Citrus Sinensis ID: 041890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGWVGLGAGQHHSSSTTTNHTKCQ
Secondary Structure (PSIPRED)
cccEEEEEEEEEccEEEEEEEEcccccEEEEEEEEccccEEEEEEEccccccccccccccccHHHHHHHHHcHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEHHHHccHHHHHcccEEEEEcccccccccccEEEEEEEEEcccccEEEccccccEEEEEccccHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHcccccHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHEEEHHHHHHHHHHccccEEEEEccEEcccccEEEEEEEEEcccccEEEEEEccEEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MRDGIKLYVMENTstfincecsdlMCDWKVSAAKVRKSNVFVLkeitpnhtckrrnykfplrtkwNAEKFLHLWvqnpnidfHILRYEIetcsgfkyptwklEAIDKTAKLWLRtdhnygyeRLFQYKNEMLKVNSNNIVIIqtktfddpdvavFDKMFILFADYSHAFKTTCRRLVIVdgweidspyKSVMLVAVFRdannvvlpiVFCEGicimcdgdnrvdeavskslpyaqyRQCCFSLYNKLkeqfplapvYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALycmpewakgtdiTISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGwvglgagqhhssstttnhtkcq
Flexible Loop (DISEMBL)
MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKvrksnvfvlkeitpnhtckrrnykfpLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGWVGLGagqhhssstttnhtkcq
Low Complexity Region (SEG)
MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGWVGLGAGQhhssstttnhtKCQ
Disordered region (IsUnstruct)
****IKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGWVGLGA****************
Disordered Region (DISOPRED)
*RDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGW*********************
Disordered Region (DISEMBL)
MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGWVGLGA****************
Disordered Region (DISPRO)
MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGWVG*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGWVGLGAGQHHSSSTTTNHTKCQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
147821706	632	hypothetical protein VITISV_007696 [Viti	0.549	0.325	0.269	4e-15
2880040	754	putative Mutator-like transposase [Arabi	0.925	0.460	0.187	6e-14
356576716	750	PREDICTED: uncharacterized protein LOC10	0.885	0.442	0.190	1e-13
6175165	757	Mutator-like transposase [Arabidopsis th	0.885	0.438	0.198	2e-13
53370698	1030	transposon protein, putative, mutator su	0.802	0.292	0.206	2e-13
297601393	1015	Os03g0648200 [Oryza sativa Japonica Grou	0.802	0.296	0.206	2e-13
108710101	983	transposon protein, putative, Mutator su	0.802	0.306	0.206	3e-13
10176803	825	mutator-like transposase-like [Arabidops	0.842	0.383	0.2	3e-13
90265237	1030	H0322F07.9 [Oryza sativa Indica Group] g	0.802	0.292	0.209	4e-13
77556042	895	transposon protein, putative, Mutator su	0.837	0.350	0.207	4e-13

>gi|147821706|emb|CAN65999.1| hypothetical protein VITISV_007696 [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 24/230 (10%)

Query: 121 YERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVD 180
           YERL+ Y   + K N  + V IQT         VF++M+I        F   CR L+ +D
Sbjct: 271 YERLWDYAAAIRKWNVGSTVKIQTTN------DVFERMYICLDACKRGFLAGCRPLIGID 324

Query: 181 GWEIDSPYKSVMLVAVFRDANNVVLPIVFC----EG-------ICIMCDGDNRVDE---- 225
           G  +       +LVAV  D N+ + PI F     E        +  + D    VDE    
Sbjct: 325 GCHLKGTTGGQLLVAVGNDGNDNIFPIAFAIVEIENKSSWTWFLQCLLDDIGHVDENGWG 384

Query: 226 ---AVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQ 282
                   +P A++R C   L+   K+ FP   +    W+A ++T K +F  HM  L+  
Sbjct: 385 LVETFKDLMPNAEHRFCVRHLHXNFKKDFPXKVLKDAMWSAARATTKNSFDFHMDELKKL 444

Query: 283 NRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNV 332
           +   Y WL+  +   W+ +     +K   +  + AE   +W+L+  D  V
Sbjct: 445 DVKAYEWLVKLDVRTWSRHAFNPRSKSDTLVNNIAESFNAWILEAXDKPV 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2880040|gb|AAC02734.1| putative Mutator-like transposase [Arabidopsis thaliana] gi|20198324|gb|AAM15523.1| putative Mutator-like transposase [Arabidopsis thaliana]

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/385 (18%), Positives = 142/385 (36%), Gaps = 38/385 (9%)

Query: 6   KLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNY--KFPLRT 63
           ++  +++  T    +C+   C W++  AK+     F ++ I  +HTC   ++        
Sbjct: 206 EMQTVKSDKTRFTAKCNSEGCPWRIHCAKLPGLPTFTIRTIHGSHTCGGISHLGHHQASV 265

Query: 64  KWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYER 123
           +W A+        NP+     +  +I    G      +     +     +R  +   Y  
Sbjct: 266 QWVADAVTERLKVNPHCKPKEILEQIHQVHGITLTYKQAWRGKERIMAAVRGSYEEDYRL 325

Query: 124 LFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWE 183
           L +Y +++ + N  ++ ++     D      F + FI F      F   CR L+ +D   
Sbjct: 326 LPRYCDQIRRTNPGSVAVVHGSPVD----GSFQQFFISFQASICGFLNACRPLIGLDRTV 381

Query: 184 IDSPYKSVMLVAVFRDANNVVLPIVFC----------------------------EGICI 215
           + S Y   +L+A   D    V P+ F                               + I
Sbjct: 382 LKSKYVGTLLLATGFDGEGAVFPLAFAIISEENDSSWQWFLSELRQLLEVNSENMPKLTI 441

Query: 216 MCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQH 275
           +   D  + + V  + P A +  C   L   ++ QF  + +  L W A K      F+  
Sbjct: 442 LSSRDQSIVDGVDTNFPTAFHGLCVHCLTESVRTQFNNSILVNLVWEAAKCLTDFEFEGK 501

Query: 276 MMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANR 335
           M  +   + +   W+ N ++  WA YC  E  +   +T + +E L SW+     + +   
Sbjct: 502 MGEIAQISPEAASWIRNIQHSQWATYCF-EGTRFGHLTANVSESLNSWVQDASGLPIIQM 560

Query: 336 FTTITRETAKNFEKK---VLGWVGL 357
             +I R+    F ++    + W G+
Sbjct: 561 LESIRRQLMTLFNERRETSMQWSGM 585

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576716|ref|XP_003556476.1| PREDICTED: uncharacterized protein LOC100811471 isoform 1 [Glycine max] gi|356576718|ref|XP_003556477.1| PREDICTED: uncharacterized protein LOC100811471 isoform 2 [Glycine max]

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/367 (19%), Positives = 139/367 (37%), Gaps = 35/367 (9%)

Query: 6   KLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNY--KFPLRT 63
           ++  +++  T    +C+   C W++ AAK+     F ++ I  NHTC   ++        
Sbjct: 202 EMQTIKSDKTRFTAKCASEGCPWRIHAAKLPGVPTFTIRTIHENHTCGGISHLGHQQASV 261

Query: 64  KWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYER 123
           +W A        +NPN     +  EI    G      +     +     +R     GY  
Sbjct: 262 QWVANSVEQRLKENPNCKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRL 321

Query: 124 LFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWE 183
           L QY  ++ + N  +I  +    + +P    F ++FI F    + F   CR L+ +D   
Sbjct: 322 LPQYCEQVKRTNPGSIASV----YGNPADGCFQRLFISFQASIYGFLNPCRPLLGLDRTY 377

Query: 184 IDSPYKSVMLVAVFRDANNVVLPIVFC----------------------------EGICI 215
           + S Y   +L+A   D +  + P+ F                               + I
Sbjct: 378 LKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEIHTENMPRLTI 437

Query: 216 MCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQH 275
           + D    + + V  + P A +  C   L +  +++F    +  L W A  +   + F+  
Sbjct: 438 LSDRQKGIVDGVEANFPTAFHGFCMRHLSDSFRKEFNNTMLVNLLWEAANALTVIEFEAK 497

Query: 276 MMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANR 335
           ++ +++ ++D   W+       WA     E  +   +T +  E L +W+L+   + +   
Sbjct: 498 ILEIEEISQDAAYWIRRIPPRLWATAYF-EGHRFGHLTANIVESLNTWILEASGLPIIQM 556

Query: 336 FTTITRE 342
              I R+
Sbjct: 557 MECIRRQ 563

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6175165|gb|AAF04891.1|AC011437_6 Mutator-like transposase [Arabidopsis thaliana] gi|18389286|gb|AAL67086.1| putative Mutator transposase [Arabidopsis thaliana] gi|20465953|gb|AAM20162.1| putative mutator transposase [Arabidopsis thaliana]

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 139/367 (37%), Gaps = 35/367 (9%)

Query: 6   KLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNY--KFPLRT 63
           ++  +++  T    +CS   C W+V AAK+     F ++ I  +H+C   N+        
Sbjct: 208 EMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVPTFTIRTIHESHSCGGINHLGHQQASV 267

Query: 64  KWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYER 123
           +W A        +NPN     +  EI    G      +     +     +R     GY  
Sbjct: 268 QWVASSVEQRLRENPNCKPKEILEEIHRVHGITLSYKQAWRGKERIMATMRGSFEEGYRL 327

Query: 124 LFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWE 183
           L QY  ++ + N  +I  +    +  P    F ++FI F    + F   CR L+ +D   
Sbjct: 328 LPQYCEQVKRTNPGSIASV----YGSPADNCFQRLFISFQASIYGFLNACRPLLGLDRTY 383

Query: 184 IDSPYKSVMLVAVFRDANNVVLPIVF---------------CE-------------GICI 215
           + S Y   +L+A   D +  + P+ F               CE              + I
Sbjct: 384 LKSKYLGTLLLATGFDGDGALFPLAFGIVDEENDENWMWFLCELHNLLETNTENMPRLTI 443

Query: 216 MCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQH 275
           + D    + E V ++ P A +  C   L    +++F    +    W A ++   + F+  
Sbjct: 444 LSDRQKGIVEGVEQNFPTAFHGFCMRHLSESFRKEFNNTLLVNYLWEAAQALTVIEFEAK 503

Query: 276 MMLLQDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANR 335
           ++ +++ ++D   W+       WA     E  +   +T +  E L SW+ +   + +   
Sbjct: 504 ILEIEEISQDAAYWIRRIPPRLWATAYF-EGQRFGHLTANIVESLNSWIAEASGLPIIQM 562

Query: 336 FTTITRE 342
              I R+
Sbjct: 563 MECIRRQ 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53370698|gb|AAU89193.1| transposon protein, putative, mutator sub-class [Oryza sativa Japonica Group]

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 134/334 (40%), Gaps = 33/334 (9%)

Query: 1   MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFP 60
           +R+ +++ +  N    I   C++  C W + A++  ++  FV+K     HTC++      
Sbjct: 343 VRNRVEIKMPRNDRRRIRAHCAE-GCPWNLYASEDSRAKAFVVKTCDERHTCQKEWILKR 401

Query: 61  LRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYG 120
             +KW A K++  +  +  +        ++          KL    + A   +  D    
Sbjct: 402 CTSKWLAGKYIEAFRADEKMSLTSFAKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQ 461

Query: 121 YERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVD 180
           Y+ L+ Y  E+ + N  +   ++       D ++F + ++        F   CR L+ +D
Sbjct: 462 YKLLWDYGKELRRSNPGSSFFLKL------DGSLFSQCYMSMDACKRGFLNGCRPLICLD 515

Query: 181 GWEIDSPYKSVMLVAVFRDANNVVLPIVFCE--------------------GI------C 214
           G  I + Y   +L AV  D N+ + PI F                      GI       
Sbjct: 516 GCHIKTKYGGQLLTAVGMDPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWT 575

Query: 215 IMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQ 274
           IM D    +  AV +  P +++R C   LY+  + QF    +    WA  +S++   + +
Sbjct: 576 IMTDKQKGLIPAVQQVFPESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNK 635

Query: 275 HMMLLQDQNRDCYGWLINREYHCWALYCMPEWAK 308
           +M ++++ N+  Y WL     + W      E+ K
Sbjct: 636 NMDVMRNLNKSAYEWLEKLPPNTWVRAFFSEFPK 669

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297601393|ref|NP_001050777.2| Os03g0648200 [Oryza sativa Japonica Group] gi|255674744|dbj|BAF12691.2| Os03g0648200 [Oryza sativa Japonica Group]

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 134/334 (40%), Gaps = 33/334 (9%)

Query: 1   MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFP 60
           +R+ +++ +  N    I   C++  C W + A++  ++  FV+K     HTC++      
Sbjct: 328 VRNRVEIKMPRNDRRRIRAHCAE-GCPWNLYASEDSRAKAFVVKTCDERHTCQKEWILKR 386

Query: 61  LRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYG 120
             +KW A K++  +  +  +        ++          KL    + A   +  D    
Sbjct: 387 CTSKWLAGKYIEAFRADEKMSLTSFAKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQ 446

Query: 121 YERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVD 180
           Y+ L+ Y  E+ + N  +   ++       D ++F + ++        F   CR L+ +D
Sbjct: 447 YKLLWDYGKELRRSNPGSSFFLKL------DGSLFSQCYMSMDACKRGFLNGCRPLICLD 500

Query: 181 GWEIDSPYKSVMLVAVFRDANNVVLPIVFCE--------------------GI------C 214
           G  I + Y   +L AV  D N+ + PI F                      GI       
Sbjct: 501 GCHIKTKYGGQLLTAVGMDPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWT 560

Query: 215 IMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQ 274
           IM D    +  AV +  P +++R C   LY+  + QF    +    WA  +S++   + +
Sbjct: 561 IMTDKQKGLIPAVQQVFPESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNK 620

Query: 275 HMMLLQDQNRDCYGWLINREYHCWALYCMPEWAK 308
           +M ++++ N+  Y WL     + W      E+ K
Sbjct: 621 NMDVMRNLNKSAYEWLEKLPPNTWVRAFFSEFPK 654

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108710101|gb|ABF97896.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 134/334 (40%), Gaps = 33/334 (9%)

Query: 1   MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFP 60
           +R+ +++ +  N    I   C++  C W + A++  ++  FV+K     HTC++      
Sbjct: 309 VRNRVEIKMPRNDRRRIRAHCAE-GCPWNLYASEDSRAKAFVVKTCDERHTCQKEWILKR 367

Query: 61  LRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYG 120
             +KW A K++  +  +  +        ++          KL    + A   +  D    
Sbjct: 368 CTSKWLAGKYIEAFRADEKMSLTSFAKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQ 427

Query: 121 YERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVD 180
           Y+ L+ Y  E+ + N  +   ++       D ++F + ++        F   CR L+ +D
Sbjct: 428 YKLLWDYGKELRRSNPGSSFFLKL------DGSLFSQCYMSMDACKRGFLNGCRPLICLD 481

Query: 181 GWEIDSPYKSVMLVAVFRDANNVVLPIVFCE--------------------GI------C 214
           G  I + Y   +L AV  D N+ + PI F                      GI       
Sbjct: 482 GCHIKTKYGGQLLTAVGMDPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWT 541

Query: 215 IMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQ 274
           IM D    +  AV +  P +++R C   LY+  + QF    +    WA  +S++   + +
Sbjct: 542 IMTDKQKGLIPAVQQVFPESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNK 601

Query: 275 HMMLLQDQNRDCYGWLINREYHCWALYCMPEWAK 308
           +M ++++ N+  Y WL     + W      E+ K
Sbjct: 602 NMDVMRNLNKSAYEWLEKLPPNTWVRAFFSEFPK 635

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10176803|dbj|BAB09991.1| mutator-like transposase-like [Arabidopsis thaliana]

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 142/345 (41%), Gaps = 29/345 (8%)

Query: 26  CDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHIL 85
           C +++  A   K  V+++K     H C +  +   L+++   + FL+   Q+P      +
Sbjct: 246 CKFRIYCAYDEKIGVYMVKTFIDEHACTKDGFCKVLKSRIIVDMFLNDIRQDPTFKVKAM 305

Query: 86  RYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTK 145
           +  IE        + +       A   ++ +++  + R+  YK ++L+ N  + V ++T 
Sbjct: 306 QKAIEERYSLIASSDQCRKARGKALKMIQDEYDEQFARIHDYKEQLLETNLGSTVEVETI 365

Query: 146 TFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVL 205
           T D   +  FDK ++ F      +   CR ++ +DG  + +  K  +L AV RDANN   
Sbjct: 366 TIDG--IVKFDKFYVCFDALRKTWLAYCRPIIGIDGCFLKNNMKGQLLAAVGRDANNQFY 423

Query: 206 PIVFC--------------------------EGICIMCDGDNRVDEAVSKSLPYAQYRQC 239
           P+ +                           +G  ++ D    +   V + LP  ++R C
Sbjct: 424 PVAWAVVETENIDSWLWFIRKLKSDLKLQDGDGFTLISDRQKGLLNTVDQELPKVEHRMC 483

Query: 240 CFSLYNKLKEQFPLAPVYL-LFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCW 298
              +Y  L+  +P   +   LF A  KS N   + + +  L+  ++  Y  ++ R     
Sbjct: 484 ARHIYGNLRRVYPGKDLSKNLFCAVAKSFNDYEYNRAIDELKQFDQGVYDAVMMRNPRNC 543

Query: 299 ALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRET 343
           +       +   D++ + +E   + + K  +M +     TI R+T
Sbjct: 544 SRAFFGCKSSCEDVSNNFSESYNNAINKAREMPLVEMLETIRRQT 588

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265237|emb|CAH67772.1| H0322F07.9 [Oryza sativa Indica Group] gi|90399190|emb|CAH68177.1| H0403D02.5 [Oryza sativa Indica Group]

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 33/334 (9%)

Query: 1   MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFP 60
           +R+ +++ +  N    I   C++  C W + A++  ++  FV+K     HTC++      
Sbjct: 343 VRNRVEIKMPRNDRRRIRAHCAE-GCPWNLYASEDSRAKAFVVKTYDERHTCQKEWILKR 401

Query: 61  LRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYG 120
             +KW A K++  +  +  +        ++          KL    + A   +  D    
Sbjct: 402 CTSKWLAGKYIEAFRADEKMSLTSFAKTVQLQWNLTPSRSKLARARRIAMKTMHGDEVEQ 461

Query: 121 YERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVD 180
           Y+ L+ Y  E+ + N        T  F   D ++F + ++        F   CR L+ +D
Sbjct: 462 YKLLWDYGKELRRSNPG------TSFFLKLDGSLFSQCYMSMDACKRGFLNGCRPLICLD 515

Query: 181 GWEIDSPYKSVMLVAVFRDANNVVLPIVFCE--------------------GI------C 214
           G  I + Y   +L AV  D N+ + PI F                      GI       
Sbjct: 516 GCHIKTKYGGQLLTAVGMDPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWT 575

Query: 215 IMCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQ 274
           IM D    +  AV +  P +++R C   LY+  + QF    +    WA  +S++   + +
Sbjct: 576 IMTDKQKGLIPAVQQVFPESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNK 635

Query: 275 HMMLLQDQNRDCYGWLINREYHCWALYCMPEWAK 308
           +M ++++ N+  Y W+     + W      E+ K
Sbjct: 636 NMDVMRNLNKSAYEWIEKLPPNTWVRAFFSEFPK 669

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77556042|gb|ABA98838.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group] gi|108708684|gb|ABF96479.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 136/352 (38%), Gaps = 38/352 (10%)

Query: 19  CECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRT--KWNAEKFLHLWVQ 76
           C+  +  C W+  A+  +K     +K   P H C   N          W AE+ +    +
Sbjct: 330 CKKKEQGCKWRFHASTSKKYYGCKVKVNRPAHNCCSINKTGAAMATNSWVAERVIDWLKE 389

Query: 77  NPNIDFHILRYEIETCSGF-----KYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEM 131
            P +    L+ ++E    F     K    K +A++K    W  +     +  L  ++ E+
Sbjct: 390 TPTLGASALKVKLEKKYKFTIGYDKVFRGKEKALEKIFGKWEDS-----FALLPTFREEL 444

Query: 132 LKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSPYKSV 191
           LK    +IV I T+  +D     F ++FI        F   CR  + +D   +   ++  
Sbjct: 445 LKAQPGSIVDIDTEIHED--QVCFRRLFIALKPCIDGFLQGCRPYIAMDSTHLTGKHRGQ 502

Query: 192 MLVAVFRDANNVVLPIVFC------------------------EGICIMCDGDNRVDEAV 227
           +  AV  D NN + P+ F                          G+ I  D    ++ AV
Sbjct: 503 LAAAVAIDGNNWLFPVAFGVIEAETTESWTWFVQNLKNAIGNPPGLAISTDAGKGLERAV 562

Query: 228 SKSLPYAQYRQCCFSLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCY 287
           S   P A++R+C   L+   K+Q+         W A K      +  HM  + +++ +  
Sbjct: 563 SDVYPTAEHRECMRHLWKNFKKQYHGPLFGENMWPAAKCYTSQQYNYHMNKIAEKSPEAI 622

Query: 288 GWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTI 339
            +L       W+     E +K   I  + +E   +W++K  ++++ + F T+
Sbjct: 623 AYLKTNHPFFWSRSKFSELSKVDYINNNLSESFNNWVMKIKELHIVDLFDTL 674

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.517	0.269	0.229	7.9e-08
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.488	0.233	0.232	1.5e-06
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.522	0.261	0.224	0.00027

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
 Identities = 47/205 (22%), Positives = 93/205 (45%)

Query:     9 VMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAE 68
             V E        EC    C W + AA++ +  +  + + T  HTC    Y     +++ A+
Sbjct:   214 VRETEKEMYTFECVRWKCKWSLRAARMEEHGLVEITKYTGPHTCSHE-YPNDFESEFAAD 272

Query:    69 KFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYE-RLFQY 127
             +   +    P +    L+   +  +G++  T K+   D   ++  R    +G E + F+ 
Sbjct:   273 EIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMR--DGKLEVIKRV---FGDEDQSFRV 327

Query:   128 KNEMLKV-NSNNIVII--QTKTFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEI 184
               +++   +S+N +++  Q   F +PD A F  +F  F+     F+  CR L++VD   +
Sbjct:   328 MPKLISAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGFQH-CRPLIVVDTKSL 386

Query:   185 DSPYKSVMLVAVFRDANNVVLPIVF 209
             +  Y+  +++A   DA N   P+ F
Sbjct:   387 NGKYQLKLMIASGVDAANKFFPLAF 411

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 47/202 (23%), Positives = 83/202 (41%)

Query:    20 ECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYK-FPLRT-KWNAEKFLHLW--V 75
             EC    C W + A++  +  +F + E +  H C   +   F      +  E+ + +   +
Sbjct:   220 ECERWHCKWSICASRREEDGLFEITECSGPHDCYPEHLNDFDAECIPFQIERVVRVQPTL 279

Query:    76 QNPNID------FHI-LRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYERLFQYK 128
                 +D      F   L   +E CS       K++AI +    W   D ++   RL    
Sbjct:   280 STAELDKWWEKKFGFALDQVVEHCSEGLVEDAKVKAIKRFFGDW---DQSF---RLIPKL 333

Query:   129 NEMLKVNSNNIVIIQTKTFD-DPDVAVFDKMFILFADYSHAFKTTCRRLVIVDGWEIDSP 187
               +L  ++  +V  Q  +   DP+ A F  +F  F+     F+  CR L++VD   +   
Sbjct:   334 MSVLHSSNGLLVDWQYDSLTHDPEHASFRGLFWAFSQSIQGFQH-CRPLIVVDTKNLGGK 392

Query:   188 YKSVMLVAVFRDANNVVLPIVF 209
             YK  +++A   DA N   P+ F
Sbjct:   393 YKMKLMIASAFDATNQYFPLAF 414

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
 Identities = 47/209 (22%), Positives = 86/209 (41%)

Query:     6 KLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKR---RNYKFPLR 62
             K  V E        EC    C W + AA+++K  +  + + T  HTC      ++K    
Sbjct:   218 KCVVRETAKDEYIFECIRWKCKWSLGAARMKKHGLVEIIKYTGPHTCHPIVPEDFKSEFE 277

Query:    63 TKWNAEKFLHLWVQNPNIDFHILRYEIETCSGFKYPTWKLEAIDKTAKLWLRTDHNYGYE 122
             T    E+ +      P      L+   +   G++  T  +    + A   +  D +  +E
Sbjct:   278 TD-EIERAVRYM---PTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFE 333

Query:   123 RLFQYKNEMLKVNSNNIVIIQTK--TFDDPDVAVFDKMFILFADYSHAFKTTCRRLVIVD 180
                 +   M  + S+N +++  K   F +P+ A F  +F  F      F+  CR L++VD
Sbjct:   334 ---DFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQH-CRPLIVVD 389

Query:   181 GWEIDSPYKSVMLVAVFRDANNVVLPIVF 209
                ++  Y+  +++A   DA N   P+ F
Sbjct:   390 TKNLNCEYQLKLMIASGVDAANKYFPLAF 418

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: 4333578 transposon protein, putative, unclassified (983 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.89
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.75
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.49
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	98.98
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	97.61
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	97.46
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	94.85
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	90.8
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	90.29
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	87.48
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	85.5
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	85.01
PF13610	140	DDE_Tnp_IS240: DDE domain	84.86

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=3.3e-42  Score=362.85  Aligned_cols=295  Identities=13%  Similarity=0.139  Sum_probs=241.2

Q ss_pred             eecCCCceEEEEEEecCCCeEEEEEeCCCcccCCCCcccccchhhHHHHHhhhhhcCCCCCHHHHHHHHHHHhC----CC
Q 041890           21 CSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRRNYKFPLRTKWNAEKFLHLWVQNPNIDFHILRYEIETCSG----FK   96 (375)
Q Consensus        21 C~~~~C~w~v~a~~~~~~~~~~I~~~~~~HtC~~~~~~~~~ss~~ia~~~~~~l~~~~~~~~~~i~~~l~~~~g----vs   96 (375)
                      |+.+||+++|.+.+ ...|+|.|+.++.+|||++..... ++                 ...+.+...+....+    +.
T Consensus       156 ~tRtGC~A~m~Vk~-~~~gkW~V~~fv~eHNH~L~p~~~-~~-----------------~~~r~~~~~~~~~~~~~~~v~  216 (846)
T PLN03097        156 CAKTDCKASMHVKR-RPDGKWVIHSFVKEHNHELLPAQA-VS-----------------EQTRKMYAAMARQFAEYKNVV  216 (846)
T ss_pred             ccCCCCceEEEEEE-cCCCeEEEEEEecCCCCCCCCccc-cc-----------------hhhhhhHHHHHhhhhcccccc
Confidence            55678999999977 456899999999999998864331 11                 011112222222111    21


Q ss_pred             h-h------hhHHHHHHHHhHHHhhCChHHHHHHHHHHHHHHhhcCCCcEEEEEeeecCCCCcceeeEEEeehHHhHHHH
Q 041890           97 Y-P------TWKLEAIDKTAKLWLRTDHNYGYERLFQYKNEMLKVNSNNIVIIQTKTFDDPDVAVFDKMFILFADYSHAF  169 (375)
Q Consensus        97 ~-~------~~rak~~a~~~~~~~~g~~~~~y~~L~~yl~~l~~~Npgs~~~v~~~~~~~~~~~~f~r~f~~~~~~~~~f  169 (375)
                      . +      .-+.++  +.   .-.|    +.+.|.+||.+++..||+++|.+++|   +++  +++++||+++.++..|
T Consensus       217 ~~~~d~~~~~~~~r~--~~---~~~g----D~~~ll~yf~~~q~~nP~Ffy~~qlD---e~~--~l~niFWaD~~sr~~Y  282 (846)
T PLN03097        217 GLKNDSKSSFDKGRN--LG---LEAG----DTKILLDFFTQMQNMNSNFFYAVDLG---EDQ--RLKNLFWVDAKSRHDY  282 (846)
T ss_pred             ccchhhcchhhHHHh--hh---cccc----hHHHHHHHHHHHHhhCCCceEEEEEc---cCC--CeeeEEeccHHHHHHH
Confidence            1 0      011111  11   2223    48899999999999999999999999   899  9999999999999999


Q ss_pred             HhcCceEEEEeeeEEecCCCceEEEEEEEcCCCcEEhHHH--------------Hhhhhh----------hcCCCccHHH
Q 041890          170 KTTCRRLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVF--------------CEGICI----------MCDGDNRVDE  225 (375)
Q Consensus       170 ~~~~r~vi~lD~t~lk~~~~g~ll~a~G~d~n~~~~~laf--------------l~~L~~----------isD~~~gl~~  225 (375)
                      . ++++||.+|+||.+++|+++|.+++|+|+++|..++|+              |+.+..          |||++.+|.+
T Consensus       283 ~-~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~  361 (846)
T PLN03097        283 G-NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKS  361 (846)
T ss_pred             H-hcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHH
Confidence            8 89999999999999999999999999999999777765              344322          9999999999


Q ss_pred             HHhhhcCCCcchhhhHHHHHHHhhhCCC-----hHhHHHHHHhhh-hccHHHHHHHHHH-HHhhchhhhchhhcc--ccc
Q 041890          226 AVSKSLPYAQYRQCCFSLYNKLKEQFPL-----APVYLLFWAACK-STNKVTFQQHMML-LQDQNRDCYGWLINR--EYH  296 (375)
Q Consensus       226 Ai~~vfP~a~h~~C~~Hl~~N~~~~~~~-----~~l~~~~~~~~~-a~t~~ef~~~~~~-i~~~~~~a~~~L~~~--~~~  296 (375)
                      ||.+|||++.|++|+|||.+|+.+++..     +.+...|..+.+ +.+++||+..|.+ |.+++....+||...  .++
T Consensus       362 AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~Re  441 (846)
T PLN03097        362 VISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRK  441 (846)
T ss_pred             HHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHh
Confidence            9999999999999999999999999863     588999999886 7899999999988 467788999999984  899


Q ss_pred             ccccccCCCCcccceecCchHHHHhHHHhhc--cCCchhhHHHHHHHHHHHhhhh
Q 041890          297 CWALYCMPEWAKGTDITISAAEQLRSWLLKY--LDMNVANRFTTITRETAKNFEK  349 (375)
Q Consensus       297 ~W~~~~f~~~r~~~~~TtN~~Es~N~~l~~~--r~~pi~~~~e~i~~~~~~~~~~  349 (375)
                      +|+++||++.++++|.||+.+||+|+.|+++  +..++..|++.+.+.+-.++.+
T Consensus       442 kWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ek  496 (846)
T PLN03097        442 QWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEE  496 (846)
T ss_pred             hhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999994  7899999999998888776654

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.89  E-value=2e-24  Score=213.83  Aligned_cols=199  Identities=14%  Similarity=0.115  Sum_probs=163.4

Q ss_pred             eeeEEEeehHHhHHHHHh----cC-ceEEEEeeeEEecCCCce-----EEEEEEEcCCCcEEhHHH--------------
Q 041890          154 VFDKMFILFADYSHAFKT----TC-RRLVIVDGWEIDSPYKSV-----MLVAVFRDANNVVLPIVF--------------  209 (375)
Q Consensus       154 ~f~r~f~~~~~~~~~f~~----~~-r~vi~lD~t~lk~~~~g~-----ll~a~G~d~n~~~~~laf--------------  209 (375)
                      .+.|+.-.+.+.+..|++    .. .|+|+|||+|++.+.+|.     +++|+|+|.+|+..+||+              
T Consensus       137 ~vSri~~~~~~~~~~w~~R~L~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~  216 (381)
T PF00872_consen  137 TVSRITKQLDEEVEAWRNRPLESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREF  216 (381)
T ss_pred             hhhhhhhhhhhhHHHHhhhccccccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeec
Confidence            556666666677777865    34 678999999999986654     699999999999999997              


Q ss_pred             Hhhhhh---------hcCCCccHHHHHhhhcCCCcchhhhHHHHHHHhhhCCCh---HhHHHHHHhhhhccHHHHHHHHH
Q 041890          210 CEGICI---------MCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPLA---PVYLLFWAACKSTNKVTFQQHMM  277 (375)
Q Consensus       210 l~~L~~---------isD~~~gl~~Ai~~vfP~a~h~~C~~Hl~~N~~~~~~~~---~l~~~~~~~~~a~t~~ef~~~~~  277 (375)
                      |++|+.         |+|+++||.+||+++||++.||+|++|+++|+.++++.+   .+..+++.+..+.+.+++...++
T Consensus       217 l~~L~~RGl~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~  296 (381)
T PF00872_consen  217 LQDLKERGLKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALE  296 (381)
T ss_pred             chhhhhccccccceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhh
Confidence            566655         999999999999999999999999999999999999853   77888888888888888777776


Q ss_pred             HH----HhhchhhhchhhcccccccccccCCCCcccceecCchHHHHhHHHhhc----cCCchhhHHHHHHHHHHHhhhh
Q 041890          278 LL----QDQNRDCYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLKY----LDMNVANRFTTITRETAKNFEK  349 (375)
Q Consensus       278 ~i----~~~~~~a~~~L~~~~~~~W~~~~f~~~r~~~~~TtN~~Es~N~~l~~~----r~~pi~~~~e~i~~~~~~~~~~  349 (375)
                      ++    ...+|++.++|.+...+.|+..-||...+..++|||.+||+|+.||+.    +.+|-.+.+..+-..++...++
T Consensus       297 ~f~~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr~~~~~~Fp~~~s~lr~~~~~~~e~~~  376 (381)
T PF00872_consen  297 EFAEKWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRRTKVVGIFPNEESALRLVYAVLMEANK  376 (381)
T ss_pred             hcccccccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhhhccccccCCCHHHHHHHHHHHHHHHHh
Confidence            64    556899999999988889998888877665589999999999999984    3366666666666666666666


Q ss_pred             hcc
Q 041890          350 KVL  352 (375)
Q Consensus       350 r~~  352 (375)
                      +|.
T Consensus       377 ~w~  379 (381)
T PF00872_consen  377 KWR  379 (381)
T ss_pred             hhc
Confidence            654

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.75  E-value=4.9e-18  Score=166.03  Aligned_cols=193  Identities=13%  Similarity=0.055  Sum_probs=146.8

Q ss_pred             cCceEEEEeeeEEecC--CCceEEEEEEEcCCCcEEhHHH-------------Hhhhhh---------hcCCCccHHHHH
Q 041890          172 TCRRLVIVDGWEIDSP--YKSVMLVAVFRDANNVVLPIVF-------------CEGICI---------MCDGDNRVDEAV  227 (375)
Q Consensus       172 ~~r~vi~lD~t~lk~~--~~g~ll~a~G~d~n~~~~~laf-------------l~~L~~---------isD~~~gl~~Ai  227 (375)
                      +.+|++++||+|+|.|  -+..+++|+|++.+|+..+|++             |.+|+.         ++|+++||.+||
T Consensus       143 ~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~~~w~~~l~~l~~rgl~~v~l~v~Dg~~gl~~aI  222 (379)
T COG3328         143 GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRESKFWLSFLLDLKNRGLSDVLLVVVDGLKGLPEAI  222 (379)
T ss_pred             cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccchhHHHHHHHHHhccccceeEEecchhhhhHHHH
Confidence            4678999999999999  3556899999999999999997             344444         899999999999


Q ss_pred             hhhcCCCcchhhhHHHHHHHhhhCCCh---HhHHHHHHhhhhccHHHHHHHHH----HHHhhchhhhchhhccccccccc
Q 041890          228 SKSLPYAQYRQCCFSLYNKLKEQFPLA---PVYLLFWAACKSTNKVTFQQHMM----LLQDQNRDCYGWLINREYHCWAL  300 (375)
Q Consensus       228 ~~vfP~a~h~~C~~Hl~~N~~~~~~~~---~l~~~~~~~~~a~t~~ef~~~~~----~i~~~~~~a~~~L~~~~~~~W~~  300 (375)
                      .++||.+.||+|..|+.+|+..+.+.+   .+...+..+..+.+.++....++    .+....|....|+.+...+.|..
T Consensus       223 ~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~~~~~~F  302 (379)
T COG3328         223 SAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWRNALEELLPF  302 (379)
T ss_pred             HHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhccc
Confidence            999999999999999999999999864   55667777777776666544444    45667889999999888888887


Q ss_pred             ccCCCC-cccceecCchHHHHhHHHhhc-cCCchhhHHHHHHHHHHHhhhhh-cccccccCccccccC
Q 041890          301 YCMPEW-AKGTDITISAAEQLRSWLLKY-LDMNVANRFTTITRETAKNFEKK-VLGWVGLGAGQHHSS  365 (375)
Q Consensus       301 ~~f~~~-r~~~~~TtN~~Es~N~~l~~~-r~~pi~~~~e~i~~~~~~~~~~r-~~~~~~~~~~~~~~~  365 (375)
                      .-||.. |.. ++|||.+|++|+.++.. +-.++++--+.+.+.+....++- +.+...+||+.+++.
T Consensus       303 ~~fp~~~r~~-i~ttN~IE~~n~~ir~~~~~~~~fpn~~sv~k~~y~~~~~~~~~~r~~~~~~~a~~~  369 (379)
T COG3328         303 FAFPSEIRKI-IYTTNAIESLNKLIRRRTKVVGIFPNEESVEKLVYLVLNEANKWTRSLRGWRLAMSR  369 (379)
T ss_pred             ccCcHHHHhH-hhcchHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHhhhccccccchhhhhHH
Confidence            777765 445 99999999999988863 44444444444444443333331 344556788777654

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.49  E-value=1.3e-14  Score=114.97  Aligned_cols=67  Identities=27%  Similarity=0.389  Sum_probs=60.4

Q ss_pred             eeEEecCCCceEEE---EEEEcCCCcEEhHHH--------------Hhhhhh---------hcCCCccHHHHHhhhcCCC
Q 041890          181 GWEIDSPYKSVMLV---AVFRDANNVVLPIVF--------------CEGICI---------MCDGDNRVDEAVSKSLPYA  234 (375)
Q Consensus       181 ~t~lk~~~~g~ll~---a~G~d~n~~~~~laf--------------l~~L~~---------isD~~~gl~~Ai~~vfP~a  234 (375)
                      |||.+++| |+++.   ++|.|++|+.+|+||              |+.|+.         +||++.|+.+||+++||++
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~~p~~ii~D~~~~~~~Ai~~vfP~~   79 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQKPKVIISDFDKALINAIKEVFPDA   79 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccccCceeeeccccHHHHHHHHHHCCCc
Confidence            79999999 98875   999999999999998              444433         8999999999999999999


Q ss_pred             cchhhhHHHHHHHh
Q 041890          235 QYRQCCFSLYNKLK  248 (375)
Q Consensus       235 ~h~~C~~Hl~~N~~  248 (375)
                      .|++|.||+.+|++
T Consensus        80 ~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   80 RHQLCLFHILRNIK   93 (93)
T ss_pred             eEehhHHHHHHhhC
Confidence            99999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=98.98  E-value=7.5e-10  Score=82.45  Aligned_cols=43  Identities=26%  Similarity=0.643  Sum_probs=41.1

Q ss_pred             CCccEEEEEEeecCeEEEEEeecCCCceEEEEEEecCCCeEEE
Q 041890            1 MRDGIKLYVMENTSTFINCECSDLMCDWKVSAAKVRKSNVFVL   43 (375)
Q Consensus         1 ~~~~~~~~~~rs~~~r~~~~C~~~~C~w~v~a~~~~~~~~~~I   43 (375)
                      |+++|+|++.+||++|++++|.+.+|||+|+|++.++++.|+|
T Consensus        25 i~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen   25 IKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             HhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            5789999999999999999999999999999999999999987

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=97.61  E-value=0.00024  Score=55.71  Aligned_cols=53  Identities=11%  Similarity=0.249  Sum_probs=44.4

Q ss_pred             CccEEEEEEeecCe-------EEEEEeec----------------------CCCceEEEEEEecCCCeEEEEEeCCCccc
Q 041890            2 RDGIKLYVMENTST-------FINCECSD----------------------LMCDWKVSAAKVRKSNVFVLKEITPNHTC   52 (375)
Q Consensus         2 ~~~~~~~~~rs~~~-------r~~~~C~~----------------------~~C~w~v~a~~~~~~~~~~I~~~~~~HtC   52 (375)
                      ..||.++..++.+.       ++.++|..                      ++||++|.+.+.+ .+.|.|+.+..+|||
T Consensus         9 ~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~~~~~~HNH   87 (91)
T PF03101_consen    9 RHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVTSFVLEHNH   87 (91)
T ss_pred             cCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEEECcCCcCC
Confidence            45788887776555       78888865                      6999999999888 899999999999999


Q ss_pred             CCC
Q 041890           53 KRR   55 (375)
Q Consensus        53 ~~~   55 (375)
                      +..
T Consensus        88 ~L~   90 (91)
T PF03101_consen   88 PLC   90 (91)
T ss_pred             CCC
Confidence            864

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=97.46  E-value=0.00051  Score=55.42  Aligned_cols=53  Identities=17%  Similarity=0.365  Sum_probs=48.0

Q ss_pred             CccEEEEEEeecCeEEEEEeec------------------------------------------CCCceEEEEEEecCCC
Q 041890            2 RDGIKLYVMENTSTFINCECSD------------------------------------------LMCDWKVSAAKVRKSN   39 (375)
Q Consensus         2 ~~~~~~~~~rs~~~r~~~~C~~------------------------------------------~~C~w~v~a~~~~~~~   39 (375)
                      .+|+++.+-|||+..+.++|..                                          ..|||+|+|+......
T Consensus        17 ~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk~~CPFriRA~yS~k~k   96 (111)
T PF08731_consen   17 PQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRKNTCPFRIRANYSKKNK   96 (111)
T ss_pred             hcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccccCCCeEEEEEEEecCC
Confidence            3689999999999999999964                                          2699999999999999


Q ss_pred             eEEEEEeCCCcccCC
Q 041890           40 VFVLKEITPNHTCKR   54 (375)
Q Consensus        40 ~~~I~~~~~~HtC~~   54 (375)
                      .|.|+.+++.|+|+.
T Consensus        97 ~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   97 KWTLVVVNNEHNHPL  111 (111)
T ss_pred             eEEEEEecCCcCCCC
Confidence            999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=94.85  E-value=0.076  Score=38.45  Aligned_cols=41  Identities=12%  Similarity=0.130  Sum_probs=33.5

Q ss_pred             cCeEEEEEeecCCCceEEEEEEecCCCeEEEEEeCCCcccC
Q 041890           13 TSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCK   53 (375)
Q Consensus        13 ~~~r~~~~C~~~~C~w~v~a~~~~~~~~~~I~~~~~~HtC~   53 (375)
                      .--|-..+|+..+|+.+-.+.+..+++...++++.++|||+
T Consensus        19 ~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   19 PYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             TCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             ceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            34577799999999999999998877888889999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=90.80  E-value=0.61  Score=47.90  Aligned_cols=105  Identities=20%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             hcCCCccHHHHHhhhcCCCcchhhhHHHHHHHhhhCCC-hHhHHHHHHhhhhccHHHHHHHHHHHHhhc--h-------h
Q 041890          216 MCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPL-APVYLLFWAACKSTNKVTFQQHMMLLQDQN--R-------D  285 (375)
Q Consensus       216 isD~~~gl~~Ai~~vfP~a~h~~C~~Hl~~N~~~~~~~-~~l~~~~~~~~~a~t~~ef~~~~~~i~~~~--~-------~  285 (375)
                      .+||.++|.+++. .+|++.|++..+|+.+.+.+.++. +.+...++++.......++...++.+...-  +       +
T Consensus       263 ngDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~~d~~~l~~~L~~~~~~~~~~~~~~~i~~  341 (470)
T PF06782_consen  263 NGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKKGDKKKLETVLDTAESCAKDEEERKKIRK  341 (470)
T ss_pred             eCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence            8999999988776 999999999999999999998874 577787888888778888888887765432  1       2


Q ss_pred             hhchhhcccccccccccCCCCcccceecCchHHHHhHHHhh
Q 041890          286 CYGWLINREYHCWALYCMPEWAKGTDITISAAEQLRSWLLK  326 (375)
Q Consensus       286 a~~~L~~~~~~~W~~~~f~~~r~~~~~TtN~~Es~N~~l~~  326 (375)
                      ...||.+    +|...-....+.+ +......|+.+..+..
T Consensus       342 ~~~Yl~~----n~~~i~~y~~~~~-~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  342 LRKYLLN----NWDGIKPYREREG-LRGIGAEESVSHVLSY  377 (470)
T ss_pred             HHHHHHH----CHHHhhhhhhccC-CCccchhhhhhhHHHH
Confidence            3444443    4432100000112 4555667777766543

>smart00774 WRKY DNA binding domain

Probab=90.29  E-value=0.44  Score=34.30  Aligned_cols=40  Identities=15%  Similarity=0.085  Sum_probs=32.3

Q ss_pred             cCeEEEEEeec-CCCceEEEEEEecCCCeEEEEEeCCCccc
Q 041890           13 TSTFINCECSD-LMCDWKVSAAKVRKSNVFVLKEITPNHTC   52 (375)
Q Consensus        13 ~~~r~~~~C~~-~~C~w~v~a~~~~~~~~~~I~~~~~~HtC   52 (375)
                      ..-|-..+|+. .+|+.+-.+.+...++...++++.++|||
T Consensus        19 ~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       19 PFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            33466789998 89999888887766666777899999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=87.48  E-value=0.29  Score=46.14  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             hcCCCccHHHHHhhhcCCCcchhhhHHHHHHHhhhCCC
Q 041890          216 MCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFPL  253 (375)
Q Consensus       216 isD~~~gl~~Ai~~vfP~a~h~~C~~Hl~~N~~~~~~~  253 (375)
                      +||+.+|-..     +..+.|+.|+.|+.|.+.+....
T Consensus       124 vsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  124 VSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             eccccccccc-----ccccccccccccccccccccccc
Confidence            8999888654     33789999999999999877653

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=85.50  E-value=0.75  Score=42.61  Aligned_cols=37  Identities=16%  Similarity=0.122  Sum_probs=34.6

Q ss_pred             hcCCCccHHHHHhhhcCCCcchhhhHHHHHHHhhhCC
Q 041890          216 MCDGDNRVDEAVSKSLPYAQYRQCCFSLYNKLKEQFP  252 (375)
Q Consensus       216 isD~~~gl~~Ai~~vfP~a~h~~C~~Hl~~N~~~~~~  252 (375)
                      ++|...+..+||++.||+|.+-.-.+|+++++.+.+.
T Consensus        61 ~~Dm~~~y~~~~~~~~P~A~iv~DrFHvvk~~~~al~   97 (249)
T PF01610_consen   61 SMDMSPPYRSAIREYFPNAQIVADRFHVVKLANRALD   97 (249)
T ss_pred             EcCCCccccccccccccccccccccchhhhhhhhcch
Confidence            9999999999999999999999999999999987554

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.01  E-value=1.9  Score=30.36  Aligned_cols=46  Identities=15%  Similarity=0.214  Sum_probs=25.5

Q ss_pred             ccEEEEEEeecCeEEEEEeecC---CCceEEEEEEecCCCeEEEEEeCCCccc
Q 041890            3 DGIKLYVMENTSTFINCECSDL---MCDWKVSAAKVRKSNVFVLKEITPNHTC   52 (375)
Q Consensus         3 ~~~~~~~~rs~~~r~~~~C~~~---~C~w~v~a~~~~~~~~~~I~~~~~~HtC   52 (375)
                      +++.|...+.......-.|...   +|+.+|...  .+.  ..|.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~--~~~--~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD--AGD--GRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE----T--TEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE--CCC--CEEEECCCccCC
Confidence            5778888888889999999884   899999987  222  344455578886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=84.86  E-value=1.5  Score=37.09  Aligned_cols=57  Identities=18%  Similarity=-0.043  Sum_probs=43.0

Q ss_pred             eEEEEeeeEEecCCCceEEEEEEEcCCCcEEhHHH--------------Hhhhhh---------hcCCCccHHHHHhhhc
Q 041890          175 RLVIVDGWEIDSPYKSVMLVAVFRDANNVVLPIVF--------------CEGICI---------MCDGDNRVDEAVSKSL  231 (375)
Q Consensus       175 ~vi~lD~t~lk~~~~g~ll~a~G~d~n~~~~~laf--------------l~~L~~---------isD~~~gl~~Ai~~vf  231 (375)
                      +.+.+|-||++.+-+ ..++--++|.+++  +|+|              |+.+..         ++|+.+....|+.++.
T Consensus         2 ~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~~~p~~ivtDk~~aY~~A~~~l~   78 (140)
T PF13610_consen    2 DSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHRGEPRVIVTDKLPAYPAAIKELN   78 (140)
T ss_pred             CEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeeccccceeecccCCccchhhhhcc
Confidence            568899999987644 3455667888888  5666              222211         9999999999999999


Q ss_pred             CCC
Q 041890          232 PYA  234 (375)
Q Consensus       232 P~a  234 (375)
                      |..
T Consensus        79 ~~~   81 (140)
T PF13610_consen   79 PEG   81 (140)
T ss_pred             ccc
Confidence            874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	375
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 38/183 (20%)

Query: 183 EIDSPYKSVMLVAVFRDANNVVLPIVFCEGICIMCDGD-NRVDEAVSKSLPYAQYRQCCF 241
           E    YK   +++VF DA               + + D   V +     L   +      
Sbjct: 13  EHQYQYKD--ILSVFEDA--------------FVDNFDCKDVQDMPKSILSKEEIDHI-- 54

Query: 242 SLYNKLKEQFPLAPVYLLFWAACKSTNKVTFQQHMMLLQDQNRDCYGWLINREYHCWALY 301
                +  +  ++    LFW       ++  Q+ +  +   N   Y +L++         
Sbjct: 55  -----IMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRIN---YKFLMSP----IKTE 101

Query: 302 CMPEWAKGTDITISAAEQLRSWLLKYLDMNVANRFTTITRETAKNFEKKVLGWVGL---- 357
              + +  T + I   ++L +    +   NV +R     +      E +    V +    
Sbjct: 102 QR-QPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 358 GAG 360
           G+G
Sbjct: 160 GSG 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	375
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	93.7
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	93.53

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=93.70  E-value=0.16  Score=37.66  Aligned_cols=41  Identities=10%  Similarity=0.129  Sum_probs=35.2

Q ss_pred             eEEEEEeecCCCceEEEEEEecCCCeEEEEEeCCCcccCCC
Q 041890           15 TFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRR   55 (375)
Q Consensus        15 ~r~~~~C~~~~C~w~v~a~~~~~~~~~~I~~~~~~HtC~~~   55 (375)
                      -|-..+|+..+|+.+-.+.+...+....++++.++|||+..
T Consensus        37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            46678999999999999998877777778899999999753

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=93.53  E-value=0.14  Score=37.77  Aligned_cols=41  Identities=12%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             eEEEEEeecCCCceEEEEEEecCCCeEEEEEeCCCcccCCC
Q 041890           15 TFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRR   55 (375)
Q Consensus        15 ~r~~~~C~~~~C~w~v~a~~~~~~~~~~I~~~~~~HtC~~~   55 (375)
                      -|-..+|+..+|+.+-.+.+...+....++++.++|||+..
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            46678999999999999998877777888899999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	375
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	95.38

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.38  E-value=0.021  Score=39.79  Aligned_cols=43  Identities=9%  Similarity=0.109  Sum_probs=36.5

Q ss_pred             cCeEEEEEeecCCCceEEEEEEecCCCeEEEEEeCCCcccCCC
Q 041890           13 TSTFINCECSDLMCDWKVSAAKVRKSNVFVLKEITPNHTCKRR   55 (375)
Q Consensus        13 ~~~r~~~~C~~~~C~w~v~a~~~~~~~~~~I~~~~~~HtC~~~   55 (375)
                      ..-|-.++|+..+|+++-.+-+...++...++++.++|||+..
T Consensus        28 ~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          28 PYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             SSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            3457779999999999999998887777788899999999764