Citrus Sinensis ID: 041981

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MARKTLGLLSLMTGLASLIIMHAYGESVPVTTPFSSGRADHFHEKVRQMQEFKASFSRRDLAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG
ccccHHHHHHHHHHHHHHEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEECcccEEEECcCEEEcccccccEEEEccEEEcccccccccEEEEccccccccccEEEcccccEEEECccccccEEEEEEEEcEEEcEEEEEEEEcccEEEEcccccEEEccECccccccccccccccCEEEEEEECccccCEEEEEEEEcEEEEEEEccccEEEEEEEECcccccccEEEEEccccccEEEEEccccccccEEECccEEEEEEccCEEEccEEEEEEcccEEEEEEEEcEEccccccc
*****LGLLSLMTGLASLIIMHAYGESVPV****************************************************VYGVISYGADPTGKSDSTEAILKALSDAFNG********GISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFS*****
xxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SSSSSSSSSSSSSSSSSSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MARKTLGLLSLMTGLASLIIMHAYGESVPVTTPFSSGRADHFHEKVRQMQEFKASFSRRDLAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Polygalacturonase QRT3 Polygalacturonase required for degrading the pollen mother cell wall during microspore development.probableO49432

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.2.-.-Glycosylases.probable
3.2.1.-Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3EQN, chain A
Confidence level:very confident
Coverage over the Query: 80-235,262-351
View the alignment between query and template
View the model in PyMOL
Template: 2PYG, chain A
Confidence level:very confident
Coverage over the Query: 83-113,127-375
View the alignment between query and template
View the model in PyMOL