q ss_pred             CCCCCCCcceeeEEeec------CCchhhhHhhhcCCCHHHHhhcCC-CCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            2 SNLRHRHLVSLIGHHVE------NKEMILVYDCMARGTLRDHLYNNH-KPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~------~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      +.++||||+++++++..      ++..++||||+++++|.+++.... ...+++..+..++.|++.|+.|||+   .+++
T Consensus        67 ~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs---~gIV  143 (676)
T 3qa8_A           67 KKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRII  143 (676)
T ss_dssp             HHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHH---TTBC
T ss_pred             HhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH---CCCc
Confidence            45789999999998765      667899999999999999996533 2357888899999999999999998   8999


Q ss_pred             ecCCCCCcEEEcCCCc---ccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           75 HRDVKSTNILLDENWV---AKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        75 h~~l~~~nil~~~~~~---~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      |+|++|+||+++.++.   ++++|||.+..                 +|+......++.++|+||+||++|+++++..|+
T Consensus       144 HrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf  223 (676)
T 3qa8_A          144 HRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF  223 (676)
T ss_dssp             CCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSC
T ss_pred             cCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCC
Confidence            9999999999997654   78999987643                 233344567788999999999999999987777


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       224 ~~  225 (676)
T 3qa8_A          224 LP  225 (676)
T ss_dssp             CS
T ss_pred             Cc
Confidence            43

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.93  E-value=1.2e-27  Score=162.86  Aligned_cols=130  Identities=22%  Similarity=0.260  Sum_probs=105.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-CeeecCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRN-TIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-~i~h~~l~~   80 (143)
                      +.++||||+++++++.+++..+++|||+ ++.+..... .....+++..+..++.|++.|+.|||+   . +++|+||+|
T Consensus        79 ~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp  153 (318)
T 2dyl_A           79 KSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKK-RMQGPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKP  153 (318)
T ss_dssp             HTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCG
T ss_pred             HhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCH
Confidence            3568999999999999999999999999 445555543 223468889999999999999999997   5 899999999


Q ss_pred             CcEEEcCCCcccccccchhhc-----------------ccccc-----CCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL-----------------LGSRI-----LPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~-----------------~~~~~-----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +||+++.++.++++|||.+..                 +|+..     ....++.++|+||+|+++|+|+++..|+..
T Consensus       154 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  231 (318)
T 2dyl_A          154 SNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKN  231 (318)
T ss_dssp             GGEEECTTSCEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HHEEECCCCCEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCC
Confidence            999999999999999997632                 12222     234577899999999999999998877754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.93  E-value=8.2e-28  Score=178.44  Aligned_cols=127  Identities=19%  Similarity=0.239  Sum_probs=102.2

Q ss_pred             CCCCCCCCcceeeEEeecCCc-----hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVENKE-----MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~-----~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |++++||||+++++++...+.     .++||||+++++|.+.+..    .+++..+..++.|++.++.|||+   .+++|
T Consensus       133 l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~---~giiH  205 (681)
T 2pzi_A          133 LAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHS---IGLVY  205 (681)
T ss_dssp             GGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHH---TTEEC
T ss_pred             HHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHH---CCCee
Confidence            467899999999999987655     6999999999999887632    68899999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhccc-------------cccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRLLG-------------SRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~~~-------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      |||||+||+++.+ .+|++|||.+....             ++.....++.++|||||||++|+|+++..++.
T Consensus       206 rDlkp~NIll~~~-~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~  277 (681)
T 2pzi_A          206 NDLKPENIMLTEE-QLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRN  277 (681)
T ss_dssp             CCCSGGGEEECSS-CEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEET
T ss_pred             cccChHHeEEeCC-cEEEEecccchhcccCCccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCc
Confidence            9999999999975 89999999764321             11222234778999999999999998754443

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.93  E-value=3.7e-27  Score=167.09  Aligned_cols=128  Identities=18%  Similarity=0.185  Sum_probs=100.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCC-----cHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPL-----QWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      +||||+++++++.+++..+++|||+. ++|.+++........     .+..+..++.|++.|+.|||+   .+++|||||
T Consensus        67 ~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~---~~ivHrDLk  142 (434)
T 2rio_A           67 DHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHS---LKIIHRDLK  142 (434)
T ss_dssp             TSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred             CCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHH---CCccccCCC
Confidence            79999999999999999999999996 599999965432111     222356799999999999998   899999999


Q ss_pred             CCcEEEcCC-------------Ccccccccchhhcc----------------------ccccC-------CCCCCCcccc
Q 041845           80 STNILLDEN-------------WVAKHSRERQLRLL----------------------GSRIL-------PAKLTEKSDV  117 (143)
Q Consensus        80 ~~nil~~~~-------------~~~k~~~~~~~~~~----------------------~~~~~-------~~~~~~~~Di  117 (143)
                      |+||+++..             +.++++|||.+...                      |+.+.       ...++.++||
T Consensus       143 p~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Di  222 (434)
T 2rio_A          143 PQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDI  222 (434)
T ss_dssp             GGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHH
T ss_pred             hHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhh
Confidence            999999754             37899999876421                      12121       1457889999


Q ss_pred             hhhhhhhhcccc-ccCCCCc
Q 041845          118 YSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus       118 ~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+||++|||++ +..|+..
T Consensus       223 wSlG~il~ellt~g~~Pf~~  242 (434)
T 2rio_A          223 FSMGCVFYYILSKGKHPFGD  242 (434)
T ss_dssp             HHHHHHHHHHHTTSCCTTCS
T ss_pred             HhHHHHHHHHHhCCCCCCCC
Confidence            999999999998 7777654

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.93  E-value=2.2e-27  Score=164.78  Aligned_cols=128  Identities=18%  Similarity=0.242  Sum_probs=106.7

Q ss_pred             CCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCC-CeeecCCC
Q 041845            5 RHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRN-TIIHRDVK   79 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~-~i~h~~l~   79 (143)
                      .|+||+++++++...+    ..+++||++ +++|.+++.......+++..+..++.|++.|+.|||+   . +++|+||+
T Consensus        84 ~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~---~~~ivH~Dik  159 (373)
T 1q8y_A           84 GANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR---RCGIIHTDIK  159 (373)
T ss_dssp             HHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH---TTCEECSCCS
T ss_pred             ccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHh---cCCEEecCCC
Confidence            4899999999987543    689999999 7799999976555678899999999999999999998   7 99999999


Q ss_pred             CCcEEEcC------CCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDE------NWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~------~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+||+++.      .+.++++|||.+..               +|+......++.++|||||||++|+|+++..|+..
T Consensus       160 p~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  237 (373)
T 1q8y_A          160 PENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP  237 (373)
T ss_dssp             GGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             hHHeEEeccCCCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            99999953      34789999997642               23334456688999999999999999999888764

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.93  E-value=7.8e-27  Score=159.50  Aligned_cols=127  Identities=18%  Similarity=0.180  Sum_probs=106.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcC-CCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMAR-GTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .|+||+++++++.+++..++++|++.+ ++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+||
T Consensus       106 ~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~---~~ivH~Dlkp~NI  180 (320)
T 3a99_A          106 GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENI  180 (320)
T ss_dssp             SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGE
T ss_pred             CCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCcEeCCCCHHHE
Confidence            469999999999999999999999975 7999998653  367889999999999999999998   8999999999999


Q ss_pred             EEc-CCCcccccccchhhcccc----------------ccCCCCC-CCcccchhhhhhhhccccccCCCCc
Q 041845           84 LLD-ENWVAKHSRERQLRLLGS----------------RILPAKL-TEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        84 l~~-~~~~~k~~~~~~~~~~~~----------------~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +++ .++.+|++|||.+.....                ......+ +.++|+||||+++|+|+++..|+..
T Consensus       181 ll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  251 (320)
T 3a99_A          181 LIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEH  251 (320)
T ss_dssp             EEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             EEeCCCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCC
Confidence            999 778999999997653221                1112233 5678999999999999998887764

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.92  E-value=7.3e-27  Score=158.89  Aligned_cols=127  Identities=20%  Similarity=0.216  Sum_probs=102.9

Q ss_pred             CCCCcceeeEEeecCCchhhhHhh-hcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDC-MARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      +|+||+++++++.+.+..++++|+ +.+++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+|++|+||
T Consensus        96 ~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~---~~i~H~dlkp~Ni  170 (312)
T 2iwi_A           96 GHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCHS---RGVVHRDIKDENI  170 (312)
T ss_dssp             CCSSBCCEEEEC-----CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---HTEECCCCSGGGE
T ss_pred             CCCCeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeecCCChhhE
Confidence            899999999999999999999999 7888999998653  368899999999999999999998   8999999999999


Q ss_pred             EEc-CCCcccccccchhhccccc----------------cCCCCC-CCcccchhhhhhhhccccccCCCCc
Q 041845           84 LLD-ENWVAKHSRERQLRLLGSR----------------ILPAKL-TEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        84 l~~-~~~~~k~~~~~~~~~~~~~----------------~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +++ .++.++++|||.+......                .....+ +.++|+||+|+++|+|+++..|+..
T Consensus       171 l~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  241 (312)
T 2iwi_A          171 LIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFER  241 (312)
T ss_dssp             EEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred             EEeCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCC
Confidence            999 7889999999976533211                112223 3479999999999999998887754

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.92  E-value=4.9e-26  Score=163.13  Aligned_cols=129  Identities=16%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             CCCC-CCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            3 NLRH-RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         3 ~l~h-~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .++| +++..+..++......+++|||+ +++|.+++... ...+++..++.++.|++.|+.|||+   .+++||||||+
T Consensus        58 ~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~-~~~l~~~~~~~i~~qi~~aL~yLH~---~gIvHrDIKP~  132 (483)
T 3sv0_A           58 ILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVHS---KSFLHRDIKPD  132 (483)
T ss_dssp             HTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGG
T ss_pred             HhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHH---CCEeecccCcc
Confidence            4555 56666666667788899999999 88999998543 3478999999999999999999998   89999999999


Q ss_pred             cEEE---cCCCcccccccchhhccc-------------------------cccCCCCCCCcccchhhhhhhhccccccCC
Q 041845           82 NILL---DENWVAKHSRERQLRLLG-------------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        82 nil~---~~~~~~k~~~~~~~~~~~-------------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      |||+   +.++.+|++|||.+....                         +......++.++|||||||++|||+++..|
T Consensus       133 NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~P  212 (483)
T 3sv0_A          133 NFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLP  212 (483)
T ss_dssp             GEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred             eEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCC
Confidence            9999   578899999999864321                         222334567889999999999999999888


Q ss_pred             CCc
Q 041845          134 ENE  136 (143)
Q Consensus       134 ~~~  136 (143)
                      +..
T Consensus       213 f~~  215 (483)
T 3sv0_A          213 WQG  215 (483)
T ss_dssp             TSS
T ss_pred             Ccc
Confidence            865

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.92  E-value=7.8e-26  Score=153.93  Aligned_cols=124  Identities=18%  Similarity=0.215  Sum_probs=103.4

Q ss_pred             CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEE
Q 041845            6 HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILL   85 (143)
Q Consensus         6 h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~   85 (143)
                      |+||+++++++.+++..+++|| +.+++|.+++...  ..+++..+..++.|++.|+.|||+   .+++|+||+|+||++
T Consensus        87 ~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~---~~ivH~dlkp~NIl~  160 (313)
T 3cek_A           87 SDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQ---HGIVHSDLKPANFLI  160 (313)
T ss_dssp             CTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEE
T ss_pred             CCceEEEEEEeecCCEEEEEEe-cCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCceecCCCcccEEE
Confidence            6999999999999999999999 5577999999654  367888899999999999999998   899999999999999


Q ss_pred             cCCCcccccccchhhcc--------------------ccccCC-----------CCCCCcccchhhhhhhhccccccCCC
Q 041845           86 DENWVAKHSRERQLRLL--------------------GSRILP-----------AKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        86 ~~~~~~k~~~~~~~~~~--------------------~~~~~~-----------~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ++ +.+|++|||.+...                    |+....           ..++.++|+||||+++|+|+++..|+
T Consensus       161 ~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf  239 (313)
T 3cek_A          161 VD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPF  239 (313)
T ss_dssp             ET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             EC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCch
Confidence            64 88999999876421                    111111           35677899999999999999988777


Q ss_pred             Cc
Q 041845          135 NE  136 (143)
Q Consensus       135 ~~  136 (143)
                      ..
T Consensus       240 ~~  241 (313)
T 3cek_A          240 QQ  241 (313)
T ss_dssp             TT
T ss_pred             hh
Confidence            54

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.91  E-value=2.5e-26  Score=157.82  Aligned_cols=111  Identities=13%  Similarity=0.050  Sum_probs=88.7

Q ss_pred             CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhh-cCCCCCeeecCCCCCcEEEcCCC--------
Q 041845           19 NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLH-TGTRNTIIHRDVKSTNILLDENW--------   89 (143)
Q Consensus        19 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~~l~~~nil~~~~~--------   89 (143)
                      ++..++||||+++|++.+.+.+   ..+++..+..++.|++.|+.||| +   .+++||||||+|||++.++        
T Consensus       134 ~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~~---~~ivHrDlKp~NILl~~~~~~~~~~~~  207 (336)
T 2vuw_A          134 DDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASLAVAEAS---LRFEHRDLHWGNVLLKKTSLKKLHYTL  207 (336)
T ss_dssp             TTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHHHHHHHH---HCCBCSCCCGGGEEEEECSCSEEEEEE
T ss_pred             cCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHh---CCEeECCCCHHHEEEeccCCcceeeec
Confidence            6789999999999876666633   36789999999999999999999 8   8999999999999999886        


Q ss_pred             ------------cccccccchhhc------------cccccCCCCCCCcccchhhhhh-hhccccccCCCC
Q 041845           90 ------------VAKHSRERQLRL------------LGSRILPAKLTEKSDVYSFGVL-CARPAMLPMAEN  135 (143)
Q Consensus        90 ------------~~k~~~~~~~~~------------~~~~~~~~~~~~~~Di~s~G~~-~~~~~~~~~~~~  135 (143)
                                  .+|++|||.++.            .+++...+..+.++||||++++ .++++.+..|+.
T Consensus       208 ~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~~~~~~Diwsl~~~~~~~~~~g~~p~~  278 (336)
T 2vuw_A          208 NGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYS  278 (336)
T ss_dssp             TTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCCSSHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred             cCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCCCccceehhhhhCCCCcccccccCCCc
Confidence                        899999998752            2233333344889999998777 566666655554

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.87  E-value=7.4e-24  Score=149.35  Aligned_cols=113  Identities=17%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             hhhhHhhhcCCCHHHHhh-----cCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCccccccc
Q 041845           22 MILVYDCMARGTLRDHLY-----NNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRE   96 (143)
Q Consensus        22 ~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~   96 (143)
                      .+++|+.+ .++|.+++.     ......+++..+..++.|++.|+.|||+   .+++||||||+|||++.++.+|++||
T Consensus       180 ~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~---~~iiHrDiKp~NILl~~~~~~kL~DF  255 (413)
T 3dzo_A          180 RFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGF  255 (413)
T ss_dssp             EEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCG
T ss_pred             eEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCCcccceEEEecCCeEEEEec
Confidence            45566655 468888873     2223456677888899999999999998   89999999999999999999999999


Q ss_pred             chhhc--------------ccccc----------CCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           97 RQLRL--------------LGSRI----------LPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        97 ~~~~~--------------~~~~~----------~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      |.+..              +|+.+          ....++.++|||||||++|+|+++..|+....
T Consensus       256 G~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~  321 (413)
T 3dzo_A          256 EHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDA  321 (413)
T ss_dssp             GGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTG
T ss_pred             cceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            98542              22223          33346779999999999999999888876543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.72  E-value=8.7e-19  Score=127.21  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=75.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++..++..++..++||||+++++|.+++..          ...++.|++.++.|||+   ++++|||+||+
T Consensus       394 ~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~---~gIiHrDiKp~  460 (540)
T 3en9_A          394 ALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHK---NDVIHNDLTTS  460 (540)
T ss_dssp             HHGGGGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHH---TTEECTTCCTT
T ss_pred             HhcCCCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHH---CcCccCCCCHH
Confidence            467999999666666677788999999999999999843          45789999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc
Q 041845           82 NILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~  102 (143)
                      ||+++.  .+|++|||.+...
T Consensus       461 NILl~~--~~kL~DFGla~~~  479 (540)
T 3en9_A          461 NFIFDK--DLYIIDFGLGKIS  479 (540)
T ss_dssp             SEEESS--SEEECCCTTCEEC
T ss_pred             HEEECC--eEEEEECccCEEC
Confidence            999998  9999999987643

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.55  E-value=3.4e-16  Score=105.32  Aligned_cols=79  Identities=9%  Similarity=-0.068  Sum_probs=64.8

Q ss_pred             ceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCC
Q 041845           10 VSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENW   89 (143)
Q Consensus        10 v~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~   89 (143)
                      +++.+++. .+..++||||+++++|.+ +..        .....++.|++.|+.+||+   .+++|||+||+||+++ ++
T Consensus       164 ~~v~~~~~-~~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~---~giiHrDlkp~NILl~-~~  229 (282)
T 1zar_A          164 LAVPKVYA-WEGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVS-EE  229 (282)
T ss_dssp             SSSCCEEE-EETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEE-TT
T ss_pred             CCcCeEEe-ccceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHH---CCCEeCCCCHHHEEEE-CC
Confidence            55656543 356799999999999988 411        1235689999999999998   9999999999999999 99


Q ss_pred             cccccccchhhcc
Q 041845           90 VAKHSRERQLRLL  102 (143)
Q Consensus        90 ~~k~~~~~~~~~~  102 (143)
                      .++++|||.+...
T Consensus       230 ~vkl~DFG~a~~~  242 (282)
T 1zar_A          230 GIWIIDFPQSVEV  242 (282)
T ss_dssp             EEEECCCTTCEET
T ss_pred             cEEEEECCCCeEC
Confidence            9999999987644

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.33  E-value=2.2e-13  Score=90.46  Aligned_cols=72  Identities=15%  Similarity=0.105  Sum_probs=57.9

Q ss_pred             CchhhhHhhhcC-C----CHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhh-cCCCCCeeecCCCCCcEEEcCCCcccc
Q 041845           20 KEMILVYDCMAR-G----TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLH-TGTRNTIIHRDVKSTNILLDENWVAKH   93 (143)
Q Consensus        20 ~~~~lv~e~~~~-~----~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~~l~~~nil~~~~~~~k~   93 (143)
                      +..++||||+.+ |    +|.+....     .+...+..++.|++.++.+|| +   .+++|||++|.||+++.  .+++
T Consensus       141 ~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~---~givHrDlkp~NILl~~--~~~l  210 (258)
T 1zth_A          141 MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQE---AELVHADLSEYNIMYID--KVYF  210 (258)
T ss_dssp             ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHT---SCEECSSCSTTSEEESS--SEEE
T ss_pred             CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHH---CCEEeCCCCHHHEEEcC--cEEE
Confidence            357899999942 3    67665422     123456788999999999999 8   89999999999999998  8999


Q ss_pred             cccchhhc
Q 041845           94 SRERQLRL  101 (143)
Q Consensus        94 ~~~~~~~~  101 (143)
                      +|||.+..
T Consensus       211 iDFG~a~~  218 (258)
T 1zth_A          211 IDMGQAVT  218 (258)
T ss_dssp             CCCTTCEE
T ss_pred             EECccccc
Confidence            99998754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.07  E-value=4.3e-12  Score=88.56  Aligned_cols=67  Identities=16%  Similarity=0.070  Sum_probs=52.8

Q ss_pred             hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCc----------c
Q 041845           22 MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWV----------A   91 (143)
Q Consensus        22 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~----------~   91 (143)
                      .++||||++++++.+...      .  .....++.|++.++.++|.   .+++||||||.|||++.++.          +
T Consensus       186 ~~LVME~i~G~~L~~l~~------~--~~~~~l~~qll~~l~~lH~---~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~  254 (397)
T 4gyi_A          186 HTIVMSLVDALPMRQVSS------V--PDPASLYADLIALILRLAK---HGLIHGDFNEFNILIREEKDAEDPSSITLTP  254 (397)
T ss_dssp             TEEEEECCSCEEGGGCCC------C--SCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEEEEECSSCTTSEEEEE
T ss_pred             ceEEEEecCCccHhhhcc------c--HHHHHHHHHHHHHHHHHHH---CCCcCCCCCHHHEEEeCCCCcccccccccce
Confidence            469999999888765331      1  1235678899999999997   89999999999999987763          6


Q ss_pred             cccccchh
Q 041845           92 KHSRERQL   99 (143)
Q Consensus        92 k~~~~~~~   99 (143)
                      .+.||+.+
T Consensus       255 ~iID~~Q~  262 (397)
T 4gyi_A          255 IIIXFPQM  262 (397)
T ss_dssp             EECCCTTC
T ss_pred             EEEEeCCc
Confidence            67888754

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.54  E-value=5.7e-08  Score=64.22  Aligned_cols=89  Identities=11%  Similarity=-0.007  Sum_probs=65.8

Q ss_pred             CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCC----------------
Q 041845            6 HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGT----------------   69 (143)
Q Consensus         6 h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~----------------   69 (143)
                      +..+.++++++.+.+..+++||++++.++.+.+..       ......++.+++.++..||+..                
T Consensus        69 ~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~-------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~  141 (263)
T 3tm0_A           69 KLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED-------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAE  141 (263)
T ss_dssp             TSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCCT-------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHH
T ss_pred             CCCCCeEEEEEecCCceEEEEEecCCeehhhccCC-------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHH
Confidence            56677888888888889999999999888776411       1112356677777888888611                


Q ss_pred             ----------------------------------------CCCeeecCCCCCcEEEcCCCcccccccchhhc
Q 041845           70 ----------------------------------------RNTIIHRDVKSTNILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        70 ----------------------------------------~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~  101 (143)
                                                              ...++|+|+++.||+++.+....+.||+.+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          142 LDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             HHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                                                    13489999999999998766667899986544

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.39  E-value=2.6e-07  Score=60.68  Aligned_cols=85  Identities=15%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             cceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCC-------------------
Q 041845            9 LVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGT-------------------   69 (143)
Q Consensus         9 iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~-------------------   69 (143)
                      +.+++++...++..+++||++++.++.  ...     ..   ...+..+++..+..+|+..                   
T Consensus        77 vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~  146 (264)
T 1nd4_A           77 CAAVLDVVTEAGRDWLLLGEVPGQDLL--SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERART  146 (264)
T ss_dssp             BCCEEEEEECSSCEEEEEECCSSEETT--TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHH
T ss_pred             CCeEEEeccCCCCCEEEEEecCCcccC--cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHH
Confidence            556888877777789999999987773  211     11   1234555666666666421                   


Q ss_pred             ------------------------------------CCCeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           70 ------------------------------------RNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        70 ------------------------------------~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                                                          ...++|+|++|.||+++.+....+.||+.+...+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g~  216 (264)
T 1nd4_A          147 RMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVAD  216 (264)
T ss_dssp             HHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEEE
T ss_pred             HHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccCC
Confidence                                                1238999999999999877667799998765443

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.25  E-value=9.9e-07  Score=60.90  Aligned_cols=92  Identities=14%  Similarity=0.114  Sum_probs=65.6

Q ss_pred             CCCcceeeEEeecC---CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCC-------------
Q 041845            6 HRHLVSLIGHHVEN---KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGT-------------   69 (143)
Q Consensus         6 h~niv~~~~~~~~~---~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~-------------   69 (143)
                      +..+.+++..+.+.   +..+++||++++.++.+..    ...++......+..+++..+..||...             
T Consensus        97 ~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~  172 (359)
T 3dxp_A           97 DVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPG  172 (359)
T ss_dssp             SSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCS
T ss_pred             CCCCCcEEEECCCCCccCCeEEEEEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCC
Confidence            34577888887765   3478999999986664311    123455666777888888888888521             


Q ss_pred             ------------------------------------------CCCeeecCCCCCcEEEcCCCc--ccccccchhhc
Q 041845           70 ------------------------------------------RNTIIHRDVKSTNILLDENWV--AKHSRERQLRL  101 (143)
Q Consensus        70 ------------------------------------------~~~i~h~~l~~~nil~~~~~~--~k~~~~~~~~~  101 (143)
                                                                ...++|+|+++.||+++.++.  +.+.||+.+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          173 NYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             CchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                                                      246899999999999987643  57889886643

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.47  E-value=0.00011  Score=48.54  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=25.8

Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                      .++|+|+.+.|++++..+..-+.|++.+.+..
T Consensus       194 ~l~HGDl~~~Nil~~~~~~~~viDwe~a~~gd  225 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD  225 (272)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEEEE
T ss_pred             EEEcCCCCCCeEEEECCeEEEEEECcccccCC
Confidence            37899999999999987777788987665433

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.33  E-value=0.00019  Score=48.30  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=24.8

Q ss_pred             CCeeecCCCCCcEEEcC--CCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDE--NWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~--~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+++.|++++.  .....+.||+.+..
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~  223 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI  223 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence            35799999999999997  55677888876543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=96.79  E-value=0.0016  Score=43.94  Aligned_cols=31  Identities=13%  Similarity=0.126  Sum_probs=23.8

Q ss_pred             CCeeecCCCCCcEEEcC----CCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDE----NWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~----~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+.+.|++++.    .....+.||+.+..
T Consensus       190 ~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          190 PRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             CEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             CeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence            46799999999999987    33347888875543

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=96.79  E-value=0.0022  Score=41.40  Aligned_cols=103  Identities=15%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             CCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccc----hhhccccccC
Q 041845           32 GTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRER----QLRLLGSRIL  107 (143)
Q Consensus        32 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~----~~~~~~~~~~  107 (143)
                      .+|.+++... +.++.+.+++.++.|.+.++.-+-.  +..-..+=..|..+++..+|.+.+..-.    ...+.++...
T Consensus        33 vSL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~~~--~~~~~~~i~~~~~i~l~~dG~V~f~~~~s~~~~~~~~~pe~~  109 (229)
T 2yle_A           33 LSLEEILRLY-NQPINEEQAWAVCYQCCGSLRAAAR--RRQPRHRVRSAAQIRVWRDGAVTLAPAADDAGEPPPVAGKLG  109 (229)
T ss_dssp             EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSGGGEEEETTSCEEECCC------------CCS
T ss_pred             ccHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhhhh--cccCCceecCCcceEEecCCceecccccccccccCCCChhhc
Confidence            4788888543 4689999999999999988876621  0111123334678888888877665321    1112333333


Q ss_pred             CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845          108 PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus       108 ~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ....+.+.-|||+|+++|..+-...+.+++
T Consensus       110 ~~~~te~~~IysLG~tLY~ALDygL~e~eE  139 (229)
T 2yle_A          110 YSQCMETEVIESLGIIIYKALDYGLKENEE  139 (229)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHTTTCCTTEE
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCcccc
Confidence            344467788999999999987666655544

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.69  E-value=0.0024  Score=43.79  Aligned_cols=30  Identities=10%  Similarity=0.065  Sum_probs=24.3

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.||+++++....+.||+.+.
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~  251 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVA  251 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEcccccc
Confidence            578999999999999964456788887654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=95.39  E-value=0.026  Score=38.17  Aligned_cols=30  Identities=23%  Similarity=0.166  Sum_probs=26.0

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.|++++.++.+.+.||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            679999999999999877788899987654

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=94.27  E-value=0.054  Score=38.09  Aligned_cols=30  Identities=10%  Similarity=0.222  Sum_probs=25.5

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+.+.||+++.++ +.+.||+.+.+
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            7899999999999998766 88899876544

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=93.04  E-value=0.18  Score=34.15  Aligned_cols=32  Identities=19%  Similarity=0.151  Sum_probs=25.9

Q ss_pred             CCeeecCCCCCcEEEcCC----Ccccccccchhhcc
Q 041845           71 NTIIHRDVKSTNILLDEN----WVAKHSRERQLRLL  102 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~----~~~k~~~~~~~~~~  102 (143)
                      ..++|+|+.+.|++++.+    +.+.+.||+.+.+.
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            579999999999999864    56788898766543

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=92.53  E-value=0.033  Score=37.54  Aligned_cols=30  Identities=13%  Similarity=0.054  Sum_probs=24.6

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.|++++.+....+.||+.+.
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            578999999999999877666788887553

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=90.55  E-value=0.37  Score=32.12  Aligned_cols=29  Identities=17%  Similarity=-0.096  Sum_probs=22.9

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.|++ ..++.+.+.||..+.
T Consensus       173 ~~l~HgDl~~~Nil-~~~~~~~lID~e~a~  201 (301)
T 3dxq_A          173 LAACHCDPLCENFL-DTGERMWIVDWEYSG  201 (301)
T ss_dssp             CEEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred             ceeeccCCCcCCEE-ECCCCEEEEeccccc
Confidence            56899999999999 555667888886554

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=90.33  E-value=0.13  Score=35.79  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=23.5

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.||+++.+ .+.+.|+..+.
T Consensus       227 ~~L~HGDl~~~Nil~~~~-~~~lID~e~a~  255 (397)
T 2olc_A          227 ETLIHGDLHTGSIFASEH-ETKVIDPEFAF  255 (397)
T ss_dssp             CEEECSCCSGGGEEECSS-CEEECCCTTCE
T ss_pred             CceeeCCCCcCcEEEeCC-CeEEEeCcccc
Confidence            678999999999999865 37788876544

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=90.19  E-value=0.19  Score=34.28  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=25.8

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+.+.|++++.++.+.+.||+.+.+
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            5689999999999998777788889875543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=89.83  E-value=0.13  Score=34.67  Aligned_cols=29  Identities=21%  Similarity=0.148  Sum_probs=23.7

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRL  101 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~  101 (143)
                      ..++|+|+++.||+++ + .+.+.||+.+..
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            5689999999999998 4 778888876543

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=89.13  E-value=0.49  Score=33.92  Aligned_cols=16  Identities=31%  Similarity=0.385  Sum_probs=14.5

Q ss_pred             CCeeecCCCCCcEEEc
Q 041845           71 NTIIHRDVKSTNILLD   86 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~   86 (143)
                      ..++|+|+.+.||+++
T Consensus       290 ~v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          290 IVLCHCDLLSSNIINT  305 (458)
T ss_dssp             EEEECSCCCGGGEEEC
T ss_pred             eeEEecCCCCCcEEee
Confidence            4689999999999998

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=88.61  E-value=0.86  Score=29.34  Aligned_cols=54  Identities=9%  Similarity=-0.017  Sum_probs=40.2

Q ss_pred             CCcHHHHHHHHHHHHHHHh-HhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           45 PLQWMWRLKICIGAARGLH-YLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        45 ~~~~~~~~~~~~~i~~~l~-~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                      ..+....+.++.+++.... +++     .-.+--+.|.|++++.++.+++.-.|.....+
T Consensus        81 ~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~~~p~i~hRGi~~~lp  135 (219)
T 4ano_A           81 KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRALEPFFLHVGVKESLP  135 (219)
T ss_dssp             TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTTCCEEESCCEETTTBS
T ss_pred             hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCCCcEEEEEcCCcccCC
Confidence            4456777788888877666 444     35678899999999999999998777654443

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=87.89  E-value=0.43  Score=33.81  Aligned_cols=18  Identities=39%  Similarity=0.549  Sum_probs=15.3

Q ss_pred             CCeeecCCCCCcEEEcCC
Q 041845           71 NTIIHRDVKSTNILLDEN   88 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~   88 (143)
                      ..++|+|+.+.||+++.+
T Consensus       249 ~v~~H~Dl~~gNiL~~~~  266 (429)
T 1nw1_A          249 VTFCHNDLQEGNILLPKA  266 (429)
T ss_dssp             EEEECSCCCGGGEEEEC-
T ss_pred             eEEEeCCCCCCeEEeeCC
Confidence            468999999999999875

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=87.18  E-value=0.24  Score=34.12  Aligned_cols=29  Identities=14%  Similarity=0.112  Sum_probs=22.3

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.||+++.+. +.+.||..+.
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            4689999999999997654 6788876543

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=86.47  E-value=0.83  Score=29.33  Aligned_cols=53  Identities=4%  Similarity=-0.048  Sum_probs=38.8

Q ss_pred             CCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc
Q 041845           45 PLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        45 ~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~  102 (143)
                      ..+....+.++.+++....++++     -+|--+.|.|++++.++.+++.--|.....
T Consensus        77 ~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~NL~f~~~~~p~i~~RGik~~l  129 (215)
T 4ann_A           77 SFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPDELFFTRDGLPIAKTRGLQNVV  129 (215)
T ss_dssp             GSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGGGEEECTTSCEEESCCEETTTB
T ss_pred             hcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecceEEEcCCCCEEEEEccCccCC
Confidence            34566777788877766655542     467889999999999999998877654433

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=84.34  E-value=0.43  Score=33.30  Aligned_cols=30  Identities=20%  Similarity=0.067  Sum_probs=24.3

Q ss_pred             CCeeecCCCCCcEEEcCC----Ccccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDEN----WVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~----~~~k~~~~~~~~  100 (143)
                      ..++|+|+.+.|++++.+    +.+.+.||..+.
T Consensus       220 ~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          220 VVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             EEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             cEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            468999999999999876    577888886554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-24
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-23
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-22
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-21
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-21
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	4e-21
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	7e-21
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-20
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	8e-20
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	8e-20
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-19
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-19
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-19
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-19
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-18
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-18
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-18
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-18
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-18
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-17
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-17
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	7e-17
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	8e-17
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-16
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-16
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-16
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-16
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-16
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-16
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-16
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-16
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-16
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	8e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-15
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-15
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-15
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-15
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-14
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-14
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-13
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-12
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	8e-12
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-11
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-11
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-11
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-10
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-10
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-10
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-09
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-09
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-08
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-07
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	8e-07
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-06
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	9e-06
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-05

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 1e-26
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 19/140 (13%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMI-LVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           ++ LRH +LV L+G  VE K  + +V + MA+G+L D+L +  +  L     LK  +   
Sbjct: 54  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 113

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR-------------- 105
             + YL     N  +HRD+ + N+L+ E+ VAK S     +   S               
Sbjct: 114 EAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 170

Query: 106 -ILPAKLTEKSDVYSFGVLC 124
            +   K + KSDV+SFG+L 
Sbjct: 171 ALREKKFSTKSDVWSFGILL 190

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (232), Expect = 2e-24
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 20/139 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L      ++V   G    + E+ +  + M  G+L   L       +      K+ I   +
Sbjct: 58  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIK 115

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSR------ 105
           GL YL    ++ I+HRDVK +NIL++     K                  +G+R      
Sbjct: 116 GLTYLR--EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE 173

Query: 106 -ILPAKLTEKSDVYSFGVL 123
            +     + +SD++S G+ 
Sbjct: 174 RLQGTHYSVQSDIWSMGLS 192

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 4e-23
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 28/147 (19%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L   RH +++  +G+    + + +V       +L  HL+   +   + +  + I    A+
Sbjct: 58  LRKTRHVNILLFMGYSTAPQ-LAIVTQWCEGSSLYHHLHI-IETKFEMIKLIDIARQTAQ 115

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSRILP--- 108
           G+ YLH     +IIHRD+KS NI L E+   K          SR                
Sbjct: 116 GMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILW 172

Query: 109 -----------AKLTEKSDVYSFGVLC 124
                         + +SDVY+FG++ 
Sbjct: 173 MAPEVIRMQDKNPYSFQSDVYAFGIVL 199

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 1e-22
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 23/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L+H+ LV L    V  + + ++ + M  G+L D L       L     L +    A 
Sbjct: 62  MKQLQHQRLVRLYAV-VTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 120

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
           G+ ++        IHRD+++ NIL+ +    K +     RL+                  
Sbjct: 121 GMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWT 177

Query: 106 ----ILPAKLTEKSDVYSFGVLC 124
               I     T KSDV+SFG+L 
Sbjct: 178 APEAINYGTFTIKSDVWSFGILL 200

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 5e-22
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 27/147 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L++  H ++V L+        + ++ +  A G +   +    +P L       +C     
Sbjct: 63  LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP-LTESQIQVVCKQTLD 121

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLR----------- 100
            L+YLH    N IIHRD+K+ NIL   +   K         ++R  Q R           
Sbjct: 122 ALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMA 178

Query: 101 ---LLGSRILPAKLTEKSDVYSFGVLC 124
              ++           K+DV+S G+  
Sbjct: 179 PEVVMCETSKDRPYDYKADVWSLGITL 205

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 1e-21
 Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 21/141 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
            S+LRH +++ L G+  +   + L+ +    GT+   L                    A 
Sbjct: 60  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYREL--QKLSKFDEQRTATYITELAN 117

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGS------- 104
            L Y H      +IHRD+K  N+LL      K             R+  L G+       
Sbjct: 118 ALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPE 174

Query: 105 RILPAKLTEKSDVYSFGVLCA 125
            I      EK D++S GVLC 
Sbjct: 175 MIEGRMHDEKVDLWSLGVLCY 195

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.8 bits (212), Expect = 1e-21
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 22/141 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  LRH + +   G ++      LV +              HK PLQ +    +  GA +
Sbjct: 69  LQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEV--HKKPLQEVEIAAVTHGALQ 126

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-------HSRERQLRLLGSR-------- 105
           GL YLH    + +IHRDVK+ NILL E  + K                +G+         
Sbjct: 127 GLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVI 183

Query: 106 --ILPAKLTEKSDVYSFGVLC 124
             +   +   K DV+S G+ C
Sbjct: 184 LAMDEGQYDGKVDVWSLGITC 204

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 4e-21
 Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 23/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L H  LV L G  +E   + LV++ M  G L D+L             L +C+    
Sbjct: 54  MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLF-AAETLLGMCLDVCE 112

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
           G+ YL       +IHRD+ + N L+ EN V K S     R +                  
Sbjct: 113 GMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA 169

Query: 106 ----ILPAKLTEKSDVYSFGVLC 124
                  ++ + KSDV+SFGVL 
Sbjct: 170 SPEVFSFSRYSSKSDVWSFGVLM 192

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (206), Expect = 7e-21
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 22/143 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  ++H +LV L+G         ++ + M  G L D+L   ++  +  +  L +    + 
Sbjct: 67  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 126

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
            + YL    +   IHRD+ + N L+ EN + K +     RL+                  
Sbjct: 127 AMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 183

Query: 106 ----ILPAKLTEKSDVYSFGVLC 124
               +   K + KSDV++FGVL 
Sbjct: 184 APESLAYNKFSIKSDVWAFGVLL 206

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 2e-20
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 40/161 (24%)

Query: 1   LSNLRHRHLVSLIGHHVEN----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
              LRH +++  I    ++     ++ LV D    G+L D+L   ++  +     +K+ +
Sbjct: 51  TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL---NRYTVTVEGMIKLAL 107

Query: 57  GAARGLHYLH-----TGTRNTIIHRDVKSTNILLDENWVAK---------------HSRE 96
             A GL +LH     T  +  I HRD+KS NIL+ +N                       
Sbjct: 108 STASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 167

Query: 97  RQLRLLGSRILPA-------------KLTEKSDVYSFGVLC 124
                +G++   A             +  +++D+Y+ G++ 
Sbjct: 168 APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVF 208

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 8e-20
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           + NL H  LV L G   + + + ++ + MA G L ++L        Q    L++C     
Sbjct: 53  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCE 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK--------HSRERQLRLLGSRILPA--- 109
            + YL        +HRD+ + N L+++  V K        +  + +         P    
Sbjct: 112 AMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWS 168

Query: 110 --------KLTEKSDVYSFGVL 123
                   K + KSD+++FGVL
Sbjct: 169 PPEVLMYSKFSSKSDIWAFGVL 190

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (199), Expect = 8e-20
 Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 24/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +   ++ ++V+ +  ++   E+ +V + +A G+L D +               +C    +
Sbjct: 71  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMD---EGQIAAVCRECLQ 127

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHS-----------RERQLRLLGSRILPA 109
            L +LH    N +IHRD+KS NILL  +   K +           + ++  ++G+    A
Sbjct: 128 ALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMA 184

Query: 110 -------KLTEKSDVYSFGVLC 124
                      K D++S G++ 
Sbjct: 185 PEVVTRKAYGPKVDIWSLGIMA 206

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 2e-19
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 24/147 (16%)

Query: 1   LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHK--PPLQWMWRLKICI 56
           L  L+H ++V      ++  N  + +V +    G L   +    K    L   + L++  
Sbjct: 57  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 116

Query: 57  GAARGLHYLH--TGTRNTIIHRDVKSTNILLDENWVAK-----------HSRERQLRLLG 103
                L   H  +   +T++HRD+K  N+ LD     K           H        +G
Sbjct: 117 QLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVG 176

Query: 104 SR-------ILPAKLTEKSDVYSFGVL 123
           +        +      EKSD++S G L
Sbjct: 177 TPYYMSPEQMNRMSYNEKSDIWSLGCL 203

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 2e-19
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 27/147 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENK-EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           + +  H +++SL+G  + ++   ++V   M  G LR+    N          +   +  A
Sbjct: 82  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNF-IRNETHNPTVKDLIGFGLQVA 140

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR-------------- 105
           +G+ +L        +HRD+ + N +LDE +  K +     R +  +              
Sbjct: 141 KGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLP 197

Query: 106 --------ILPAKLTEKSDVYSFGVLC 124
                   +   K T KSDV+SFGVL 
Sbjct: 198 VKWMALESLQTQKFTTKSDVWSFGVLL 224

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 2e-19
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 23/144 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  LRH  LV L    V  + + +V + M++G+L D L       L+    + +    A 
Sbjct: 66  MKKLRHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 124

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
           G+ Y+    R   +HRD+++ NIL+ EN V K +     RL+                  
Sbjct: 125 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT 181

Query: 106 ----ILPAKLTEKSDVYSFGVLCA 125
                L  + T KSDV+SFG+L  
Sbjct: 182 APEAALYGRFTIKSDVWSFGILLT 205

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (194), Expect = 4e-19
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 27/147 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   ++  ++++ + M  G+L D     +      +  + +  G A 
Sbjct: 81  MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSL-DSFLRQNDGQFTVIQLVGMLRGIAA 139

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
           G+ YL        +HRD+ + NIL++ N V K S     R L                  
Sbjct: 140 GMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIP 196

Query: 106 --------ILPAKLTEKSDVYSFGVLC 124
                   I   K T  SDV+S+G++ 
Sbjct: 197 IRWTAPEAIQYRKFTSASDVWSYGIVM 223

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 2e-18
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 34/151 (22%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMW 50
            H ++++L+G       + L  +    G L D L  +                  L    
Sbjct: 69  HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 128

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLR 100
            L      ARG+ YL    +   IHRD+ + NIL+ EN+VAK              ++  
Sbjct: 129 LLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 185

Query: 101 LLGSR-------ILPAKLTEKSDVYSFGVLC 124
                       +  +  T  SDV+S+GVL 
Sbjct: 186 GRLPVRWMAIESLNYSVYTTNSDVWSYGVLL 216

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (190), Expect = 2e-18
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 22/141 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S      +V +        ++  + D M  G L  HL  +       M      I    
Sbjct: 61  VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEI--IL 118

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSRILPA-- 109
           GL ++H      +++RD+K  NILLDE+   +          S+++    +G+    A  
Sbjct: 119 GLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPE 175

Query: 110 ------KLTEKSDVYSFGVLC 124
                      +D +S G + 
Sbjct: 176 VLQKGVAYDSSADWFSLGCML 196

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 3e-18
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 26/145 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L + ++V LIG   + + ++LV +    G L   L    +  +      ++    + 
Sbjct: 63  MHQLDNPYIVRLIGV-CQAEALMLVMEMAGGGPLHKFLVG-KREEIPVSNVAELLHQVSM 120

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
           G+ YL        +HRD+ + N+LL     AK S     + LG+                
Sbjct: 121 GMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLK 177

Query: 106 ------ILPAKLTEKSDVYSFGVLC 124
                 I   K + +SDV+S+GV  
Sbjct: 178 WYAPECINFRKFSSRSDVWSYGVTM 202

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.4 bits (187), Expect = 3e-18
 Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 45/166 (27%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN------------------- 41
           ++   + ++V L+G     K M L+++ MA G L + L +                    
Sbjct: 70  MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARV 129

Query: 42  ---HKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQ 98
                PPL    +L I    A G+ YL        +HRD+ + N L+ EN V K +    
Sbjct: 130 SSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGL 186

Query: 99  LRLLGS--------------------RILPAKLTEKSDVYSFGVLC 124
            R + S                     I   + T +SDV+++GV+ 
Sbjct: 187 SRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVL 232

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 77.0 bits (189), Expect = 4e-18
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 23/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S LRH  LV+L     ++ EM+++Y+ M+ G L + + + H   +     ++      +
Sbjct: 77  MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHN-KMSEDEAVEYMRQVCK 135

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENW----------VAKHSRERQLRLLGSR----- 105
           GL ++H    N  +H D+K  NI+               +  H   +Q   + +      
Sbjct: 136 GLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA 192

Query: 106 ----ILPAKLTEKSDVYSFGVL 123
                    +   +D++S GVL
Sbjct: 193 APEVAEGKPVGYYTDMWSVGVL 214

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 5e-18
 Identities = 36/167 (21%), Positives = 53/167 (31%), Gaps = 31/167 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
              L H ++V   GH  E     L  +  + G L D +  +    +      +       
Sbjct: 57  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMA 114

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSRILPAK- 110
           G+ YLH      I HRD+K  N+LLDE    K              + RLL         
Sbjct: 115 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 171

Query: 111 -----------LTEKSDVYSFGV-----LCARPAMLPMAENEQEVEH 141
                        E  DV+S G+     L         +++ QE   
Sbjct: 172 VAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD 218

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 1e-17
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
           L  L+H ++V             K ++LV + M  GTL+ +L       ++       C 
Sbjct: 62  LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCR 119

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILL-DENWVAK-----HSRERQLRLLGSR----- 105
              +GL +LHT T   IIHRD+K  NI +       K      +  ++     +      
Sbjct: 120 QILKGLQFLHTRTPP-IIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPE 178

Query: 106 -----ILPAKLTEKSDVYSFGVL 123
                +   K  E  DVY+FG+ 
Sbjct: 179 FMAPEMYEEKYDESVDVYAFGMC 201

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 73.9 bits (181), Expect = 4e-17
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 23/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           ++ L H  L++L     +  EM+L+ + ++ G L D +       +     +     A  
Sbjct: 80  MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDY-KMSEAEVINYMRQACE 138

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK------------HSRERQLRLLGSR--- 105
           GL ++H    ++I+H D+K  NI+ +    +             +  E       +    
Sbjct: 139 GLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFA 195

Query: 106 ----ILPAKLTEKSDVYSFGVLC 124
               +    +   +D+++ GVL 
Sbjct: 196 APEIVDREPVGFYTDMWAIGVLG 218

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 7e-17
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 37/154 (24%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPP--------------LQWMW 50
           +H+++++L+G   ++  + ++ +  ++G LR++L     P               L    
Sbjct: 77  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 136

Query: 51  RLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGS------ 104
            +      ARG+ YL        IHRD+ + N+L+ E+ V K +     R +        
Sbjct: 137 LVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 193

Query: 105 --------------RILPAKLTEKSDVYSFGVLC 124
                          +     T +SDV+SFGVL 
Sbjct: 194 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 227

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 8e-17
 Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 24/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H H+V LIG   EN  + ++ +    G LR  L       L     +      + 
Sbjct: 62  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYS-LDLASLILYAYQLST 119

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
            L YL        +HRD+ + N+L+  N   K       R +                  
Sbjct: 120 ALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWM 176

Query: 106 ----ILPAKLTEKSDVYSFGVLC 124
               I   + T  SDV+ FGV  
Sbjct: 177 APESINFRRFTSASDVWMFGVCM 199

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 1e-16
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 44/162 (27%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKP------------------- 44
             H ++V+L+G    +  + L+++    G L ++L +  +                    
Sbjct: 98  GSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED 157

Query: 45  --PLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWV--------AKHS 94
              L +   L      A+G+ +L      + +HRD+ + N+L+    V        A+  
Sbjct: 158 LNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDI 214

Query: 95  RERQLRLLGSR------------ILPAKLTEKSDVYSFGVLC 124
                 ++               +     T KSDV+S+G+L 
Sbjct: 215 MSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILL 256

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 1e-16
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 27/144 (18%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +  L + ++V +IG   E +  +LV +    G L  +L  N    ++    +++    + 
Sbjct: 62  MQQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSM 118

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
           G+ YL     +  +HRD+ + N+LL     AK S     + L +                
Sbjct: 119 GMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVK 175

Query: 106 ------ILPAKLTEKSDVYSFGVL 123
                 I   K + KSDV+SFGVL
Sbjct: 176 WYAPECINYYKFSSKSDVWSFGVL 199

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 1e-16
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 26/145 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           + +L HR+L+ L G  V    M +V +    G+L D     H+         +  +  A 
Sbjct: 65  MHSLDHRNLIRLYG-VVLTPPMKMVTELAPLGSLLDR-LRKHQGHFLLGTLSRYAVQVAE 122

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILPA- 109
           G+ YL        IHRD+ + N+LL    + K             +    +   R +P  
Sbjct: 123 GMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFA 179

Query: 110 ----------KLTEKSDVYSFGVLC 124
                       +  SD + FGV  
Sbjct: 180 WCAPESLKTRTFSHASDTWMFGVTL 204

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 25/143 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           ++++ + H+  L+        + L+   M  G L D+    HK  +   + L  C+  A+
Sbjct: 65  MASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDY-VREHKDNIGSQYLLNWCVQIAK 122

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILPA- 109
           G++YL       ++HRD+ + N+L+      K           + E++    G ++    
Sbjct: 123 GMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKW 179

Query: 110 ---------KLTEKSDVYSFGVL 123
                      T +SDV+S+GV 
Sbjct: 180 MALESILHRIYTHQSDVWSYGVT 202

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 2e-16
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 25/145 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +    H +++ L G   + K M+++ + M  G L              +  + +  G A 
Sbjct: 63  MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKF-LREKDGEFSVLQLVGMLRGIAA 121

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
           G+ YL        +HRD+ + NIL++ N V K S     R+L                  
Sbjct: 122 GMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIR 178

Query: 106 ------ILPAKLTEKSDVYSFGVLC 124
                 I   K T  SDV+SFG++ 
Sbjct: 179 WTAPEAISYRKFTSASDVWSFGIVM 203

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 20/139 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           LS + H  ++ + G   + +++ ++ D +  G L   L  + + P          +    
Sbjct: 58  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEV--CL 115

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--------------- 105
            L YLH      II+RD+K  NILLD+N   K +     + +                  
Sbjct: 116 ALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEV 172

Query: 106 ILPAKLTEKSDVYSFGVLC 124
           +      +  D +SFG+L 
Sbjct: 173 VSTKPYNKSIDWWSFGILI 191

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 3e-16
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 39/156 (25%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYN----------------NHKPPLQW 48
            H ++V+L+G        +++ +    G L + L                  + +  L  
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 49  MWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR--- 105
              L      A+G+ +L        IHRD+ + NILL    + K       R + +    
Sbjct: 145 EDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY 201

Query: 106 -----------------ILPAKLTEKSDVYSFGVLC 124
                            I     T +SDV+S+G+  
Sbjct: 202 VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFL 237

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 4e-16
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 25/143 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           +S L H   V L     +++++         G L  ++                      
Sbjct: 62  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR--KIGSFDETCTRFYTAEIVS 119

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK---------HSRERQLRLLGSR------ 105
            L YLH      IIHRD+K  NILL+E+   +          S E +     S       
Sbjct: 120 ALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQY 176

Query: 106 -----ILPAKLTEKSDVYSFGVL 123
                +      + SD+++ G +
Sbjct: 177 VSPELLTEKSACKSSDLWALGCI 199

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 8e-16
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 24/145 (16%)

Query: 1   LSNLRHRHLVSLIGHHV----ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
           L    H ++V L         + +  + +        L  +L    +P +       +  
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSR----------- 105
              RGL +LH    + ++HRD+K  NIL+  +   K +     R+   +           
Sbjct: 124 QLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLW 180

Query: 106 ------ILPAKLTEKSDVYSFGVLC 124
                 +L +      D++S G + 
Sbjct: 181 YRAPEVLLQSSYATPVDLWSVGCIF 205

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 8e-16
 Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 23/144 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L+  RHR+++ L       +E++++++ ++   + + + N     L     +        
Sbjct: 55  LNIARHRNILHLHESFESMEELVMIFEFISGLDIFERI-NTSAFELNEREIVSYVHQVCE 113

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK------------HSRERQLRLLGSR--- 105
            L +LH    + I H D++  NI+      +                +    L  +    
Sbjct: 114 ALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYY 170

Query: 106 ----ILPAKLTEKSDVYSFGVLCA 125
                    ++  +D++S G L  
Sbjct: 171 APEVHQHDVVSTATDMWSLGTLVY 194

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 2e-15
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 24/142 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L H +++ L+        + LV+D M           ++   L         +   +
Sbjct: 54  LQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVII--KDNSLVLTPSHIKAYMLMTLQ 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKL--------- 111
           GL YLH   ++ I+HRD+K  N+LLDEN V K +     +  GS                
Sbjct: 112 GLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRA 168

Query: 112 ----------TEKSDVYSFGVL 123
                         D+++ G +
Sbjct: 169 PELLFGARMYGVGVDMWAVGCI 190

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 68.2 bits (166), Expect = 3e-15
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 28/141 (19%)

Query: 6   HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYL 65
           H +++ L   +  N    LV+D M +G L D+L    K  L      KI       +  L
Sbjct: 69  HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYL--TEKVTLSEKETRKIMRALLEVICAL 126

Query: 66  HTGTRNTIIHRDVKSTNILLDENWVAK----------HSRERQLRLLGSRILPA------ 109
           H   +  I+HRD+K  NILLD++   K             E+   + G+    A      
Sbjct: 127 H---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIEC 183

Query: 110 -------KLTEKSDVYSFGVL 123
                     ++ D++S GV+
Sbjct: 184 SMNDNHPGYGKEVDMWSTGVI 204

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 3e-15
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 27/144 (18%)

Query: 4   LRHRHLVSLIGH----HVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
            +  H+V ++      +   K +++V +C+  G L   + +            +I     
Sbjct: 62  SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIG 121

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLD---ENWVAKHSRERQLRLLGSR----------- 105
             + YLH      I HRDVK  N+L      N + K +     +   S            
Sbjct: 122 EAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPY 178

Query: 106 ------ILPAKLTEKSDVYSFGVL 123
                 + P K  +  D++S GV+
Sbjct: 179 YVAPEVLGPEKYDKSCDMWSLGVI 202

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 4e-15
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 23/144 (15%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLH 63
             H  L  +       + +  V + +  G L  H+ + HK  L              GL 
Sbjct: 60  WEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATF--YAAEIILGLQ 117

Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWVAK-----------HSRERQLRLLGSR------- 105
           +LH      I++RD+K  NILLD++   K               +     G+        
Sbjct: 118 FLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEI 174

Query: 106 ILPAKLTEKSDVYSFGVLCARPAM 129
           +L  K     D +SFGVL     +
Sbjct: 175 LLGQKYNHSVDWWSFGVLLYEMLI 198

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 2e-14
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK--------PPLQWMWRL 52
           +      H+V L+G   + +  +++ + M RG L+ +L +            P      +
Sbjct: 77  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 136

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGS 104
           ++    A G+ YL+    N  +HRD+ + N ++ E++  K       R +  
Sbjct: 137 QMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 185

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 2e-14
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 23/144 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L H ++V L+       ++ LV++ + +  L+  +  +    +             +
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQ 113

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
           GL + H    + ++HRD+K  N+L++     K +     R  G  +              
Sbjct: 114 GLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRA 170

Query: 110 --------KLTEKSDVYSFGVLCA 125
                     +   D++S G + A
Sbjct: 171 PEILLGCKYYSTAVDIWSLGCIFA 194

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.0 bits (160), Expect = 3e-14
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 20/139 (14%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  +    LV L     +N  + +V + +A G +  HL                      
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVL 152

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENW--------VAKHSRERQLRLLGSR------- 105
              YLH      +I+RD+K  N+L+D+           AK  + R   L G+        
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEI 209

Query: 106 ILPAKLTEKSDVYSFGVLC 124
           IL     +  D ++ GVL 
Sbjct: 210 ILSKGYNKAVDWWALGVLI 228

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.5 bits (154), Expect = 2e-13
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 25/144 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  ++H ++V+L   +     + L+   ++ G L D +    K         ++      
Sbjct: 61  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE--KGFYTERDASRLIFQVLD 118

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILL---DENWVAKHSRERQLRLLGS------------- 104
            + YLH      I+HRD+K  N+L    DE+     S     ++                
Sbjct: 119 AVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGY 175

Query: 105 ----RILPAKLTEKSDVYSFGVLC 124
                +     ++  D +S GV+ 
Sbjct: 176 VAPEVLAQKPYSKAVDCWSIGVIA 199

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 3e-13
 Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 23/144 (15%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L N RH  L +L      +  +  V +    G L  HL        +           A 
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFY-----GAE 113

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK-----------HSRERQLRLLGSR---- 105
            +  L       +++RD+K  N++LD++   K                     G+     
Sbjct: 114 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLA 173

Query: 106 ---ILPAKLTEKSDVYSFGVLCAR 126
              +         D +  GV+   
Sbjct: 174 PEVLEDNDYGRAVDWWGLGVVMYE 197

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 61.7 bits (149), Expect = 8e-13
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 30/148 (20%)

Query: 1   LSNLRHRHLVSLIGHHVENKE----MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
            + L H  +V++               +V + +   TLRD ++     P+     +++  
Sbjct: 61  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIA 118

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVA--------------KHSRERQLRLL 102
            A + L++ H   +N IIHRDVK  NI++                     +S  +   ++
Sbjct: 119 DACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI 175

Query: 103 GSR-------ILPAKLTEKSDVYSFGVL 123
           G+             +  +SDVYS G +
Sbjct: 176 GTAQYLSPEQARGDSVDARSDVYSLGCV 203

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 1e-12
 Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 29/150 (19%)

Query: 1   LSNLRHRHLVSLIGHHVENKE------MILVYDCMARGTLRDHL-YNNHKPPLQWMWRLK 53
           +  L H ++V L      + E      + LV D +     R    Y+  K  L  ++   
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKL 126

Query: 54  ICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDEN-----------WVAKHSRERQLRLL 102
                 R L Y+H      I HRD+K  N+LLD +                  E  +  +
Sbjct: 127 YMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYI 183

Query: 103 GSRILPA--------KLTEKSDVYSFGVLC 124
            SR   A          T   DV+S G + 
Sbjct: 184 CSRYYRAPELIFGATDYTSSIDVWSAGCVL 213

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 1e-12
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 18/107 (16%)

Query: 1   LSNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNN--------------HKPP 45
           +    H ++V+L+G   +    ++++ +    G L  +L +               +K  
Sbjct: 71  IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDF 130

Query: 46  LQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
           L     +      A+G+ +L        IHRD+ + NILL E  V K
Sbjct: 131 LTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVK 174

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 8e-12
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 26/145 (17%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  ++H ++++L   +    ++IL+ + +A G L D      K  L      +       
Sbjct: 67  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF--LAEKESLTEEEATEFLKQILN 124

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAK--------------HSRERQLRLLGSR- 105
           G++YLH      I H D+K  NI+L +  V K                      + G+  
Sbjct: 125 GVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPE 181

Query: 106 ------ILPAKLTEKSDVYSFGVLC 124
                 +    L  ++D++S GV+ 
Sbjct: 182 FVAPEIVNYEPLGLEADMWSIGVIT 206

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 1   LSNLRHRHLVSLIG----HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICI 56
           L   RH +++ +        +E  + + +   +    L   L       L          
Sbjct: 60  LLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLL---KTQHLSNDHICYFLY 116

Query: 57  GAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
              RGL Y+H      ++HRD+K +N+LL+     K
Sbjct: 117 QILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLK 149

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 58.4 bits (140), Expect = 1e-11
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 24/143 (16%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L+H ++V L       K ++LV++ + +      L +  +  L+ +      +    
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLK--KLLDVCEGGLESVTAKSFLLQLLN 111

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPA----------- 109
           G+ Y H      ++HRD+K  N+L++     K +     R  G  +              
Sbjct: 112 GIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRA 168

Query: 110 --------KLTEKSDVYSFGVLC 124
                   K +   D++S G + 
Sbjct: 169 PDVLMGSKKYSTTIDIWSVGCIF 191

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 7e-11
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 29/147 (19%)

Query: 1   LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKI 54
           L ++RH +++ L+     ++      +  LV   M  GT    L  +    L       +
Sbjct: 71  LKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM--GTDLGKLMKHE--KLGEDRIQFL 126

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILP------ 108
                +GL Y+H      IIHRD+K  N+ ++E+   K       R   S +        
Sbjct: 127 VYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRW 183

Query: 109 ----------AKLTEKSDVYSFGVLCA 125
                      + T+  D++S G + A
Sbjct: 184 YRAPEVILNWMRYTQTVDIWSVGCIMA 210

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.2 bits (132), Expect = 1e-10
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
              ++    +  I       +  ++   +   +L D  +N           L +      
Sbjct: 56  YKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDL-FNFCSRKFSLKTVLLLADQMIS 114

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKH 93
            + Y+H       IHRDVK  N L+        
Sbjct: 115 RIEYIH---SKNFIHRDVKPDNFLMGLGKKGNL 144

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 54.4 bits (130), Expect = 3e-10
 Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 5   RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHY 64
               + ++     E    +LV D +  G   + L +                     +  
Sbjct: 59  GCTGIPNVYYFGQEGLHNVLVIDLL--GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQS 116

Query: 65  LHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLGSRILPAKLTEKSDVY 118
           +H     ++++RD+K  N L+        +    +     +     +T++   Y
Sbjct: 117 IH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPY 167

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 5e-10
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAAR 60
           L  L+H+++V L      +K++ LV++   +   +     N     + +          +
Sbjct: 55  LKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKS--FLFQLLK 112

Query: 61  GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKH 93
           GL + H      ++HRD+K  N+L++ N   K 
Sbjct: 113 GLGFCH---SRNVLHRDLKPQNLLINRNGELKL 142

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 1   LSNLRHRHLVSLIG--------HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRL 52
           L  L+H ++V+LI         ++     + LV+D               K  L  + R+
Sbjct: 63  LQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRV 122

Query: 53  KICIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAK 92
              +     L+ L+   RN I+HRD+K+ N+L+  + V K
Sbjct: 123 MQML-----LNGLYYIHRNKILHRDMKAANVLITRDGVLK 157

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 9e-09
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 3   NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGL 62
           +     ++ L+         +L+ +                  LQ              +
Sbjct: 65  SSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGA-LQEELARSFFWQVLEAV 123

Query: 63  HYLHTGTRNTIIHRDVKSTNILLDEN 88
            + H      ++HRD+K  NIL+D N
Sbjct: 124 RHCH---NCGVLHRDIKDENILIDLN 146

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 27/146 (18%)

Query: 1   LSNLRHR-HLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAA 59
           L ++R    LV+L        ++ L+ D +  G L  HL    +     +      I   
Sbjct: 82  LEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQ-----IYVG 136

Query: 60  RGLHYLHTGTRNTIIHRDVKSTNILLDEN------------WVAKHSRERQLRLLGS--- 104
             +  L    +  II+RD+K  NILLD N                   ER     G+   
Sbjct: 137 EIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEY 196

Query: 105 ------RILPAKLTEKSDVYSFGVLC 124
                 R   +   +  D +S GVL 
Sbjct: 197 MAPDIVRGGDSGHDKAVDWWSLGVLM 222

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 1   LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGA 58
           L +++H +++ L+      + +    D      L     NN      L       +    
Sbjct: 71  LKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQI 130

Query: 59  ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKH 93
            RGL Y+H      IIHRD+K +N+ ++E+   K 
Sbjct: 131 LRGLKYIH---SADIIHRDLKPSNLAVNEDCELKI 162

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 8e-07
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 6   HRHLVSLIG--HHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLH 63
             ++++L        ++   LV++ +     +          L             + L 
Sbjct: 89  GPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALD 143

Query: 64  YLHTGTRNTIIHRDVKSTNILLDEN 88
           Y H      I+HRDVK  N+++D  
Sbjct: 144 YCH---SMGIMHRDVKPHNVMIDHE 165

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 4   LRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLH 63
              R L  L G  V       VY       L + +       ++     ++       + 
Sbjct: 63  NEFRALQKLQGLAV-----PKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVA 117

Query: 64  YLHTGTRNTIIHRDVKSTNILLDENWV 90
             +      I+H D+   N+L+ E  +
Sbjct: 118 KFY---HRGIVHGDLSQYNVLVSEEGI 141

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 9e-06
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 1   LSNLRHRHLVSLIGH---HVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIG 57
             ++   H++ L+ H      N   +++   +    L   +       +  ++  +I   
Sbjct: 74  EDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ 133

Query: 58  AARGLHYLHTGTRNTIIHRDVKSTNILLDEN 88
              GL Y+H   R  IIH D+K  N+L++  
Sbjct: 134 LLLGLDYMHR--RCGIIHTDIKPENVLMEIV 162

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 1   LSNLRHRHLVSLIGHHV------ENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKI 54
           +  + H++++SL+          E +++ LV + M     +                  +
Sbjct: 70  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELD-----HERMSYL 124

Query: 55  CIGAARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKH 93
                 G+ +LH      IIHRD+K +NI++  +   K 
Sbjct: 125 LYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKI 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.98
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.98
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.98
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.98
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.98
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.97
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.97
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.97
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.96
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.96
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.96
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.96
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.96
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.96
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.95
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.95
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.94
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.86
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.61
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	96.88
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.27
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	92.72
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	91.65
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	88.21

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-39  Score=212.96  Aligned_cols=132  Identities=25%  Similarity=0.281  Sum_probs=117.6

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++.+++||||+++|+|.+.+...  ..+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        60 l~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~~--~~l~e~~~~~i~~qi~~al~~lH~---~~ivHrDiKp  134 (263)
T d2j4za1          60 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHS---KRVIHRDIKP  134 (263)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCG
T ss_pred             HHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeeeecc
Confidence            35789999999999999999999999999999999998654  368899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+.                .+||.+....++.++||||+||++|+|+++..|+...
T Consensus       135 ~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  207 (263)
T d2j4za1         135 ENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  207 (263)
T ss_dssp             GGEEECTTSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccceecCCCCEeecccceeeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC
Confidence            99999999999999999764                2344455667899999999999999999998888654

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=212.54  Aligned_cols=131  Identities=21%  Similarity=0.286  Sum_probs=116.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++.+++||||+++|+|.+++.++   .+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        71 l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp  144 (293)
T d1yhwa1          71 MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKS  144 (293)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcH
Confidence            35689999999999999999999999999999999988543   68899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+..                  +|+.+..+.++.++||||+||++|+|+++..|+...
T Consensus       145 ~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  219 (293)
T d1yhwa1         145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (293)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCC
Confidence            999999999999999998642                  233345567899999999999999999998888643

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=216.52  Aligned_cols=133  Identities=23%  Similarity=0.295  Sum_probs=117.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++++|.+++.+++||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+  +++|+||||||
T Consensus        58 l~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qil~aL~yLH~--~~~IiHRDiKP  133 (322)
T d1s9ja_          58 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKP  133 (322)
T ss_dssp             GGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH--HHCCCCSCCSG
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHH--hCCEEccccCH
Confidence            56789999999999999999999999999999999999654  368899999999999999999996  24899999999


Q ss_pred             CcEEEcCCCcccccccchhh----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++.+|++|||++.                .+|+.+....++.++||||+||++|||+++..|+...
T Consensus       134 ~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~  206 (322)
T d1s9ja_         134 SNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  206 (322)
T ss_dssp             GGEEECTTCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred             HHeeECCCCCEEEeeCCCccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            99999999999999999865                2344455678999999999999999999998887643

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-39  Score=212.47  Aligned_cols=132  Identities=23%  Similarity=0.248  Sum_probs=114.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..++||||+++|+|.+++..  ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        57 l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~--~~~l~e~~~~~i~~qi~~al~ylH~---~~IiHrDiKp  131 (271)
T d1nvra_          57 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKP  131 (271)
T ss_dssp             HHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBT--TTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCG
T ss_pred             HHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---cCCccCcccH
Confidence            4578999999999999999999999999999999999854  3478899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc--------------------cccccCCCCC-CCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRL--------------------LGSRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++.+|++|||.+..                    +||.+....+ +.++||||+||++|||+++..|+...
T Consensus       132 ~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~  209 (271)
T d1nvra_         132 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  209 (271)
T ss_dssp             GGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSS
T ss_pred             HHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCC
Confidence            999999999999999998752                    2222333444 56799999999999999988887543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-38  Score=211.96  Aligned_cols=132  Identities=25%  Similarity=0.368  Sum_probs=111.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++|++.+++.+++||||+++|+|.+++... ...+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        81 l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~-~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHrDlKp  156 (299)
T d1jpaa_          81 MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAA  156 (299)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccc-cCCCCHHHHHHHHHHHHHHHHHHhh---CCCccCcccc
Confidence            46889999999999999999999999999999999988543 3468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-----------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-----------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-----------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +|||++.++.+|++|||+++..                       |+......++.++|||||||++|||+| +..|+..
T Consensus       157 ~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~  236 (299)
T d1jpaa_         157 RNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWD  236 (299)
T ss_dssp             GGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCC
Confidence            9999999999999999986421                       222345678889999999999999998 6777654

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-38  Score=212.09  Aligned_cols=133  Identities=23%  Similarity=0.308  Sum_probs=115.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||++++++.+++.+++||||+++|+|.+++.+. ...+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        63 l~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH~---~~ivHrDiKp  138 (288)
T d2jfla1          63 LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKA  138 (288)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCEEEeecCh
Confidence            35689999999999999999999999999999999987543 3468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------cccccc-----CCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRI-----LPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~-----~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+.                  .+|+.+     ....++.++||||+||++|||+++..|+...
T Consensus       139 ~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~  218 (288)
T d2jfla1         139 GNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL  218 (288)
T ss_dssp             GGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             hheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC
Confidence            99999999999999999763                  122222     2345789999999999999999998888654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-38  Score=211.95  Aligned_cols=131  Identities=27%  Similarity=0.403  Sum_probs=115.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++++|.+++..+++|||+++|++.+++.......+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        67 l~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp  143 (287)
T d1opja_          67 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAA  143 (287)
T ss_dssp             HHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSG
T ss_pred             HHhCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH---CCcccCcccc
Confidence            3568999999999999999999999999999999999976666788999999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +|||++.++.+|++|||.++..                   |+.+....++.++|||||||++|||+++..|+
T Consensus       144 ~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~  216 (287)
T d1opja_         144 RNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSP  216 (287)
T ss_dssp             GGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             CeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCC
Confidence            9999999999999999987532                   33344567889999999999999999954443

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=206.09  Aligned_cols=131  Identities=28%  Similarity=0.395  Sum_probs=112.7

Q ss_pred             CCCCCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC--ee
Q 041845            1 LSNLRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT--II   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~--i~   74 (143)
                      |++++|||||++++++.+    +..+++||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   ++  ++
T Consensus        62 l~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~---~~~~Ii  136 (270)
T d1t4ha_          62 LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHT---RTPPII  136 (270)
T ss_dssp             HTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCC
T ss_pred             HHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHH---CCCCEE
Confidence            478999999999999864    34689999999999999999654  368889999999999999999997   66  99


Q ss_pred             ecCCCCCcEEEc-CCCcccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLD-ENWVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~-~~~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||||||+|||++ +++.+|++|||.+.               +++++...+.++.++||||+||++|||+++..|+..
T Consensus       137 HrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~  214 (270)
T d1t4ha_         137 HRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSE  214 (270)
T ss_dssp             CSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             eCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCC
Confidence            999999999997 47899999999875               233334556789999999999999999999888764

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-38  Score=210.54  Aligned_cols=131  Identities=19%  Similarity=0.213  Sum_probs=115.9

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||+++++++.+++.+|+||||+++|+|.+++...  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        63 ~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~  137 (288)
T d1uu3a_          63 SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPE  137 (288)
T ss_dssp             HHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCcc
Confidence            5689999999999999999999999999999999988544  378899999999999999999998   99999999999


Q ss_pred             cEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++.+|++|||.+..                    +||.+....++.++||||+||++|+|+++..|+...
T Consensus       138 NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (288)
T d1uu3a_         138 NILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  213 (288)
T ss_dssp             GEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc
Confidence            99999999999999998742                    223334567889999999999999999998888754

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-37  Score=210.65  Aligned_cols=133  Identities=20%  Similarity=0.205  Sum_probs=118.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++.+++||||+++|+|.+++.+.  ..+++..++.++.|++.|+.|||+   ++++||||||
T Consensus        59 l~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~---~~iiHRDlKP  133 (337)
T d1o6la_          59 LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKL  133 (337)
T ss_dssp             HHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCG
T ss_pred             HHhCCCCCEEEEEeeeccccccccceeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhh---cCccccccCH
Confidence            35789999999999999999999999999999999998654  367889999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +|||++.++.+|++|||.+.                  .+|+.+....++.++|+||+||++|||++|..|+....
T Consensus       134 ~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~  209 (337)
T d1o6la_         134 ENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD  209 (337)
T ss_dssp             GGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcC
Confidence            99999999999999999874                  23444556788999999999999999999888876543

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-37  Score=208.25  Aligned_cols=132  Identities=18%  Similarity=0.196  Sum_probs=113.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++.+++||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   ++++|||+||
T Consensus        61 l~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp  135 (307)
T d1a06a_          61 LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKP  135 (307)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecc
Confidence            35789999999999999999999999999999999999553  478999999999999999999998   8999999999


Q ss_pred             CcEEEc---CCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLD---ENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~---~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||++.   .++.+|++|||.+.                 .+|+.+....++.++||||+||++|+|+++..|+...
T Consensus       136 ~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  212 (307)
T d1a06a_         136 ENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE  212 (307)
T ss_dssp             GGEEESSSSTTCCEEECCC------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC
Confidence            999995   46789999999764                 2344455667899999999999999999999888654

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-38  Score=207.81  Aligned_cols=137  Identities=22%  Similarity=0.307  Sum_probs=108.1

Q ss_pred             CCCCCCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcC--CCCCCcHHHHHHHHHHHHHHHhHhhcCC--CCCee
Q 041845            1 LSNLRHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNN--HKPPLQWMWRLKICIGAARGLHYLHTGT--RNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lh~~~--~~~i~   74 (143)
                      |++++||||+++++++.+  .+.+++||||+++|+|.+++.+.  ....+++..++.++.|++.|+.|||+..  ..+++
T Consensus        57 l~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~Ii  136 (269)
T d2java1          57 LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVL  136 (269)
T ss_dssp             TTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            578999999999999865  45689999999999999988532  2457899999999999999999999711  12499


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhc------------------cccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRL------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||||||+||+++.++.+|++|||.+..                  +|+.+....++.++|||||||++|||+++..|+..
T Consensus       137 HrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~  216 (269)
T d2java1         137 HRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTA  216 (269)
T ss_dssp             ---CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             eCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCC
Confidence            999999999999999999999998742                  23334556789999999999999999999888764


Q ss_pred             c
Q 041845          137 Q  137 (143)
Q Consensus       137 ~  137 (143)
                      .
T Consensus       217 ~  217 (269)
T d2java1         217 F  217 (269)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.7e-37  Score=211.34  Aligned_cols=133  Identities=19%  Similarity=0.211  Sum_probs=116.7

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||++++++|.+++.+++||||+++|+|.+.+... ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        80 l~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~-~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp  155 (352)
T d1koba_          80 MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKP  155 (352)
T ss_dssp             HTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCG
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---CCeeeccccc
Confidence            46889999999999999999999999999999999887443 4578999999999999999999998   9999999999


Q ss_pred             CcEEEc--CCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLD--ENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~--~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++  ..+.+|++|||++..                 +|+.+....++.++||||+||++|+|+++..|+...
T Consensus       156 ~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  231 (352)
T d1koba_         156 ENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  231 (352)
T ss_dssp             GGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             ccccccccCCCeEEEeecccceecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            999997  568899999998752                 334445667899999999999999999998888653

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=204.97  Aligned_cols=130  Identities=31%  Similarity=0.416  Sum_probs=110.6

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||++++|++.+++..++||||+++|+|.+++... ...+++..+..++.|++.|+.|+|+   ++++||||||+
T Consensus        55 ~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~  130 (263)
T d1sm2a_          55 MKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAAR  130 (263)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGG
T ss_pred             HhcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchh
Confidence            5689999999999999999999999999999999988543 3567889999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhccccc-cCCCC
Q 041845           82 NILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAML-PMAEN  135 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~-~~~~~  135 (143)
                      ||+++.++.+|++|||+++.                   +|+.+....++.++|||||||++|||+|+ ..++.
T Consensus       131 Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~  204 (263)
T d1sm2a_         131 NCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE  204 (263)
T ss_dssp             GEEECGGGCEEECSCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             heeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCC
Confidence            99999999999999997642                   23334556789999999999999999984 44333

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-37  Score=207.56  Aligned_cols=132  Identities=22%  Similarity=0.266  Sum_probs=117.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++.+++||||+++|++...+...  ..+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        58 l~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp  132 (316)
T d1fota_          58 LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKP  132 (316)
T ss_dssp             HHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCG
T ss_pred             HHhccCcChhheeeeEeeCCeeeeEeeecCCcccccccccc--ccccccHHHHHHHHHHHhhhhhcc---CcEEccccCc
Confidence            35789999999999999999999999999999999988654  366788888999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++.+|++|||.+.               .+|+.+....++.++||||+||++|+|+++..|+...
T Consensus       133 ~NILl~~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~  204 (316)
T d1fota_         133 ENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  204 (316)
T ss_dssp             GGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             hheeEcCCCCEEEecCccceEeccccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCc
Confidence            99999999999999999764               2344455667899999999999999999999888754

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=205.30  Aligned_cols=131  Identities=25%  Similarity=0.369  Sum_probs=111.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++. .+.+++||||+++|+|.+++... ...+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        58 l~~l~HpnIv~~~~~~~-~~~~~lv~Ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp  132 (276)
T d1uwha_          58 LRKTRHVNILLFMGYST-APQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKS  132 (276)
T ss_dssp             HTTCCCTTBCCEEEEEC-SSSCEEEEECCCEEEHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCCEeeeeEEEe-ccEEEEEEecCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCH
Confidence            46789999999999875 45689999999999999998543 3468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc--------------------cccccC---CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL--------------------LGSRIL---PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~---~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      +|||++.++.+|++|||++..                    +||.+.   ...++.++|||||||++|||+|+..|+..
T Consensus       133 ~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~  211 (276)
T d1uwha_         133 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSN  211 (276)
T ss_dssp             GGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             HHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCC
Confidence            999999999999999998642                    122222   23478899999999999999999888764

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.3e-37  Score=207.83  Aligned_cols=132  Identities=29%  Similarity=0.339  Sum_probs=114.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||++++++.+++.+++||||+++|++......+  ..+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        69 l~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp  143 (309)
T d1u5ra_          69 LQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKA  143 (309)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSG
T ss_pred             HHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCc
Confidence            47899999999999999999999999999998887666443  478999999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh-------------c-cccccC---CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR-------------L-LGSRIL---PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~-------------~-~~~~~~---~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++.+|++|||.+.             + +|+.+.   ...++.++|||||||++|||+++..|+...
T Consensus       144 ~NILl~~~~~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~  217 (309)
T d1u5ra_         144 GNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (309)
T ss_dssp             GGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ceEEECCCCCEEEeecccccccCCCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCC
Confidence            99999999999999999765             2 223222   345889999999999999999998887643

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-37  Score=209.91  Aligned_cols=131  Identities=23%  Similarity=0.302  Sum_probs=112.3

Q ss_pred             CC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCC---------------------CCCcHHHHHHHHHHHHH
Q 041845            3 NL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHK---------------------PPLQWMWRLKICIGAAR   60 (143)
Q Consensus         3 ~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~i~~   60 (143)
                      ++ +|||||++++++.+++.+++||||+++|+|.+++.+...                     ..+++..+..++.|++.
T Consensus        96 ~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~  175 (325)
T d1rjba_          96 QLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAK  175 (325)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHH
T ss_pred             HhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHH
Confidence            45 899999999999999999999999999999999965421                     34788899999999999


Q ss_pred             HHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhc--------------------cccccCCCCCCCcccchhh
Q 041845           61 GLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL--------------------LGSRILPAKLTEKSDVYSF  120 (143)
Q Consensus        61 ~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~--------------------~~~~~~~~~~~~~~Di~s~  120 (143)
                      |+.|||+   ++|+||||||+||+++.++.+|++|||+++.                    +|+.+....++.++|||||
T Consensus       176 gl~yLH~---~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~  252 (325)
T d1rjba_         176 GMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSY  252 (325)
T ss_dssp             HHHHHHH---TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHh---CCeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccch
Confidence            9999998   8999999999999999999999999998742                    2233445678999999999


Q ss_pred             hhhhhcccc-ccCCCCc
Q 041845          121 GVLCARPAM-LPMAENE  136 (143)
Q Consensus       121 G~~~~~~~~-~~~~~~~  136 (143)
                      ||++|||++ +..|+..
T Consensus       253 Gvil~emlt~g~~Pf~~  269 (325)
T d1rjba_         253 GILLWEIFSLGVNPYPG  269 (325)
T ss_dssp             HHHHHHHTTTSCCSSTT
T ss_pred             hHHHHHHHhCCCCCCCC
Confidence            999999997 6777654

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-36  Score=208.67  Aligned_cols=131  Identities=18%  Similarity=0.132  Sum_probs=115.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +.++||||+++++++.+++.+|+||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   .+++||||||+
T Consensus        62 ~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~  136 (364)
T d1omwa3          62 STGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPA  136 (364)
T ss_dssp             SSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             hcCCCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHH---CCccceeeccc
Confidence            5678999999999999999999999999999999999654  367889999999999999999998   99999999999


Q ss_pred             cEEEcCCCcccccccchhhc----------------cccccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENWVAKHSRERQLRL----------------LGSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~----------------~~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||++.++.+|++|||++..                +|+.+. ...++.++||||+||++|||+||..|+...
T Consensus       137 NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  209 (364)
T d1omwa3         137 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  209 (364)
T ss_dssp             GEEECSSSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             eeEEcCCCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999998642                233333 346889999999999999999998888643

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-37  Score=206.24  Aligned_cols=132  Identities=23%  Similarity=0.307  Sum_probs=111.4

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++|++.+ +.+++||||+++|+|.+++.. ....+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        63 l~~l~HpnIv~l~g~~~~-~~~~lvmE~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp  137 (285)
T d1u59a_          63 MHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAA  137 (285)
T ss_dssp             HHHCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHhCCCCCEeeEeeeecc-CeEEEEEEeCCCCcHHHHhhc-cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCch
Confidence            356899999999999865 467899999999999998743 34578999999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~~  137 (143)
                      +||+++.++.+|++|||+++..                     |+.+..+.++.++|||||||++|||+| +..|+...
T Consensus       138 ~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~  216 (285)
T d1u59a_         138 RNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM  216 (285)
T ss_dssp             GGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             hheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC
Confidence            9999999999999999987532                     222233567889999999999999987 67777643

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=204.36  Aligned_cols=131  Identities=21%  Similarity=0.182  Sum_probs=114.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|||||+++++|.+++.+++||||+++|+|.+++...  ..+++..+..++.|++.|+.|||+   .+++|||+||+
T Consensus        68 ~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~---~~ivHrDiKp~  142 (293)
T d1jksa_          68 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPE  142 (293)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGG
T ss_pred             HhCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhh---cceeecccccc
Confidence            4689999999999999999999999999999999998654  368899999999999999999998   89999999999


Q ss_pred             cEEEcCCC----cccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           82 NILLDENW----VAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        82 nil~~~~~----~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+++.++    .+|++|||.+..                 +|+.+....++.++||||+||++|||+++..|+...
T Consensus       143 Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  219 (293)
T d1jksa_         143 NIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  219 (293)
T ss_dssp             GEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC
Confidence            99998776    489999997642                 333345567899999999999999999998887643

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.4e-36  Score=208.30  Aligned_cols=133  Identities=21%  Similarity=0.228  Sum_probs=115.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||++++++.+++.+++||||+++|+|.+.+.+. ...+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        77 l~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~-~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHrDiKp  152 (350)
T d1koaa2          77 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKP  152 (350)
T ss_dssp             HHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCT-TSCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCG
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHh---cCCeeeeech
Confidence            35689999999999999999999999999999999998543 3468999999999999999999998   9999999999


Q ss_pred             CcEEEcC--CCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDE--NWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~--~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.  ++.+|++|||++..                 +|+.+....++.++||||+||++|+|++|..|+...
T Consensus       153 ~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  228 (350)
T d1koaa2         153 ENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  228 (350)
T ss_dssp             GGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hHeeeccCCCCeEEEeecchheecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC
Confidence            9999964  57899999998642                 233345567889999999999999999998887643

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=205.32  Aligned_cols=134  Identities=16%  Similarity=0.179  Sum_probs=114.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+++.+|+||||+++++|.+++... ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        55 l~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~-~~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp  130 (321)
T d1tkia_          55 LNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRP  130 (321)
T ss_dssp             HHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCG
T ss_pred             HHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccc
Confidence            35689999999999999999999999999999999999543 3468999999999999999999998   8999999999


Q ss_pred             CcEEEcCC--Ccccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDEN--WVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~--~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +||+++.+  ..++++|||.+..                 +++......++.++||||+||++|+|+++..|+....
T Consensus       131 ~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~  207 (321)
T d1tkia_         131 ENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET  207 (321)
T ss_dssp             GGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             cceeecCCCceEEEEcccchhhccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCC
Confidence            99999854  4788999998642                 2233445567889999999999999999988886543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-37  Score=204.46  Aligned_cols=130  Identities=25%  Similarity=0.291  Sum_probs=111.0

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++|+|.+ +..++||||+++|+|.+++.+.  ..+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        62 l~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp  135 (277)
T d1xbba_          62 MQQLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAA  135 (277)
T ss_dssp             HHTCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSG
T ss_pred             HHhCCCCCCceEEEEecc-CCEEEEEEcCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcc
Confidence            357899999999999865 4578999999999999998654  468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      +||+++.++.+|++|||++..                     +|+.+....++.++|||||||++|||++ +..|+..
T Consensus       136 ~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~  213 (277)
T d1xbba_         136 RNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRG  213 (277)
T ss_dssp             GGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             hhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCC
Confidence            999999999999999998642                     2222334567889999999999999987 6777764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-36  Score=205.68  Aligned_cols=132  Identities=21%  Similarity=0.197  Sum_probs=118.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.+....+++|||+.+|++...+.+..  .+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        95 l~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~---~~iiHRDIKP  169 (350)
T d1rdqe_          95 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKP  169 (350)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHHcCCCcEeecccccccccccccccccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHh---CCEecCcCCH
Confidence            467899999999999999999999999999999999986543  68899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +|||++.++.+|++|||++.               .+|+.+....++.++||||+||++|+|+|+..|+...
T Consensus       170 ~NILl~~~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  241 (350)
T d1rdqe_         170 ENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHcccCCCCCEEeeeceeeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc
Confidence            99999999999999999864               2344456678899999999999999999998888654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-36  Score=203.12  Aligned_cols=130  Identities=22%  Similarity=0.275  Sum_probs=116.1

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      .++||||+++++++.+++.+|+||||+++|+|.+++...  ..+++..+..++.|++.|+.|||+   ++++|||+||+|
T Consensus        59 ~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~~--~~~~e~~~~~~~~qi~~al~ylH~---~~iiHrDikp~N  133 (320)
T d1xjda_          59 AWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDN  133 (320)
T ss_dssp             HTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGG
T ss_pred             hCCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCcccc
Confidence            479999999999999999999999999999999999654  367889999999999999999998   899999999999


Q ss_pred             EEEcCCCcccccccchhh------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           83 ILLDENWVAKHSRERQLR------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        83 il~~~~~~~k~~~~~~~~------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||++..+.+|++|||.+.                  .+|+.+....++.++||||+||++|+|++|..|+...
T Consensus       134 iL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~  206 (320)
T d1xjda_         134 ILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  206 (320)
T ss_dssp             EEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC
Confidence            999999999999999764                  2334455668899999999999999999998888643

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-37  Score=203.87  Aligned_cols=128  Identities=27%  Similarity=0.377  Sum_probs=108.5

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|||||+++|++.+ +..++||||+++|+|.+.+.......+++..+..++.|++.|+.|||+   ++++||||||+
T Consensus        63 ~~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~  138 (272)
T d1qpca_          63 KQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAA  138 (272)
T ss_dssp             HHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhCCCCCEeEEEeeecc-CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchh
Confidence            56899999999998754 567899999999999998855444568899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccc-------------------cccCCCCCCCcccchhhhhhhhccccccCC
Q 041845           82 NILLDENWVAKHSRERQLRLLG-------------------SRILPAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      ||+++.++.+|++|||+++...                   +.+....++.++|||||||++|||+|+..|
T Consensus       139 NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~  209 (272)
T d1qpca_         139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRI  209 (272)
T ss_dssp             GEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCC
T ss_pred             heeeecccceeeccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCC
Confidence            9999999999999999875332                   222334678899999999999999995433

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=204.45  Aligned_cols=131  Identities=21%  Similarity=0.266  Sum_probs=112.9

Q ss_pred             CCCCCcceeeEEeec----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            4 LRHRHLVSLIGHHVE----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         4 l~h~niv~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      .+||||++++++|.+    +..+|+|||||++|+|.+++.++....+++..+..++.|++.|+.|||+   .+++|||||
T Consensus        62 ~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiK  138 (335)
T d2ozaa1          62 SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVK  138 (335)
T ss_dssp             TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCS
T ss_pred             cCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHH---cCCcccccc
Confidence            489999999999865    4568999999999999999976655679999999999999999999998   999999999


Q ss_pred             CCcEEEcC---CCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           80 STNILLDE---NWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        80 ~~nil~~~---~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |+||+++.   .+.+|++|||++..                 +|+.+....++.++||||+||++|+|+|+..|+...
T Consensus       139 p~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~  216 (335)
T d2ozaa1         139 PENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN  216 (335)
T ss_dssp             GGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEET
T ss_pred             ccccccccccccccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCC
Confidence            99999985   45689999998742                 334344556889999999999999999998888643

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=7.9e-36  Score=198.91  Aligned_cols=131  Identities=25%  Similarity=0.239  Sum_probs=113.9

Q ss_pred             CCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            3 NLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         3 ~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      +++ ||||+++++++.+++.+|+||||+++|+|.+++..+  ..+++..+..++.|++.|+.|||+   ++++||||||+
T Consensus        65 ~l~~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~  139 (277)
T d1phka_          65 KVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPE  139 (277)
T ss_dssp             HHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGG
T ss_pred             HhcCCCCeEEEEeecccCcceEEEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccc
Confidence            455 999999999999999999999999999999999654  378999999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhccccc-----------------c------CCCCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           82 NILLDENWVAKHSRERQLRLLGSR-----------------I------LPAKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~~~~-----------------~------~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      ||+++.++.+|++|||.+....+.                 +      ....++.++||||+||++|+|+++..|+....
T Consensus       140 Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~  219 (277)
T d1phka_         140 NILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK  219 (277)
T ss_dssp             GEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             eEEEcCCCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCC
Confidence            999999999999999987543221                 0      12345788999999999999999988887553

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-36  Score=199.10  Aligned_cols=130  Identities=26%  Similarity=0.385  Sum_probs=111.2

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++|||||+++|++.+++..+++|||+.++++.+.+... ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        63 l~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp  138 (283)
T d1mqba_          63 MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAA  138 (283)
T ss_dssp             HHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhcCCCCEeeeeEEEecCCceEEEEEecccCcchhhhhcc-cccccHHHHHHHHHHHHHhhhhccc---cccccCcccc
Confidence            35789999999999999999999999999999998887543 3578899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhc---------------------cccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           81 TNILLDENWVAKHSRERQLRL---------------------LGSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~---------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +|||++.++.+|++|||+++.                     +|+.+..+.++.++|||||||++|||+++..|+
T Consensus       139 ~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~  213 (283)
T d1mqba_         139 RNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP  213 (283)
T ss_dssp             GGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             ceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCc
Confidence            999999999999999998642                     233344567889999999999999999854443

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-36  Score=198.12  Aligned_cols=133  Identities=31%  Similarity=0.416  Sum_probs=111.1

Q ss_pred             CCCCCCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |++++||||++++|++.+ ++.+++||||+++|+|.+++.......+++..+..++.|++.|+.|||+   .+++||||+
T Consensus        54 l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlk  130 (262)
T d1byga_          54 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLA  130 (262)
T ss_dssp             HTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCS
T ss_pred             HHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhcccccc---Cceeccccc
Confidence            468899999999999865 4668999999999999999865444457899999999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhc---------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRL---------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      |+||+++.++.+|++|||.+..               +|+......++.++|||||||++|||++ +..|+..
T Consensus       131 p~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~  203 (262)
T d1byga_         131 ARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR  203 (262)
T ss_dssp             GGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred             hHhheecCCCCEeecccccceecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCC
Confidence            9999999999999999987652               3333445678999999999999999998 5555543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=196.37  Aligned_cols=131  Identities=27%  Similarity=0.398  Sum_probs=113.0

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++||||++++|+|.+++.+++||||+++|++..++... ...+.+..+..++.|++.|+.|||+   .+++||||+|+
T Consensus        54 ~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~  129 (258)
T d1k2pa_          54 MNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAAR  129 (258)
T ss_dssp             HTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGG
T ss_pred             HhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhcc-ccCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccce
Confidence            5789999999999999999999999999999999987443 3467888999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhc-------------------cccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRL-------------------LGSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~-------------------~~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+..                   +|+.+....++.++|||||||++|||+| +..|+..
T Consensus       130 Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~  204 (258)
T d1k2pa_         130 NCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER  204 (258)
T ss_dssp             GEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             eEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCC
Confidence            99999999999999998742                   2222334577889999999999999998 6777654

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=197.18  Aligned_cols=132  Identities=24%  Similarity=0.301  Sum_probs=106.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||++++|++. .+.+++||||+++|++.+++... ...+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        62 l~~l~HpnIv~l~~~~~-~~~~~iv~E~~~~g~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp  136 (273)
T d1mp8a_          62 MRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAA  136 (273)
T ss_dssp             HHTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSG
T ss_pred             HHhCCCCCEeeEEEEEe-cCeEEEEEEeccCCcHHhhhhcc-CCCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccch
Confidence            35789999999999985 56789999999999999987543 4578899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+...                   |+.+....++.++|||||||++|||++ +..|+...
T Consensus       137 ~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~  213 (273)
T d1mp8a_         137 RNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV  213 (273)
T ss_dssp             GGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             hheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCC
Confidence            9999999999999999986532                   222334577889999999999999987 66666543

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-36  Score=199.40  Aligned_cols=129  Identities=29%  Similarity=0.419  Sum_probs=109.7

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|||||+++|++. .+..++||||+++|++...+.......+++..+..++.|++.|+.|||+   ++++||||||+
T Consensus        67 ~~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~  142 (285)
T d1fmka3          67 KKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAA  142 (285)
T ss_dssp             HHCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGG
T ss_pred             HhcccCCEeEEEEEEe-cCCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhh---hheecccccce
Confidence            5689999999999985 4568899999999999998865444578999999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc-------------------ccccCCCCCCCcccchhhhhhhhccccccCCC
Q 041845           82 NILLDENWVAKHSRERQLRLL-------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~-------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ||+++.++.+|++|||+++..                   |+....+.++.++|||||||++|||+++..|+
T Consensus       143 NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~  214 (285)
T d1fmka3         143 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP  214 (285)
T ss_dssp             GEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             EEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCC
Confidence            999999999999999987532                   23334567889999999999999999854433

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-35  Score=197.13  Aligned_cols=130  Identities=22%  Similarity=0.242  Sum_probs=110.1

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|||||++++++.+++.+++||||+.++++.....  ....+++..+..++.|++.|+.|||+   ++++||||||+
T Consensus        55 ~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~--~~~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~  129 (299)
T d1ua2a_          55 QELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPN  129 (299)
T ss_dssp             HHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGG
T ss_pred             HhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhh--cccCCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcc
Confidence            46799999999999999999999999998876665552  34567888999999999999999998   99999999999


Q ss_pred             cEEEcCCCcccccccchhhcc------------------ccccC-CCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++.++.+|++|||.+...                  |+.+. ...++.++||||+||++|||+++..|+..
T Consensus       130 NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~  203 (299)
T d1ua2a_         130 NLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPG  203 (299)
T ss_dssp             GEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             eEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCC
Confidence            999999999999999987432                  22222 23568899999999999999998777654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=193.42  Aligned_cols=133  Identities=19%  Similarity=0.310  Sum_probs=112.5

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++.+++||||+.+ ++.+.+.......+++..+..++.|++.|+.|||+   .+++||||||
T Consensus        55 l~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~---~~IiHrDiKp  130 (298)
T d1gz8a_          55 LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKP  130 (298)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCcEEEeccccccccceeEEEeecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhc---CCEEccccCc
Confidence            4789999999999999999999999999975 55555544555678999999999999999999998   9999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc------------------cccCCC-CCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLLG------------------SRILPA-KLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~------------------~~~~~~-~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++..|++|||.+....                  +..... .++.++|+||+||++|+|+++..|+...
T Consensus       131 eNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~  206 (298)
T d1gz8a_         131 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD  206 (298)
T ss_dssp             GGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCC
Confidence            99999999999999999875332                  112222 3478899999999999999998887643

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.3e-35  Score=194.63  Aligned_cols=132  Identities=23%  Similarity=0.276  Sum_probs=113.1

Q ss_pred             CCCCCCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            1 LSNLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      |+.++||||+++++++...+    .+|+||||+++++|.+.+...  ..+++..+..++.|++.|+.|||+   .+++||
T Consensus        61 l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~---~~iiHr  135 (277)
T d1o6ya_          61 AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQ---NGIIHR  135 (277)
T ss_dssp             HHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTEECC
T ss_pred             HHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHh---CCccCc
Confidence            35789999999999987644    378999999999999988554  368899999999999999999998   999999


Q ss_pred             CCCCCcEEEcCCCcccccccchhh---------------------ccccccCCCCCCCcccchhhhhhhhccccccCCCC
Q 041845           77 DVKSTNILLDENWVAKHSRERQLR---------------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAEN  135 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~---------------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~  135 (143)
                      ||||+||+++.++..++.|||...                     .+|+.+....++.++||||+||++|+|+|+..|+.
T Consensus       136 DiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~  215 (277)
T d1o6ya_         136 DVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT  215 (277)
T ss_dssp             CCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCC
Confidence            999999999999999999887542                     23444556678999999999999999999988886


Q ss_pred             cc
Q 041845          136 EQ  137 (143)
Q Consensus       136 ~~  137 (143)
                      ..
T Consensus       216 ~~  217 (277)
T d1o6ya_         216 GD  217 (277)
T ss_dssp             CS
T ss_pred             Cc
Confidence            54

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=196.22  Aligned_cols=132  Identities=30%  Similarity=0.378  Sum_probs=113.2

Q ss_pred             CCCC-CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--------------CCCCCcHHHHHHHHHHHHHHHhHh
Q 041845            1 LSNL-RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--------------HKPPLQWMWRLKICIGAARGLHYL   65 (143)
Q Consensus         1 L~~l-~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~i~~~l~~l   65 (143)
                      |+++ +||||++++|++.+++.+++||||+++|+|.+++...              ....+++.....++.|++.|+.|+
T Consensus        64 l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~l  143 (309)
T d1fvra_          64 LCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL  143 (309)
T ss_dssp             HTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence            3566 7999999999999999999999999999999998543              235788999999999999999999


Q ss_pred             hcCCCCCeeecCCCCCcEEEcCCCcccccccchhhc-----------------cccccCCCCCCCcccchhhhhhhhccc
Q 041845           66 HTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRL-----------------LGSRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        66 h~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~-----------------~~~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                      |+   .+++|||+||+|||++.++.+|++|||.+..                 +|+.+....++.++|||||||++|||+
T Consensus       144 H~---~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell  220 (309)
T d1fvra_         144 SQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV  220 (309)
T ss_dssp             HH---TTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred             hc---CCccccccccceEEEcCCCceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHH
Confidence            98   8999999999999999999999999997642                 233334556788999999999999999


Q ss_pred             ccc-CCCC
Q 041845          129 MLP-MAEN  135 (143)
Q Consensus       129 ~~~-~~~~  135 (143)
                      ++. .|+.
T Consensus       221 ~~~~~p~~  228 (309)
T d1fvra_         221 SLGGTPYC  228 (309)
T ss_dssp             TTSCCTTT
T ss_pred             hcCCCCCC
Confidence            854 4454

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=196.02  Aligned_cols=130  Identities=25%  Similarity=0.372  Sum_probs=110.2

Q ss_pred             CCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            2 SNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      ++++|||||+++|+|.++ ..++++|++.+++|.+.+... ...+++..+..++.|++.|+.|||+   ++++||||||+
T Consensus        66 ~~l~HpnIv~l~g~~~~~-~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~  140 (317)
T d1xkka_          66 ASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAAR  140 (317)
T ss_dssp             HHCCCTTBCCEEEEEESS-SEEEEEECCTTCBHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGG
T ss_pred             HhCCCCCEeeEEEEEecC-CeeEEEEeccCCccccccccc-ccCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhh
Confidence            568999999999999865 456778888899999888543 4578899999999999999999998   89999999999


Q ss_pred             cEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCc
Q 041845           82 NILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENE  136 (143)
Q Consensus        82 nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~  136 (143)
                      ||+++.++.+|++|||+++..                    |+.+..+.++.++|||||||++|||+| +..|+..
T Consensus       141 NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~  216 (317)
T d1xkka_         141 NVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG  216 (317)
T ss_dssp             GEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             cceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCC
Confidence            999999999999999987532                    222344578899999999999999998 6677654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.4e-34  Score=191.93  Aligned_cols=129  Identities=25%  Similarity=0.367  Sum_probs=111.7

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhhcCCC
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLHTGTR   70 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh~~~~   70 (143)
                      +||||++++++|.+++.+++||||+++|+|.+++....              ...+++.+++.++.|++.|+.|||+   
T Consensus        77 ~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---  153 (299)
T d1fgka_          77 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---  153 (299)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---
Confidence            79999999999999999999999999999999996442              2457899999999999999999998   


Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc-
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM-  129 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-  129 (143)
                      .+++||||||+|||++.++..|++|||.+...                    |+.+..+.++.++|||||||++|||++ 
T Consensus       154 ~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~  233 (299)
T d1fgka_         154 KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTL  233 (299)
T ss_dssp             TTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccC
Confidence            89999999999999999999999999876422                    222345678999999999999999997 


Q ss_pred             ccCCCCc
Q 041845          130 LPMAENE  136 (143)
Q Consensus       130 ~~~~~~~  136 (143)
                      +..|+..
T Consensus       234 g~~p~~~  240 (299)
T d1fgka_         234 GGSPYPG  240 (299)
T ss_dssp             SCCSSTT
T ss_pred             CCCCCCC
Confidence            5666653

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.4e-35  Score=195.02  Aligned_cols=132  Identities=23%  Similarity=0.291  Sum_probs=110.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||++++|++.+ +..++||||++++++.+.+... ...+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        65 l~~l~H~nIv~~~g~~~~-~~~~lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp  139 (273)
T d1u46a_          65 MHSLDHRNLIRLYGVVLT-PPMKMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAA  139 (273)
T ss_dssp             HHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCG
T ss_pred             HHhCCCCCEEEEEEEEee-cchheeeeeecCcchhhhhhcc-cCCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecH
Confidence            356899999999999965 4678999999999999887543 3468899999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc---------------------ccccCCCCCCCcccchhhhhhhhcccc-ccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL---------------------GSRILPAKLTEKSDVYSFGVLCARPAM-LPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~---------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~-~~~~~~~~  137 (143)
                      +||+++.++.+|++|||+++..                     |+......++.++|||||||++|||++ +..|+...
T Consensus       140 ~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~  218 (273)
T d1u46a_         140 RNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL  218 (273)
T ss_dssp             GGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             HHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc
Confidence            9999999999999999986532                     222333456778999999999999997 67777543

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.5e-34  Score=193.71  Aligned_cols=132  Identities=25%  Similarity=0.375  Sum_probs=111.2

Q ss_pred             CCCCCCCCcceeeEEeec-CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCC
Q 041845            1 LSNLRHRHLVSLIGHHVE-NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVK   79 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~   79 (143)
                      |++++||||++++|++.+ ++..++||||+++++|.+++... ....++..+..++.|++.|+.|+|+   .+++|||||
T Consensus        82 l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~-~~~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK  157 (311)
T d1r0pa_          82 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLA  157 (311)
T ss_dssp             HHTCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCS
T ss_pred             HHhCCCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccc-cccchHHHHHHHHHHHHHhhhhhcc---cCcccCCcc
Confidence            357899999999999875 56789999999999999988543 4466788889999999999999998   899999999


Q ss_pred             CCcEEEcCCCcccccccchhhcc----------------------ccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           80 STNILLDENWVAKHSRERQLRLL----------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        80 ~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      |+|||+++++.+|++|||.++..                      |+......++.++||||||+++|||+++..|+..
T Consensus       158 ~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~  236 (311)
T d1r0pa_         158 ARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYP  236 (311)
T ss_dssp             GGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred             HHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCC
Confidence            99999999999999999987532                      1222345678899999999999999996666543

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=5.9e-34  Score=191.89  Aligned_cols=128  Identities=29%  Similarity=0.432  Sum_probs=109.9

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC----------------------CCCCcHHHHHHHHHHH
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH----------------------KPPLQWMWRLKICIGA   58 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~i   58 (143)
                      |++++||||+++++++.++...++++|++++|+|.+++....                      ...+++..+..++.|+
T Consensus        70 l~~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi  149 (301)
T d1lufa_          70 MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQV  149 (301)
T ss_dssp             HHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHH
T ss_pred             HHhcCCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999885321                      2347788899999999


Q ss_pred             HHHHhHhhcCCCCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccch
Q 041845           59 ARGLHYLHTGTRNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVY  118 (143)
Q Consensus        59 ~~~l~~lh~~~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~  118 (143)
                      +.|+.|||+   .+++||||||+|||++.++.+|++|||++...                    |+.+....++.++|||
T Consensus       150 ~~gl~ylH~---~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVw  226 (301)
T d1lufa_         150 AAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVW  226 (301)
T ss_dssp             HHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHH
T ss_pred             HHHhhhccc---CCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhc
Confidence            999999998   89999999999999999999999999987522                    2223345688999999


Q ss_pred             hhhhhhhcccccc
Q 041845          119 SFGVLCARPAMLP  131 (143)
Q Consensus       119 s~G~~~~~~~~~~  131 (143)
                      ||||++|||+++.
T Consensus       227 S~Gvvl~ell~~~  239 (301)
T d1lufa_         227 AYGVVLWEIFSYG  239 (301)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             cchhhHHHHHccC
Confidence            9999999999864

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-33  Score=190.29  Aligned_cols=132  Identities=23%  Similarity=0.286  Sum_probs=107.4

Q ss_pred             CCCCCCCCcceeeEEeecCC----chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcC-----CCC
Q 041845            1 LSNLRHRHLVSLIGHHVENK----EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTG-----TRN   71 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~----~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~-----~~~   71 (143)
                      +++++||||+++++++.+++    .+++||||+++|+|.+++.+.   .+++.....++.|++.|+.|+|+.     ..+
T Consensus        51 ~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~  127 (303)
T d1vjya_          51 TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP  127 (303)
T ss_dssp             STTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC
T ss_pred             HhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence            35789999999999997643    578999999999999999653   688999999999999999999952     125


Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhccc----------------------cccCCC------CCCCcccchhhhhh
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRLLG----------------------SRILPA------KLTEKSDVYSFGVL  123 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~----------------------~~~~~~------~~~~~~Di~s~G~~  123 (143)
                      +++||||||+|||++.++.+|++|||++....                      +.+...      .++.++|||||||+
T Consensus       128 ~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvv  207 (303)
T d1vjya_         128 AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLV  207 (303)
T ss_dssp             EEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHH
T ss_pred             CeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHH
Confidence            89999999999999999999999999764321                      111111      14567999999999


Q ss_pred             hhccccccCCCC
Q 041845          124 CARPAMLPMAEN  135 (143)
Q Consensus       124 ~~~~~~~~~~~~  135 (143)
                      +|||+|+..++.
T Consensus       208 l~el~tg~~~~~  219 (303)
T d1vjya_         208 FWEIARRCSIGG  219 (303)
T ss_dssp             HHHHHHTBCBTT
T ss_pred             HHHHhhCCCCCC
Confidence            999999765543

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=8.9e-33  Score=184.87  Aligned_cols=132  Identities=19%  Similarity=0.256  Sum_probs=112.1

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |++++||||+++++++.+++..++++|++.++.+..+...  ...+++..+..++.|++.|+.|||+   .+|+||||||
T Consensus        54 l~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp  128 (286)
T d1ob3a_          54 LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVC--EGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKP  128 (286)
T ss_dssp             GGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHTS--TTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCG
T ss_pred             HHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHhh--cCCcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCC
Confidence            5678999999999999999999999999987666555532  3578999999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhcc------------------ccccC-CCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           81 TNILLDENWVAKHSRERQLRLL------------------GSRIL-PAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +||+++.++.+|++|||.+...                  |+.+. ...++.++|+||+||++|||++|..|+...
T Consensus       129 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~  204 (286)
T d1ob3a_         129 QNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (286)
T ss_dssp             GGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ceeeEcCCCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCC
Confidence            9999999999999999987432                  11122 234689999999999999999998888643

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-33  Score=187.30  Aligned_cols=128  Identities=27%  Similarity=0.334  Sum_probs=102.0

Q ss_pred             CCCCcceeeEEeecC-CchhhhHhhhcCCCHHHHhhcCC--------------CCCCcHHHHHHHHHHHHHHHhHhhcCC
Q 041845            5 RHRHLVSLIGHHVEN-KEMILVYDCMARGTLRDHLYNNH--------------KPPLQWMWRLKICIGAARGLHYLHTGT   69 (143)
Q Consensus         5 ~h~niv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~l~~lh~~~   69 (143)
                      +|+||+.+++++.++ ..++++|||+++|+|.+++....              ...+++..+..++.|++.|+.|||+  
T Consensus        75 ~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~--  152 (299)
T d1ywna1          75 HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS--  152 (299)
T ss_dssp             CCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh--
Confidence            689999999988654 46899999999999999985432              2357889999999999999999998  


Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                       ++++||||||+|||++.++.+|++|||++...                    |+.+....++.++|||||||++|||++
T Consensus       153 -~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt  231 (299)
T d1ywna1         153 -RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS  231 (299)
T ss_dssp             -TTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             -CCCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHh
Confidence             89999999999999999999999999987421                    222334567899999999999999998


Q ss_pred             cc-CCCC
Q 041845          130 LP-MAEN  135 (143)
Q Consensus       130 ~~-~~~~  135 (143)
                      +. .|+.
T Consensus       232 ~~~~p~~  238 (299)
T d1ywna1         232 LGASPYP  238 (299)
T ss_dssp             TSCCSST
T ss_pred             CCCCCCC
Confidence            53 3443

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.6e-33  Score=186.91  Aligned_cols=124  Identities=24%  Similarity=0.340  Sum_probs=107.4

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCC----------------CCCCcHHHHHHHHHHHHHHHhHhhcC
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNH----------------KPPLQWMWRLKICIGAARGLHYLHTG   68 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~i~~~l~~lh~~   68 (143)
                      +|||||++++++.+++..+++|||+++|+|.+++.+..                ...+++..+..++.|++.|+.|||+ 
T Consensus        85 ~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~-  163 (311)
T d1t46a_          85 NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS-  163 (311)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh-
Confidence            69999999999999999999999999999999986432                2357788999999999999999998 


Q ss_pred             CCCCeeecCCCCCcEEEcCCCcccccccchhhccc--------------------cccCCCCCCCcccchhhhhhhhccc
Q 041845           69 TRNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG--------------------SRILPAKLTEKSDVYSFGVLCARPA  128 (143)
Q Consensus        69 ~~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~--------------------~~~~~~~~~~~~Di~s~G~~~~~~~  128 (143)
                        .+++||||||+||+++.++.++++|||.+....                    +......++.++|||||||++|||+
T Consensus       164 --~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ell  241 (311)
T d1t46a_         164 --KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELF  241 (311)
T ss_dssp             --TTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             --CCeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHH
Confidence              899999999999999999999999999875322                    2233456788999999999999999


Q ss_pred             ccc
Q 041845          129 MLP  131 (143)
Q Consensus       129 ~~~  131 (143)
                      |+.
T Consensus       242 t~g  244 (311)
T d1t46a_         242 SLG  244 (311)
T ss_dssp             TTT
T ss_pred             hCC
Confidence            843

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-33  Score=187.31  Aligned_cols=131  Identities=19%  Similarity=0.234  Sum_probs=109.8

Q ss_pred             CCCCCCcceeeEEeec-----CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecC
Q 041845            3 NLRHRHLVSLIGHHVE-----NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRD   77 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~-----~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~   77 (143)
                      .++||||++++++|..     ...+++++|++.++++.... ......+++..+..++.|++.|+.|||+   ++++|||
T Consensus        66 ~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrD  141 (305)
T d1blxa_          66 TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLD-KVPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRD  141 (305)
T ss_dssp             HTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHH-HSCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCC
T ss_pred             hcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhh-hccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecC
Confidence            3579999999999853     34688999999876554443 3445678899999999999999999998   8999999


Q ss_pred             CCCCcEEEcCCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           78 VKSTNILLDENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        78 l~~~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||+|||++..+..|+.|||.+.                 .+||.+....++.++||||+||++|||+++..|+...
T Consensus       142 iKp~NILi~~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~  218 (305)
T d1blxa_         142 LKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  218 (305)
T ss_dssp             CCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCccEEEEcCCCCeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC
Confidence            99999999999999999998753                 2344466778999999999999999999998887643

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-33  Score=187.54  Aligned_cols=128  Identities=18%  Similarity=0.170  Sum_probs=106.8

Q ss_pred             CCCCcceeeEEeecCCchhhhHhhhcC-CCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCcE
Q 041845            5 RHRHLVSLIGHHVENKEMILVYDCMAR-GTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTNI   83 (143)
Q Consensus         5 ~h~niv~~~~~~~~~~~~~lv~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~ni   83 (143)
                      .||||+++++++.+++..++|||++.+ +++.+.+..+  ..+++..+..++.|++.|+.|||+   ++++||||||+||
T Consensus        67 ~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~~~--~~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NI  141 (273)
T d1xwsa_          67 GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENI  141 (273)
T ss_dssp             SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGE
T ss_pred             CCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccce
Confidence            389999999999999999999999975 5777777543  378899999999999999999998   9999999999999


Q ss_pred             EEcC-CCcccccccchhhccc----------------cccCCCCC-CCcccchhhhhhhhccccccCCCCcc
Q 041845           84 LLDE-NWVAKHSRERQLRLLG----------------SRILPAKL-TEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        84 l~~~-~~~~k~~~~~~~~~~~----------------~~~~~~~~-~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      +++. ++.+|++|||.+....                +.+....+ +.++||||+||++|+|+++..|+...
T Consensus       142 ll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (273)
T d1xwsa_         142 LIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD  213 (273)
T ss_dssp             EEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             EEecCCCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc
Confidence            9985 4789999999875322                21222333 56789999999999999998888654

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-32  Score=186.37  Aligned_cols=132  Identities=22%  Similarity=0.150  Sum_probs=110.5

Q ss_pred             CCCCC-CCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRH-RHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h-~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      ++++| |||+++++++.++...++++||+.+++|.+.+....  .+.+..+..++.|++.|+.|+|+   .+++||||||
T Consensus        83 ~~l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~---~~ivHrDiKp  157 (322)
T d1vzoa_          83 EHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKL  157 (322)
T ss_dssp             HHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCG
T ss_pred             HhccCCCeEEEeeeeeccCCceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhc---CCEEeccCCc
Confidence            45656 899999999999999999999999999999986543  56778889999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccc-------------------cccCC--CCCCCcccchhhhhhhhccccccCCCCccc
Q 041845           81 TNILLDENWVAKHSRERQLRLLG-------------------SRILP--AKLTEKSDVYSFGVLCARPAMLPMAENEQE  138 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~-------------------~~~~~--~~~~~~~Di~s~G~~~~~~~~~~~~~~~~~  138 (143)
                      +||+++.++.++++|||.+....                   +.+..  ..++.++||||+||++|+|+++..|+....
T Consensus       158 ~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~  236 (322)
T d1vzoa_         158 ENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG  236 (322)
T ss_dssp             GGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred             cceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999875321                   11211  245778999999999999999988886543

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-32  Score=184.01  Aligned_cols=132  Identities=24%  Similarity=0.374  Sum_probs=111.3

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcC--------CCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNN--------HKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      |++++||||++++|++..+...++||||+++|+|.+++...        ....+++..+..++.|++.|+.|||+   ++
T Consensus        77 l~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~  153 (308)
T d1p4oa_          77 MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NK  153 (308)
T ss_dssp             GGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             HHHcCCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CC
Confidence            46789999999999999999999999999999999987422        12345788899999999999999998   89


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhcc--------------------ccccCCCCCCCcccchhhhhhhhcccccc-
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRLL--------------------GSRILPAKLTEKSDVYSFGVLCARPAMLP-  131 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~~--------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~-  131 (143)
                      ++||||||+|||++.++.+|++|||+++..                    |+......++.++|+|||||++|||+|+. 
T Consensus       154 ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~  233 (308)
T d1p4oa_         154 FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE  233 (308)
T ss_dssp             CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSC
T ss_pred             eeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCC
Confidence            999999999999999999999999987532                    12233456788999999999999999863 


Q ss_pred             CCCC
Q 041845          132 MAEN  135 (143)
Q Consensus       132 ~~~~  135 (143)
                      .|+.
T Consensus       234 ~p~~  237 (308)
T d1p4oa_         234 QPYQ  237 (308)
T ss_dssp             CTTT
T ss_pred             CCCC
Confidence            4554

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=184.09  Aligned_cols=133  Identities=23%  Similarity=0.233  Sum_probs=105.8

Q ss_pred             CCCCCCCCcceeeEEeecC------CchhhhHhhhcCCCHHHHhh--cCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN------KEMILVYDCMARGTLRDHLY--NNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      |++++||||++++++|...      ..+++||||++++ +.+.+.  ......+++..+..++.|++.|+.|||+   ++
T Consensus        67 l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~-~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~---~~  142 (350)
T d1q5ka_          67 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FG  142 (350)
T ss_dssp             HHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TT
T ss_pred             HHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCc-cHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHh---cC
Confidence            3568999999999998542      3478999999864 433332  1234578999999999999999999998   99


Q ss_pred             eeecCCCCCcEEEcCCC-cccccccchhhc-----------------cccccC-CCCCCCcccchhhhhhhhccccccCC
Q 041845           73 IIHRDVKSTNILLDENW-VAKHSRERQLRL-----------------LGSRIL-PAKLTEKSDVYSFGVLCARPAMLPMA  133 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~-~~k~~~~~~~~~-----------------~~~~~~-~~~~~~~~Di~s~G~~~~~~~~~~~~  133 (143)
                      |+||||||+|||++.++ .+|++|||.+..                 +|+... ...++.++||||+||++|||+++..|
T Consensus       143 IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~p  222 (350)
T d1q5ka_         143 ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPI  222 (350)
T ss_dssp             EECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCS
T ss_pred             CcccCCCcceEEEecCCCceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCC
Confidence            99999999999999764 889999998653                 222233 34678999999999999999998888


Q ss_pred             CCcc
Q 041845          134 ENEQ  137 (143)
Q Consensus       134 ~~~~  137 (143)
                      +...
T Consensus       223 f~~~  226 (350)
T d1q5ka_         223 FPGD  226 (350)
T ss_dssp             SCCS
T ss_pred             CCCC
Confidence            7643

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-31  Score=177.20  Aligned_cols=129  Identities=22%  Similarity=0.279  Sum_probs=110.8

Q ss_pred             CCCCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      |+.++||||+++++++.++...+++++++.++++..++..  ...+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        55 l~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP  129 (292)
T d1unla_          55 LKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC--NGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKP  129 (292)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSG
T ss_pred             HHhcCcCCEEeeccccccccceeEEeeecccccccccccc--ccccchhHHHHHHHHHHHHHHHhhc---CCEeeecccC
Confidence            4678999999999999999999999999998888877744  3467888999999999999999998   8999999999


Q ss_pred             CcEEEcCCCcccccccchhhccccc------------------cCCC-CCCCcccchhhhhhhhccccccCCC
Q 041845           81 TNILLDENWVAKHSRERQLRLLGSR------------------ILPA-KLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        81 ~nil~~~~~~~k~~~~~~~~~~~~~------------------~~~~-~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      +||+++..+.+|++|||.+......                  +... .++.++||||+||++|||+++..|+
T Consensus       130 ~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  202 (292)
T d1unla_         130 QNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred             cccccccCCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCC
Confidence            9999999999999999987532211                  2222 3588999999999999999987765

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-31  Score=180.98  Aligned_cols=131  Identities=19%  Similarity=0.210  Sum_probs=106.5

Q ss_pred             CCCCCCCCcceeeEEeecCCc----hhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeec
Q 041845            1 LSNLRHRHLVSLIGHHVENKE----MILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHR   76 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~~----~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~   76 (143)
                      |++++||||+++++++.....    .+++++++.+++|.+++..+   .+++..+..++.|++.|+.|||+   ++++||
T Consensus        60 l~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~---~~iiHR  133 (345)
T d1pmea_          60 LLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHS---ANVLHR  133 (345)
T ss_dssp             HHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH---TTEECC
T ss_pred             HHHcCCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHH---CCCcCC
Confidence            356899999999999976532    23344556688999999543   68899999999999999999998   999999


Q ss_pred             CCCCCcEEEcCCCcccccccchhhc---------------------ccccc-CCCCCCCcccchhhhhhhhccccccCCC
Q 041845           77 DVKSTNILLDENWVAKHSRERQLRL---------------------LGSRI-LPAKLTEKSDVYSFGVLCARPAMLPMAE  134 (143)
Q Consensus        77 ~l~~~nil~~~~~~~k~~~~~~~~~---------------------~~~~~-~~~~~~~~~Di~s~G~~~~~~~~~~~~~  134 (143)
                      ||||+|||++.++.+|++|||.+..                     +|+.+ ....++.++|+||+||++|+|+++..|+
T Consensus       134 DIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf  213 (345)
T d1pmea_         134 DLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF  213 (345)
T ss_dssp             CCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCC
Confidence            9999999999999999999997642                     12222 2335678899999999999999998887


Q ss_pred             Ccc
Q 041845          135 NEQ  137 (143)
Q Consensus       135 ~~~  137 (143)
                      ...
T Consensus       214 ~~~  216 (345)
T d1pmea_         214 PGK  216 (345)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            644

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-31  Score=181.96  Aligned_cols=130  Identities=23%  Similarity=0.296  Sum_probs=109.0

Q ss_pred             CCCCCCCCcceeeEEeecCC------chhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCee
Q 041845            1 LSNLRHRHLVSLIGHHVENK------EMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTII   74 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~~------~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~   74 (143)
                      |++++|||||+++++|...+      .+++||||+ +.++......   ..+++..++.++.|++.|+.|||+   ++++
T Consensus        71 l~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~---~~Ii  143 (346)
T d1cm8a_          71 LKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHA---AGII  143 (346)
T ss_dssp             HHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTEE
T ss_pred             HHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHh---CCCc
Confidence            35689999999999997654      468999999 4578777743   368999999999999999999998   9999


Q ss_pred             ecCCCCCcEEEcCCCcccccccchhhcc---------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           75 HRDVKSTNILLDENWVAKHSRERQLRLL---------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        75 h~~l~~~nil~~~~~~~k~~~~~~~~~~---------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||||||+|||++.++..|++|||.+...               |+.+.. ..++.++||||+||++|+|+++..|+...
T Consensus       144 HrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~  222 (346)
T d1cm8a_         144 HRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS  222 (346)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCcchhhcccccccccccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCC
Confidence            9999999999999999999999987532               222332 35688999999999999999998887654

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-30  Score=175.42  Aligned_cols=131  Identities=22%  Similarity=0.236  Sum_probs=106.5

Q ss_pred             CCCCCCCCcceeeEEeecC--------CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCC
Q 041845            1 LSNLRHRHLVSLIGHHVEN--------KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNT   72 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~--------~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~   72 (143)
                      |+.++||||+++++++...        +.++++||++.++.+....  .....+++..++.++.|++.|+.|||+   .+
T Consensus        63 l~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~--~~~~~~~~~~~~~i~~qil~~l~~lH~---~~  137 (318)
T d3blha1          63 LQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLS--NVLVKFTLSEIKRVMQMLLNGLYYIHR---NK  137 (318)
T ss_dssp             HHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHT--CTTCCCCHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             HHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCccchhh--hcccccccHHHHHHHHHHHHHHHHhcc---CC
Confidence            3568999999999998653        4578999999876555443  334577888899999999999999998   99


Q ss_pred             eeecCCCCCcEEEcCCCcccccccchhhcc----------------------ccccC-CCCCCCcccchhhhhhhhcccc
Q 041845           73 IIHRDVKSTNILLDENWVAKHSRERQLRLL----------------------GSRIL-PAKLTEKSDVYSFGVLCARPAM  129 (143)
Q Consensus        73 i~h~~l~~~nil~~~~~~~k~~~~~~~~~~----------------------~~~~~-~~~~~~~~Di~s~G~~~~~~~~  129 (143)
                      ++||||||+||+++.++.+|++|||.+...                      |+.+. ...++.++||||+||++|||++
T Consensus       138 ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~  217 (318)
T d3blha1         138 ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWT  217 (318)
T ss_dssp             EECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             EEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhh
Confidence            999999999999999999999999987421                      12122 2357899999999999999999


Q ss_pred             ccCCCCc
Q 041845          130 LPMAENE  136 (143)
Q Consensus       130 ~~~~~~~  136 (143)
                      +..|+..
T Consensus       218 g~~pf~~  224 (318)
T d3blha1         218 RSPIMQG  224 (318)
T ss_dssp             SSCSCCC
T ss_pred             CCCCCCC
Confidence            9888764

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.96  E-value=6.3e-30  Score=173.85  Aligned_cols=128  Identities=16%  Similarity=0.188  Sum_probs=105.5

Q ss_pred             CCC-CCCCcceeeEEeec--CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCC
Q 041845            2 SNL-RHRHLVSLIGHHVE--NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDV   78 (143)
Q Consensus         2 ~~l-~h~niv~~~~~~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l   78 (143)
                      +.+ .||||++++++|..  ...+++||||+++++|....     ..+++..+..++.|++.|+.|||+   ++|+||||
T Consensus        84 ~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~---~gIvHrDi  155 (328)
T d3bqca1          84 ENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHS---MGIMHRDV  155 (328)
T ss_dssp             HHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCC
T ss_pred             HhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhh---cccccccc
Confidence            345 49999999999874  45689999999999987654     368899999999999999999998   99999999


Q ss_pred             CCCcEEEcCCC-cccccccchhhcc-----------------ccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           79 KSTNILLDENW-VAKHSRERQLRLL-----------------GSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        79 ~~~nil~~~~~-~~k~~~~~~~~~~-----------------~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+|||++.++ .++++|||.+...                 |+.... ..++.++|+||+||++|+|+++..|+...
T Consensus       156 Kp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~  233 (328)
T d3bqca1         156 KPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  233 (328)
T ss_dssp             SGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             cccceEEcCCCCeeeecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCC
Confidence            99999998654 6899999987532                 222222 34688999999999999999988777543

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-30  Score=174.99  Aligned_cols=131  Identities=19%  Similarity=0.239  Sum_probs=105.4

Q ss_pred             CCCCCCCCcceeeEEeecC-----CchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            1 LSNLRHRHLVSLIGHHVEN-----KEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         1 L~~l~h~niv~~~~~~~~~-----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      |++++||||+++++++...     ...+++++++.+++|.+++..   ..+++..+..++.|++.|+.|||+   ++++|
T Consensus        71 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~---~giiH  144 (348)
T d2gfsa1          71 LKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHS---ADIIH  144 (348)
T ss_dssp             HHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred             HHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHh---CCCcc
Confidence            3568999999999998643     234666777888999998843   368999999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhhc---------------cccccCC-CCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLRL---------------LGSRILP-AKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~~---------------~~~~~~~-~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      |||||+||+++.++..++.|||.+..               +++.... ..++.++|+||+||++|+|+++..|+...
T Consensus       145 rDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~  222 (348)
T d2gfsa1         145 RDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  222 (348)
T ss_dssp             CCCCGGGEEECTTCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccCCccccccccccccccccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC
Confidence            99999999999999999999987642               2222333 34578999999999999999998887643

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.95  E-value=1.3e-29  Score=170.01  Aligned_cols=129  Identities=13%  Similarity=0.072  Sum_probs=108.7

Q ss_pred             CCC-CCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            3 NLR-HRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         3 ~l~-h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .++ |+|++.+++++.++...++|||++ +++|.+.+... ...++......++.|++.++.|||+   .+++|||+||+
T Consensus        56 ~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~-~~~~~~~~~~~i~~q~~~~l~~lH~---~giiHrDiKp~  130 (293)
T d1csna_          56 LLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPD  130 (293)
T ss_dssp             HTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGG
T ss_pred             HhcCCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHH---CCceeccCCcc
Confidence            454 489999999999999999999999 57999988543 3478899999999999999999998   99999999999


Q ss_pred             cEEEcC-----CCcccccccchhhcc-------------------------ccccCCCCCCCcccchhhhhhhhcccccc
Q 041845           82 NILLDE-----NWVAKHSRERQLRLL-------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLP  131 (143)
Q Consensus        82 nil~~~-----~~~~k~~~~~~~~~~-------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~  131 (143)
                      ||+++.     .+.++++|||.+...                         |+.+....++.++|+||+||++|||+++.
T Consensus       131 Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~  210 (293)
T d1csna_         131 NFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGS  210 (293)
T ss_dssp             GEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCC
Confidence            999974     467899999987532                         22234456788999999999999999998


Q ss_pred             CCCCc
Q 041845          132 MAENE  136 (143)
Q Consensus       132 ~~~~~  136 (143)
                      .|+..
T Consensus       211 ~Pf~~  215 (293)
T d1csna_         211 LPWQG  215 (293)
T ss_dssp             CTTSS
T ss_pred             CcCCC
Confidence            88864

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.1e-30  Score=175.63  Aligned_cols=128  Identities=21%  Similarity=0.256  Sum_probs=107.5

Q ss_pred             CCCCCCCcceeeEEeec------CCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeee
Q 041845            2 SNLRHRHLVSLIGHHVE------NKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIH   75 (143)
Q Consensus         2 ~~l~h~niv~~~~~~~~------~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h   75 (143)
                      ++++||||++++++|..      .+.+|+||||+.+ ++.+.+.    ..+++..+..++.|++.|+.|||+   .+++|
T Consensus        71 ~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~-~l~~~~~----~~~~~~~i~~~~~qil~gl~~LH~---~giiH  142 (355)
T d2b1pa1          71 KCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHS---AGIIH  142 (355)
T ss_dssp             HHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHH---TTCCC
T ss_pred             HhcCCCCeeEEEEEEecccccccCceeEEEEeccch-HHHHhhh----cCCCHHHHHHHHHHHHHHHHHhhh---ccccc
Confidence            56799999999999964      3578999999976 5555552    357889999999999999999998   89999


Q ss_pred             cCCCCCcEEEcCCCcccccccchhh-----------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCcc
Q 041845           76 RDVKSTNILLDENWVAKHSRERQLR-----------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENEQ  137 (143)
Q Consensus        76 ~~l~~~nil~~~~~~~k~~~~~~~~-----------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~~  137 (143)
                      ||+||+||+++.++..+++|||...                 .+|+.+....++.++||||+||++++|+++..|+...
T Consensus       143 rDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~  221 (355)
T d2b1pa1         143 RDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_dssp             SCCCGGGEEECTTCCEEECCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccCCccccccccccceeeechhhhhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC
Confidence            9999999999999999999998643                 2444456678899999999999999999998887643

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.2e-28  Score=164.33  Aligned_cols=131  Identities=15%  Similarity=0.127  Sum_probs=102.9

Q ss_pred             CCCCCCC-cceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCC
Q 041845            2 SNLRHRH-LVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKS   80 (143)
Q Consensus         2 ~~l~h~n-iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~   80 (143)
                      +.++|+| |+.+.+++.+++..++||||+. +++.+.+.. ....+++..+..++.|++.|+.|||+   ++++||||||
T Consensus        57 ~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp  131 (299)
T d1ckia_          57 KMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKP  131 (299)
T ss_dssp             HHSTTSTTCCCEEEEEEETTEEEEEEECCC-CBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCG
T ss_pred             HHccCCCcccEEEEEEecCCEEEEEEEEcC-Cchhhhhhh-ccCCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCH
Confidence            4566665 4555666677888999999995 577776643 34578899999999999999999998   9999999999


Q ss_pred             CcEEEcC---CCcccccccchhhcc-------------------------ccccCCCCCCCcccchhhhhhhhccccccC
Q 041845           81 TNILLDE---NWVAKHSRERQLRLL-------------------------GSRILPAKLTEKSDVYSFGVLCARPAMLPM  132 (143)
Q Consensus        81 ~nil~~~---~~~~k~~~~~~~~~~-------------------------~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~  132 (143)
                      +||+++.   +..++++|||.+...                         |+......++.++|||||||++|||+++..
T Consensus       132 ~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~  211 (299)
T d1ckia_         132 DNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL  211 (299)
T ss_dssp             GGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCC
Confidence            9999864   456899999987532                         222334467889999999999999999988


Q ss_pred             CCCcc
Q 041845          133 AENEQ  137 (143)
Q Consensus       133 ~~~~~  137 (143)
                      |+...
T Consensus       212 P~~~~  216 (299)
T d1ckia_         212 PWQGL  216 (299)
T ss_dssp             TTCCC
T ss_pred             ccccc
Confidence            88643

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.2e-23  Score=142.86  Aligned_cols=130  Identities=19%  Similarity=0.195  Sum_probs=98.0

Q ss_pred             CCCCcceeeEEeecC--CchhhhHhhhcCC-CHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCC
Q 041845            5 RHRHLVSLIGHHVEN--KEMILVYDCMARG-TLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKST   81 (143)
Q Consensus         5 ~h~niv~~~~~~~~~--~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~   81 (143)
                      .|+||+++++++...  ...+++++++..+ +............+.+..++.++.|++.|+.|||+  ..+|+||||||+
T Consensus        78 ~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~  155 (362)
T d1q8ya_          78 GANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPE  155 (362)
T ss_dssp             HHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGG
T ss_pred             CcCceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChh
Confidence            578999999988643  4455555554333 33344444455677889999999999999999996  478999999999


Q ss_pred             cEEEcCCCc------ccccccchhh---------------ccccccCCCCCCCcccchhhhhhhhccccccCCCCc
Q 041845           82 NILLDENWV------AKHSRERQLR---------------LLGSRILPAKLTEKSDVYSFGVLCARPAMLPMAENE  136 (143)
Q Consensus        82 nil~~~~~~------~k~~~~~~~~---------------~~~~~~~~~~~~~~~Di~s~G~~~~~~~~~~~~~~~  136 (143)
                      ||+++..+.      +++.|||.+.               .+|+......++.++|+||+||++++|+++..|+..
T Consensus       156 NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~  231 (362)
T d1q8ya_         156 NVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP  231 (362)
T ss_dssp             GEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             HeeeeccCcccccceeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCC
Confidence            999986543      7888988764               233434556788999999999999999998877653

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.61  E-value=1.8e-17  Score=104.12  Aligned_cols=102  Identities=12%  Similarity=0.046  Sum_probs=74.7

Q ss_pred             CCCCCCcceeeEEeecCCchhhhHhhhcCCCHHHHhhcCCCCCCcHHHHHHHHHHHHHHHhHhhcCCCCCeeecCCCCCc
Q 041845            3 NLRHRHLVSLIGHHVENKEMILVYDCMARGTLRDHLYNNHKPPLQWMWRLKICIGAARGLHYLHTGTRNTIIHRDVKSTN   82 (143)
Q Consensus         3 ~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~~l~~~n   82 (143)
                      ++.|.+++..+++.    ..+++||++++..+.+         ++......++.|++.++.+||+   .+++|||+||+|
T Consensus        70 ~l~~~~v~~~~~~~----~~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~N  133 (191)
T d1zara2          70 KLQGLAVPKVYAWE----GNAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYN  133 (191)
T ss_dssp             HTTTSSSCCEEEEE----TTEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTS
T ss_pred             HccCCCcceEEEec----CCEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhh
Confidence            45678888777643    2378999998754432         2233456788999999999998   899999999999


Q ss_pred             EEEcCCCcccccccchhhccccc---------------cCCCCCCCcccchhhh
Q 041845           83 ILLDENWVAKHSRERQLRLLGSR---------------ILPAKLTEKSDVYSFG  121 (143)
Q Consensus        83 il~~~~~~~k~~~~~~~~~~~~~---------------~~~~~~~~~~Di~s~G  121 (143)
                      |++++++ +++.|||.+......               .....|+.++|+||..
T Consensus       134 ILv~~~~-~~liDFG~a~~~~~~~~~~~l~rd~~~~~~~f~r~y~~~~d~~s~~  186 (191)
T d1zara2         134 VLVSEEG-IWIIDFPQSVEVGEEGWREILERDVRNIITYFSRTYRTEKDINSAI  186 (191)
T ss_dssp             EEEETTE-EEECCCTTCEETTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred             eeeeCCC-EEEEECCCcccCCCCCcHHHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence            9999655 778899976433211               1124567889999975

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.88  E-value=0.00052  Score=43.41  Aligned_cols=31  Identities=16%  Similarity=0.171  Sum_probs=25.2

Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhcc
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~  102 (143)
                      .++|+|+.+.|++++.++...+.||+.+.+.
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g  214 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSGRA  214 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhcccC
Confidence            3789999999999998766778898766543

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.27  E-value=0.0059  Score=39.58  Aligned_cols=30  Identities=13%  Similarity=0.054  Sum_probs=26.3

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhh
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLR  100 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~  100 (143)
                      .+++|+|+.+.|++++.+...-+.||+.+.
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccCCcchhhhhcccccceeEecccccc
Confidence            689999999999999988777889998664

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=92.72  E-value=0.02  Score=35.62  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=25.2

Q ss_pred             CeeecCCCCCcEEEcCCCcccccccchhhcc
Q 041845           72 TIIHRDVKSTNILLDENWVAKHSRERQLRLL  102 (143)
Q Consensus        72 ~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~  102 (143)
                      .++|+|+.+.|++++.+....+.|++.+...
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~~g  206 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLGVA  206 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcccC
Confidence            3799999999999998766778898765443

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=91.65  E-value=0.039  Score=36.94  Aligned_cols=32  Identities=22%  Similarity=0.169  Sum_probs=25.4

Q ss_pred             CCeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           71 NTIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        71 ~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                      ..++|+|+.+.||+++.+. +++.|+..+.+.+
T Consensus       223 ~~LiHGDl~~gNIlv~~~~-~~vID~E~a~~G~  254 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEHE-TKVIDPEFAFYGP  254 (392)
T ss_dssp             CEEECSCCCGGGEEECSSC-EEECCCTTCEEEC
T ss_pred             cceeccCCcCCceeEcCCc-eEEechhhcccCC
Confidence            4689999999999998654 7888987665444

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=88.21  E-value=0.081  Score=34.29  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=24.1

Q ss_pred             CCCeeecCCCCCcEEEcCCCcccccccchhhccc
Q 041845           70 RNTIIHRDVKSTNILLDENWVAKHSRERQLRLLG  103 (143)
Q Consensus        70 ~~~i~h~~l~~~nil~~~~~~~k~~~~~~~~~~~  103 (143)
                      ..+++|+|+.+.|++++.+  ..+.||+.+...+
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~g~  222 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARNGP  222 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCEEC
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhcccCc
Confidence            3578999999999999744  3468998765433