Citrus Sinensis ID: 041981

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MARKTLGLLSLMTGLASLIIMHAYGESVPVTTPFSSGRADHFHEKVRQMQEFKASFSRRDLAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG
ccccHHHHHHHHHHHHHHEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEcEEEEcccccccEEEEccEEEcccccccccEEEEccccccccccEEEcccccEEEEEccccccEEEEEEEEcEEEcEEEEEEEEcccEEEEcccccEEEccEEccccccccccccccEEEEEEEEEccccEEEEEEEEEcEEEEEEEccccEEEEEEEEEcccccccEEEEEccccccEEEEEccccccccEEEEccEEEEEEccEEEEccEEEEEEcccEEEEEEEEcEEccccccc
ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEccccEEEEcccEEEccccccEEEEEccEEEcccccccccEEEEEEccccccccEEEEEEHHHHHHcccccccEEEEEEcEEEEcccEEEEEEcccEEEEEcccEEEEEcccccEEEEccccccccccEEEEEEEcccccccEEEEEEEccEEEEEEcccEEEEEEEEEccccccccEEEEEEcccccEEEEEccEEcccEEEEcccEEEEEEcccEccccEEEEEccccEEEEEEEEcccccccccc
MARKTLGLLSLMTGLASLIIMHAygesvpvttpfssgradhfHEKVRQMQEFKASFSRRdlaaaatpgyapapspqvtsgprvygvisygadptgksdsTEAILKALSdafngpregsLMEGIsnlggaeihleggnyliskplrlpdagvgnlmihggtlrasddfptdgylidlsaskssssynyeyitledlmfdsnyrggAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFlgqhitaggdpgernftGTAINlmgndnavTDVVIFSAAVGIMVSgqantfsgvhcynkatgfggtgiylklpgntqtRIVNSYMDYtgivaedpvqlhisssfflGDAFIVLKSINGVAKGVNIVDNLFSGKNNG
MARKTLGLLSLMTGLASLIIMHAYGESVPVTTPFSSGRADHFHEKVRQMQEFKASFSRRDLAAAATpgyapapspqvtsgpRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDlsaskssssyNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINgvakgvnivdnlfsgknng
MARKTLGLLSLMTGLASLIIMHAYGESVPVTTPFSSGRADHFHEKVRQMQEFKASFSRRDLaaaatpgyapapspQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLsaskssssYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG
*****LGLLSLMTGLASLIIMHAYGESVPVTT**************************************************VYGVISY********************************GISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASK*SSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLF******
*****LGLLSLMTGLASLIIMHAYGESVPV******************************************************GVISYGADPTGKSDSTEAILKALSDAFNG**********SNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDN*FS*****
MARKTLGLLSLMTGLASLIIMHAYGESVPVTTPFSSGRADHFHEKVRQMQEFKASFSRRDLAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG
**RKTLGLLSLMTGLASLIIMHAYGESVP***********HFHE**RQMQEFKASFSR**LA****************SGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFS*****
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MARKTLGLLSLMTGLASLIIMHAYGESVPVTTPFSSGRADHFHEKVRQMQEFKASFSRRDLAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query379 2.2.26 [Sep-21-2011]
O49432 481 Polygalacturonase QRT3 OS yes no 0.899 0.708 0.704 1e-136
>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1 Back     alignment and function desciption
 Score =  485 bits (1249), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/345 (70%), Positives = 277/345 (80%), Gaps = 4/345 (1%)

Query: 36  SGRADHFHEKVRQMQEFKASFSRRDLAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTG 95
           SG        + +MQ  KAS  RR+L A  +    P   PQ   GPRVY VISYGADPTG
Sbjct: 31  SGSMSPHDRALAEMQALKASLVRRNLPALVS---PPPTPPQAVPGPRVYQVISYGADPTG 87

Query: 96  KSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLM 155
           K DST+AILKA+ +AF+GP  G LM+GI++LGGA I L+GG+YLIS+PLR P AG GNL+
Sbjct: 88  KLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLL 147

Query: 156 IHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNYRGGAISVINSLRTS 215
           I GGTLRAS+DFP D YLI+L    S   Y +EYITL DL+ D NYRGGAI+VINSLRTS
Sbjct: 148 ISGGTLRASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTS 207

Query: 216 IDNCYIARF-TSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVT 274
           IDNCYI RF  +NGILV+SGHETYIRNSFLGQHITAGGD GER+F+GTAINLMGNDNAVT
Sbjct: 208 IDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVT 267

Query: 275 DVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIV 334
           D VIFSA +G+MVSGQAN  SGVHCYNKATGFGGTGIYL+LPG TQ RIVNSY+DYTGIV
Sbjct: 268 DTVIFSARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIV 327

Query: 335 AEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG 379
           AEDPVQL IS +FFLGDAFI+LKSI G  +GV+IVDN+FSG  +G
Sbjct: 328 AEDPVQLQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFSGSGHG 372
Polygalacturonase required for degrading the pollen mother cell wall during microspore development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
224088096 496 predicted protein [Populus trichocarpa] 0.973 0.743 0.724 1e-150
224071045 489 predicted protein [Populus trichocarpa] 0.981 0.760 0.712 1e-148
356532616472 PREDICTED: polygalacturonase QRT3-like [ 0.944 0.758 0.707 1e-142
357449209 497 Polygalacturonase QRT3 [Medicago truncat 0.989 0.754 0.662 1e-142
359472770 505 PREDICTED: polygalacturonase QRT3-like [ 0.970 0.728 0.654 1e-141
255582738 492 conserved hypothetical protein [Ricinus 0.978 0.754 0.656 1e-139
297800020 481 hypothetical protein ARALYDRAFT_492866 [ 0.970 0.765 0.671 1e-138
15235269 481 Polygalacturonase QRT3 [Arabidopsis thal 0.899 0.708 0.704 1e-134
449433507 515 PREDICTED: polygalacturonase QRT3-like [ 0.912 0.671 0.642 1e-134
307136409 515 polygalacturonase [Cucumis melo subsp. m 0.947 0.697 0.622 1e-132
>gi|224088096|ref|XP_002335114.1| predicted protein [Populus trichocarpa] gi|224137804|ref|XP_002326444.1| predicted protein [Populus trichocarpa] gi|222832896|gb|EEE71373.1| predicted protein [Populus trichocarpa] gi|222833766|gb|EEE72243.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/381 (72%), Positives = 314/381 (82%), Gaps = 12/381 (3%)

Query: 8   LLSLMTGLASLIIMHAYGE-SVPV--TTPFSSGRADHFHEKVRQMQEFKASFSRRDLAAA 64
           + +++ GLASL I+H  GE S+P+      S GR   +H+++++MQ FK S   R   A 
Sbjct: 9   MFTILMGLASLFIVHVNGETSLPLDHQKLISDGR---YHDQMQKMQAFKHSLLTRRQLAT 65

Query: 65  ATPGYAPAPSPQVT-----SGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSL 119
                +PAP+PQ T     S PRVY V SYGADPTGK DSTEA+LKA++DAFNGP EG L
Sbjct: 66  PPISSSPAPAPQATLQPTGSRPRVYQVTSYGADPTGKVDSTEALLKAIADAFNGPSEGFL 125

Query: 120 MEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTDGYLIDLSAS 179
           M+GI+NLGGA I+L+GGNYLISKPLRLP AG GNLMI GGTL ASDDFPTDGYLIDLSAS
Sbjct: 126 MKGITNLGGAHINLQGGNYLISKPLRLPAAGAGNLMISGGTLTASDDFPTDGYLIDLSAS 185

Query: 180 KSSSS-YNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYIARFTSNGILVQSGHETY 238
            SSSS YNYEYIT++DLM D  +RGG ISVINSLRTSIDNCYI  F + GI VQ+GHETY
Sbjct: 186 SSSSSSYNYEYITIKDLMLDCKFRGGGISVINSLRTSIDNCYITHFNTEGISVQNGHETY 245

Query: 239 IRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVH 298
           IRNSFLGQHITAGGDPGER F+GTAINLMGNDNAVTDVVIFSAA+G+MVSGQANT SGVH
Sbjct: 246 IRNSFLGQHITAGGDPGERKFSGTAINLMGNDNAVTDVVIFSAAIGVMVSGQANTLSGVH 305

Query: 299 CYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKS 358
           CYNKATGFGGTGIYLKLP  TQTRIVN Y+DYTGIVAEDPVQL ISS FFLGDA+I+LKS
Sbjct: 306 CYNKATGFGGTGIYLKLPSLTQTRIVNCYLDYTGIVAEDPVQLTISSCFFLGDAYILLKS 365

Query: 359 INGVAKGVNIVDNLFSGKNNG 379
           ING+AKG+NIVDN+F+G + G
Sbjct: 366 INGLAKGINIVDNMFAGSDKG 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224071045|ref|XP_002303344.1| predicted protein [Populus trichocarpa] gi|222840776|gb|EEE78323.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532616|ref|XP_003534867.1| PREDICTED: polygalacturonase QRT3-like [Glycine max] Back     alignment and taxonomy information
>gi|357449209|ref|XP_003594881.1| Polygalacturonase QRT3 [Medicago truncatula] gi|355483929|gb|AES65132.1| Polygalacturonase QRT3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|359472770|ref|XP_003631194.1| PREDICTED: polygalacturonase QRT3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582738|ref|XP_002532146.1| conserved hypothetical protein [Ricinus communis] gi|223528182|gb|EEF30245.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297800020|ref|XP_002867894.1| hypothetical protein ARALYDRAFT_492866 [Arabidopsis lyrata subsp. lyrata] gi|297313730|gb|EFH44153.1| hypothetical protein ARALYDRAFT_492866 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15235269|ref|NP_193738.1| Polygalacturonase QRT3 [Arabidopsis thaliana] gi|145333456|ref|NP_001078410.1| Polygalacturonase QRT3 [Arabidopsis thaliana] gi|75098717|sp|O49432.1|QRT3_ARATH RecName: Full=Polygalacturonase QRT3; Short=AtQRT3; Short=PG QRT3; AltName: Full=Pectinase QRT3; AltName: Full=Protein QUARTET 3; Flags: Precursor gi|2827659|emb|CAA16613.1| putative protein [Arabidopsis thaliana] gi|7268800|emb|CAB79005.1| putative protein [Arabidopsis thaliana] gi|34874572|gb|AAQ83299.1| QRT3 [Arabidopsis thaliana] gi|34874596|gb|AAQ83300.1| QRT3 [Arabidopsis thaliana] gi|332658866|gb|AEE84266.1| Polygalacturonase QRT3 [Arabidopsis thaliana] gi|332658867|gb|AEE84267.1| Polygalacturonase QRT3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449433507|ref|XP_004134539.1| PREDICTED: polygalacturonase QRT3-like [Cucumis sativus] gi|449490642|ref|XP_004158664.1| PREDICTED: polygalacturonase QRT3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136409|gb|ADN34218.1| polygalacturonase [Cucumis melo subsp. melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
TAIR|locus:2119832 481 QRT3 "QUARTET 3" [Arabidopsis 0.881 0.694 0.702 3.5e-123
TAIR|locus:2119817 483 AT4G20040 "AT4G20040" [Arabido 0.498 0.391 0.613 5e-60
TAIR|locus:2119832 QRT3 "QUARTET 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
 Identities = 238/339 (70%), Positives = 273/339 (80%)

Query:    43 HEK-VRQMQEFKASFSRRDLXXXXXXXXXXXXXXQVTSGPRVYGVISYGADPTGKSDSTE 101
             H++ + +MQ  KAS  RR+L              Q   GPRVY VISYGADPTGK DST+
Sbjct:    37 HDRALAEMQALKASLVRRNLPALVSPPPTPP---QAVPGPRVYQVISYGADPTGKLDSTD 93

Query:   102 AILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGGTL 161
             AILKA+ +AF+GP  G LM+GI++LGGA I L+GG+YLIS+PLR P AG GNL+I GGTL
Sbjct:    94 AILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTL 153

Query:   162 RASDDFPTDGYLIDLXXXXXXXXYNYEYITLEDLMFDSNYRGGAISVINSLRTSIDNCYI 221
             RAS+DFP D YLI+L        Y +EYITL DL+ D NYRGGAI+VINSLRTSIDNCYI
Sbjct:   154 RASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYI 213

Query:   222 ARF-TSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFS 280
              RF  +NGILV+SGHETYIRNSFLGQHITAGGD GER+F+GTAINLMGNDNAVTD VIFS
Sbjct:   214 TRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFS 273

Query:   281 AAVGIMVSGQANTFSGVHCYNKATGFGGTGIYLKLPGNTQTRIVNSYMDYTGIVAEDPVQ 340
             A +G+MVSGQAN  SGVHCYNKATGFGGTGIYL+LPG TQ RIVNSY+DYTGIVAEDPVQ
Sbjct:   274 ARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQ 333

Query:   341 LHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKNNG 379
             L IS +FFLGDAFI+LKSI G  +GV+IVDN+FSG  +G
Sbjct:   334 LQISGTFFLGDAFILLKSIAGYIRGVSIVDNMFSGSGHG 372
GO:0005576 "extracellular region" evidence=ISM
GO:0010584 "pollen exine formation" evidence=RCA;IMP
GO:0004650 "polygalacturonase activity" evidence=IDA
GO:0009556 "microsporogenesis" evidence=IMP
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2119817 AT4G20040 "AT4G20040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49432QRT3_ARATH3, ., 2, ., 1, ., 1, 50.70430.89970.7089yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 8e-11
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information 
 Score = 60.9 bits (148), Expect = 8e-11
 Identities = 48/239 (20%), Positives = 70/239 (29%), Gaps = 52/239 (21%)

Query: 86  VISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLR 145
           V  +GA   G +D T AI KA+  +             +  GGA ++   G YL+S P+ 
Sbjct: 4   VKDFGAKGDGVTDDTAAIQKAICAS-------------ATTGGAVVYFPPGTYLVSSPII 50

Query: 146 LPD------AGVGNLMIHGGTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDS 199
           L         G    ++      A+  F   G    + A          Y  + + + D 
Sbjct: 51  LYSGTTLVGDGKNPPVLKLSD--AAPSFVIVGGNAVIDA-------GDPYRQIRNFVIDG 101

Query: 200 N--YRGGAISVI---NSLRTSIDNCYIARFTSNGILVQSGHETYIRNSFLGQHITAGGDP 254
                    S I    +  TSI+N  I     +GI    G                    
Sbjct: 102 TGVSPDRTGSGIHWQVAQATSIENVEIINPGLHGIDFNMG---------------TANTI 146

Query: 255 GERNFTGTAINLMGNDNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGFGGTGIYL 313
              N  G  I+       V D+V      G     Q  T               TGI +
Sbjct: 147 PGNNHQGIFIDNGSGGVMVEDLVFNGGDDGATFGSQQFTIR----NLTFNNACSTGIGI 201

This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. Length = 222

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 379
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.97
PLN02793443 Probable polygalacturonase 99.95
PLN02218431 polygalacturonase ADPG 99.94
PLN02155394 polygalacturonase 99.93
PLN03003 456 Probable polygalacturonase At3g15720 99.93
PLN03010409 polygalacturonase 99.92
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.92
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.88
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.51
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.13
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.08
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.46
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.23
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.1
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.85
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.79
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.76
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.27
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.04
PLN02793443 Probable polygalacturonase 96.93
PLN02218431 polygalacturonase ADPG 96.93
PLN03003 456 Probable polygalacturonase At3g15720 96.74
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.69
PLN02665366 pectinesterase family protein 96.63
PLN02155394 polygalacturonase 96.4
PLN03010409 polygalacturonase 96.34
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.26
PLN02682369 pectinesterase family protein 96.12
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 95.7
PLN02773317 pectinesterase 95.59
PLN02432293 putative pectinesterase 95.27
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.19
PLN02480343 Probable pectinesterase 95.18
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.91
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.74
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.66
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.6
PLN02916502 pectinesterase family protein 94.5
PLN02176340 putative pectinesterase 94.32
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.25
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 94.25
PLN02314586 pectinesterase 94.13
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.12
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 93.7
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 93.56
PLN02301548 pectinesterase/pectinesterase inhibitor 93.52
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.48
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.28
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 93.24
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.1
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.76
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 92.73
PLN02497331 probable pectinesterase 91.98
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 91.66
PLN02671359 pectinesterase 91.66
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 91.53
PLN02197588 pectinesterase 91.3
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 91.17
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 91.13
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 91.11
smart00656190 Amb_all Amb_all domain. 90.84
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 89.09
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 89.07
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 88.33
PLN02313587 Pectinesterase/pectinesterase inhibitor 87.09
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 86.56
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 86.07
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 85.42
PLN02304379 probable pectinesterase 84.95
PLN02634359 probable pectinesterase 82.67
smart00656190 Amb_all Amb_all domain. 81.25
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information 
Probab=99.97  E-value=7.7e-30  Score=258.64  Aligned_cols=258  Identities=23%  Similarity=0.297  Sum_probs=204.4

Q ss_pred             CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEEEc-
Q 041981           80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHG-  158 (379)
Q Consensus        80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~igd-  158 (379)
                      +.+.|||++|||+|||++|+|+|||+||++|.+              ++.+|.||+|+|+. +||+++.   ...+.+. 
T Consensus        34 p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa~--------------gG~tV~Lp~G~Y~~-G~L~L~s---pltL~G~~   95 (455)
T TIGR03808        34 STLGRDATQYGVRPNSPDDQTRALQRAIDEAAR--------------AQTPLALPPGVYRT-GPLRLPS---GAQLIGVR   95 (455)
T ss_pred             CccCCCHHHcCcCCCCcchHHHHHHHHHHHhhc--------------CCCEEEECCCceec-ccEEECC---CcEEEecC
Confidence            566699999999999999999999999998742              25689999999987 5999995   3333333 


Q ss_pred             cEEEecCCCCCCeEEEEecCCCCCCCCCccccceeEEEEeccc-----ccCCceEEcccceEEeeEEEEeecCCceeEee
Q 041981          159 GTLRASDDFPTDGYLIDLSASKSSSSYNYEYITLEDLMFDSNY-----RGGAISVINSLRTSIDNCYIARFTSNGILVQS  233 (379)
Q Consensus       159 GtI~A~~~f~gd~~lI~g~~~~~~~~~~~~~i~lrnl~~D~n~-----~~~gi~~~nSq~~~I~N~~i~~~ntdGIhi~~  233 (379)
                      +..+.  .+.+...+|.        ......+++++|+||+..     +..+|.+..+.++.|+||++.+.-.-||+++.
T Consensus        96 gAt~~--vIdG~~~lIi--------ai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~  165 (455)
T TIGR03808        96 GATRL--VFTGGPSLLS--------SEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLET  165 (455)
T ss_pred             CcEEE--EEcCCceEEE--------EecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEc
Confidence            33210  1112222332        123467889999999643     56789998999999999999996458999998


Q ss_pred             eeeEEEecceeeeecccCCCCCccccceeeEEecCCccEEEEEE-----E---EecceeEEEcccceeeeeeEEecCcee
Q 041981          234 GHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVV-----I---FSAAVGIMVSGQANTFSGVHCYNKATG  305 (379)
Q Consensus       234 s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn~~~vsD~~-----i---~~g~~G~~v~gqqn~i~~i~~~n~~Tg  305 (379)
                      +. ..|++..|....    +.+++.+...++.+++|  .|.++.     |   .-+.+|.++.+  |++++|+...++|+
T Consensus       166 ~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N--~I~g~RD~gi~i~r~~~~~dg~~v~~--n~i~~i~a~~gg~~  236 (455)
T TIGR03808       166 VS-GDISGNTITQIA----VTAIVSFDALGLIVARN--TIIGANDNGIEILRSAIGDDGTIVTD--NRIEDIKAGPGGSG  236 (455)
T ss_pred             Cc-ceEecceEeccc----cceEEEeccCCCEEECC--EEEccCCCCeEEEEeeecCCcceeec--cccccccccCCCcC
Confidence            76 888888777763    56699999999999999  777763     2   34789999998  99999999999999


Q ss_pred             eeeeeeEEeccc---ccceeEecceeccceEEEcCCccEEEEceeeeecceeEeeeccceeeeeEEEeeeccCCC
Q 041981          306 FGGTGIYLKLPG---NTQTRIVNSYMDYTGIVAEDPVQLHISSSFFLGDAFIVLKSINGVAKGVNIVDNLFSGKN  377 (379)
Q Consensus       306 ~~G~GI~~~~~g---~~~~~I~nCyldy~~i~~~~~~~i~I~~~~~~g~~~v~l~~~~~~~~~~~i~~n~f~~~~  377 (379)
                      +.||||++|+++   +++|+|++|  +|+||+.|+++++||.+|.|++.+||+|-..-+ -.|-.|.+|.|.|..
T Consensus       237 ~~GNGI~~~~a~~v~V~gN~I~~~--r~dgI~~nsss~~~i~~N~~~~~R~~alhymfs-~~g~~i~~N~~~g~~  308 (455)
T TIGR03808       237 QYGNAINAFRAGNVIVRGNRIRNC--DYSAVRGNSASNIQITGNSVSDVREVALYSEFA-FEGAVIANNTVDGAA  308 (455)
T ss_pred             CccccEEEEccCCeEEECCEEecc--ccceEEEEcccCcEEECcEeeeeeeeEEEEEEe-CCCcEEeccEEecCc
Confidence            999999999998   899999999  999999999999999999999999999876622 122345566665543

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 2e-09
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-08
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-07
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 4e-07
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-06
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 2e-06
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-05
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-04
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 53/290 (18%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 61  LAAAATPGYAPAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLM 120
           L      G A          P    V +YGA   G +D T AI  A++      +     
Sbjct: 28  LQNIQHQGIAAFNGNP-GGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGC--- 83

Query: 121 EGISNLGGAEIHLEGGNYLISKPLRLP-DAGVGNLMIHGGTLRASDDFP----TDGYLID 175
              +    A ++   G Y +S PL +     +     +  TL A+ +F      D     
Sbjct: 84  -DSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIALIDADPYL 142

Query: 176 LSASKSSSSYNYEYITLEDLMFDS---NYRGGAISVINSLRTSIDNCYIARFTSN----- 227
              ++   + N  + ++ + + D    +     I    S  TS+ N      T+      
Sbjct: 143 AGGAQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQ 202

Query: 228 GILVQSGHETYIRN-SFLGQHITAGGDPGERNFTGTAINLMGNDNAVTDVVIFSAAVGIM 286
           GI +++G   ++ +  F G +I  G   G + FT   +     + A+             
Sbjct: 203 GIFMENGSGGFLGDLVFNGGNI--GATFGNQQFTVRNLTFNNANTAI-----------NA 249

Query: 287 VSGQANTFSGVHCYNKATGF---GGTGIYLKLPGNTQTRIVNSYMDYTGI 333
           +     TF  +   N   GF    G        G     I+++ +  T  
Sbjct: 250 IWNWGWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQT 299
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.88
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.88
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.88
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.87
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.87
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.81
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.8
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.69
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.64
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.58
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.48
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.44
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.38
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.37
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.32
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.28
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.23
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.13
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.05
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 98.86
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.3
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.28
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.21
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.15
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 98.11
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.07
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.93
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.76
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.76
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.74
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.4
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.34
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.29
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.28
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.13
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 96.73
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.6
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.5
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.45
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.96
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 95.8
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 95.73
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 95.61
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.56
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 95.53
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.07
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.64
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 93.89
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 93.72
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 93.53
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 92.95
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 91.98
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 91.74
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 91.45
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 91.37
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 90.86
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 89.33
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 87.97
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 87.95
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 87.49
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 84.44
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 84.21
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 82.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 81.26
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-33  Score=298.03  Aligned_cols=227  Identities=22%  Similarity=0.213  Sum_probs=176.4

Q ss_pred             CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEEEc-
Q 041981           80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHG-  158 (379)
Q Consensus        80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~igd-  158 (379)
                      .+..+||+||||+|||++|||+|||+||++|.   +|+..|.+++.. +++||||+|+|+|++||.++   ++++++++ 
T Consensus        46 y~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~~a~---~~Gggc~~st~~-~~~V~~P~GtYlvs~tI~l~---~~t~L~G~~  118 (758)
T 3eqn_A           46 YPVFRNVKNYGAKGDGNTDDTAAIQAAINAGG---RCGQGCDSTTTQ-PALVYFPPGTYKVSSPLVVL---YQTQLIGDA  118 (758)
T ss_dssp             CCSEEEGGGGTCCCEEEEECHHHHHHHHHTTS---CSCTTCCCCSSS-CEEEEECSSEEEESSCEECC---TTEEEEECS
T ss_pred             CeEEEEHHHcCcCCCCCchhHHHHHHHHHHhh---hccccccccccc-ceEEEECCceEEEcccEEcc---CCeEEEecC
Confidence            44556999999999999999999999999873   334446666554 78999999999999999999   58888887 


Q ss_pred             ---cEEEecCCCCCCeEEEEecCC-----CCCCCCCccccceeEEEEecccc---cCCceEEcccceEEeeEEEEeecCC
Q 041981          159 ---GTLRASDDFPTDGYLIDLSAS-----KSSSSYNYEYITLEDLMFDSNYR---GGAISVINSLRTSIDNCYIARFTSN  227 (379)
Q Consensus       159 ---GtI~A~~~f~gd~~lI~g~~~-----~~~~~~~~~~i~lrnl~~D~n~~---~~gi~~~nSq~~~I~N~~i~~~ntd  227 (379)
                         ++||+.++|.+.. +|++...     .|+.++++|++++|||+||.+..   ..+|||..+|+++|+||+|.+....
T Consensus       119 ~~~pvIka~~~F~G~~-li~~d~y~~~G~~w~~~~~~F~r~irNlviD~t~~~~~~~gIhw~vaQatsL~Nv~i~m~~~s  197 (758)
T 3eqn_A          119 KNLPTLLAAPNFSGIA-LIDADPYLAGGAQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQMSTAA  197 (758)
T ss_dssp             SSCCEEEECTTCCSSC-SEESSCBCGGGCBSSCGGGCCCEEEEEEEEECTTCSSCEEEEECCCCSSEEEEEEEEECCCST
T ss_pred             CCCCeEecCCCCCCcc-eeeccccCCCCccccccccceeeeecceEEeccccCCCceEEEEEecCceEEEEEEEEecCCC
Confidence               6999999998866 7776433     25677889999999999997655   3578999999999999999995322


Q ss_pred             ceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCC-ccEEEEEEEEecceeEEEcccceeeeeeEEecCceee
Q 041981          228 GILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGN-DNAVTDVVIFSAAVGIMVSGQANTFSGVHCYNKATGF  306 (379)
Q Consensus       228 GIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn-~~~vsD~~i~~g~~G~~v~gqqn~i~~i~~~n~~Tg~  306 (379)
                      |    ..|                          .||.|+.+ .++|+|++|.+|++|+.+++||+++||++|++|.|++
T Consensus       198 g----~~~--------------------------~GI~~e~GSgg~i~Dl~f~GG~~G~~~gnQQfT~rnltF~~~~taI  247 (758)
T 3eqn_A          198 G----NQH--------------------------QGIFMENGSGGFLGDLVFNGGNIGATFGNQQFTVRNLTFNNANTAI  247 (758)
T ss_dssp             T----CCE--------------------------EEEEECSCCCCEEEEEEEESCSEEEEEECSCCEEEEEEEESCSEEE
T ss_pred             C----Ccc--------------------------eeEEecCCCceEEEeeEEeCCceEEEcCCcceEEeccEEeChHHHH
Confidence            2    112                          56666654 4499999999999999999999999999999999987


Q ss_pred             eeeeeEEeccc--ccceeEecceeccceEEEcC--C--------ccEEEEceeeeec
Q 041981          307 GGTGIYLKLPG--NTQTRIVNSYMDYTGIVAED--P--------VQLHISSSFFLGD  351 (379)
Q Consensus       307 ~G~GI~~~~~g--~~~~~I~nCyldy~~i~~~~--~--------~~i~I~~~~~~g~  351 (379)
                      .-.+    -++  +....|.||-.   ||.+..  +        ..+.|.++.|...
T Consensus       248 ~~~w----~wgwt~~~~~i~nc~v---Gi~~~~g~~~~~~~q~vGsv~l~Ds~~~n~  297 (758)
T 3eqn_A          248 NAIW----NWGWTFQRITINNCQV---GFDLTQGGTSNTGAQGVGAEAIIDAVVTNT  297 (758)
T ss_dssp             EEEE----BSCEEEEEEEEESCSE---EEEECCCCSSTTSCCCBCEEEEEEEEEESC
T ss_pred             hhhc----CceEEEEEeEEECCCc---cEEEcCCCCCcccCcceeeEEEEEeeEEcc
Confidence            5332    122  45678888864   444432  1        2577777777654
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 379
d1rmga_ 422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 9e-07
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 16/101 (15%)

Query: 70  APAPSPQVTSGPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGA 129
            P  S       +   ++SYGA     +D   AI  A +                   G 
Sbjct: 7   GPLTSASTKGATKTCNILSYGAVADNSTDVGPAITSAWAACK---------------SGG 51

Query: 130 EIHLEGGNYLISKPLRLPDAGVGNLMIHGGTLRASDDFPTD 170
            +++  GNY ++  + L       + +  G +  +     +
Sbjct: 52  LVYIPSGNYALNTWVTLTGGSATAIQL-DGIIYRTGTASGN 91

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.92
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.66
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.65
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.52
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.37
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.36
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.23
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.03
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 98.23
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.97
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.96
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 97.91
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.59
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.07
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.88
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.83
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.47
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 95.82
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.62
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.25
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 94.86
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.78
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.54
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 92.43
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 92.34
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 92.17
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 81.2
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=99.92  E-value=2.7e-25  Score=223.06  Aligned_cols=191  Identities=15%  Similarity=0.183  Sum_probs=116.4

Q ss_pred             CCceeEeeecCccCCCCCchHHHHHHHHHHhcCCCCCCCccccccccCccEEEEcCCEEEEecceEecCCCcccEEEEcc
Q 041981           80 GPRVYGVISYGADPTGKSDSTEAILKALSDAFNGPREGSLMEGISNLGGAEIHLEGGNYLISKPLRLPDAGVGNLMIHGG  159 (379)
Q Consensus        80 ~~~v~nV~dyGA~gDG~tDdT~Aiq~Ai~~A~~~~~~~~~~~g~t~~ggavV~lP~GtYlVs~pI~f~gpc~gti~igdG  159 (379)
                      ..++|||+||||+|||++|||+|||+||+ ||+              ++++||||+|+|+|++||.|.+||.-. +..+|
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--------------~gg~V~iP~Gty~l~~~i~l~g~~~~~-l~~~G   80 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--------------SGGLVYIPSGNYALNTWVTLTGGSATA-IQLDG   80 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--------------BTCEEEECSSEEEECSCEEEESCEEEE-EEECS
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--------------CCCEEEECCCcEEEeCcEEEcCCCceE-EEEeE
Confidence            57799999999999999999999999996 654              256899999999999999999876322 23579


Q ss_pred             EEEecCCCCCCeE-----------------EEEecCCCCCCCCCccccceeEEEEe--cccccCCceEEccc--------
Q 041981          160 TLRASDDFPTDGY-----------------LIDLSASKSSSSYNYEYITLEDLMFD--SNYRGGAISVINSL--------  212 (379)
Q Consensus       160 tI~A~~~f~gd~~-----------------lI~g~~~~~~~~~~~~~i~lrnl~~D--~n~~~~gi~~~nSq--------  212 (379)
                      +|+++....+.-.                 .|++.+..|+.......   +-|.|.  .+....+++++|++        
T Consensus        81 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~~~~p---~~l~~~~~~n~~i~git~~nsp~~~i~i~~  157 (422)
T d1rmga_          81 IIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGA---RILRLTDVTHFSVHDIILVDAPAFHFTMDT  157 (422)
T ss_dssp             EEEECCCCSSEEEEEEEEEEEEEECSSSCCEEECCTHHHHTTTCCCC---EEEEEEEEEEEEEEEEEEECCSSCSEEEEE
T ss_pred             EEEeccCCccCEEEeccCccEEEEEeecceEEecCcceecCCCCCCC---cEEEEEeeeeeEEECcEecCCCceEEEEec
Confidence            9988765443210                 22332221222111111   112221  22333455555554        


Q ss_pred             --ceEEeeEEEEee---cCCceeEeeeeeEEEecceeeeecccCCCCCccccceeeEEecCC-cc-EEEEEEEEecceeE
Q 041981          213 --RTSIDNCYIARF---TSNGILVQSGHETYIRNSFLGQHITAGGDPGERNFTGTAINLMGN-DN-AVTDVVIFSAAVGI  285 (379)
Q Consensus       213 --~~~I~N~~i~~~---ntdGIhi~~s~~v~I~ns~Ig~~~~~ggd~~~~~~~gtGI~i~gn-~~-~vsD~~i~~g~~G~  285 (379)
                        .+.|+|++|...   ||||||+.. +++.|+||.|.+.     |..        |.+..+ .+ .|.++.... ..|+
T Consensus       158 c~~v~i~nv~I~~~~~~NtDGIdi~~-snv~I~n~~i~~g-----DDc--------Iaiks~s~nI~i~n~~c~~-g~Gi  222 (422)
T d1rmga_         158 CSDGEVYNMAIRGGNEGGLDGIDVWG-SNIWVHDVEVTNK-----DEC--------VTVKSPANNILVESIYCNW-SGGC  222 (422)
T ss_dssp             EEEEEEEEEEEECCSSTTCCSEEEEE-EEEEEEEEEEESS-----SEE--------EEEEEEEEEEEEEEEEEES-SSEE
T ss_pred             cccEEEEeeEEcCCCCCccceEeecc-cEEEEEeeEEEcC-----CCc--------cccCCCCccEEEEeeEEcc-ccce
Confidence              455566666542   889999976 5799999998764     322        222222 23 555554432 3355


Q ss_pred             EEcc--cceeeeeeEEecCce
Q 041981          286 MVSG--QANTFSGVHCYNKAT  304 (379)
Q Consensus       286 ~v~g--qqn~i~~i~~~n~~T  304 (379)
                      .++.  +...+++|.+.||..
T Consensus       223 siGs~g~~~~V~nV~v~n~~~  243 (422)
T d1rmga_         223 AMGSLGADTDVTDIVYRNVYT  243 (422)
T ss_dssp             EEEEECTTEEEEEEEEEEEEE
T ss_pred             eEeeccCCCCEEEEEEEeEEE
Confidence            5543  334455555555543
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure