Citrus Sinensis ID: 041986

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC
Secondary Structure (PSIPRED)
ccccccccccEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEEccccccccccEEEEccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccHccccEEEEEEcccEEEEEEccHHHHHHHcHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcEEcccHHHHHHHccEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHcc
Coil and Loop (DISEMBL)
mglkqssqIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYEswennsgvdfvvikgngrsfcaggdVVGAYRMLKEGRVEECKELFRTLYSFVYLVAtyskphvaimdgitmgggaGIAVHASYRLATEKTVFAMPEvligfhpdvgssyylsrlpghlgeylgltgatlsgEEMLFCGLATHYSLSAVC
Flexible Loop (DISEMBL)
mglkqssqiHVLVeeransrtvilnrPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC
Low Complexity Region (SEG)
MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC
Disordered region (IsUnstruct)
*********HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSL****
Disordered Region (DISOPRED)
***********LVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC
Disordered Region (DISEMBL)
********IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC
Disordered Region (DISPRO)
*****SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSLS*VC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q8RXN4	409	3-hydroxyisobutyryl-CoA h	yes	no	0.943	0.449	0.592	7e-61
Q6NMB0	378	Probable 3-hydroxyisobuty	no	no	0.943	0.486	0.516	7e-54
Q9LKJ1	378	3-hydroxyisobutyryl-CoA h	no	no	0.969	0.5	0.518	1e-53
Q5XF59	401	3-hydroxyisobutyryl-CoA h	no	no	0.923	0.448	0.577	9e-53
Q1PEY5	378	Probable 3-hydroxyisobuty	no	no	0.943	0.486	0.5	1e-49
O74802	429	3-hydroxyisobutyryl-CoA h	yes	no	0.943	0.428	0.445	4e-43
Q5ZJ60	385	3-hydroxyisobutyryl-CoA h	yes	no	0.938	0.475	0.448	7e-41
Q8QZS1	385	3-hydroxyisobutyryl-CoA h	yes	no	0.917	0.464	0.447	1e-40
Q5XIE6	385	3-hydroxyisobutyryl-CoA h	no	no	0.948	0.480	0.433	1e-40
Q58EB4	382	3-hydroxyisobutyryl-CoA h	yes	no	0.917	0.468	0.453	2e-40

>sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1

 Score =  233 bits (593), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 109/184 (59%), Positives = 134/184 (72%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VLVE +A SR  ILN P  LNAL+  MV  L + YESWE N  + FV++KG+G++FC+G
Sbjct: 42  QVLVEGKAKSRAAILNNPSSLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSG 101

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            DV+  Y  + EG  EE K  F  LY FVYL  TY KP++AIMDG+TMG G GI++   +
Sbjct: 102 ADVLSLYHSINEGNTEESKLFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMF 161

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           R+AT+KTV A PEV IGFHPD G+SYYLSRLPG+LGEYL LTG  L+G EM+ CGLATHY
Sbjct: 162 RVATDKTVLAHPEVQIGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHY 221

Query: 190 SLSA 193
            L+A
Sbjct: 222 CLNA 225

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q6NMB0|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1

 Score =  209 bits (533), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 133/184 (72%)

Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           +SQ  VLVEE+++ R + LNRP  LNAL  +M++ L + + ++E +  V  V++KG GR+
Sbjct: 2   ASQSQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRA 61

Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
           FCAGGDV    + + +G+     + FR  Y+  Y++ATYSKP V+I++GI MG GAG+++
Sbjct: 62  FCAGGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSI 121

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
           H  +R+ATE TVFAMPE  +G  PDVG+SY+LSRLPG  GEY+GLTGA L G E+L CGL
Sbjct: 122 HGRFRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGL 181

Query: 186 ATHY 189
           ATH+
Sbjct: 182 ATHF 185

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1

 Score =  208 bits (530), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/189 (51%), Positives = 134/189 (70%)

Query: 1   MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           M ++ +SQ  VLVEE+++ R + LNRP  LNAL+  M++ L + + ++E +  V  V++K
Sbjct: 1   MAVEMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILK 60

Query: 61  GNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGG 120
           G+GR+FCAGGDV    R + +G        F + Y   Y++ATYSK  V+I++GI MGGG
Sbjct: 61  GHGRAFCAGGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGG 120

Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEM 180
           AG++VH  +R+ATE TVFAMPE  +G  PDVG+SY+LSRLPG  GEY+GLTGA L G EM
Sbjct: 121 AGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEM 180

Query: 181 LFCGLATHY 189
           L CGLATH+
Sbjct: 181 LACGLATHF 189

Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5XF59|HIBC4_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1

 Score =  206 bits (524), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 104/180 (57%), Positives = 134/180 (74%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VLVE    SRT ILNRP  LNAL T M   L K Y++WE +  + FV++KG+GR+FCAG
Sbjct: 38  QVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAG 97

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD+V  Y +   G  +  +E F +LYSF+YL+ TY KPHVAI++G+TMGGG G+++  ++
Sbjct: 98  GDIVSLYHLRTRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTF 157

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           R+AT++T+FA PE +IGFHPD G+S+ LS LPG LGEYLGLTG  LSG EML CGLATHY
Sbjct: 158 RVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLACGLATHY 217

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q1PEY5|HIBC2_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 2 OS=Arabidopsis thaliana GN=At2g30650 PE=2 SV=1

 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/184 (50%), Positives = 129/184 (70%)

Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           +S   VLVEE+++ R +  NRP  LNAL+  MV+ L + + ++E +  V  VV+KG GR+
Sbjct: 2   ASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRA 61

Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
           F AGGD+    R + +G++      F+  Y+  Y+++TY KP V+I++GI MGGGAG++ 
Sbjct: 62  FSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLST 121

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
           +  +R+ATE TVFAMPE  +G  PDVG+SY+LSRLPG  GEY+GLTGA L G EML CGL
Sbjct: 122 NGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGL 181

Query: 186 ATHY 189
           ATH+
Sbjct: 182 ATHF 185

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|O74802|HIBCH_SCHPO 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ehd3 PE=3 SV=1

 Score =  174 bits (440), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 120/184 (65%)

Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           SS   VL E +  +R   LNRP VLNA+N  M+  +  +  S E ++    +++KGNGRS
Sbjct: 53  SSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRS 112

Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
           F +GGD+  A   +++G++ E +  F   Y   + +ATY KP VA+M+GITMGGG+G+A+
Sbjct: 113 FSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAM 172

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
           H  +R+A E T+FAMPE  IG+  DV +S++ SRLPG+ G YLGLT   + G + L  G+
Sbjct: 173 HVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGI 232

Query: 186 ATHY 189
           ATH+
Sbjct: 233 ATHF 236

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has an indirect role in endocytic membrane trafficking. May have a function in protein biosynthesis in mitochondrial small ribosomal subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1

 Score =  166 bits (421), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 115/185 (62%), Gaps = 2/185 (1%)

Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-R 64
            S   VL++++  +  + LNRP VLNAL+  M+  +  Q ++WE +     ++IKG G +
Sbjct: 32  DSAADVLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEK 91

Query: 65  SFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIA 124
           +FCAGGDV       K G     ++ FR  Y     + T  KP+VA++DGITMGGG G++
Sbjct: 92  AFCAGGDVRAIADAGKAGDTM-TRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLS 150

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCG 184
           VH  +R+ATEKTVFAMPE  IG  PDVG  Y+L RL G +G  L LTG  L G ++L  G
Sbjct: 151 VHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAG 210

Query: 185 LATHY 189
           +ATH+
Sbjct: 211 IATHF 215

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q8QZS1|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 116/181 (64%), Gaps = 2/181 (1%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG-NGRSFCA 68
            VL+E R     + LNRP  LNAL+ +M+  +  Q ++WE +     ++IKG  G++FCA
Sbjct: 36  EVLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCA 95

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           GGD+  A    K+ R    ++LFR  Y     +A+  KP+VA++DGITMGGG G++VH  
Sbjct: 96  GGDI-KALSEAKKARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQ 154

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATH 188
           +R+ATE+++FAMPE  IG  PDVG  Y+L RL G LG +L LTG  L G ++   G+ATH
Sbjct: 155 FRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGYRLKGRDVHRAGIATH 214

Query: 189 Y 189
           +
Sbjct: 215 F 215

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5XIE6|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 118/187 (63%), Gaps = 2/187 (1%)

Query: 4   KQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG-N 62
           K +    VL+E R  +  + LNRP +LNAL+ +M+  +  Q + WE +     ++IKG  
Sbjct: 30  KHTETAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAG 89

Query: 63  GRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAG 122
           G++FCAGGD+       K G+    ++LFR  Y     +A+  KP+VA++DGITMGGG G
Sbjct: 90  GKAFCAGGDIKALSEAKKAGQTL-SQDLFREEYILNNAIASCQKPYVALIDGITMGGGVG 148

Query: 123 IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLF 182
           ++VH  +R+ATE+++FAMPE  IG  PDVG  Y+L RL G LG +L LTG  L G ++  
Sbjct: 149 LSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVHR 208

Query: 183 CGLATHY 189
            G+ATH+
Sbjct: 209 AGIATHF 215

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q58EB4|HIBCH_DANRE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 113/181 (62%), Gaps = 2/181 (1%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCA 68
            VL E+   +  + LNRP  LNAL  +M+  +  Q + W+ +S  D V+IKG G ++FCA
Sbjct: 33  EVLFEKVGKAGVITLNRPKALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCA 92

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           GGD+       K G +   +  FR  Y     + TY KP+VA+++GITMGGG G++VH  
Sbjct: 93  GGDIRAIAEAGKAGNLL-SQVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQ 151

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATH 188
           +R+ATEKT+FAMPE  IG  PDVG  Y+L RL G LG +L LTG  L G ++   G+ATH
Sbjct: 152 FRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFLALTGFRLKGRDVQRVGVATH 211

Query: 189 Y 189
           +
Sbjct: 212 F 212

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
224137860	363	predicted protein [Populus trichocarpa]	0.943	0.506	0.716	2e-73
255579623	403	catalytic, putative [Ricinus communis] g	0.938	0.454	0.699	9e-72
255541138	415	catalytic, putative [Ricinus communis] g	0.938	0.440	0.661	7e-70
357512815	401	3-hydroxyisobutyryl-CoA hydrolase-like p	0.953	0.463	0.634	7e-67
225430480	407	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.953	0.457	0.645	9e-67
225453474	405	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.943	0.454	0.641	5e-66
449531651	264	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.943	0.696	0.630	6e-65
449455517	404	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.943	0.455	0.630	8e-65
297744387	438	unnamed protein product [Vitis vinifera]	0.948	0.422	0.637	3e-64
359495966	397	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.938	0.460	0.644	5e-64

>gi|224137860|ref|XP_002326458.1| predicted protein [Populus trichocarpa] gi|222833780|gb|EEE72257.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 155/187 (82%), Gaps = 3/187 (1%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VLVE+  NSR +ILNRPHVLNAL T M   L K YESW N+  VDF+V+KGNGR+FCAG
Sbjct: 1   QVLVEKGTNSRVLILNRPHVLNALTTPMGHRLAKLYESWANDPVVDFIVLKGNGRAFCAG 60

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GDVV  YR++ EG++EECK+ FRT YSFV+L++TY KPHVAI+DGITMGGGAGI+VH S+
Sbjct: 61  GDVVRLYRLINEGKIEECKDCFRTFYSFVFLLSTYLKPHVAILDGITMGGGAGISVHGSF 120

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHL---GEYLGLTGATLSGEEMLFCGLA 186
           R+AT+KTVFA PEVLIG HPD G+SYYLSRLPG L   GEYLGLTG  LSGEEML CGLA
Sbjct: 121 RIATDKTVFATPEVLIGLHPDAGASYYLSRLPGCLGKDGEYLGLTGDMLSGEEMLACGLA 180

Query: 187 THYSLSA 193
           THYS +A
Sbjct: 181 THYSPNA 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579623|ref|XP_002530652.1| catalytic, putative [Ricinus communis] gi|223529785|gb|EEF31721.1| catalytic, putative [Ricinus communis]

 Score =  275 bits (702), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 128/183 (69%), Positives = 153/183 (83%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           V VEER+NSRTVILNRPHVLNAL T M   LT+ Y+SWE +  V FVV+KGNGR+FCAGG
Sbjct: 39  VQVEERSNSRTVILNRPHVLNALTTPMGVRLTELYQSWEKDPLVGFVVLKGNGRAFCAGG 98

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           DVV  Y+++ EGR+EECK+ FRT YSF+YL+ TY KPHVAI+DGITMGGGAG++VH S+R
Sbjct: 99  DVVKLYQLITEGRLEECKDCFRTFYSFMYLLGTYLKPHVAILDGITMGGGAGLSVHGSHR 158

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYS 190
           +ATEKTVF +PE+LIG HPD G+SYYL RLPG+LGEYLGLT   +SGEEM+ CGLAT + 
Sbjct: 159 VATEKTVFGVPEILIGLHPDAGASYYLPRLPGYLGEYLGLTADRISGEEMVACGLATQFL 218

Query: 191 LSA 193
            SA
Sbjct: 219 SSA 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541138|ref|XP_002511633.1| catalytic, putative [Ricinus communis] gi|223548813|gb|EEF50302.1| catalytic, putative [Ricinus communis]

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 152/183 (83%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VLVE +A SRT ILNRP  LNALNT+M A L K Y+SWE N  V FV++KG+GR+FCAG
Sbjct: 48  QVLVESKAYSRTAILNRPSALNALNTNMGARLLKLYKSWEENPDVGFVMMKGSGRAFCAG 107

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD+V  Y ++K+G++E+CKE FRTLY+F+Y++ TY KPHVAI+DGITMGGGAG+++  ++
Sbjct: 108 GDIVTLYNLVKKGKLEDCKEFFRTLYTFIYILGTYLKPHVAILDGITMGGGAGVSIPGTF 167

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           R+AT+KTVFA PE LIGFHPD G+S++LS LPGHLGEYL LTG TL+G EM+ CGLATHY
Sbjct: 168 RIATDKTVFATPETLIGFHPDAGASFHLSHLPGHLGEYLALTGETLNGVEMIACGLATHY 227

Query: 190 SLS 192
           S S
Sbjct: 228 SYS 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512815|ref|XP_003626696.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] gi|355520718|gb|AET01172.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula]

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/186 (63%), Positives = 147/186 (79%)

Query: 8   QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFC 67
           Q +VLVE    SR  +LNRP  LNA+NT+M A L K Y SWE+N  + FV++KG GR+F 
Sbjct: 35  QDNVLVEGNGYSRLALLNRPSSLNAINTNMAARLHKLYRSWEDNPDIGFVMLKGTGRAFA 94

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
           AGGD+V  YR +K+G +E CK+ FRT YSF+YL+ TY KPHVA+++GITMGGGAGI++  
Sbjct: 95  AGGDIVSLYRFIKQGNLEACKQFFRTAYSFIYLIGTYLKPHVALLNGITMGGGAGISIPG 154

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLAT 187
           ++RLAT+KTVFA PEVLIGFHPD  +S+YLSRLPGH+GEYL LTG  L+G EM+ CGLAT
Sbjct: 155 TFRLATDKTVFATPEVLIGFHPDAAASFYLSRLPGHIGEYLALTGEKLNGVEMVACGLAT 214

Query: 188 HYSLSA 193
           HYSL A
Sbjct: 215 HYSLLA 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430480|ref|XP_002283319.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera] gi|296082135|emb|CBI21140.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 120/186 (64%), Positives = 147/186 (79%)

Query: 8   QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFC 67
           Q  VLVE RA SR  ILNRP  LNAL   MVA L + YESWE NS + FV++KG+GR+ C
Sbjct: 41  QEQVLVEGRAKSRAAILNRPSDLNALTIPMVARLKRLYESWEENSDLGFVIMKGSGRALC 100

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
           +GGDVV   +++ EG+VEECK+ F TLY FVYL+ TY KP+VAI+DGITMGGGAGI++ A
Sbjct: 101 SGGDVVALNQLINEGKVEECKKFFETLYKFVYLLGTYVKPNVAIVDGITMGGGAGISIPA 160

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLAT 187
            +R+ T+KTVFA PE  +GFHPD G+S+YLSRLPG+LGEYL LTG  L+G EM+ CGLAT
Sbjct: 161 MFRVVTDKTVFATPETQMGFHPDAGASFYLSRLPGYLGEYLALTGEKLNGVEMIACGLAT 220

Query: 188 HYSLSA 193
           HYSL+A
Sbjct: 221 HYSLTA 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453474|ref|XP_002274299.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial [Vitis vinifera] gi|297734569|emb|CBI16620.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (652), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 147/184 (79%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VLVE    SRT ILNRPHVLNALNTSM A L   Y+SWE N  + FVV+KG+GR+FCAG
Sbjct: 41  EVLVEGEGCSRTAILNRPHVLNALNTSMGARLQNLYKSWEENPDIGFVVMKGSGRAFCAG 100

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD+VG Y ++ +GR+E+CKE F T+YSF+YLV TY KP+VAI+DGITMGGGAG+++   +
Sbjct: 101 GDIVGLYNLINKGRIEDCKEFFGTVYSFIYLVGTYLKPNVAILDGITMGGGAGVSIPGMF 160

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           R+AT++TVFA PE LIGFH D G+S++LS LPG+ GEYL LTG  L+G EM+ CGLATHY
Sbjct: 161 RVATDRTVFATPETLIGFHTDAGASFHLSHLPGYWGEYLALTGEKLNGPEMIACGLATHY 220

Query: 190 SLSA 193
           + SA
Sbjct: 221 APSA 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531651|ref|XP_004172799.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial-like, partial [Cucumis sativus]

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 141/184 (76%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            V+VE + NSR  ILNRP  LNAL TSMVA L + YESWE NS + FV++KG+GR+FC+G
Sbjct: 41  QVMVEGKPNSRAAILNRPSALNALTTSMVARLNRLYESWEENSSIGFVLMKGSGRAFCSG 100

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            DVV  Y +  EG +E+CK+ F TLY FVYL  TY KPHVA++DGI MG GAGI +   +
Sbjct: 101 ADVVALYNLSNEGNIEDCKKFFETLYKFVYLQGTYLKPHVALLDGIMMGAGAGIVLPGLF 160

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           RL T KTVF+ PEV +GFHPD G+S+YLSRLPG+LGEYL LTG  L+G EM+ CGLATHY
Sbjct: 161 RLVTNKTVFSHPEVQMGFHPDAGASFYLSRLPGYLGEYLALTGDKLNGVEMIACGLATHY 220

Query: 190 SLSA 193
           SL+A
Sbjct: 221 SLTA 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455517|ref|XP_004145499.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial-like [Cucumis sativus]

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 141/184 (76%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            V+VE + NSR  ILNRP  LNAL TSMVA L + YESWE NS + FV++KG+GR+FC+G
Sbjct: 41  QVMVEGKPNSRAAILNRPSALNALTTSMVARLNRLYESWEENSSIGFVLMKGSGRAFCSG 100

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            DVV  Y +  EG +E+CK+ F TLY FVYL  TY KPHVA++DGI MG GAGI +   +
Sbjct: 101 ADVVALYNLSNEGNIEDCKKFFETLYKFVYLQGTYLKPHVALLDGIMMGAGAGIVLPGLF 160

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           RL T KTVF+ PEV +GFHPD G+S+YLSRLPG+LGEYL LTG  L+G EM+ CGLATHY
Sbjct: 161 RLVTNKTVFSHPEVQMGFHPDAGASFYLSRLPGYLGEYLALTGDKLNGVEMIACGLATHY 220

Query: 190 SLSA 193
           SL+A
Sbjct: 221 SLTA 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744387|emb|CBI37361.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/185 (63%), Positives = 147/185 (79%)

Query: 9   IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
             VLVE +A+SR V LNRPHVLNA+ T M   L + YESWE +    FVVIKG+G++F A
Sbjct: 73  FQVLVEGKASSRIVTLNRPHVLNAVVTPMGVRLIELYESWEKDPHFGFVVIKGSGKAFSA 132

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           GGDVV  Y+ + EGR+E+CK+ FRT YS +YL+ TY KPHVA++DG+TMG GAGI+V  +
Sbjct: 133 GGDVVCLYQFMDEGRLEDCKDCFRTFYSLMYLIHTYMKPHVALIDGVTMGAGAGISVLGT 192

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATH 188
           + +AT++TVF  PE LIGFHPD G+SY+LS LPG+LGEY+GLTGATLSG EM+ CGLATH
Sbjct: 193 FCVATDRTVFGTPEALIGFHPDGGASYFLSHLPGYLGEYMGLTGATLSGAEMVACGLATH 252

Query: 189 YSLSA 193
           YSLSA
Sbjct: 253 YSLSA 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495966|ref|XP_002266134.2| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera]

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 147/183 (80%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           VLVE +A+SR V LNRPHVLNA+ T M   L + YESWE +    FVVIKG+G++F AGG
Sbjct: 34  VLVEGKASSRIVTLNRPHVLNAVVTPMGVRLIELYESWEKDPHFGFVVIKGSGKAFSAGG 93

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           DVV  Y+ + EGR+E+CK+ FRT YS +YL+ TY KPHVA++DG+TMG GAGI+V  ++ 
Sbjct: 94  DVVCLYQFMDEGRLEDCKDCFRTFYSLMYLIHTYMKPHVALIDGVTMGAGAGISVLGTFC 153

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYS 190
           +AT++TVF  PE LIGFHPD G+SY+LS LPG+LGEY+GLTGATLSG EM+ CGLATHYS
Sbjct: 154 VATDRTVFGTPEALIGFHPDGGASYFLSHLPGYLGEYMGLTGATLSGAEMVACGLATHYS 213

Query: 191 LSA 193
           LSA
Sbjct: 214 LSA 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2116797	409	AT4G31810 [Arabidopsis thalian	0.938	0.447	0.595	1.6e-56
TAIR|locus:2152069	378	CHY1 "beta-hydroxyisobutyryl-C	0.969	0.5	0.518	1.5e-49
TAIR|locus:2054437	378	AT2G30660 [Arabidopsis thalian	0.943	0.486	0.516	6.7e-49
TAIR|locus:2054517	378	AT2G30650 [Arabidopsis thalian	0.943	0.486	0.5	7.9e-46
FB|FBgn0038326	386	CG5044 [Drosophila melanogaste	0.958	0.484	0.474	3.2e-42
WB|WBGene00017301	386	F09F7.4 [Caenorhabditis elegan	0.943	0.476	0.455	1.1e-41
ASPGD|ASPL0000005013	505	AN6844 [Emericella nidulans (t	0.938	0.362	0.473	1.6e-40
POMBASE|SPBC2D10.09	429	SPBC2D10.09 "3-hydroxyisobutyr	0.943	0.428	0.445	3.3e-40
RGD|1308392	385	Hibch "3-hydroxyisobutyryl-CoA	0.948	0.480	0.433	9.9e-39
UNIPROTKB|F1P188	385	HIBCH "3-hydroxyisobutyryl-CoA	0.933	0.472	0.451	1.3e-38

TAIR|locus:2116797 AT4G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 109/183 (59%), Positives = 134/183 (73%)

Query:    11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
             VLVE +A SR  ILN P  LNAL+  MV  L + YESWE N  + FV++KG+G++FC+G 
Sbjct:    43 VLVEGKAKSRAAILNNPSSLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGA 102

Query:    71 DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
             DV+  Y  + EG  EE K  F  LY FVYL  TY KP++AIMDG+TMG G GI++   +R
Sbjct:   103 DVLSLYHSINEGNTEESKLFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFR 162

Query:   131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYS 190
             +AT+KTV A PEV IGFHPD G+SYYLSRLPG+LGEYL LTG  L+G EM+ CGLATHY 
Sbjct:   163 VATDKTVLAHPEVQIGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYC 222

Query:   191 LSA 193
             L+A
Sbjct:   223 LNA 225

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 98/189 (51%), Positives = 134/189 (70%)

Query:     1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
             M ++ +SQ  VLVEE+++ R + LNRP  LNAL+  M++ L + + ++E +  V  V++K
Sbjct:     1 MAVEMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILK 60

Query:    61 GNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGG 120
             G+GR+FCAGGDV    R + +G        F + Y   Y++ATYSK  V+I++GI MGGG
Sbjct:    61 GHGRAFCAGGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGG 120

Query:   121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEM 180
             AG++VH  +R+ATE TVFAMPE  +G  PDVG+SY+LSRLPG  GEY+GLTGA L G EM
Sbjct:   121 AGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEM 180

Query:   181 LFCGLATHY 189
             L CGLATH+
Sbjct:   181 LACGLATHF 189

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IGI;IDA

GO:0006574 "valine catabolic process" evidence=NAS;IMP

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/184 (51%), Positives = 133/184 (72%)

Query:     6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
             +SQ  VLVEE+++ R + LNRP  LNAL  +M++ L + + ++E +  V  V++KG GR+
Sbjct:     2 ASQSQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRA 61

Query:    66 FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
             FCAGGDV    + + +G+     + FR  Y+  Y++ATYSKP V+I++GI MG GAG+++
Sbjct:    62 FCAGGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSI 121

Query:   126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
             H  +R+ATE TVFAMPE  +G  PDVG+SY+LSRLPG  GEY+GLTGA L G E+L CGL
Sbjct:   122 HGRFRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGL 181

Query:   186 ATHY 189
             ATH+
Sbjct:   182 ATHF 185

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 92/184 (50%), Positives = 129/184 (70%)

Query:     6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
             +S   VLVEE+++ R +  NRP  LNAL+  MV+ L + + ++E +  V  VV+KG GR+
Sbjct:     2 ASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRA 61

Query:    66 FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
             F AGGD+    R + +G++      F+  Y+  Y+++TY KP V+I++GI MGGGAG++ 
Sbjct:    62 FSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLST 121

Query:   126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
             +  +R+ATE TVFAMPE  +G  PDVG+SY+LSRLPG  GEY+GLTGA L G EML CGL
Sbjct:   122 NGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGL 181

Query:   186 ATHY 189
             ATH+
Sbjct:   182 ATHF 185

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

FB|FBgn0038326 CG5044 [Drosophila melanogaster (taxid:7227)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 92/194 (47%), Positives = 126/194 (64%)

Query:     1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
             + ++QSS   VL  E +N   +ILNRP  LNA+N  MV  + K  +  E +  +  V+IK
Sbjct:    38 LSVRQSSS-SVLATESSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSL--VIIK 94

Query:    61 GNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
             G G ++FCAGGDV     +++ G  +E K  FR  YS   L+  Y  P++AI+DGITMGG
Sbjct:    95 GTGDKAFCAGGDVRA---LVEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGG 151

Query:   120 GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEE 179
             G G++VH  YR+A+++T+FAMPE  IG  PDVG SY+L RL G LG YLGLTG  L G +
Sbjct:   152 GVGLSVHGKYRVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLGLTGYRLRGAD 211

Query:   180 MLFCGLATHYSLSA 193
             + + G+ATHY  S+
Sbjct:   212 VYYSGIATHYCESS 225

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

WB|WBGene00017301 F09F7.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 86/189 (45%), Positives = 124/189 (65%)

Query:     6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-R 64
             +++  +LV+   + + V LNRP  LNALN  MV     + ++W ++S VD V++KG+G +
Sbjct:    31 AAKSEILVDTHGSKKVVTLNRPKALNALNLEMVREFYPKLQAWNSSSDVDLVILKGSGDK 90

Query:    65 SFCAGGDVVGAYRMLKEGRV-EEC---KELFRTLYSFVYLVATYSKPHVAIMDGITMGGG 120
             +FCAGGDV+   R  K+    +EC   K+ FR  Y   +L+ T +K +V ++DGI MGGG
Sbjct:    91 AFCAGGDVLAVVRSFKDSESGKECTMHKDFFREEYILNHLIGTLNKQYVCLIDGIVMGGG 150

Query:   121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEM 180
              G++V+  +R+ATEKT+ AMPE  +G  PDVG SY+LSRL G+LG YL LTG  L G + 
Sbjct:   151 CGLSVNGRFRVATEKTMLAMPETALGLFPDVGGSYFLSRLKGNLGMYLALTGYRLLGADA 210

Query:   181 LFCGLATHY 189
                GLATH+
Sbjct:   211 FHAGLATHF 219

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

ASPGD|ASPL0000005013 AN6844 [Emericella nidulans (taxid:162425)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 89/188 (47%), Positives = 123/188 (65%)

Query:    11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
             VL       R V LNRP  LN+LN SMV  +  + + WE +   + +++ G G ++ CAG
Sbjct:    62 VLFNSLFGVRLVELNRPKKLNSLNGSMVRKILPRLKEWEKSQLANIIMVAGAGTKALCAG 121

Query:    70 GDVVG-AYRMLK--EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
             GDV   A +  K  EG+ +   + F   Y   +++ATYSKP +++MDGITMGGG G++VH
Sbjct:   122 GDVAALALQNEKGPEGQ-QASTDFFGLEYKLDHVIATYSKPFISVMDGITMGGGVGLSVH 180

Query:   127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLA 186
             A +R+ATE+TVFAMPE  IGF PDVG S++L RL G +G YL LT A L+G + L+ G+A
Sbjct:   181 APFRIATERTVFAMPETTIGFFPDVGGSFFLPRLDGEIGTYLALTSARLTGVQALYAGIA 240

Query:   187 THYSLSAV 194
             THY  S+V
Sbjct:   241 THYFDSSV 248

GO:0005739 "mitochondrion" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

POMBASE|SPBC2D10.09 SPBC2D10.09 "3-hydroxyisobutyryl-CoA hydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 82/184 (44%), Positives = 120/184 (65%)

Query:     6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
             SS   VL E +  +R   LNRP VLNA+N  M+  +  +  S E ++    +++KGNGRS
Sbjct:    53 SSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRS 112

Query:    66 FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
             F +GGD+  A   +++G++ E +  F   Y   + +ATY KP VA+M+GITMGGG+G+A+
Sbjct:   113 FSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAM 172

Query:   126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
             H  +R+A E T+FAMPE  IG+  DV +S++ SRLPG+ G YLGLT   + G + L  G+
Sbjct:   173 HVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGI 232

Query:   186 ATHY 189
             ATH+
Sbjct:   233 ATHF 236

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0009083 "branched-chain amino acid catabolic process" evidence=IC

RGD|1308392 Hibch "3-hydroxyisobutyryl-CoA hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 81/187 (43%), Positives = 118/187 (63%)

Query:     4 KQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG-N 62
             K +    VL+E R  +  + LNRP +LNAL+ +M+  +  Q + WE +     ++IKG  
Sbjct:    30 KHTETAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAG 89

Query:    63 GRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAG 122
             G++FCAGGD+       K G+    ++LFR  Y     +A+  KP+VA++DGITMGGG G
Sbjct:    90 GKAFCAGGDIKALSEAKKAGQTLS-QDLFREEYILNNAIASCQKPYVALIDGITMGGGVG 148

Query:   123 IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLF 182
             ++VH  +R+ATE+++FAMPE  IG  PDVG  Y+L RL G LG +L LTG  L G ++  
Sbjct:   149 LSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVHR 208

Query:   183 CGLATHY 189
              G+ATH+
Sbjct:   209 AGIATHF 215

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006574 "valine catabolic process" evidence=IEA

UNIPROTKB|F1P188 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 83/184 (45%), Positives = 115/184 (62%)

Query:     7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RS 65
             S   VL++++  +  + LNRP VLNAL+  M+  +  Q ++WE +     ++IKG G ++
Sbjct:    33 SAADVLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKA 92

Query:    66 FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
             FCAGGDV       K G     ++ FR  Y     + T  KP+VA++DGITMGGG G++V
Sbjct:    93 FCAGGDVRAIADAGKAGDTMT-RDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSV 151

Query:   126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
             H  +R+ATEKTVFAMPE  IG  PDVG  Y+L RL G +G  L LTG  L G ++L  G+
Sbjct:   152 HGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGI 211

Query:   186 ATHY 189
             ATH+
Sbjct:   212 ATHF 215

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	LOW CONFIDENCE prediction!
3rd Layer	3.1.2.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	2e-93
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	2e-80
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	9e-76
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	2e-72
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	8e-70
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	3e-52
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	7e-47
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	8e-28
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	7e-24
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	2e-22
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	2e-22
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	1e-21
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	5e-21
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	3e-20
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	1e-19
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	4e-18
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	5e-18
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	3e-17
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	9e-17
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	9e-17
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	1e-16
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	4e-16
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	5e-16
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	1e-15
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	2e-15
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	2e-15
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	4e-15
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	5e-15
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	3e-14
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	3e-14
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	4e-14
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	1e-13
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	1e-13
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	1e-13
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	2e-13
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	2e-13
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	5e-13
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	7e-13
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	7e-13
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	7e-13
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	1e-12
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	2e-12
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	6e-12
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	2e-11
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	3e-11
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	5e-11
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	5e-11
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	1e-10
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	1e-10
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	9e-10
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	2e-09
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	3e-09
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	6e-09
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	2e-08
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	3e-08
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	3e-08
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	6e-08
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	2e-07
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	5e-07
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	6e-07
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	8e-07
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	2e-06
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	3e-06
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	3e-06
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	5e-06
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	5e-06
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	6e-06
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	6e-06
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	1e-04
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	2e-04
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	5e-04
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	7e-04
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	8e-04
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	0.002
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	0.002
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	0.004

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  277 bits (710), Expect = 2e-93
 Identities = 119/186 (63%), Positives = 140/186 (75%)

Query: 8   QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFC 67
           Q  VLVE RA SR  ILNRP  LNAL   MVA L + YESWE N  + FV++KG+GR+FC
Sbjct: 41  QDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFC 100

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
           +G DVV  Y ++ EG VEECK  F  LY FVYL  TY KP+VAIMDGITMG GAGI++  
Sbjct: 101 SGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPG 160

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLAT 187
            +R+ T+KTVFA PEV +GFHPD G+SYYLSRLPG+LGEYL LTG  L+G EM+ CGLAT
Sbjct: 161 MFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLAT 220

Query: 188 HYSLSA 193
           HY L+A
Sbjct: 221 HYCLNA 226

Length = 407

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score =  242 bits (620), Expect = 2e-80
 Identities = 85/181 (46%), Positives = 110/181 (60%), Gaps = 1/181 (0%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCA 68
            VL E       + LNRP  LNAL+  M+  +    ++WE++  V  VVI+G G R FCA
Sbjct: 4   EVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCA 63

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           GGD+   Y   + G        FR  Y    L+A Y KP++A+MDGI MGGG GI+ H S
Sbjct: 64  GGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGS 123

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATH 188
           +R+ TE+T  AMPE  IGF PDVG +Y+LSR PG LG YL LTGA +S  + L+ GLA H
Sbjct: 124 HRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYLALTGARISAADALYAGLADH 183

Query: 189 Y 189
           +
Sbjct: 184 F 184

Length = 342

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  232 bits (593), Expect = 9e-76
 Identities = 105/180 (58%), Positives = 135/180 (75%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VLVE    SRT ILNRP  LNAL T M   L K Y++WE +  + FV++KG+GR+FCAG
Sbjct: 38  QVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAG 97

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD+V  Y + K G  +  +E F +LYSF+YL+ TY KPHVAI++G+TMGGG G+++  ++
Sbjct: 98  GDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTF 157

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           R+AT++T+FA PE +IGFHPD G+S+ LS LPG LGEYLGLTG  LSG EML CGLATHY
Sbjct: 158 RVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLACGLATHY 217

Length = 401

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  223 bits (569), Expect = 2e-72
 Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 6/181 (3%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           VL EE+   R + LNRP  LN ++ S+V+LL +  E WE +  V+ ++IKG GR+F AGG
Sbjct: 13  VLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGG 72

Query: 71  DVVGAYRMLKEGRV--EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           D+    +M  +GR   + C E+   +Y   Y + TY K  VA++ G+ MGGGAG+ V   
Sbjct: 73  DL----KMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMK 128

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATH 188
           +R+ TEKTVFA PE  +GFH D G SY LSRLPGHLGEYL LTGA L+G+EM+ CGLATH
Sbjct: 129 FRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGARLNGKEMVACGLATH 188

Query: 189 Y 189
           +
Sbjct: 189 F 189

Length = 379

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score =  216 bits (551), Expect = 8e-70
 Identities = 98/189 (51%), Positives = 134/189 (70%)

Query: 1   MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           M ++ +SQ  VLVEE+++ R + LNRP  LNAL+  M++ L + + ++E +  V  V++K
Sbjct: 1   MAVEMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILK 60

Query: 61  GNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGG 120
           G+GR+FCAGGDV    R +++G        F   Y   Y++ATYSK  V+I++GI MGGG
Sbjct: 61  GHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGG 120

Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEM 180
           AG++VH  +R+ATE TVFAMPE  +G  PDVG+SY+LSRLPG  GEY+GLTGA L G EM
Sbjct: 121 AGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEM 180

Query: 181 LFCGLATHY 189
           L CGLATH+
Sbjct: 181 LACGLATHF 189

Length = 381

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  165 bits (421), Expect = 3e-52
 Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 3/179 (1%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           VLVE      T+ LNRP   NAL+  M+  L    +  E +  V  VV+ G G++FCAG 
Sbjct: 1   VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGA 60

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           D+     +   G  EE +   R L   +  +    KP +A ++G  +GGG  +A+    R
Sbjct: 61  DLKELAALSDAG--EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIR 118

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLATH 188
           +A E   F +PEV +G  P  G +  L RL G      L LTG  +S EE L  GL   
Sbjct: 119 IAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDE 177

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  154 bits (390), Expect = 7e-47
 Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 4/181 (2%)

Query: 9   IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
             +LVE       + LNRP  LNALN  M+  L +  +  E +  V  VV+ G G++F A
Sbjct: 5   ETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSA 64

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           G D+     +L        + L +     +  +A   KP +A ++G  +GGG  +A+   
Sbjct: 65  GADLKE---LLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACD 121

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG-EYLGLTGATLSGEEMLFCGLAT 187
            R+A E   F +PEV +G  P  G +  L RL G    + L LTG  +S  E L  GL  
Sbjct: 122 IRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVD 181

Query: 188 H 188
            
Sbjct: 182 E 182

Length = 257

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  104 bits (263), Expect = 8e-28
 Identities = 58/179 (32%), Positives = 82/179 (45%), Gaps = 6/179 (3%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +LVE      T+ +NRP   NAL  +M   L    E+   +  V  VV+ G GR+F AGG
Sbjct: 7   LLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGG 66

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           D+   +        +E   + R    F+  +A   KP VA ++G  +G G  +A+     
Sbjct: 67  DI-KDFPKAPPKPPDELAPVNR----FLRAIAALPKPVVAAVNGPAVGVGVSLALACDLV 121

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLATH 188
            A+E   F++P   +G  PD G S  L RL G      + L G  LS EE L  GL   
Sbjct: 122 YASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNR 180

Length = 259

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 93.9 bits (234), Expect = 7e-24
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 24  LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR 83
           L+RP  +NAL+  ++  L +  E  E +  V  +V+ G   +F AG D+    + +    
Sbjct: 13  LDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADI----KEMAAEP 68

Query: 84  VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV 143
           + +  +           +    KP +A ++G  +GGG  +A+   YR+A +   F +PEV
Sbjct: 69  LAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEV 128

Query: 144 LIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGL 185
            +G  P  G +  L R+ G      + LTG  +  +E L  GL
Sbjct: 129 KLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGL 171

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 90.9 bits (226), Expect = 2e-22
 Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 5/178 (2%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            V+V+      T++LNRP  LNAL+  M+  L +  +     S    VV++GNGR F AG
Sbjct: 7   SVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEVAE-SSAHIVVLRGNGRGFSAG 65

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD+     ML      +   +  T+   V  + T  K  ++ + G   G G  IA+ A Y
Sbjct: 66  GDI---KMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADY 122

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLA 186
            +A      AM  + IG  PD G  ++L +  G +  + +   G  LS  E L  GL 
Sbjct: 123 VIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLI 180

Length = 260

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
           V++E+  +   V +NRP  LNALN+  +  L    +  EN+  V  V++ G G ++F AG
Sbjct: 6   VILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAG 65

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYL-VATYSKPHVAIMDGITMGGGAGIAVHAS 128
            D+      +K+   EE ++ F  L + V+  +    KP +A ++G  +GGG  +++   
Sbjct: 66  ADIS----EMKDLNEEEGRK-FGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACD 120

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
            R+A+EK  F  PEV +G  P  G +  L+R+ G    + L  TG  ++ EE L  GL
Sbjct: 121 IRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGL 178

Length = 260

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 88.8 bits (221), Expect = 1e-21
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 16/191 (8%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            + +E+R    TV LNRP V NA N +++A LT  + + + +  V  VV+ G G++FCAG
Sbjct: 5   TLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAG 64

Query: 70  GDVVGAYRM----LKEGRVEECK--ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGI 123
            D+    +M      E R +  +  ++ R +Y          KP +A + G    GG G+
Sbjct: 65  ADLNWMKKMAGYSDDENRADARRLADMLRAIYRC-------PKPVIARVHGDAYAGGMGL 117

Query: 124 AVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP-GHLGEYLGLTGATLSGEEMLF 182
                  +A +  VF + EV +G  P   S Y +  +       Y  LT       E L 
Sbjct: 118 VAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYF-LTAERFDAAEALR 176

Query: 183 CGLATHYSLSA 193
            GL  H  + A
Sbjct: 177 LGLV-HEVVPA 186

Length = 262

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 86.8 bits (215), Expect = 5e-21
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 7/169 (4%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           + VE R     V ++RP  LNALN  M      + +    +  +  V++ G GR+FC G 
Sbjct: 2   IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGA 61

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           D       L E   +   +L  T Y  +  +    K +++ ++G+T G   GIA+   ++
Sbjct: 62  D-------LSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFK 114

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEE 179
            A+    F      +G   D G +Y+L +L G     + + G   + EE
Sbjct: 115 FASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFTAEE 163

Length = 248

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 84.8 bits (210), Expect = 3e-20
 Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
           VL+E R     + LNRP  LNALN +++  L  + ++ E +  V  V++ G G R+F AG
Sbjct: 5   VLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAG 64

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGI--AVHA 127
            D+      +  G     ++  R   +    +  + KP +A ++G+  GGG  I  AVH 
Sbjct: 65  ADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHL 124

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLA 186
           +  +A+E+ +FA PE+ +G  P  G +  L RL G      L LTG   S E  L  GL 
Sbjct: 125 A--IASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLV 182

Query: 187 TH 188
             
Sbjct: 183 NA 184

Length = 260

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 1/178 (0%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           H++ E   +  T+ LNRP V N  N  M   + +     E +  V F++I  NG+ F  G
Sbjct: 3   HIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVG 62

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD+V   R + E  V+   ++   +    + +    KP +  +DG   G  A +AV A +
Sbjct: 63  GDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADF 122

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLA 186
            +A+ KT F    V +G  PD G  + L+R  G +   +L +TG  L+ E+ L  G  
Sbjct: 123 CIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFV 180

Length = 255

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 79.0 bits (195), Expect = 4e-18
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 23/184 (12%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +LV  +     + LNRP   NALN +++  L  + E+   ++ +   VI GN R F AG 
Sbjct: 4   LLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGA 63

Query: 71  D--------VVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAG 122
           D        +      L + R +  + L             ++KP +A ++G  +G G  
Sbjct: 64  DLNEMAEKDLAA---TLNDPRPQLWQRL-----------QAFNKPLIAAVNGYALGAGCE 109

Query: 123 IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEML 181
           +A+     +A E   F +PE+ +G  P  G +  L R  G  L   + LTG +++ ++  
Sbjct: 110 LALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQ 169

Query: 182 FCGL 185
             GL
Sbjct: 170 QAGL 173

Length = 255

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 18/184 (9%)

Query: 11  VLVEERANSRTVI-LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           VL+E  A+   ++ LNRP   NALN  +   L + +     +  +  +V+ G  + F AG
Sbjct: 9   VLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAG 68

Query: 70  GDV-----VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIA 124
            D+      GA  M             R    +   +A   KP +A ++G  +GGG  +A
Sbjct: 69  ADIKEFATAGAIEMYL-----------RHTERYWEAIAQCPKPVIAAVNGYALGGGCELA 117

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFC 183
           +HA   +A E   F  PE+ +G  P  G +  L R  G      + LTG  +   E L  
Sbjct: 118 MHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAI 177

Query: 184 GLAT 187
           GL +
Sbjct: 178 GLVS 181

Length = 261

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 9/180 (5%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +LVE     RT+ LNRP   NAL+ ++   L       + +  VD VV+ G   +FCAG 
Sbjct: 6   LLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGL 65

Query: 71  DVVGAYRMLKE-GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           D       LKE G           L +         KP +  ++G  + GG  +A+    
Sbjct: 66  D-------LKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDI 118

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
            +A+E+  FA     +G  P  G S  L +  G      + LTG  L   + L  GL T 
Sbjct: 119 LIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTE 178

Length = 258

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 75.5 bits (186), Expect = 9e-17
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 31/189 (16%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +LVE R     + LNRP  LNALN +++  L     +++ + G+  +VI G+ ++F AG
Sbjct: 5   TILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAG 64

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYL---------VATYSKPHVAIMDGITMGGG 120
            D+               KE+    +  VY          VA   KP +A + G  +GGG
Sbjct: 65  ADI---------------KEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGG 109

Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLS 176
             +A+     +A +   F  PE+ +G  P +G S    RL   +G+     L LTG  + 
Sbjct: 110 CELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGS---QRLTRAVGKAKAMDLCLTGRMMD 166

Query: 177 GEEMLFCGL 185
             E    GL
Sbjct: 167 AAEAERAGL 175

Length = 257

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 75.4 bits (186), Expect = 9e-17
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 21/177 (11%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
            + LN P   NAL++ ++  L++  +  E +  V  VVI G GR F AG D+       K
Sbjct: 14  VITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADI-------K 65

Query: 81  E----GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKT 136
           E       E+  EL +        V  +SKP +A + G  +GGG  +A+    R ATE  
Sbjct: 66  EFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESA 125

Query: 137 VFAMPEVLIGFHPDVGSSYYLSRLPGHLG-----EYLGLTGATLSGEEMLFCGLATH 188
              +PE+ +G  P    +    RLP ++G     E + LT   ++G E L  GL   
Sbjct: 126 KLGLPELNLGLIPGFAGT---QRLPRYVGKAKALEMM-LTSEPITGAEALKWGLVNG 178

Length = 257

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 50/177 (28%), Positives = 71/177 (40%), Gaps = 5/177 (2%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +L    A    + LNRP  LN+    M   L +  E  E +     +++ G GR FCAG 
Sbjct: 1   ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAGRGFCAGQ 59

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYS-FVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           D+  + R    G   +      T Y+  V  +     P V  ++G+  G GA +A+    
Sbjct: 60  DL--SERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDI 117

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHL-GEYLGLTGATLSGEEMLFCGL 185
            LA E   F      IG  PD G ++ L RL G      L + G  L        GL
Sbjct: 118 VLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGL 174

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 16/185 (8%)

Query: 13  VEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDV 72
           VE   +   V LNRP   NA+N +  + L + +   + +  V  VV+ G+G+ F  G D+
Sbjct: 10  VELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDL 69

Query: 73  VG----AYRMLKEG---RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
                   ++ K+G      + +     L + +  VA   KP +A + G  +GGG  +  
Sbjct: 70  PAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLIS 129

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP-----GHLGEYLGLTGATLSGEEM 180
               R A+    F++ EV +G   DVGS   L RLP     GHL E L LTG  +   E 
Sbjct: 130 ACDMRYASADAKFSVREVDLGMVADVGS---LQRLPRIIGDGHLRE-LALTGRDIDAAEA 185

Query: 181 LFCGL 185
              GL
Sbjct: 186 EKIGL 190

Length = 272

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 73.5 bits (181), Expect = 5e-16
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 3   LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62
           L    +   LV        + L+ P   NAL+  M A   +   + E +  +  VV+ G 
Sbjct: 5   LLSRREGSTLV--------LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGA 56

Query: 63  GRSFCAGGDVVGAYRMLKEGR---VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
           G  FCAGG++      L E R             L+ ++  +  + KP +A ++G   G 
Sbjct: 57  GGFFCAGGNL----NRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGA 112

Query: 120 GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR-LPGHLGEYLGLTGATLSGE 178
           G  +A+     +A     F M  V +G  PD G S++L+R LP  L   L L G  +S E
Sbjct: 113 GFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAE 172

Query: 179 EM 180
            +
Sbjct: 173 RL 174

Length = 260

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 14/173 (8%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLK 80
           + LNRP   NAL+ +++  L          + V  V++ G G ++FCAG D       LK
Sbjct: 17  ITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGAD-------LK 69

Query: 81  EGR---VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTV 137
           E      E+ +     + + + +V    +P +A ++GI +GGG  +A+   +R+A E   
Sbjct: 70  ERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESAS 129

Query: 138 FAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFCGLATH 188
             + E  +   P  G +  L RL   G   E L  TG  +S +E    GL   
Sbjct: 130 LGLTETTLAIIPGAGGTQRLPRLIGVGRAKE-LIYTGRRISAQEAKEIGLVEF 181

Length = 260

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           VL++       + +N P   NA+   M A L     + E +  V  +V+ G G++FCAG 
Sbjct: 5   VLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGA 64

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           D+      L        ++  R +Y     VA+   P +A ++G  +G G  +A+ A  R
Sbjct: 65  DLTA----LGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVR 120

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLAT 187
           +A  K +F      +G HP  G+++ L R  G  +     L G     E  +  GLA 
Sbjct: 121 IAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178

Length = 249

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 25/185 (13%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
             VE + +   V LNRP V+NAL+      L + ++ +  +      ++ G G ++F AG
Sbjct: 6   STVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAG 65

Query: 70  GDVVGAYRMLKE----GRVEECKELFRTLYS-FVYLVATYSKPHVAIMDGITMGGGAGIA 124
            D       LKE    G+    +  F  L S F        KP +A ++G+ MGGG  +A
Sbjct: 66  ND-------LKEQAAGGKRGWPESGFGGLTSRF-----DLDKPIIAAVNGVAMGGGFELA 113

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG--EYLG--LTGATLSGEEM 180
           +     +A E   FA+PE  +G     G    L RLP  +G    +G  LTG  ++  E 
Sbjct: 114 LACDLIVAAENATFALPEPRVGLAALAGG---LHRLPRQIGLKRAMGMILTGRRVTAREG 170

Query: 181 LFCGL 185
           L  G 
Sbjct: 171 LELGF 175

Length = 259

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 8/174 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +L+   A   T+ LNRP  LN+    M   L +  +  E+  G   +++ G GR FCAG
Sbjct: 5   TILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVED-DGARALLLTGAGRGFCAG 63

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYS-FVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
            D+     +   G + +  E   T Y+  V  +     P +A ++G+  G GA +A+   
Sbjct: 64  QDL-ADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACD 122

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH---LGEYLGLTGATLSGEE 179
             LA     F    V IG  PD G +++L RL G    LG  L L G  LS E+
Sbjct: 123 IVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALG--LALLGEKLSAEQ 174

Length = 262

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 70.7 bits (173), Expect = 5e-15
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 14/177 (7%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + LNRP   NAL+        K   S + N  V  +++ G G  FC+G D+     + ++
Sbjct: 21  LNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQ 80

Query: 82  ------GRV-EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATE 134
                 GR  E  +   + L   +  +    KP +A + G  +GGG  I      R  +E
Sbjct: 81  SSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSE 140

Query: 135 KTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG----EYLGLTGATLSGEEMLFCGLAT 187
              F++ EV +    D+G+   L RLP  +G      L LTG   SG E    GL +
Sbjct: 141 DAFFSVKEVDLAITADLGT---LQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194

Length = 275

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 6/183 (3%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           V V        V LNRP  +NAL+ +M   L    +  + + G+  V++ G G +FCAG 
Sbjct: 5   VSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGL 64

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSK---PHVAIMDGITMGGGAGIAVHA 127
           DV               K L         +   + +   P +A ++G+  GGG  IA+ A
Sbjct: 65  DVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGA 124

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFCGL 185
             R+A   T  ++ E   G  PD+  +  L  L       E L  T    S EE L  GL
Sbjct: 125 DIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARE-LTYTARVFSAEEALELGL 183

Query: 186 ATH 188
            TH
Sbjct: 184 VTH 186

Length = 262

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
            V L+ P V NAL+  +   L   ++       V  VV+ G G+ FCAG D+ G     +
Sbjct: 16  VVTLDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKG-----R 69

Query: 81  EGRVEECKELF---RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTV 137
              ++   +L    R      + +   +KP +A ++G  +G G G+       +A+E  V
Sbjct: 70  PDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAV 129

Query: 138 FAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEM 180
           F +PE+ +G     G   +  RL GH L   + LTG  +   E+
Sbjct: 130 FGLPEIDVGL---AGGGKHAMRLFGHSLTRRMMLTGYRVPAAEL 170

Length = 257

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 56/175 (32%), Positives = 76/175 (43%), Gaps = 8/175 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           H L E      T+ LNRP   N L     A L   +        V  VV+ G G +FC+G
Sbjct: 18  HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSG 77

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GDV      L +  + E     R     V  +    +P +A +DG+  G GA +A+ +  
Sbjct: 78  GDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDL 137

Query: 130 RLATE--KTVFAMPEV-LIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEE 179
           RL T   KT F    V L G   D+G+   L R+   G   E L  TG ++S EE
Sbjct: 138 RLGTPSAKTAFLFTRVGLAG--ADMGACALLPRIIGQGRASELL-YTGRSMSAEE 189

Length = 277

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 24  LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN-GRSFCAGGDVVGAYRMLKEG 82
           L+RP   NA+   M+  L   +E  + ++    V+++ +    FCAG D       LKE 
Sbjct: 10  LDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGAD-------LKER 62

Query: 83  R---VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFA 139
           R     E ++   +L S    +   S P +A+++G  +GGG  +A+    R+  E+ VF 
Sbjct: 63  RKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFG 122

Query: 140 MPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLATHYSLSA 193
           +PE  +   P  G +  L RL G    + L  TG  +   E    GL  +Y + A
Sbjct: 123 LPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLV-NYCVPA 176

Length = 251

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 14/158 (8%)

Query: 9   IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
           I + V+ R  + T+ LNRP   NAL+  M+A LT        ++ V  VV+ G G+SFCA
Sbjct: 6   IRIAVDARGVA-TLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCA 64

Query: 69  GGDV---VGAYRMLKEGRVEECKEL---FRTLYSFVYLVATYSKPHVAIMDGITMGGGAG 122
           GGD+          +  R+EE + L    + L           KP +  + G   GGG G
Sbjct: 65  GGDLGWMRAQMTADRATRIEEARRLAMMLKALNDL-------PKPLIGRIQGQAFGGGVG 117

Query: 123 IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL 160
           +       +A     F + E  +G  P   S Y ++R+
Sbjct: 118 LISVCDVAIAVSGARFGLTETRLGLIPATISPYVVARM 155

Length = 262

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 14/185 (7%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
           +L E+      +  N P   NA++  M   L +   + E++  +  VV+ G G ++F +G
Sbjct: 13  LLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSG 72

Query: 70  GDV--VGAYRMLKEG--RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
            D+      R   E     E+  E  +        +A Y+KP +A + G  +GGG GIA+
Sbjct: 73  ADISQFEESRSDAEAVAAYEQAVEAAQAA------LADYAKPTIACIRGYCIGGGMGIAL 126

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFC 183
               R+A E + F +P   +G          L  L  P    +    T       E L  
Sbjct: 127 ACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF-YTARRFDAAEALRI 185

Query: 184 GLATH 188
           GL   
Sbjct: 186 GLVHR 190

Length = 269

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 16/185 (8%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
           +L+E R     +  NRP   NA+  +M   L +  E+   +  +  VV++G G ++F AG
Sbjct: 10  LLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAG 69

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+   +R       E+     R +   +  +     P +A + G  +GGGA IA     
Sbjct: 70  TDI-AQFRAFSTA--EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDL 126

Query: 130 RLATEKTVFAMPEVLIGFHPDVG---SSYYLSRLPGHLG----EYLGLTGATLSGEEMLF 182
           R+AT    F  P         +G   S   L+RL   LG    + +  T   L  EE L 
Sbjct: 127 RIATPSARFGFP-----IARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALA 181

Query: 183 CGLAT 187
            GL  
Sbjct: 182 AGLVN 186

Length = 262

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 6/182 (3%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           H LVE+R ++  V +NRP   NAL+T M+ ++   ++  +N+  +   ++ G G +FCAG
Sbjct: 6   HALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAG 65

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATY--SKPHVAIMDGITMGGGAGIAVHA 127
            D+       K+   +  K+          L+     +KP +A ++G  + GG  I    
Sbjct: 66  MDLKA---ATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGT 122

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR-LPGHLGEYLGLTGATLSGEEMLFCGLA 186
             R+A E   F + E      P  GS+  L R +P  +   L LTG  ++  E    GL 
Sbjct: 123 DIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLI 182

Query: 187 TH 188
            H
Sbjct: 183 GH 184

Length = 263

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 65.5 bits (160), Expect = 5e-13
 Identities = 57/195 (29%), Positives = 79/195 (40%), Gaps = 22/195 (11%)

Query: 6   SSQIHVLVEERANSRTVI-LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR 64
            +   VL E   +   VI LNRP  LNA    M A +    +  E +  V  +V+ G GR
Sbjct: 2   MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGR 61

Query: 65  SFCAGGDVVGAYRMLKEGRVEECKEL----------FRTLYSFVYLVATYSKPHVAIMDG 114
            FCAG D +G  + +         ++          ++T Y F   +    KP +A ++G
Sbjct: 62  GFCAGAD-MGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHF---LTALRKPVIAAING 117

Query: 115 ITMGGGAGIAVHASYRLATEKTVFAMP---EVLIGFHPDVGSSYYLSRLPGHLGEY-LGL 170
              G G   A+    R A +   F        LI  H   G S+ L RL GH     L L
Sbjct: 118 ACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEH---GISWILPRLVGHANALDLLL 174

Query: 171 TGATLSGEEMLFCGL 185
           +  T   EE L  GL
Sbjct: 175 SARTFYAEEALRLGL 189

Length = 272

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 66.0 bits (161), Expect = 7e-13
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 10  HVLVEERANSRTVILNRPHV-LNALNTSMVALLTKQY-ESWENNSGVDFVVIKGNGRSFC 67
           H   E + +   V ++ P+  +N L+  + A   +   E W N +    V+I G   SF 
Sbjct: 14  HRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFV 73

Query: 68  AGGDVVGAYRMLK-EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
           AG D+    +M+      +E  +L +        +    KP VA + G  +GGG  +A+ 
Sbjct: 74  AGADI----QMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALA 129

Query: 127 ASYRLATE--KTVFAMPEVLIGFHPDVGSSYYLSRLPG 162
             YR+AT+  KT+  +PEV++G  P  G +  L +L G
Sbjct: 130 CHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 7/162 (4%)

Query: 1   MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           M    S  + ++ + R    T+ +NRP  LNAL   M+  L   ++  + +  V  +++ 
Sbjct: 2   MTQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILT 61

Query: 61  GNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGG 120
           G+GR+FC+G D+  A  + K G V++ +         V  +    KP +  ++G  +  G
Sbjct: 62  GSGRAFCSGVDLTAAEEVFK-GDVKDVE------TDPVAQMERCRKPIIGAINGFAITAG 114

Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG 162
             IA+     +A+    F       G  P  G S  LSR+ G
Sbjct: 115 FEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG 156

Length = 265

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 65.0 bits (159), Expect = 7e-13
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 31/164 (18%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDV-------- 72
           T+ LNRP  LNA   +M   L + +++ + +  V  V++ G GR+FCAG D+        
Sbjct: 16  TITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFD 75

Query: 73  ----VGAYRMLKEGRVEECKELFR------TLYSFVYLVATYSKPHVAIMDGITMGGGAG 122
                      +E R +   +  R      TL  F  L     KP +A ++G  +G GA 
Sbjct: 76  LDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSL-----KPVIAAVNGPAVGVGAT 130

Query: 123 IAVHASYRLATEKT----VFAMPEVLIGFHPDVGSSYYLSRLPG 162
           + +    RLA+       VF       G  P+  SS++L RL G
Sbjct: 131 MTLAMDIRLASTAARFGFVFGR----RGIVPEAASSWFLPRLVG 170

Length = 296

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 54/182 (29%), Positives = 75/182 (41%), Gaps = 9/182 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            V         T+ L+ PH  NAL+  +VA L     +   +  V  VV+   G +FCAG
Sbjct: 7   LVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAG 66

Query: 70  GDV---VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
            D+    G      +  V   +E+   L + V L     KP +A +DG    GG G+   
Sbjct: 67  ADLSEAGGGGGDPYDAAVARAREMTALLRAIVEL----PKPVIAAIDGHVRAGGFGLVGA 122

Query: 127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-PGHLGEYLGLTGATLSGEEMLFCGL 185
               +A  ++ FA+ E  IG  P + S   L RL P     Y  LTG      E    GL
Sbjct: 123 CDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAARYY-LTGEKFGAAEAARIGL 181

Query: 186 AT 187
            T
Sbjct: 182 VT 183

Length = 260

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 23/187 (12%)

Query: 10  HVLVEERANSRTVI---LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           H+LVE       V     NRP   NA+  +M A + K  ++ + +  +   V  G    F
Sbjct: 4   HILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCF 63

Query: 67  CAGGDV-------VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
            AG D+       +G      E            +  F+  +A   KP V+ +DG+ +G 
Sbjct: 64  SAGNDMQDFLAAAMGGTSFGSE------------ILDFLIALAEAEKPIVSGVDGLAIGI 111

Query: 120 GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLT-GATLSGE 178
           G  I +H     A+ +++F  P V +   P+ GSS    RL GH   +  L  G   S E
Sbjct: 112 GTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAE 171

Query: 179 EMLFCGL 185
                GL
Sbjct: 172 AAQEAGL 178

Length = 251

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           VLVE R     + +NRP   NA+N ++   L    +  + +  +   ++ G G +FCAG 
Sbjct: 5   VLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGM 64

Query: 71  DVVGAY---RMLKEGRVEECKELFRTLYSFVYLV-ATYSKPHVAIMDGITMGGGAGIAVH 126
           D+       R    GR             F  L      KP +A ++G  + GG  +A+ 
Sbjct: 65  DLKAFARGERPSIPGR------------GFGGLTERPPRKPLIAAVEGYALAGGFELALA 112

Query: 127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYL-SRLPGHLGEYLGLTGATLSGEE 179
               +A     F +PEV  G     G    L  R+P H+   L LTG  L+ E 
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAER 166

Length = 254

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 57/185 (30%), Positives = 78/185 (42%), Gaps = 18/185 (9%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           V  E      T+ LNRP   NALN  ++A L   +       GV  VV+ G G  FCAG 
Sbjct: 4   VSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGL 61

Query: 71  DVVGAYRMLKEGRVEECK---ELFRTL-YSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
           D+           +   +    +F  + Y  V        P +A + G  +GGG  +A  
Sbjct: 62  DLSELRERDAGEGMHHSRRWHRVFDKIQYGRV--------PVIAALHGAVVGGGLELASA 113

Query: 127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG--HLGEYLGLTGATLSGEEMLFCG 184
           A  R+A E T FA+PE   G     G S  + RL G   + + + LTG     +E    G
Sbjct: 114 AHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMM-LTGRVYDAQEGERLG 172

Query: 185 LATHY 189
           LA  Y
Sbjct: 173 LA-QY 176

Length = 255

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +L E+R    T+ LNRP   NAL+ +M+A L    ++   +  V  VV+   G++FCAG 
Sbjct: 13  LLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGH 72

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYS----FVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
           D       LKE R       FR L++     +  +    +P +A + GI     AG  + 
Sbjct: 73  D-------LKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIAT--AAGCQLV 123

Query: 127 ASYRLA--TEKTVFAMPEVLIG 146
           AS  LA   +   FA+P V IG
Sbjct: 124 ASCDLAVAADTARFAVPGVNIG 145

Length = 266

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 30  LNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECK 88
           LN L T ++  LT+       +  V  +V++G G ++F  G D+     M    +     
Sbjct: 28  LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADI---KEMATLDQ--ASA 82

Query: 89  ELFRT-LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGF 147
           E F + L      V  +  P +A + G  +GGG  +A     R+A     F MPEV +G 
Sbjct: 83  EAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI 142

Query: 148 HPDVGSSYYLSRLPGHL-GEYLGLTGATLSGEEMLFCGL 185
            P V  +  L RL G     +L LTG T+   + L  GL
Sbjct: 143 -PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGL 180

Length = 256

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 32/173 (18%)

Query: 20  RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDV------- 72
             V ++ P V NAL ++    L     +   +     VV++  GR F AG D+       
Sbjct: 13  AEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATP 71

Query: 73  -----VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
                + A R         C   FR     VY  A    P +A + G  +GGG G+  +A
Sbjct: 72  GFTALIDANR--------GCFAAFRA----VYECA---VPVIAAVHGFCLGGGIGLVGNA 116

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-PGHLGEYLGLTGATLSGEE 179
              +A++   F +PEV  G    +G++ +L RL P HL   L  T AT++  E
Sbjct: 117 DVIVASDDATFGLPEVDRG---ALGAATHLQRLVPQHLMRALFFTAATITAAE 166

Length = 249

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVV---GAYR 77
           T+ L+R    NA N  M+  L    +  ++++ + F++++G GR F AG D+     +  
Sbjct: 18  TLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSAD 77

Query: 78  MLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTV 137
           +     +++ +EL   +Y+   L      P +A++ G   GG  G+       +  +   
Sbjct: 78  LDYNTNLDDARELAELMYNLYRL----KIPTLAVVQGAAFGGALGLISCCDMAIGADDAQ 133

Query: 138 FAMPEVLIGFHPDVGSSY 155
           F + EV IG  P V S +
Sbjct: 134 FCLSEVRIGLAPAVISPF 151

Length = 265

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 4/180 (2%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENN-SGVDFVVIKGNGRSFCA 68
            V ++       + L+ P V+NA++  M+  L +  ++ E+  + V  +V+ G GR FC 
Sbjct: 5   KVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCT 64

Query: 69  GGDVVGAYRMLKEGRVEE--CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
           G ++ G     +E          L    + F+  +     P V  ++G   G G   A+ 
Sbjct: 65  GANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALM 124

Query: 127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTGATLSGEEMLFCGL 185
               L      F      IG  PD GS++ L RL G      L L G  L  E  L  GL
Sbjct: 125 GDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGL 184

Length = 266

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T+ L RP   NALN  +   L +      +      +V+ G G  FCAG D+ G      
Sbjct: 12  TIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYA-- 68

Query: 81  EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
                   +    L   ++ +     P +A ++G  +G G  +A+    R+   +  F  
Sbjct: 69  -------DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQF 121

Query: 141 PEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLA 186
           P    G   D  +   LS L G      + L    L+ E+ L  G+A
Sbjct: 122 PVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMA 168

Length = 243

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 23/181 (12%)

Query: 11  VLVEERANSRTVILNRPHVLNA----LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           V VE       V LNRP   NA    LN  M+ +L    ++ E +     +V+ G G ++
Sbjct: 10  VKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVL----DALEFDDDAGVLVLTGAGDAW 65

Query: 67  CAGGDVVGAYRMLKE--GRVEECKELF-----RTLYSFVYLVATYSKPHVAIMDGITMGG 119
            AG D       LKE     +   E+      R  Y +   +  Y KP +A+++G   GG
Sbjct: 66  SAGMD-------LKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGG 118

Query: 120 GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGE 178
           G    V     +A ++  F + E+  G  P  G S  ++   GH    Y  +TG T +G 
Sbjct: 119 GFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGR 178

Query: 179 E 179
           +
Sbjct: 179 K 179

Length = 275

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 20/150 (13%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGD--VVGAYRM 78
           + +NRP V NA     V  + +  +    +  +  V++ G G ++FC+GGD  V G Y  
Sbjct: 16  ITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY 75

Query: 79  LKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF 138
           + +  V     L          + T  KP +A+++G  +GGG  + +     +A E   F
Sbjct: 76  IDDSGVHRLNVL-----DVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARF 130

Query: 139 AMPEVLIGFHPDVGS------SYYLSRLPG 162
                     P VGS      S Y++R+ G
Sbjct: 131 GQTG------PKVGSFDGGYGSSYMARIVG 154

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 36/183 (19%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDV------- 72
            + L+RP   NA++      + + + ++ ++  +   +I G G + F AG D+       
Sbjct: 15  EITLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE 73

Query: 73  -------VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
                   G +  L E            L           KP +A ++G   GGG  +A+
Sbjct: 74  APDADFGPGGFAGLTE---------IFDL----------DKPVIAAVNGYAFGGGFELAL 114

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYL-SRLPGHLGEYLGLTGATLSGEEMLFCG 184
            A + +  +   FA+PE  +G  PD G    L  RLP  +   + +TG  +  EE L  G
Sbjct: 115 AADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWG 174

Query: 185 LAT 187
           +  
Sbjct: 175 IVN 177

Length = 261

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDV---VGAYRM 78
           +  + P  +N  + + +A L +  ++ +  S +  V++     +F  G D+   +G + +
Sbjct: 20  LKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFAL 79

Query: 79  LKE---GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK 135
                   +     +F  L            P VA ++GI +GGG    +   +R+A + 
Sbjct: 80  PDAELIQWLLFANSIFNKLEDLPV-------PTVAAINGIALGGGCECVLATDFRIADDT 132

Query: 136 TVFAMPEVLIGFHPDVGSSYYLSRLPG 162
               +PE  +G  P  G +  L R+ G
Sbjct: 133 AKIGLPETKLGIMPGFGGTVRLPRVIG 159

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 47/211 (22%), Positives = 71/211 (33%), Gaps = 49/211 (23%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +  E       + LNRP   NA+       L    E  + + GV  +++ G G+ FCAG
Sbjct: 11  TMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAG 70

Query: 70  GDVVGAYRMLKEGRVEECKELFRT------------------LYSFVYLVATY---SKPH 108
            D+         G         R                   +  FV    +     KP 
Sbjct: 71  YDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPT 130

Query: 109 VAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG------ 162
           VA + G  + GG  IA+H    +A +          IG+ P        +R+ G      
Sbjct: 131 VAKVHGYCVAGGTDIALHCDQVIAADDA-------KIGYPP--------TRVWGVPATGM 175

Query: 163 ---HLG----EYLGLTGATLSGEEMLFCGLA 186
               LG    + L  TG  ++G +    GLA
Sbjct: 176 WAYRLGPQRAKRLLFTGDCITGAQAAEWGLA 206

Length = 302

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 25/176 (14%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYR--- 77
           T+ LNRP  LN +   M   +       E +  +  +V++G GR+F  G D  G ++   
Sbjct: 17  TITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWG 76

Query: 78  --MLKEGRVEECKELFRTLYSFVYLVAT-----------YSKPHVAIMDGITMGGGAGIA 124
             M+ +GR +  K+     ++ V    T            SKP +A + G  +GG +  A
Sbjct: 77  EAMMTDGRWDPGKD-----FAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYA 131

Query: 125 VHASYRLATEKTVFAMP-EVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEE 179
           + A   +A++  V   P   + G +    +  +L RL     ++  LTG  L+G +
Sbjct: 132 LCADIVIASDDAVIGTPYSRMWGAYL---TGMWLYRLSLAKVKWHSLTGRPLTGVQ 184

Length = 298

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 57  VVIKGNGRSFCAGGDVVGAYRMLKEGR-VEECKELFRTLYSFVYLVATYSKPHVAIMDGI 115
           V I G   +F AG D+     ML   +  +E + L R        +     P VA + G 
Sbjct: 56  VFISGKPDNFIAGADI----NMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGA 111

Query: 116 TMGGGAGIAVHASYRLAT--EKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTG 172
            +GGG  +A+   YR+ T   KTV  +PEV +G  P  G +  L RL G      + LTG
Sbjct: 112 CLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTG 171

Query: 173 ATL 175
             L
Sbjct: 172 KQL 174

Length = 708

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 19/187 (10%)

Query: 11  VLVEERANSRTVILNRPHVLNALN-TSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           +LVE   +  T+ +NRP   NAL+    V  L     +   +  V  V++ G G +F +G
Sbjct: 5   LLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSG 64

Query: 70  GDV----------VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
           G+V           G+   +++G     + +   LY+          P +A ++G  +G 
Sbjct: 65  GNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNL-------EVPVIAAVNGPAIGA 117

Query: 120 GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTGATLSGE 178
           G  +A     R+A+E   FA   V +G  P  G ++ L R+ G      +  TG  +   
Sbjct: 118 GCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAA 177

Query: 179 EMLFCGL 185
             L  GL
Sbjct: 178 TALEWGL 184

Length = 266

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 17/151 (11%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG---RSFCAGGDVVGAYRM 78
           + +NRP V NA     V  +   +    ++  V  +++ GNG   ++FC+GGD     R 
Sbjct: 32  ITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGD--QKVRG 89

Query: 79  LKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF 138
              G V++       +     L+ T  KP +A++ G  +GGG  + V     +A +  +F
Sbjct: 90  DSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIF 149

Query: 139 AMPEVLIGFHPDVGS------SYYLSRLPGH 163
                     P VGS      S YL+R+ G 
Sbjct: 150 GQTG------PKVGSFDGGYGSSYLARIVGQ 174

Length = 282

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK- 80
           ++LN P  LNA +  M   L   +   + +  V  V+I+G G++F AGGD+     M   
Sbjct: 25  IVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADD 84

Query: 81  -EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
            E R    +E  R L   VY V    KP V+ + G  +  GAG+  
Sbjct: 85  FEVRARVWREA-RDL---VYNVINCDKPIVSAIHGPAV--GAGLVA 124

Length = 268

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 2/137 (1%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLK 80
           +IL+ P   N+  T MV  +   +    ++  V  VV    G ++FC GG+    Y    
Sbjct: 41  IILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNT-KEYAEYY 99

Query: 81  EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
            G  +E ++  R     V  +    KP +  ++G+ +GGG  I + A + +A +   F  
Sbjct: 100 AGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQ 159

Query: 141 PEVLIGFHPDVGSSYYL 157
                G  P  G++ +L
Sbjct: 160 AGPKHGSAPIGGATDFL 176

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 18/189 (9%)

Query: 11  VLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           VLV+  R     + LNRP  +N++   ++  L +       ++ V  VV+ G GR F +G
Sbjct: 11  VLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSG 70

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSF---------VYLVATYSKPHVAIMDGITMGGG 120
            D   A      G V   + L R  Y+          +  +    +P +A ++G  +GGG
Sbjct: 71  ADHKSA------GVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGG 124

Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFH-PDVGSSYYLSRLPGHLGEY-LGLTGATLSGE 178
             +A+ A  R+A+    F    +  G    ++G SY L R  G    + + LTG  +  E
Sbjct: 125 LCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAE 184

Query: 179 EMLFCGLAT 187
           E    GL +
Sbjct: 185 EAERIGLVS 193

Length = 276

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 4/179 (2%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           + V ++ +   + L+RP   N +N  ++A      +  E+ + +  VV++G    FC G 
Sbjct: 6   IRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHAATI--VVLEGLPEVFCFGA 63

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           D          GR +        LY   + +AT     +A + G    GG G    +   
Sbjct: 64  DFSAIAEKPDAGRADLIDA--EPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIV 121

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           +A E   F++ E+L G  P     + + R+      Y+ L    ++ ++    GL   Y
Sbjct: 122 IADETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAY 180

Length = 255

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 20/160 (12%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
           +L E+R     +++NRP  +NA        L    +    +  +  +V+ G G ++FC G
Sbjct: 4   ILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTG 63

Query: 70  GDVVGAYRMLKEGR------VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGI 123
           GD    +    +GR      +EE     R +           KP +A + G  +GGG  +
Sbjct: 64  GDQ-STHDGGYDGRGTIGLPMEELHSAIRDV----------PKPVIARVQGYAIGGGNVL 112

Query: 124 AVHASYRLATEKTVFAMPEVLIG-FHPDVGSSYYLSRLPG 162
                  +A+EK  F      +G   P  G++  L+R+ G
Sbjct: 113 VTICDLTIASEKAQFGQVGPKVGSVDPGYGTA-LLARVVG 151

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 57  VVIKGNGRSFCAGGDVVGAYRMLKEGRV-EECKELFRTLYSFVYLVATYSKPHVAIMDGI 115
           V++ G   +F AG D+     ML   +   E K L +        +     P VA + G 
Sbjct: 51  VLVSGKPDNFIAGADI----SMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGA 106

Query: 116 TMGGGAGIAVHASYRLATE--KTVFAMPEVLIGFHPDVGSSYYLSRLPG 162
            +GGG  +A+    R+ ++  KTV  +PEV +G  P  G +  L RL G
Sbjct: 107 CLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIG 155

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 24  LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR 83
           L RP   N ++ +M+A L+        +S +  V++   G  F  G  V        E  
Sbjct: 16  LARPKA-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASV-------AEHM 67

Query: 84  VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV 143
            ++C  +  +L+  V  +     P +  + G  +GGG  +A   +   A        PE+
Sbjct: 68  PDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEI 127

Query: 144 LIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLAT 187
           ++G      S     R+     E L  +G ++ G E    GLA 
Sbjct: 128 VLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLAN 171

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           V VE      TVILNRP V NA++    A L   + +++ +      V+ G G +FCAG
Sbjct: 4  SVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAG 63

Query: 70 GD 71
           D
Sbjct: 64 AD 65

Length = 254

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T++L+RP   NAL   +   +            V  V++ G    F AG D+      L+
Sbjct: 20  TLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDM----PELR 74

Query: 81  EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
               +E     R     V  VA   KP VA + G  +G G  +A+ A +R++ +   F  
Sbjct: 75  TLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGA 134

Query: 141 PEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
            E+L G  P       L+R  G    + L  +G     EE L  GL
Sbjct: 135 TEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGL 180

Length = 222

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 28/62 (45%)

Query: 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
          +V  E       + LNRP   NA N  M+  L   +   E +  V  +V+ G G+ F AG
Sbjct: 5  YVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAG 64

Query: 70 GD 71
           D
Sbjct: 65 HD 66

Length = 288

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 36/192 (18%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           V  E R +   + L+RP   NA +++M+  L      +E +  +   V+  +G  F AG 
Sbjct: 1   VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGL 60

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVAT------------YSKPHVAIMDGITMG 118
           D+                ++   L +  +                 SKP V  + G  + 
Sbjct: 61  DLA---------------DVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLT 105

Query: 119 GGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG-----EYLGLTGA 173
            G  + + A   +A + T FA  EV  G  P  G++    R P   G      YL LTG 
Sbjct: 106 LGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATL---RFPQAAGWGNAMRYL-LTGD 161

Query: 174 TLSGEEMLFCGL 185
               +E L  GL
Sbjct: 162 EFDAQEALRLGL 173

Length = 255

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 31  NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG--RVEECK 88
           NA +  +   L + +++   +     V++ G    F  GG         +EG   ++  K
Sbjct: 27  NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGT--------QEGLLSLQTGK 78

Query: 89  ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFH 148
             F    +   L      P +A M G  +GGG  + ++A   + + ++V+    +  GF 
Sbjct: 79  GTFTEA-NLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFT 137

Query: 149 PDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEM 180
           P +G++  L    G  LG+ + LT     G E+
Sbjct: 138 PGMGATAILPEKLGLALGQEMLLTARYYRGAEL 170

Length = 249

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 107 PHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG 162
           P VA ++G  +GGG    +   YR+A+      +PE  +G  P  G +  L RL G
Sbjct: 104 PTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159

Length = 715

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 45/176 (25%), Positives = 63/176 (35%), Gaps = 53/176 (30%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS-------FCAGGD--- 71
           +  +RP V NA     V  L +  +    +  V  V++ GNG S       FC+GGD   
Sbjct: 38  IAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRI 97

Query: 72  ---------------VVGAYRMLKEGRVE--ECKELFRTLYSFVYLVATYSKPHVAIMDG 114
                           V   R    GR+   E + L R +           K  +A++ G
Sbjct: 98  RGRDGYQYAEGDEADTVDPARA---GRLHILEVQRLIRFM----------PKVVIAVVPG 144

Query: 115 ITMGGGAGIAVHASYRLAT-EKTVFAMPEVLIGFHPDVGS------SYYLSRLPGH 163
              GGG  + V     LA+ E   F   +       DVGS      S YL+R  G 
Sbjct: 145 WAAGGGHSLHVVCDLTLASREHARFKQTD------ADVGSFDGGYGSAYLARQVGQ 194

Length = 302

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 32/156 (20%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGD--------V 72
           + +NRP   NA     V  L + +    ++S V  +++ G G ++FC+GGD         
Sbjct: 80  ITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGY 139

Query: 73  VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLA 132
           VG     +   V + +   R L           KP +A++ G  +GGG  + +     +A
Sbjct: 140 VGPDDAGRL-NVLDLQIQIRRL----------PKPVIAMVAGYAVGGGHILHMVCDLTIA 188

Query: 133 TEKTVFAMPEVLIGFHPDVGS------SYYLSRLPG 162
            +  VF       G  P VGS      S  ++RL G
Sbjct: 189 ADNAVFGQ----TG--PKVGSFDAGYGSSIMARLVG 218

Length = 327

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 20/151 (13%)

Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGD--VVGAYRM 78
           + +NRP V NA     V  +   +    ++  +  +++ G G ++FC+GGD  V G    
Sbjct: 26  ITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGY 85

Query: 79  LKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF 138
           + +  V     L         L+ T  KP +A++ G  +GGG  + +     +A +  +F
Sbjct: 86  VDDDGVPRLNVL-----DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIF 140

Query: 139 AMPEVLIGFHPDVGS------SYYLSRLPGH 163
                  G  P VGS      + YL+R+ G 
Sbjct: 141 GQ----TG--PKVGSFDGGYGASYLARIVGQ 165

Length = 273

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 7   SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RS 65
             I + +E   +   + LN P   N      +  L +       +  V  +VI G+G + 
Sbjct: 1   MMIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKF 59

Query: 66  FCAG--------GDVVGAYRMLKE-GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGIT 116
           F AG        GD   A  M +  G      E F  L +F  +        +A ++G  
Sbjct: 60  FSAGADLNLFADGDKAVAREMARRFG------EAFEALSAFRGVS-------IAAINGYA 106

Query: 117 MGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG 162
           MGGG   A+    R+A E+   A+PE  +G  P  G +  L  L G
Sbjct: 107 MGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVG 152

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.87
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.86
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.73
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.69
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.64
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.61
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.61
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.59
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.53
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.51
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.41
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.16
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	99.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.94
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.88
PRK10949	618	protease 4; Provisional	98.87
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.87
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.84
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.81
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.79
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.74
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.72
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.71
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.71
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.71
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.65
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.61
PRK11778	330	putative inner membrane peptidase; Provisional	98.59
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.58
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.53
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.5
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	98.44
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	98.4
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	98.39
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	98.38
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	98.3
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	98.25
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	98.15
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	98.07
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	98.04
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.98
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.98
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.93
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.9
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.83
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.74
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	97.63
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.62
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	97.57
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.42
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	97.4
PRK10949	618	protease 4; Provisional	96.86
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	95.9
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.86
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	95.23
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.0
KOG0540	536	consensus 3-Methylcrotonyl-CoA carboxylase, non-bi	84.76
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	82.63
smart00250	38	PLEC Plectin repeat.	81.42

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=7.4e-50  Score=322.39  Aligned_cols=194  Identities=24%  Similarity=0.326  Sum_probs=172.3

Q ss_pred             CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh
Q 041986            1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK   80 (195)
Q Consensus         1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~   80 (195)
                      |+|... |+++.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.....
T Consensus         1 ~~~~~~-~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~   79 (275)
T PRK09120          1 MSYENR-WDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETD   79 (275)
T ss_pred             CCcccc-cccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccc
Confidence            566555 8889999999999999999999999999999999999999999999999999999999999999998753221


Q ss_pred             cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986           81 EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL  160 (195)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~  160 (195)
                      ...........+....++.++..+||||||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  159 (275)
T PRK09120         80 AQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADT  159 (275)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHH
Confidence            11111112233345567888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +| ..+++++++|++++|+||+++|||++|||++++
T Consensus       160 iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l  195 (275)
T PRK09120        160 VGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQL  195 (275)
T ss_pred             cCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHH
Confidence            99 899999999999999999999999999998764

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.7e-49  Score=314.46  Aligned_cols=187  Identities=30%  Similarity=0.464  Sum_probs=167.8

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      +.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++............
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK05980          3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL   82 (260)
T ss_pred             ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence            3688999999999999999999999999999999999999999999999999999 799999999987542211111122


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                      ..+.+...+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (260)
T PRK05980         83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL  162 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence            344455567888899999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++||||++||++++
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  191 (260)
T PRK05980        163 ELLLTGDAFSAERALEIGLVNAVVPHEEL  191 (260)
T ss_pred             HHHHcCCccCHHHHHHcCCCCcccCHHHH
Confidence            99999999999999999999999998753

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-48  Score=314.23  Aligned_cols=188  Identities=26%  Similarity=0.333  Sum_probs=168.9

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh------
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK------   80 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~------   80 (195)
                      .++.+.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.....      
T Consensus         4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   83 (272)
T PRK06142          4 TYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDG   83 (272)
T ss_pred             CcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999998754211      


Q ss_pred             -cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986           81 -EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR  159 (195)
Q Consensus        81 -~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r  159 (195)
                       .............+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~  163 (272)
T PRK06142         84 LARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPR  163 (272)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHH
Confidence             0111223334455677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cch-HHHHHHhhcCCCCCHHHHHhcCccccccCC-CC
Q 041986          160 LPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLS-AV  194 (195)
Q Consensus       160 ~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~-~~  194 (195)
                      ++| ..+.+++++|++++|+||+++||||++||+ ++
T Consensus       164 ~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~  200 (272)
T PRK06142        164 IIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADA  200 (272)
T ss_pred             HhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHH
Confidence            999 999999999999999999999999999985 54

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-48  Score=311.02  Aligned_cols=188  Identities=29%  Similarity=0.456  Sum_probs=169.3

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      ++++.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++............
T Consensus         1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   80 (255)
T PRK07260          1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL   80 (255)
T ss_pred             CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence            35688999999999999999999999999999999999999999999999999999999999999987643222222222


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                      ..+.+..++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~  160 (255)
T PRK07260         81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT  160 (255)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence            334455667888999999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++||||+++|++++
T Consensus       161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l  189 (255)
T PRK07260        161 HLAMTGEALTAEKALEYGFVYRVAESEKL  189 (255)
T ss_pred             HHHHhCCccCHHHHHHcCCcceecCHhHH
Confidence            99999999999999999999999998753

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-48  Score=311.17  Aligned_cols=188  Identities=27%  Similarity=0.382  Sum_probs=165.4

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      +++.+.++++++|++||||||++.|++|.+++.+|.+++++++ |+++++|||+|.|+.||+|.|++++...........
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (262)
T PRK08140          2 MYETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDL   80 (262)
T ss_pred             CCceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhh
Confidence            3557899999999999999999999999999999999999999 999999999999999999999998743211111111


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ...+...+..++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a  160 (262)
T PRK08140         81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARA  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHH
Confidence            1122223445778899999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++++|++++|+||+++||||+|||++++
T Consensus       161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  190 (262)
T PRK08140        161 LGLALLGEKLSAEQAEQWGLIWRVVDDAAL  190 (262)
T ss_pred             HHHHHcCCCcCHHHHHHcCCccEeeChHHH
Confidence            999999999999999999999999998753

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=4.1e-49  Score=306.95  Aligned_cols=182  Identities=28%  Similarity=0.431  Sum_probs=161.4

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ........++++|+.|+||||+++|+++..++.||.++|..++.|++++++||||.|+.||+|.|++++......+-.. 
T Consensus        35 ~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~-  113 (290)
T KOG1680|consen   35 PIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD-  113 (290)
T ss_pred             cceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc-
Confidence            3345566678899999999999999999999999999999999999999999999999999999999987532211110 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                        .   .+.+.+..+.+.+||+||++||+|+|||+||+++||+||+++++.|++|+.++|++|.+|++.+|+|++| ++|
T Consensus       114 --~---~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~A  188 (290)
T KOG1680|consen  114 --G---IFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRA  188 (290)
T ss_pred             --c---cccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHH
Confidence              0   1222333445899999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++++|++++|+||+++||||+|||.++
T Consensus       189 le~~ltg~~~~AqeA~~~GlVn~Vvp~~~  217 (290)
T KOG1680|consen  189 LEMILTGRRLGAQEAKKIGLVNKVVPSGD  217 (290)
T ss_pred             HHHHHhcCcccHHHHHhCCceeEeecchh
Confidence            99999999999999999999999999886

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.5e-48  Score=309.51  Aligned_cols=182  Identities=27%  Similarity=0.420  Sum_probs=164.4

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      ++.+.++++++|++||||||++.|++|.+++++|.+++++++.|+++|+|||+|.|+.||+|.|++++.....   .+  
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~--   77 (257)
T PRK05862          3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---MD--   77 (257)
T ss_pred             CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---hH--
Confidence            4568999999999999999999999999999999999999999999999999999999999999998753211   11  


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                       .+...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++.
T Consensus        78 -~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T PRK05862         78 -VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM  156 (257)
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence             11223344677889999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++||||+++|++++
T Consensus       157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  185 (257)
T PRK05862        157 DLCLTGRMMDAAEAERAGLVSRVVPADKL  185 (257)
T ss_pred             HHHHhCCccCHHHHHHcCCCCEeeCHhHH
Confidence            99999999999999999999999998753

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.1e-48  Score=310.34  Aligned_cols=188  Identities=23%  Similarity=0.309  Sum_probs=168.9

Q ss_pred             CCcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            6 SSQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         6 ~~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      .+++.|.+++ +++|++|+||||++.|++|.+++.+|.++|++++.|+++++|||||.|+.||+|.|++++.....  ..
T Consensus         8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~   85 (268)
T PRK07327          8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMAD--DF   85 (268)
T ss_pred             CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccC--cH
Confidence            4677899998 58999999999999999999999999999999999999999999999999999999998754221  11


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      ...........+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| .
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  165 (268)
T PRK07327         86 EVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMA  165 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHH
Confidence            122233445567888899999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+++|++++
T Consensus       166 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l  197 (268)
T PRK07327        166 KAKYYLLLCEPVSGEEAERIGLVSLAVDDDEL  197 (268)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence            99999999999999999999999999998753

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-48  Score=308.58  Aligned_cols=181  Identities=30%  Similarity=0.335  Sum_probs=164.2

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.|.++++++|++|+||||++.|++|.+++.+|.++++.++  +++++|||||.|+.||+|.|++++.....    ....
T Consensus         2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~----~~~~   75 (255)
T PRK08150          2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA----GEGM   75 (255)
T ss_pred             ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc----hhHH
Confidence            46889999999999999999999999999999999999997  78999999999999999999998754211    1112


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .....+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+++
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~  155 (255)
T PRK08150         76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD  155 (255)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            33445667888899999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||++||++++
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l  183 (255)
T PRK08150        156 MMLTGRVYDAQEGERLGLAQYLVPAGEA  183 (255)
T ss_pred             HHHcCCcCCHHHHHHcCCccEeeCchHH
Confidence            9999999999999999999999998763

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.6e-48  Score=309.50  Aligned_cols=189  Identities=25%  Similarity=0.365  Sum_probs=163.7

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +.++.+.++++++|++||||||++.|++|.+++++|.++++.++.|+++++|||||.|+.||+|.|++++..........
T Consensus         2 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (263)
T PRK07799          2 EGGPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFK   81 (263)
T ss_pred             CCCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhh
Confidence            34567999999999999999999999999999999999999999999999999999999999999999876432111110


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ........+..+ .++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  160 (263)
T PRK07799         82 DGSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV  160 (263)
T ss_pred             hhhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence            000001122223 3467899999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||++||++++
T Consensus       161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l  191 (263)
T PRK07799        161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQA  191 (263)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCccEecCcchH
Confidence            9999999999999999999999999998763

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.9e-48  Score=311.05  Aligned_cols=185  Identities=28%  Similarity=0.352  Sum_probs=166.3

Q ss_pred             eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHH
Q 041986           10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE   89 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (195)
                      .+.++++++|++|+||+|++.|+++.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.......+......
T Consensus        18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   97 (277)
T PRK08258         18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA   97 (277)
T ss_pred             ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999998743211112222334


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccC-CCchhhHhhhcch-HHHHH
Q 041986           90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHP-DVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p-~~g~~~~l~r~~g-~~a~~  167 (195)
                      +.+.+.++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++++|++| ..+++
T Consensus        98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~  177 (277)
T PRK08258         98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE  177 (277)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence            445566788899999999999999999999999999999999999999999999999995 7788999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++|++++|+||+++||||++||+++
T Consensus       178 l~ltg~~~~a~eA~~~Glv~~vv~~~~  204 (277)
T PRK08258        178 LLYTGRSMSAEEGERWGFFNRLVEPEE  204 (277)
T ss_pred             HHHcCCCCCHHHHHHcCCCcEecCHHH
Confidence            999999999999999999999999875

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-47  Score=307.46  Aligned_cols=182  Identities=24%  Similarity=0.330  Sum_probs=164.9

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      ..+.++++++|++||||||++ |++|.+++.+|.++++.++.|+++++|||+|.| +.||+|.|++++.....    ...
T Consensus         3 ~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~----~~~   77 (258)
T PRK09076          3 IELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK----AVA   77 (258)
T ss_pred             eEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh----hhH
Confidence            468899999999999999985 999999999999999999999999999999999 78999999998753211    111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                      ..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..++
T Consensus        78 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~  157 (258)
T PRK09076         78 REMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAK  157 (258)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence            233445567888899999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++||||+|||++++
T Consensus       158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  186 (258)
T PRK09076        158 RMILCGERVDAATALRIGLVEEVVEKGEA  186 (258)
T ss_pred             HHHHcCCcCCHHHHHHCCCCceecCchhH
Confidence            99999999999999999999999998753

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.8e-48  Score=308.16  Aligned_cols=183  Identities=26%  Similarity=0.331  Sum_probs=166.4

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.+.++++++|++|+||||++.|++|.+++++|.++++.++.|+++++|||||.|+.||+|.|++++.....+  .. 
T Consensus         2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~--~~-   78 (258)
T PRK06190          2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSA--YG-   78 (258)
T ss_pred             CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch--hh-
Confidence            456799999999999999999999999999999999999999999999999999999999999999987542111  11 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                        . .....+++.++.++|||+||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|++| ..+
T Consensus        79 --~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  155 (258)
T PRK06190         79 --A-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA  155 (258)
T ss_pred             --H-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence              1 234456788899999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+++|++++
T Consensus       156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  185 (258)
T PRK06190        156 RRMSLTGDFLDAADALRAGLVTEVVPHDEL  185 (258)
T ss_pred             HHHHHhCCccCHHHHHHcCCCeEecCHhHH
Confidence            999999999999999999999999998753

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=308.38  Aligned_cols=193  Identities=24%  Similarity=0.356  Sum_probs=171.6

Q ss_pred             CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhh
Q 041986            1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRML   79 (195)
Q Consensus         1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~   79 (195)
                      |+.-.+..+.|.++++++|++|+||||++.|++|.+++++|.++++.++.|+++++|||+|.| +.||+|.|++++....
T Consensus         3 ~~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~   82 (269)
T PRK06127          3 MSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR   82 (269)
T ss_pred             ccccCCCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc
Confidence            344445667899999999999999999999999999999999999999999999999999998 7999999999875421


Q ss_pred             hcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986           80 KEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR  159 (195)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r  159 (195)
                      ..  ......+......++.++..+||||||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|
T Consensus        83 ~~--~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~  160 (269)
T PRK06127         83 SD--AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVD  160 (269)
T ss_pred             cc--hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHH
Confidence            11  1112234445566788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          160 LPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       160 ~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++| .++.+++++|++++|+||+++||||+|||++++
T Consensus       161 ~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l  197 (269)
T PRK06127        161 LVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDL  197 (269)
T ss_pred             HhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHH
Confidence            999 899999999999999999999999999998753

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.5e-48  Score=308.46  Aligned_cols=186  Identities=28%  Similarity=0.421  Sum_probs=164.1

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      +++.+.++++++|++||||+|++.|++|.+++++|.++++.++.|+++|+|||||.|+.||+|.|++++......... .
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-~   80 (262)
T PRK05995          2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD-E   80 (262)
T ss_pred             CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch-h
Confidence            356799999999999999999999999999999999999999999999999999999999999999987542211111 1


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      .......+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. ++++++| ..+
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a  159 (262)
T PRK05995         81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAA  159 (262)
T ss_pred             hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHH
Confidence            11223445678888999999999999999999999999999999999999999999999999988765 4789999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+++++|++++|+||+++||||++||+++
T Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  188 (262)
T PRK05995        160 RRYFLTAERFDAAEALRLGLVHEVVPAEA  188 (262)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCeecCHHH
Confidence            99999999999999999999999999765

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=9.6e-48  Score=307.23  Aligned_cols=180  Identities=26%  Similarity=0.416  Sum_probs=164.1

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++.....   .   .
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~---~   75 (255)
T PRK09674          2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A---A   75 (255)
T ss_pred             ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h---h
Confidence            467889999999999999999999999999999999999999999999999999999999999998753211   1   1


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .+.....++++++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++.+
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~  155 (255)
T PRK09674         76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ  155 (255)
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            12233456778899999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++|++++|+||+++||||++||+++
T Consensus       156 l~l~g~~~~a~eA~~~Glv~~vv~~~~  182 (255)
T PRK09674        156 MVLTGESITAQQAQQAGLVSEVFPPEL  182 (255)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHH
Confidence            999999999999999999999999875

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=6.3e-48  Score=309.74  Aligned_cols=188  Identities=22%  Similarity=0.337  Sum_probs=164.1

Q ss_pred             CCcceEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            6 SSQIHVLVEER-ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         6 ~~~~~v~~~~~-~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      ++|+++.++++ ++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++...... +.
T Consensus         2 ~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~   80 (265)
T PRK05674          2 SDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADL-DY   80 (265)
T ss_pred             CCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccc-cc
Confidence            35778999985 78999999999999999999999999999999999999999999999999999999987532111 11


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      ....+....+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. ++++++| .
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~  159 (265)
T PRK05674         81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGER  159 (265)
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHH
Confidence            1111222345567888999999999999999999999999999999999999999999999999987665 4888899 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++++++|++++|+||+++|||++|||++++
T Consensus       160 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l  191 (265)
T PRK05674        160 AARRYALTAERFDGRRARELGLLAESYPAAEL  191 (265)
T ss_pred             HHHHHHHhCcccCHHHHHHCCCcceecCHHHH
Confidence            99999999999999999999999999997653

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=9.1e-48  Score=307.46  Aligned_cols=183  Identities=20%  Similarity=0.274  Sum_probs=164.0

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      |++|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++.... + ..  
T Consensus         1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~-~-~~--   76 (256)
T TIGR03210         1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGY-D-GR--   76 (256)
T ss_pred             CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccc-c-ch--
Confidence            45688999999999999999999999999999999999999999999999999999 7999999999874211 1 11  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                       ..+......++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++++|++| .++
T Consensus        77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A  155 (256)
T TIGR03210        77 -GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA  155 (256)
T ss_pred             -hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence             112233456788899999999999999999999999999999999999999999999999988888899999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++++|++++|+||+++||||++||++++
T Consensus       156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l  185 (256)
T TIGR03210       156 REIWYLCRRYTAQEALAMGLVNAVVPHDQL  185 (256)
T ss_pred             HHHHHhCCCcCHHHHHHcCCceeeeCHHHH
Confidence            999999999999999999999999998753

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=1.9e-47  Score=306.34  Aligned_cols=184  Identities=29%  Similarity=0.453  Sum_probs=167.3

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ++..+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++....    ..
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~----~~   77 (260)
T PRK05809          2 ELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLN----EE   77 (260)
T ss_pred             CcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccC----hH
Confidence            456789999999999999999999999999999999999999999999999999999 9999999999875421    11


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ....+.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  157 (260)
T PRK05809         78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK  157 (260)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            12233344566888999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +.+++++|++++|+||+++||||+++|+++
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  187 (260)
T PRK05809        158 AKELIYTGDMINAEEALRIGLVNKVVEPEK  187 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCcccChHH
Confidence            999999999999999999999999999875

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=307.37  Aligned_cols=186  Identities=26%  Similarity=0.343  Sum_probs=167.4

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ..+.+.++++++|++|+||||++.|++|.+++++|.+++++++.|+++++|||||.| ++||+|.|++++......   +
T Consensus         6 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~---~   82 (262)
T PRK06144          6 STDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTA---E   82 (262)
T ss_pred             CCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccch---h
Confidence            345688999999999999999999999999999999999999999999999999999 799999999987542111   1


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCccc-ccccCCCchhhHhhhcch-H
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVL-IGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~-~G~~p~~g~~~~l~r~~g-~  163 (195)
                      ....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||++ +|++|++|+++++++++| .
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~  162 (262)
T PRK06144         83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA  162 (262)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence            12234445667888899999999999999999999999999999999999999999996 999999999999999999 8


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+.+++++|++++|+||+++||||+|+|++++
T Consensus       163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  194 (262)
T PRK06144        163 RVKDMLFTARLLEAEEALAAGLVNEVVEDAAL  194 (262)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCcCeecCHHHH
Confidence            99999999999999999999999999998753

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-47  Score=306.91  Aligned_cols=183  Identities=28%  Similarity=0.407  Sum_probs=165.8

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +++.++++++|++||||+|++ |++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++......   ....
T Consensus         2 ~~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~---~~~~   77 (257)
T PRK07658          2 KFLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEA---EQAT   77 (257)
T ss_pred             ceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCch---hhHH
Confidence            378899999999999999985 999999999999999999999999999999999999999999987532211   1122


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .+......+++++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++.+
T Consensus        78 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T PRK07658         78 ELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALE  157 (257)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHH
Confidence            34455667888999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||++||++++
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l  185 (257)
T PRK07658        158 MMLTSEPITGAEALKWGLVNGVFPEETL  185 (257)
T ss_pred             HHHcCCCcCHHHHHHcCCcCeecChhHH
Confidence            9999999999999999999999998763

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-47  Score=306.38  Aligned_cols=182  Identities=26%  Similarity=0.421  Sum_probs=165.1

Q ss_pred             CcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ..+.+.+++ +++|++|+||||++.|++|.+++.+|.++++.+++|+++|+|||||.|+.||+|.|++++....   .. 
T Consensus         5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~-   80 (261)
T PRK08138          5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAG---AI-   80 (261)
T ss_pred             CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccc---hh-
Confidence            345677887 7899999999999999999999999999999999999999999999999999999999875321   11 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                        ..+.....+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus        81 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  158 (261)
T PRK08138         81 --EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK  158 (261)
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence              123344566788899999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +.+++++|++++++||+++||||++||+++
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  188 (261)
T PRK08138        159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQ  188 (261)
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCcEecCchH
Confidence            999999999999999999999999999876

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-47  Score=306.21  Aligned_cols=185  Identities=24%  Similarity=0.391  Sum_probs=167.9

Q ss_pred             eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHH
Q 041986           10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE   89 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (195)
                      ++.++++++|++|+||+|++.|++|.+++.+|.+++++++.|+++|+|||+|.|+.||+|.|++++...... .......
T Consensus         4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~-~~~~~~~   82 (260)
T PRK07511          4 ELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAK-PPSVQAA   82 (260)
T ss_pred             eeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccc-cchhHHH
Confidence            478899999999999999999999999999999999999999999999999999999999999987542111 1122234


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986           90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL  168 (195)
Q Consensus        90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l  168 (195)
                      +.....+++.++.++|||+||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.++
T Consensus        83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l  162 (260)
T PRK07511         83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATEL  162 (260)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHH
Confidence            4556677888999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++|++++++||+++||||++||++++
T Consensus       163 ~ltg~~~~a~eA~~~Glv~~vv~~~~~  189 (260)
T PRK07511        163 LLEGKPISAERLHALGVVNRLAEPGQA  189 (260)
T ss_pred             HHhCCCCCHHHHHHcCCccEeeCchHH
Confidence            999999999999999999999998753

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=306.38  Aligned_cols=183  Identities=26%  Similarity=0.412  Sum_probs=163.9

Q ss_pred             cceEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986            8 QIHVLVE-ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         8 ~~~v~~~-~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +.++.++ .+++|++||||||++.|++|.+++++|.++++.++.|+++|+|||||.| +.||+|.|++++.....    .
T Consensus         5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~----~   80 (256)
T PRK06143          5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ----A   80 (256)
T ss_pred             cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh----h
Confidence            3457777 4689999999999999999999999999999999999999999999999 79999999998754211    1


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ....+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|+++++++++| .+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~  159 (256)
T PRK06143         81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR  159 (256)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence            22344456677888999999999999999999999999999999999999999999999998 77888999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||++||++++
T Consensus       160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  190 (256)
T PRK06143        160 TRWLLLTGETIDAAQALAWGLVDRVVPLAEL  190 (256)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcCeecCHHHH
Confidence            9999999999999999999999999998753

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.5e-47  Score=306.39  Aligned_cols=185  Identities=24%  Similarity=0.348  Sum_probs=166.2

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ..+.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++....   ....
T Consensus         9 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~   85 (266)
T PRK08139          9 EAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAAR---GLAY   85 (266)
T ss_pred             cCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhccc---chhH
Confidence            4557899999999999999999999999999999999999999999999999999999999999999875321   1122


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      .....+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ .++++|++| ..+
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A  164 (266)
T PRK08139         86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA  164 (266)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence            234455667788899999999999999999999999999999999999999999999999998764 578999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+|+|++++
T Consensus       165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  194 (266)
T PRK08139        165 MEMLLTGEFIDAATAREWGLVNRVVPADAL  194 (266)
T ss_pred             HHHHHcCCccCHHHHHHcCCccEeeChhHH
Confidence            999999999999999999999999998764

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-47  Score=307.44  Aligned_cols=185  Identities=24%  Similarity=0.388  Sum_probs=164.6

Q ss_pred             eEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhc--ccHHH
Q 041986           10 HVLVEERANSRTVILNRPHVLNALNT-SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE--GRVEE   86 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~~N~~~~-~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~--~~~~~   86 (195)
                      .+.++++++|++||||||++.|++|. +++.+|.+++++++.|+++++|||+|.|+.||+|.|++++......  .....
T Consensus         4 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (266)
T PRK09245          4 FLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPAD   83 (266)
T ss_pred             ceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchh
Confidence            58899999999999999999999995 9999999999999999999999999999999999999987542210  01111


Q ss_pred             -HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           87 -CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        87 -~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                       ...+...+.+++.++.++|||+||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~  163 (266)
T PRK09245         84 IRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMAR  163 (266)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHH
Confidence             1122233456788899999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +.+++++|++++|+||+++||||+++|+++
T Consensus       164 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  193 (266)
T PRK09245        164 AAEMAFTGDAIDAATALEWGLVSRVVPADQ  193 (266)
T ss_pred             HHHHHHcCCCcCHHHHHHcCCcceecCHHH
Confidence            999999999999999999999999999875

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-47  Score=307.02  Aligned_cols=180  Identities=24%  Similarity=0.286  Sum_probs=159.1

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      |.++++++|++||||||++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.....+...    .+
T Consensus         1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~----~~   76 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGF----PF   76 (255)
T ss_pred             CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchh----hh
Confidence            46788999999999999999999999999999999999999999999999999999999999987542211111    11


Q ss_pred             HHH-HHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986           91 FRT-LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL  168 (195)
Q Consensus        91 ~~~-~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l  168 (195)
                      ... ...+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.++
T Consensus        77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  156 (255)
T PRK06563         77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY  156 (255)
T ss_pred             hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence            111 122233578899999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +++|++++|+||+++||||+++|+++
T Consensus       157 ~ltg~~~~a~eA~~~Glv~~vv~~~~  182 (255)
T PRK06563        157 LLTGDEFDAQEALRLGLVQEVVPPGE  182 (255)
T ss_pred             HHcCCCcCHHHHHHcCCCcEeeCHHH
Confidence            99999999999999999999999875

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-47  Score=309.06  Aligned_cols=190  Identities=25%  Similarity=0.360  Sum_probs=166.9

Q ss_pred             CCcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc--
Q 041986            6 SSQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG--   82 (195)
Q Consensus         6 ~~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~--   82 (195)
                      ++++.|.+++ +++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++.......  
T Consensus         6 ~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~   85 (276)
T PRK05864          6 STMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGL   85 (276)
T ss_pred             CCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccc
Confidence            4667788887 8899999999999999999999999999999999999999999999999999999999864211100  


Q ss_pred             -cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccC-CCchhhHhhhc
Q 041986           83 -RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHP-DVGSSYYLSRL  160 (195)
Q Consensus        83 -~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p-~~g~~~~l~r~  160 (195)
                       .............+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++++|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~  165 (276)
T PRK05864         86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA  165 (276)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence             1111122334556678888999999999999999999999999999999999999999999999997 78889999999


Q ss_pred             ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +| ..+.+++++|++++|+||+++||||+++|++++
T Consensus       166 vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  201 (276)
T PRK05864        166 IGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQL  201 (276)
T ss_pred             hCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHH
Confidence            99 899999999999999999999999999998753

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-47  Score=304.92  Aligned_cols=182  Identities=25%  Similarity=0.350  Sum_probs=163.9

Q ss_pred             ceEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            9 IHVLVEERAN---SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         9 ~~v~~~~~~~---v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +.|.++++++   |++|+||||++.|++|.+++++|.++++.++.|+++++|||+|.|+.||+|.|++++...... .. 
T Consensus         3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~-~~-   80 (251)
T PRK06023          3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG-GT-   80 (251)
T ss_pred             ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc-ch-
Confidence            3688888874   999999999999999999999999999999999999999999999999999999987542111 11 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                         .+.....+++.++.++||||||+|||+|+|||++++++||+||++++++|++||+++|++|++|+++++++++| .+
T Consensus        81 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~  157 (251)
T PRK06023         81 ---SFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR  157 (251)
T ss_pred             ---hhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence               12234456788899999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||++||++++
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  188 (251)
T PRK06023        158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAV  188 (251)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCcceeeCHHHH
Confidence            9999999999999999999999999998753

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=1.7e-47  Score=306.39  Aligned_cols=184  Identities=21%  Similarity=0.307  Sum_probs=162.8

Q ss_pred             ceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHH
Q 041986            9 IHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         9 ~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      +.+.+++ +++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++....... ...
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~~   80 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYID-DSG   80 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccc-hhh
Confidence            4578888 899999999999999999999999999999999999999999999999 7999999998764221111 110


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ...  .....+++.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++
T Consensus        81 ~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a  158 (259)
T TIGR01929        81 VHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA  158 (259)
T ss_pred             HHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence            011  12345777889999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++++|++++|+||+++||||+|||++++
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  188 (259)
T TIGR01929       159 REIWFLCRQYDAEQALDMGLVNTVVPLADL  188 (259)
T ss_pred             HHHHHhCCccCHHHHHHcCCcccccCHHHH
Confidence            999999999999999999999999998753

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-47  Score=311.50  Aligned_cols=187  Identities=24%  Similarity=0.358  Sum_probs=165.8

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh-c-----
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK-E-----   81 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~-~-----   81 (195)
                      ++.|.++++++|++|+||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++..... .     
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (296)
T PRK08260          3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP   82 (296)
T ss_pred             cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence            4578999999999999999999999999999999999999999999999999999999999999998643110 0     


Q ss_pred             ------ccHH-HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchh
Q 041986           82 ------GRVE-ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSS  154 (195)
Q Consensus        82 ------~~~~-~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~  154 (195)
                            .... ....+.+...+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~  162 (296)
T PRK08260         83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS  162 (296)
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence                  0000 111223334567888999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          155 YYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       155 ~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++|++| .++.+++++|++++|+||+++||||+|||+++
T Consensus       163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~  203 (296)
T PRK08260        163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDE  203 (296)
T ss_pred             hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHH
Confidence            99999999 89999999999999999999999999999875

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=2e-47  Score=305.66  Aligned_cols=183  Identities=26%  Similarity=0.360  Sum_probs=161.9

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      |.++++++|++||||||++.|++|.+++.+|.++++.++.|+ +++|||||.|+.||+|.|++++...... ..+....+
T Consensus         1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~~~   78 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGG-APDLGRTI   78 (256)
T ss_pred             CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcccc-chhHHHHH
Confidence            467889999999999999999999999999999999999988 9999999999999999999987532111 11111112


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG  169 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~  169 (195)
                      ...+..+++++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+++++
T Consensus        79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~  158 (256)
T TIGR02280        79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA  158 (256)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            223345778899999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++|++++|+||+++||||+++|++++
T Consensus       159 l~g~~~~a~eA~~~Glv~~vv~~~~l  184 (256)
T TIGR02280       159 MLGEKLDARTAASWGLIWQVVDDAAL  184 (256)
T ss_pred             HcCCCCCHHHHHHcCCcceeeChHHH
Confidence            99999999999999999999998753

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-47  Score=306.99  Aligned_cols=188  Identities=26%  Similarity=0.363  Sum_probs=167.3

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCceeccccchhHHHhhhcc--c
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNS-GVDFVVIKGNGRSFCAGGDVVGAYRMLKEG--R   83 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~-~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~--~   83 (195)
                      +++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+ ++++|||||.|+.||+|.|++++.......  .
T Consensus         2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T PRK05981          2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG   81 (266)
T ss_pred             CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence            4667999999999999999999999999999999999999999875 499999999999999999999875422111  0


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      ......+...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| 
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~  161 (266)
T PRK05981         82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK  161 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence            0111233445667888999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ..+++++++|++++|+||+++|||++++|+++
T Consensus       162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  193 (266)
T PRK05981        162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAE  193 (266)
T ss_pred             HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhH
Confidence            88999999999999999999999999999875

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=3.5e-47  Score=307.01  Aligned_cols=185  Identities=25%  Similarity=0.383  Sum_probs=163.4

Q ss_pred             eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhc---cc---
Q 041986           10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE---GR---   83 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~---~~---   83 (195)
                      .+..+.+++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++......   .+   
T Consensus         9 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   88 (275)
T PLN02664          9 IIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR   88 (275)
T ss_pred             EEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchh
Confidence            345556899999999999999999999999999999999999999999999999999999999987542110   00   


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986           84 -VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG  162 (195)
Q Consensus        84 -~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g  162 (195)
                       ......+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|++|+++++++++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  168 (275)
T PLN02664         89 SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVG  168 (275)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhC
Confidence             1122233445567788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCCCCHHHHHhcCccccccCC-CC
Q 041986          163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLS-AV  194 (195)
Q Consensus       163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~-~~  194 (195)
                       .++.+++++|++++|+||+++||||++||+ ++
T Consensus       169 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~  202 (275)
T PLN02664        169 YGNAMELALTGRRFSGSEAKELGLVSRVFGSKED  202 (275)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhH
Confidence             999999999999999999999999999985 54

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-47  Score=304.82  Aligned_cols=183  Identities=25%  Similarity=0.434  Sum_probs=166.5

Q ss_pred             ceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHH
Q 041986            9 IHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         9 ~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ++|.+++ +++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.| +.||+|.|++++....    ...
T Consensus         3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~----~~~   78 (260)
T PRK07657          3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMN----EEQ   78 (260)
T ss_pred             ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCC----hhh
Confidence            4788886 789999999999999999999999999999999999999999999999 5999999999875321    112


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ...+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a  158 (260)
T PRK07657         79 VRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRA  158 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHH
Confidence            2344456677888999999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++++||+++||||+++|++++
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  188 (260)
T PRK07657        159 KELIYTGRRISAQEAKEIGLVEFVVPAHLL  188 (260)
T ss_pred             HHHHHhCCCCCHHHHHHcCCCCeecCHHHH
Confidence            999999999999999999999999998763

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-47  Score=305.28  Aligned_cols=184  Identities=31%  Similarity=0.443  Sum_probs=168.2

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ....+.++++++|++|+||+|++.|++|.+++++|.+++++++.|+++++|||+|.|+.||+|.|++++.......    
T Consensus         3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~----   78 (259)
T PRK06688          3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP----   78 (259)
T ss_pred             CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch----
Confidence            3446899999999999999999899999999999999999999999999999999999999999999876432211    


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                       ..+...+.++++++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+
T Consensus        79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  157 (259)
T PRK06688         79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARA  157 (259)
T ss_pred             -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHH
Confidence             234456677888999999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+++|++++
T Consensus       158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l  187 (259)
T PRK06688        158 AEMLLLGEPLSAEEALRIGLVNRVVPAAEL  187 (259)
T ss_pred             HHHHHhCCccCHHHHHHcCCcceecCHHHH
Confidence            999999999999999999999999998653

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=5.4e-47  Score=303.33  Aligned_cols=183  Identities=31%  Similarity=0.474  Sum_probs=167.9

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .+..+.++.+++|++||||+|++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++.+.. .  .+...
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-~--~~~~~   79 (257)
T COG1024           3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-P--EDGNA   79 (257)
T ss_pred             CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-c--cchhH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999875 1  11111


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ...+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a  159 (257)
T COG1024          80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA  159 (257)
T ss_pred             HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence            1255566677999999999999999999999999999999999999999999999999999998899999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      .+++++|++++++||+++|||++++++
T Consensus       160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~  186 (257)
T COG1024         160 KELLLTGEPISAAEALELGLVDEVVPD  186 (257)
T ss_pred             HHHHHcCCcCCHHHHHHcCCcCeeeCC
Confidence            999999999999999999999999985

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-47  Score=306.45  Aligned_cols=188  Identities=26%  Similarity=0.295  Sum_probs=165.0

Q ss_pred             CcceEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH-
Q 041986            7 SQIHVLVEERA-NSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV-   84 (195)
Q Consensus         7 ~~~~v~~~~~~-~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~-   84 (195)
                      .++.|.+++++ +|++|+||||++.|++|.+++++|.++++.++.|+++++|||+|.|+.||+|.|++++......... 
T Consensus         3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   82 (272)
T PRK06210          3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR   82 (272)
T ss_pred             CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence            45679999998 9999999999999999999999999999999999999999999999999999999987542211000 


Q ss_pred             -H---HH-HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986           85 -E---EC-KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR  159 (195)
Q Consensus        85 -~---~~-~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r  159 (195)
                       .   .. ......+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~  162 (272)
T PRK06210         83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPR  162 (272)
T ss_pred             cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHh
Confidence             0   00 001112345677888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          160 LPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       160 ~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++| ..+++++++|++++|+||+++||||+++|+++
T Consensus       163 ~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  198 (272)
T PRK06210        163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE  198 (272)
T ss_pred             hhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence            999 89999999999999999999999999999865

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=4e-47  Score=297.63  Aligned_cols=183  Identities=26%  Similarity=0.339  Sum_probs=162.9

Q ss_pred             cceEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc
Q 041986            8 QIHVLVEER-----ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG   82 (195)
Q Consensus         8 ~~~v~~~~~-----~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~   82 (195)
                      ++.|.++..     ++|++|+||||++ |++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.....  
T Consensus         2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~--   78 (222)
T PRK05869          2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA--   78 (222)
T ss_pred             ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh--
Confidence            345555554     8999999999984 99999999999999999999999999999999999999999998754221  


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986           83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG  162 (195)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g  162 (195)
                        .......+..+++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+++|++|
T Consensus        79 --~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig  156 (222)
T PRK05869         79 --QEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAG  156 (222)
T ss_pred             --hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhC
Confidence              111223345567888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                       ..+++++++|++++|+||+++||||+++|++++
T Consensus       157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l  190 (222)
T PRK05869        157 PSRAKELVFSGRFFDAEEALALGLIDEMVAPDDV  190 (222)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHH
Confidence             899999999999999999999999999998763

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.5e-47  Score=302.86  Aligned_cols=185  Identities=26%  Similarity=0.379  Sum_probs=162.0

Q ss_pred             cceEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            8 QIHVLVEER-ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         8 ~~~v~~~~~-~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ++.+.++++ ++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++........ ..
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-~~   81 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR-AT   81 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccch-hh
Confidence            556888885 6899999999999999999999999999999999999999999999999999999998753221111 11


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      .......+..+++++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++ +| ..+
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a  160 (262)
T PRK07468         82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANA  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHH
Confidence            1122334566788899999999999999999999999999999999999999999999999999998886655 88 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+|+++|++++|+||+++||||+++|+++
T Consensus       161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~  189 (262)
T PRK07468        161 RRVFMSARLFDAEEAVRLGLLSRVVPAER  189 (262)
T ss_pred             HHHHHhCCccCHHHHHHcCCcceecCHHH
Confidence            99999999999999999999999999765

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-47  Score=302.20  Aligned_cols=178  Identities=26%  Similarity=0.412  Sum_probs=161.7

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.+.++++++|++|+||||++.|++|.+++++|.++++.++.|+++++|||||.|+.||+|.|++++.....+..    .
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~----~   78 (249)
T PRK05870          3 DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPA----E   78 (249)
T ss_pred             ccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccch----H
Confidence            458889999999999999999999999999999999999999999999999999999999999998764322111    1


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      +......+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+++
T Consensus        79 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~  158 (249)
T PRK05870         79 DGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARA  158 (249)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHH
Confidence            22344455677888999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCcccccc
Q 041986          168 LGLTGATLSGEEMLFCGLATHYS  190 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv  190 (195)
                      ++++|++++|+||+++||||++|
T Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv  181 (249)
T PRK05870        159 ALLFGMRFDAEAAVRHGLALMVA  181 (249)
T ss_pred             HHHhCCccCHHHHHHcCCHHHHH
Confidence            99999999999999999999998

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-46  Score=301.98  Aligned_cols=182  Identities=25%  Similarity=0.343  Sum_probs=161.0

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      .++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++.......  .
T Consensus         2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~--~   79 (259)
T PRK06494          2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG--W   79 (259)
T ss_pred             CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch--h
Confidence            456789999999999999999999999999999999999999999999999999998 7999999999865322111  0


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      .    ...+..+. .+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus        80 ~----~~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  154 (259)
T PRK06494         80 P----ESGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR  154 (259)
T ss_pred             h----hHHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence            0    11122233 345899999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||++||++++
T Consensus       155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l  185 (259)
T PRK06494        155 AMGMILTGRRVTAREGLELGFVNEVVPAGEL  185 (259)
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCcEecCHhHH
Confidence            9999999999999999999999999998753

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=4.6e-47  Score=301.78  Aligned_cols=179  Identities=35%  Similarity=0.566  Sum_probs=168.9

Q ss_pred             EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHH
Q 041986           12 LVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELF   91 (195)
Q Consensus        12 ~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~   91 (195)
                      .++++++|++|+||+|++.|++|.+++.+|.++|+.++.|+++++||++|.++.||+|.|++++...    +......+.
T Consensus         1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~   76 (245)
T PF00378_consen    1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF   76 (245)
T ss_dssp             EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred             CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence            3789999999999999889999999999999999999999999999999999999999999998876    334556777


Q ss_pred             HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhh
Q 041986           92 RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGL  170 (195)
Q Consensus        92 ~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l  170 (195)
                      +.+..++.++..+||||||+|||+|+|+|++++++||+||+++++.|++||+++|++|++|++++++|++| ..+.++++
T Consensus        77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l  156 (245)
T PF00378_consen   77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL  156 (245)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999 89999999


Q ss_pred             cCCCCCHHHHHhcCccccccCCCC
Q 041986          171 TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       171 ~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +|++++|+||+++||||+++|+++
T Consensus       157 ~g~~~~a~eA~~~Glv~~v~~~~~  180 (245)
T PF00378_consen  157 TGEPISAEEALELGLVDEVVPDEE  180 (245)
T ss_dssp             HTCEEEHHHHHHTTSSSEEESGGG
T ss_pred             ccccchhHHHHhhcceeEEcCchh
Confidence            999999999999999999999876

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.3e-46  Score=315.11  Aligned_cols=189  Identities=56%  Similarity=1.011  Sum_probs=168.3

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ..+.|.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|.|+.||+|+|++++...........
T Consensus        35 ~~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~  114 (401)
T PLN02157         35 LDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDA  114 (401)
T ss_pred             CCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999998764322111122


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE  166 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~  166 (195)
                      ...++.....+..++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|..+.
T Consensus       115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~  194 (401)
T PLN02157        115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGE  194 (401)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHH
Confidence            23344444456778899999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++||++++|+||+++||++++||++++
T Consensus       195 ~L~LTG~~i~A~eA~~~GLv~~vVp~~~l  223 (401)
T PLN02157        195 YLGLTGLKLSGAEMLACGLATHYIRSEEI  223 (401)
T ss_pred             HHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence            99999999999999999999999998763

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-46  Score=300.85  Aligned_cols=179  Identities=26%  Similarity=0.365  Sum_probs=159.1

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++.....   ...  
T Consensus         3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~--   77 (254)
T PRK08252          3 DEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGER---PSI--   77 (254)
T ss_pred             ceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccc---hhh--
Confidence            468899999999999999999999999999999999999999999999999999999999999998764211   111  


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                       ....+..+..  ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+++
T Consensus        78 -~~~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~  154 (254)
T PRK08252         78 -PGRGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAME  154 (254)
T ss_pred             -hHHHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHH
Confidence             1111222221  4799999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||+|||++++
T Consensus       155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l  182 (254)
T PRK08252        155 LALTGDMLTAERAHELGLVNRLTEPGQA  182 (254)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCcchH
Confidence            9999999999999999999999998753

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=9.2e-47  Score=304.18  Aligned_cols=186  Identities=20%  Similarity=0.324  Sum_probs=164.2

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +++.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++..... ....
T Consensus        11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~   89 (273)
T PRK07396         11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGY-VDDD   89 (273)
T ss_pred             CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccc-cchh
Confidence            456789999999999999999999999999999999999999999999999999999 69999999998642111 0111


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      .....  ...++++.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus        90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~  167 (273)
T PRK07396         90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK  167 (273)
T ss_pred             hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence            11111  2335677888999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||+|||++++
T Consensus       168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l  198 (273)
T PRK07396        168 AREIWFLCRQYDAQEALDMGLVNTVVPLADL  198 (273)
T ss_pred             HHHHHHhCCCcCHHHHHHcCCcCeecCHHHH
Confidence            9999999999999999999999999998753

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=1.2e-46  Score=302.20  Aligned_cols=181  Identities=28%  Similarity=0.431  Sum_probs=162.3

Q ss_pred             CcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +.+.|.+++ +++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++...... .. 
T Consensus         7 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~-   84 (265)
T PLN02888          7 SENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKG-DV-   84 (265)
T ss_pred             CCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccc-hh-
Confidence            455777885 789999999999999999999999999999999999999999999999999999999986532111 11 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                        .   ....+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..
T Consensus        85 --~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  159 (265)
T PLN02888         85 --K---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR  159 (265)
T ss_pred             --h---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence              0   11234666788999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +++++++|++++|+||+++||||++||+++
T Consensus       160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  189 (265)
T PLN02888        160 AREVSLTAMPLTAETAERWGLVNHVVEESE  189 (265)
T ss_pred             HHHHHHhCCccCHHHHHHcCCccEeeChHH
Confidence            999999999999999999999999999875

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=1e-46  Score=302.11  Aligned_cols=182  Identities=18%  Similarity=0.281  Sum_probs=164.3

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-C-CceeccccchhHHHhhhcccH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN-G-RSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~-g-~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      +++.+.++++++|++||||||++.|++|.+++.+|.+++++++.|+ +++|||||. + +.||+|.|++++.....  +.
T Consensus         2 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~--~~   78 (261)
T PRK11423          2 SMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR--DP   78 (261)
T ss_pred             CccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc--cH
Confidence            4557999999999999999999999999999999999999999887 999999996 3 89999999998743211  11


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                         ..+...+.++++++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| .
T Consensus        79 ---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~  155 (261)
T PRK11423         79 ---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH  155 (261)
T ss_pred             ---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence               123345567888999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+.+++++|++++|+||+++||||+|||+++
T Consensus       156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~  186 (261)
T PRK11423        156 IVKEMFFTASPITAQRALAVGILNHVVEVEE  186 (261)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCcCcccCHHH
Confidence            9999999999999999999999999999875

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-46  Score=301.76  Aligned_cols=183  Identities=30%  Similarity=0.420  Sum_probs=165.8

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      +++++.++++++|++|+||+|++.|++|.+++.+|.++++.+ .|+++++||++|.|+.||+|.|++++......   ..
T Consensus         4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~---~~   79 (260)
T PRK07659          4 KMESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDE---SK   79 (260)
T ss_pred             CCceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCc---hh
Confidence            456799999999999999999999999999999999999999 57899999999999999999999987542211   12


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ...+...+++++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a  159 (260)
T PRK07659         80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKA  159 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHH
Confidence            2344556677888999999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++++|++++|+||+++||||++| +++
T Consensus       160 ~~l~ltg~~~~a~eA~~~Glv~~vv-~~~  187 (260)
T PRK07659        160 KQIIWEGKKLSATEALDLGLIDEVI-GGD  187 (260)
T ss_pred             HHHHHhCCccCHHHHHHcCChHHHh-hhH
Confidence            9999999999999999999999999 543

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.6e-46  Score=299.42  Aligned_cols=176  Identities=25%  Similarity=0.427  Sum_probs=160.3

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.+ +.||+|.|++++....    ......+...+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~----~~~~~~~~~~~   77 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMS----PSEVQKFVNSL   77 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccC----hHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999985 8999999999875321    11223445556


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCC
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGA  173 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~  173 (195)
                      ..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.+++++|+
T Consensus        78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~  157 (251)
T PLN02600         78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR  157 (251)
T ss_pred             HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence            67888899999999999999999999999999999999999999999999999999999999999999 89999999999


Q ss_pred             CCCHHHHHhcCccccccCCCCC
Q 041986          174 TLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       174 ~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++||+++||||++||++++
T Consensus       158 ~~~a~eA~~~Glv~~vv~~~~~  179 (251)
T PLN02600        158 RIGAREAASMGLVNYCVPAGEA  179 (251)
T ss_pred             ccCHHHHHHcCCCcEeeChhHH
Confidence            9999999999999999998763

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-46  Score=300.21  Aligned_cols=184  Identities=28%  Similarity=0.354  Sum_probs=163.4

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH-
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE-   86 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~-   86 (195)
                      ++.+.++++++|++||||||++.|++|.+++++|.++++.++.|+++++|||+|.|+.||+|.|++++...... .... 
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~~   80 (262)
T PRK07509          2 MDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGN-AVKLL   80 (262)
T ss_pred             CceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccch-hhhhH
Confidence            46789999999999999999999999999999999999999999999999999999999999999987542111 1111 


Q ss_pred             ---HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           87 ---CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        87 ---~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                         .......+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~  160 (262)
T PRK07509         81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRK  160 (262)
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCH
Confidence               1111223455677788999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      ..+.+++++|++++|+||+++||||+++++
T Consensus       161 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  190 (262)
T PRK07509        161 DVARELTYTARVFSAEEALELGLVTHVSDD  190 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence            899999999999999999999999999964

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.8e-46  Score=297.74  Aligned_cols=182  Identities=20%  Similarity=0.289  Sum_probs=165.6

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.+.++++++|++|+||+|++.|++|.+++.+|.+++++++.|+++|+|||||.|+.||+|.|++++......  .  
T Consensus         3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~--~--   78 (249)
T PRK07110          3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTG--K--   78 (249)
T ss_pred             CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccch--h--
Confidence            466788999999999999999999999999999999999999999999999999999999999999987542211  1  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                       ..+. . .+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+
T Consensus        79 -~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  155 (249)
T PRK07110         79 -GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG  155 (249)
T ss_pred             -hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence             1111 1 46788899999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++++||+++|||++|+|++++
T Consensus       156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l  185 (249)
T PRK07110        156 QEMLLTARYYRGAELKKRGVPFPVLPRAEV  185 (249)
T ss_pred             HHHHHcCCccCHHHHHHcCCCeEEeChHHH
Confidence            999999999999999999999999998764

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-46  Score=300.28  Aligned_cols=181  Identities=29%  Similarity=0.367  Sum_probs=159.2

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++..... ...   .
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~---~   78 (254)
T PRK08259          3 MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL---H   78 (254)
T ss_pred             ceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh---h
Confidence            358899999999999999999999999999999999999999999999999999999999999998653211 110   0


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      ..  ....+...+..+|||||++|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++++|++| ..+.+
T Consensus        79 ~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~  156 (254)
T PRK08259         79 PS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMD  156 (254)
T ss_pred             hh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            10  0111222334799999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||+|||++++
T Consensus       157 lll~g~~~~a~eA~~~Glv~~vv~~~~l  184 (254)
T PRK08259        157 LILTGRPVDADEALAIGLANRVVPKGQA  184 (254)
T ss_pred             HHHcCCccCHHHHHHcCCCCEeeChhHH
Confidence            9999999999999999999999998764

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=2.5e-46  Score=312.35  Aligned_cols=195  Identities=51%  Similarity=0.898  Sum_probs=171.6

Q ss_pred             CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh
Q 041986            1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK   80 (195)
Q Consensus         1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~   80 (195)
                      |.-++++...|.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|.|+.||+|+|++++.....
T Consensus         1 ~~~~~~~~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~   80 (381)
T PLN02988          1 MAVEMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIE   80 (381)
T ss_pred             CccccccCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhc
Confidence            56667777789999999999999999999999999999999999999999999999999999999999999998754322


Q ss_pred             cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986           81 EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL  160 (195)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~  160 (195)
                      .........+++....+..++.++|||+||++||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|+
T Consensus        81 ~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl  160 (381)
T PLN02988         81 QGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRL  160 (381)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHH
Confidence            22111122333333345667889999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          161 PGHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       161 ~g~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +|..+.++++||++++|+||+++||++++||++++
T Consensus       161 ~G~~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l  195 (381)
T PLN02988        161 PGFFGEYVGLTGARLDGAEMLACGLATHFVPSTRL  195 (381)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHcCCceEecCHhHH
Confidence            99778999999999999999999999999998753

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=2.2e-46  Score=309.97  Aligned_cols=186  Identities=47%  Similarity=0.823  Sum_probs=165.2

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      +.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| +.||+|.|++++............
T Consensus         3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (342)
T PRK05617          3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA   82 (342)
T ss_pred             ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence            3688999999999999999999999999999999999999999999999999999 999999999987543211111111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY  167 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~  167 (195)
                      ..+.....+++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..+++
T Consensus        83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~  162 (342)
T PRK05617         83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY  162 (342)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence            12333444677889999999999999999999999999999999999999999999999999999999999997788999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++|++++|+||+++|||++++|+++
T Consensus       163 llltG~~i~A~eA~~~GLv~~vv~~~~  189 (342)
T PRK05617        163 LALTGARISAADALYAGLADHFVPSAD  189 (342)
T ss_pred             HHHcCCCCCHHHHHHcCCcceecCHHH
Confidence            999999999999999999999999875

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=3.9e-46  Score=298.87  Aligned_cols=180  Identities=21%  Similarity=0.363  Sum_probs=160.9

Q ss_pred             eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHH
Q 041986           10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      .+.++++++|++||||||+ .|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++...... ..    
T Consensus         4 ~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~-~~----   77 (261)
T PRK03580          4 SLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP-DA----   77 (261)
T ss_pred             eEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcc-hh----
Confidence            5889999999999999996 6999999999999999999999999999999999 799999999987542211 11    


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+.+
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~  157 (261)
T PRK03580         78 DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANE  157 (261)
T ss_pred             hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            11112234567888999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||+++|++++
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l  185 (261)
T PRK03580        158 MVMTGRRMDAEEALRWGIVNRVVPQAEL  185 (261)
T ss_pred             HHHhCCccCHHHHHHcCCCcEecCHhHH
Confidence            9999999999999999999999998763

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.6e-46  Score=297.10  Aligned_cols=185  Identities=26%  Similarity=0.328  Sum_probs=164.9

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ..+.+.++++++|++|+||+|++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++...... ..+.
T Consensus         4 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~   82 (260)
T PRK07827          4 VDTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGD-PYDA   82 (260)
T ss_pred             CCcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccC-chhH
Confidence            345788999999999999999999999999999999999999999999999999999999999999987542111 1111


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE  166 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~  166 (195)
                      ...+...+.++++++..+||||||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++++++++..+.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~  162 (260)
T PRK07827         83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAA  162 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHH
Confidence            22344566778889999999999999999999999999999999999999999999999999999999999998778899


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      +++++|++++|+||+++||||+++++
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~v~~~  188 (260)
T PRK07827        163 RYYLTGEKFGAAEAARIGLVTAAADD  188 (260)
T ss_pred             HHHHhCCccCHHHHHHcCCcccchHH
Confidence            99999999999999999999999753

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.6e-46  Score=296.94  Aligned_cols=182  Identities=25%  Similarity=0.403  Sum_probs=161.8

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.|.++++++|++||||||+ .|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++......  ...
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~--~~~   78 (257)
T PRK06495          2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKG--PGD   78 (257)
T ss_pred             CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCC--chh
Confidence            3567899999999999999998 6999999999999999999999999999999999999999999987542111  112


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      .........+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.   |+.++++|++| ..+
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence            22334456678888999999999999999999999999999999999999999999999997   45778999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+++++|++++|+||+++||||++||+++
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~  184 (257)
T PRK06495        156 RRMMLTGYRVPAAELYRRGVIEACLPPEE  184 (257)
T ss_pred             HHHHHcCCeeCHHHHHHcCCcceecCHHH
Confidence            99999999999999999999999999875

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=1.2e-45  Score=294.30  Aligned_cols=174  Identities=22%  Similarity=0.364  Sum_probs=157.2

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      |.++++++|++||||+|+ .|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|+.++...       .....
T Consensus         3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~-------~~~~~   74 (251)
T TIGR03189         3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD-------QCAAM   74 (251)
T ss_pred             EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch-------hHHHH
Confidence            778899999999999997 6999999999999999999999999999999999999999999875311       11223


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG  169 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~  169 (195)
                      .....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++++|++| ..+++++
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~  153 (251)
T TIGR03189        75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL  153 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH
Confidence            344566888899999999999999999999999999999999999999999999999987 46789999999 8999999


Q ss_pred             hcCCCCCHHHHHhcCccccccCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      ++|++++|+||+++|||++++|++
T Consensus       154 ltg~~~~a~eA~~~Glv~~v~~~~  177 (251)
T TIGR03189       154 YSGRSIDGAEGARIGLANAVAEDP  177 (251)
T ss_pred             HcCCCCCHHHHHHCCCcceecCcH
Confidence            999999999999999999999864

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.6e-45  Score=297.54  Aligned_cols=185  Identities=22%  Similarity=0.286  Sum_probs=157.4

Q ss_pred             eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeC-CCceeccccchhHHHhhhccc
Q 041986           10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWEN-----NSGVDFVVIKGN-GRSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~-----~~~~~~vvl~~~-g~~F~~G~dl~~~~~~~~~~~   83 (195)
                      .|.++++++|++|+|| |++.|++|.+++.+|.+++++++.     |+++++|||||. |+.||+|.|++++.......+
T Consensus        18 ~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~   96 (287)
T PRK08788         18 RVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD   96 (287)
T ss_pred             EEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence            5666678999999996 888999999999999999999998     889999999999 699999999998753211111


Q ss_pred             HHHHHHHHHHHHHHHHHHh---hCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986           84 VEECKELFRTLYSFVYLVA---TYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL  160 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~---~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~  160 (195)
                      ......+.+...+.+.++.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~  176 (287)
T PRK08788         97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR  176 (287)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH
Confidence            1111122222223333333   7999999999999999999999999999999999999999999999999999999999


Q ss_pred             ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +| .++++++++|++++|+||+++||||+++|++++
T Consensus       177 vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el  212 (287)
T PRK08788        177 VGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQG  212 (287)
T ss_pred             hhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHH
Confidence            99 999999999999999999999999999998763

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-45  Score=292.45  Aligned_cols=171  Identities=24%  Similarity=0.369  Sum_probs=156.6

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      +.++++++|++||||||++.|++|.+++.+|.+++++++.+ ++++|||||.|+.||+|.|+++...         ...+
T Consensus         2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~   71 (243)
T PRK07854          2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF   71 (243)
T ss_pred             ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence            56888999999999999999999999999999999999864 8999999999999999999985211         1123


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG  169 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~  169 (195)
                      .....++++++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| ..+++++
T Consensus        72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~  151 (243)
T PRK07854         72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML  151 (243)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence            344566788899999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCCCCHHHHHhcCccccccC
Q 041986          170 LTGATLSGEEMLFCGLATHYSL  191 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~  191 (195)
                      ++|++++|+||+++||||+|++
T Consensus       152 ltg~~~~a~eA~~~Glv~~v~~  173 (243)
T PRK07854        152 LGAEKLTAEQALATGMANRIGT  173 (243)
T ss_pred             HcCCCcCHHHHHHCCCcccccC
Confidence            9999999999999999999975

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.5e-45  Score=308.52  Aligned_cols=187  Identities=49%  Similarity=0.848  Sum_probs=166.2

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|+.||+|.|++++.......  ..
T Consensus         9 ~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~--~~   86 (379)
T PLN02874          9 AEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESD--DS   86 (379)
T ss_pred             CCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccc--hH
Confidence            4557889999999999999999999999999999999999999999999999999999999999999875422111  11


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE  166 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~  166 (195)
                      ..........+..++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..+.
T Consensus        87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~  166 (379)
T PLN02874         87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGE  166 (379)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHH
Confidence            12233344456778889999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++|||+++||++++
T Consensus       167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l  195 (379)
T PLN02874        167 YLALTGARLNGKEMVACGLATHFVPSEKL  195 (379)
T ss_pred             HHHHcCCcccHHHHHHcCCccEEeCHHHH
Confidence            99999999999999999999999998753

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-45  Score=299.43  Aligned_cols=187  Identities=21%  Similarity=0.274  Sum_probs=161.1

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh-c----
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK-E----   81 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~-~----   81 (195)
                      +++.+.++++++|++|+||+|++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++..... .    
T Consensus         2 ~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~   81 (288)
T PRK08290          2 EYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPD   81 (288)
T ss_pred             CCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccc
Confidence            46679999999999999999999999999999999999999999999999999999999999999997632111 0    


Q ss_pred             ------------cc-HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCccccccc
Q 041986           82 ------------GR-VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFH  148 (195)
Q Consensus        82 ------------~~-~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~  148 (195)
                                  .. ..........+.+++..+.++|||+||+|||+|+|+|++|+++||+||++++++|++||+++|+ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-  160 (288)
T PRK08290         82 QHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-  160 (288)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-
Confidence                        00 0111112234456777889999999999999999999999999999999999999999999998 


Q ss_pred             CCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          149 PDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       149 p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      |+ .+.+++++++| ..+++++++|++++|+||+++||||++||++++
T Consensus       161 ~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l  207 (288)
T PRK08290        161 PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDEL  207 (288)
T ss_pred             Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHH
Confidence            44 35677899999 899999999999999999999999999998753

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.8e-45  Score=302.24  Aligned_cols=187  Identities=20%  Similarity=0.321  Sum_probs=164.6

Q ss_pred             CCcceEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcc
Q 041986            6 SSQIHVLVEE--RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEG   82 (195)
Q Consensus         6 ~~~~~v~~~~--~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~   82 (195)
                      .+++.|.+++  +++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.| +.||+|.|++++..... .
T Consensus        62 ~~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~-~  140 (327)
T PLN02921         62 KEFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGY-V  140 (327)
T ss_pred             cCCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccc-c
Confidence            4677899998  589999999999999999999999999999999999999999999999 89999999997643110 1


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986           83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG  162 (195)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g  162 (195)
                      ..+....+  ...+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|
T Consensus       141 ~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG  218 (327)
T PLN02921        141 GPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG  218 (327)
T ss_pred             chhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence            11111111  1235677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                       ..+++++++|++++|+||+++||||+|||++++
T Consensus       219 ~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l  252 (327)
T PLN02921        219 QKKAREMWFLARFYTASEALKMGLVNTVVPLDEL  252 (327)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHH
Confidence             899999999999999999999999999998753

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-45  Score=300.69  Aligned_cols=190  Identities=21%  Similarity=0.261  Sum_probs=163.4

Q ss_pred             CCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc
Q 041986            3 LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG   82 (195)
Q Consensus         3 ~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~   82 (195)
                      ..++++++|.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++.......
T Consensus         4 ~~~~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~   83 (302)
T PRK08272          4 VDLDNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG   83 (302)
T ss_pred             cccCCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999876432110


Q ss_pred             ---c----------------HH--HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC
Q 041986           83 ---R----------------VE--ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP  141 (195)
Q Consensus        83 ---~----------------~~--~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p  141 (195)
                         .                ..  ..........+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p  163 (302)
T PRK08272         84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP  163 (302)
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence               0                00  01122345566788889999999999999999999999999999999999999999


Q ss_pred             cccccccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          142 EVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       142 e~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      |+++|.+|+.   .++++++| .++.+++++|++++|+||+++||||++||++++
T Consensus       164 e~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l  215 (302)
T PRK08272        164 PTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEEL  215 (302)
T ss_pred             chhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHH
Confidence            9998666642   35678899 999999999999999999999999999998753

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=2.1e-45  Score=296.66  Aligned_cols=185  Identities=22%  Similarity=0.302  Sum_probs=162.9

Q ss_pred             CcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC--CceeccccchhHHHhhhccc
Q 041986            7 SQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG--RSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         7 ~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g--~~F~~G~dl~~~~~~~~~~~   83 (195)
                      .++.|.+++ +++|++||||+|+ .|++|.+++.+|.++++.++.|+++++|||||.|  ++||+|.|++++.....  .
T Consensus         9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~--~   85 (278)
T PLN03214          9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT--S   85 (278)
T ss_pred             CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcccc--c
Confidence            455789998 6999999999985 7999999999999999999999999999999998  69999999998653111  1


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccc-cCCCchhhHhhhcch
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGF-HPDVGSSYYLSRLPG  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~-~p~~g~~~~l~r~~g  162 (195)
                      ......+.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|+++++++++|++|
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G  165 (278)
T PLN03214         86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID  165 (278)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC
Confidence            1111233333455778899999999999999999999999999999999999999999999999 599999999999999


Q ss_pred             -HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                       .++++++++|++++++||+++||||++||+++
T Consensus       166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~  198 (278)
T PLN03214        166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA  198 (278)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCcEecChHH
Confidence             99999999999999999999999999999875

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.6e-45  Score=292.35  Aligned_cols=183  Identities=22%  Similarity=0.333  Sum_probs=159.9

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      +++.+.++++++|++|+||+|++.|++|.+++++|.++++.++  +++++||++|.|+.||+|.|++++.........  
T Consensus         2 ~~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~--   77 (255)
T PRK07112          2 DYQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA--   77 (255)
T ss_pred             CCceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh--
Confidence            3567999999999999999999999999999999999999998  369999999999999999999987542221111  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      .........+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ ..++++++| ..+
T Consensus        78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a  156 (255)
T PRK07112         78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKA  156 (255)
T ss_pred             hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHH
Confidence            011123345678889999999999999999999999999999999999999999999999999865 567899999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++++|++++|+||+++||||++||+++
T Consensus       157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  185 (255)
T PRK07112        157 HYMTLMTQPVTAQQAFSWGLVDAYGANSD  185 (255)
T ss_pred             HHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence            99999999999999999999999998753

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.5e-45  Score=288.82  Aligned_cols=172  Identities=26%  Similarity=0.432  Sum_probs=157.4

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      |.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++....       ...+
T Consensus         2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-------~~~~   74 (248)
T PRK06072          2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF-------AIDL   74 (248)
T ss_pred             eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh-------HHHH
Confidence            578889999999999999999999999999999999999999999999999999999999999865311       1123


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGL  170 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l  170 (195)
                      .+.+..++..+.++||||||+|||+|+|+|++|+++||+||++++++|++||+++|++|++|++++++|++|.++.++++
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll  154 (248)
T PRK06072         75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV  154 (248)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence            34456678889999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             cCCCCCHHHHHhcCccccc
Q 041986          171 TGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       171 ~g~~~~a~ea~~~Glv~~v  189 (195)
                      +|++++|+||+++||||++
T Consensus       155 ~g~~~~a~eA~~~Glv~~~  173 (248)
T PRK06072        155 LGGEFTAEEAERWGLLKIS  173 (248)
T ss_pred             hCCccCHHHHHHCCCcccc
Confidence            9999999999999999964

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=9.3e-45  Score=303.86  Aligned_cols=189  Identities=63%  Similarity=1.061  Sum_probs=171.5

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ..+.|.+++++++.+||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|.|+.||+|+|++.+...........
T Consensus        40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~  119 (407)
T PLN02851         40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE  119 (407)
T ss_pred             CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999998865332222233


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGE  166 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~  166 (195)
                      ...++....++...+.++|||+||++||+|+|||+.|+++||+||++++++|++||+++|++|+.|++++++|++|..+.
T Consensus       120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~  199 (407)
T PLN02851        120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGE  199 (407)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHH
Confidence            44566667778888999999999999999999999999999999999999999999999999999999999999997799


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++||++++++||+++||++++||++++
T Consensus       200 ~L~LTG~~i~a~eA~~~GLa~~~v~~~~l  228 (407)
T PLN02851        200 YLALTGQKLNGVEMIACGLATHYCLNARL  228 (407)
T ss_pred             HHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence            99999999999999999999999998753

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=5.2e-45  Score=297.57  Aligned_cols=188  Identities=23%  Similarity=0.285  Sum_probs=161.1

Q ss_pred             cceEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-------CceeccccchhHHHh
Q 041986            8 QIHVLVEE--RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-------RSFCAGGDVVGAYRM   78 (195)
Q Consensus         8 ~~~v~~~~--~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-------~~F~~G~dl~~~~~~   78 (195)
                      +.++.+++  +++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|       +.||+|.|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            45788888  899999999999999999999999999999999999999999999998       599999999875321


Q ss_pred             h------hcccHHHHHHH-HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEe-CCeEEecCcccccccCC
Q 041986           79 L------KEGRVEECKEL-FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT-EKTVFAMPEVLIGFHPD  150 (195)
Q Consensus        79 ~------~~~~~~~~~~~-~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~-~~a~~~~pe~~~G~~p~  150 (195)
                      .      ........... .....++.+.+..+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~  181 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG  181 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence            0      00000000011 1112346677889999999999999999999999999999999 68999999999999999


Q ss_pred             CchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          151 VGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       151 ~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++++++|++| ..+.+++++|++++|+||+++|||+++||++++
T Consensus       182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l  227 (302)
T PRK08321        182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAEL  227 (302)
T ss_pred             chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHH
Confidence            999999999999 899999999999999999999999999998753

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1e-44  Score=296.42  Aligned_cols=176  Identities=20%  Similarity=0.331  Sum_probs=158.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSF   97 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l   97 (195)
                      +++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| +.||+|.|++++...... .......+.+.++++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~-~~~~~~~~~~~~~~l  116 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAG-NPQEYRQYMRLFNDM  116 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhccc-ChhHHHHHHHHHHHH
Confidence            456999999999999999999999999999999999999999999 699999999987643211 112233445556678


Q ss_pred             HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCCCCC
Q 041986           98 VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLS  176 (195)
Q Consensus        98 ~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~  176 (195)
                      ++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++++++++|++++
T Consensus       117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s  196 (360)
T TIGR03200       117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS  196 (360)
T ss_pred             HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence            88999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHhcCccccccCCCCC
Q 041986          177 GEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       177 a~ea~~~Glv~~vv~~~~l  195 (195)
                      |+||+++|||+++||++++
T Consensus       197 A~EA~~~GLVd~VVp~~~~  215 (360)
T TIGR03200       197 AHKAKRLGIIMDVVPALKV  215 (360)
T ss_pred             HHHHHHcCChheecCchhc
Confidence            9999999999999998764

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-45  Score=290.23  Aligned_cols=174  Identities=24%  Similarity=0.311  Sum_probs=154.1

Q ss_pred             EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHH
Q 041986           14 EERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRT   93 (195)
Q Consensus        14 ~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~   93 (195)
                      +++++|++||||||+ .|+++.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++....   .........+.
T Consensus         7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~---~~~~~~~~~~~   82 (249)
T PRK07938          7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATP---GFTALIDANRG   82 (249)
T ss_pred             ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhcc---chhHHHHHHHH
Confidence            468899999999997 59999999999999999999999999999999999999999999865321   11111222334


Q ss_pred             HHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcC
Q 041986           94 LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTG  172 (195)
Q Consensus        94 ~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g  172 (195)
                      ..+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++++|++| ..+.+++++|
T Consensus        83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg  159 (249)
T PRK07938         83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA  159 (249)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence            5567888999999999999999999999999999999999999999999999986   45678999999 8999999999


Q ss_pred             CCCCHHHHHhcCccccccCCCC
Q 041986          173 ATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       173 ~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++|+||+++||||++||+++
T Consensus       160 ~~~~a~eA~~~Glv~~vv~~~~  181 (249)
T PRK07938        160 ATITAAELHHFGSVEEVVPRDQ  181 (249)
T ss_pred             CcCCHHHHHHCCCccEEeCHHH
Confidence            9999999999999999999875

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-44  Score=282.58  Aligned_cols=179  Identities=18%  Similarity=0.168  Sum_probs=160.5

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.+.++++++|++||||+|+ .|++|.+++++|.++++.++  +++++||++|.|+.||+|.|++++...     .....
T Consensus         3 ~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~~   74 (229)
T PRK06213          3 ELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAAI   74 (229)
T ss_pred             ceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhHH
Confidence            36889999999999999984 79999999999999999998  467999999999999999999987532     12223


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                      .+.....++++++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+.|++++..++++++| ..++
T Consensus        75 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~  154 (229)
T PRK06213         75 ALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQ  154 (229)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHH
Confidence            44556677888999999999999999999999999999999999999 999999999999888888888899899 8899


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++||||+++|++++
T Consensus       155 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l  183 (229)
T PRK06213        155 RAVINAEMFDPEEAVAAGFLDEVVPPEQL  183 (229)
T ss_pred             HHHHcCcccCHHHHHHCCCceeccChHHH
Confidence            99999999999999999999999998753

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-44  Score=294.06  Aligned_cols=185  Identities=21%  Similarity=0.245  Sum_probs=153.1

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchh-HHH---hh-hc
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVG-AYR---ML-KE   81 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~-~~~---~~-~~   81 (195)
                      +++.+.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|+++ +..   .. .+
T Consensus         3 ~~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~   82 (298)
T PRK12478          3 DFQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTD   82 (298)
T ss_pred             CceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccc
Confidence            35678999999999999999999999999999999999999999999999999999999999999986 211   00 00


Q ss_pred             c--c-HHHHH---HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccc-cccCCCchh
Q 041986           82 G--R-VEECK---ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLI-GFHPDVGSS  154 (195)
Q Consensus        82 ~--~-~~~~~---~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~-G~~p~~g~~  154 (195)
                      .  . .....   ........++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++ |++|+  +.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--~~  160 (298)
T PRK12478         83 GRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GM  160 (298)
T ss_pred             cccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--hH
Confidence            0  0 01110   000111235667889999999999999999999999999999999999999999997 88752  33


Q ss_pred             hHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          155 YYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       155 ~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +  .+++| .++++++++|++++|+||+++||||+|||++++
T Consensus       161 ~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l  200 (298)
T PRK12478        161 W--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERL  200 (298)
T ss_pred             H--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence            3  24589 899999999999999999999999999998753

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=2.1e-43  Score=279.44  Aligned_cols=178  Identities=21%  Similarity=0.247  Sum_probs=153.5

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCceeccccchhHHHhhhcccHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVD-FVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE   89 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~-~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (195)
                      +.++++++|++|+||||++ |+++.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++...  .........
T Consensus         2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~   78 (239)
T PLN02267          2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL   78 (239)
T ss_pred             ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence            5678899999999999984 9999999999999999999888865 77789999999999999976421  111122223


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEe-CCeEEecCccccccc-CCCchhhHhhhcch-HHH-
Q 041986           90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT-EKTVFAMPEVLIGFH-PDVGSSYYLSRLPG-HLG-  165 (195)
Q Consensus        90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~-~~a~~~~pe~~~G~~-p~~g~~~~l~r~~g-~~a-  165 (195)
                      ....+.+++.++.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++ |++ ++.++++++| ..+ 
T Consensus        79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~  157 (239)
T PLN02267         79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAAR  157 (239)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHH
Confidence            44556778889999999999999999999999999999999998 568999999999997 555 5788999999 888 


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      ++++++|++++|+||+++||||+++|+
T Consensus       158 ~~llltG~~~~a~eA~~~Glv~~vv~~  184 (239)
T PLN02267        158 RDVLLRAAKLTAEEAVEMGIVDSAHDS  184 (239)
T ss_pred             HHHHHcCCcCCHHHHHHCCCcceecCC
Confidence            689999999999999999999999985

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.9e-43  Score=316.23  Aligned_cols=185  Identities=20%  Similarity=0.335  Sum_probs=166.9

Q ss_pred             eEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986           10 HVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus        10 ~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      .+.++. +++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++..... .......
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~   85 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS   85 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence            677874 89999999999999999999999999999999999999999999999999999999998754211 1112233


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .+.+...+++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.+
T Consensus        86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~  165 (715)
T PRK11730         86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE  165 (715)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence            45556677888999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||++||++++
T Consensus       166 llltG~~~~A~eA~~~GLv~~vv~~~~l  193 (715)
T PRK11730        166 WIAAGKDVRAEDALKVGAVDAVVAPEKL  193 (715)
T ss_pred             HHHcCCcCCHHHHHHCCCCeEecCHHHH
Confidence            9999999999999999999999998753

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=3.1e-43  Score=270.50  Aligned_cols=182  Identities=34%  Similarity=0.530  Sum_probs=169.7

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      +.++++++|++|+||+|++.|++|.+++++|.++++.++.|+++++|||||.++.||+|.|++++........  ...++
T Consensus         1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~--~~~~~   78 (195)
T cd06558           1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGE--EARAF   78 (195)
T ss_pred             CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccch--hHHHH
Confidence            4678889999999999998999999999999999999999999999999999999999999999876543322  34577


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG  169 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~  169 (195)
                      .+.+++++.++..+|||+|+++||+|.|+|++++++||+|+++++++|++||+++|++|+.|+.+++++++| ..+.+++
T Consensus        79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            788899999999999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++|++++++||+++||+++++|.++
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~  183 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEE  183 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhH
Confidence            9999999999999999999999865

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.7e-42  Score=309.76  Aligned_cols=185  Identities=18%  Similarity=0.303  Sum_probs=166.5

Q ss_pred             eEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986           10 HVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus        10 ~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      .+.++. +++|++|+||+|++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++...... ......
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~   85 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFAL-PDAELI   85 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccC-CHHHHH
Confidence            677774 789999999999999999999999999999999999999999999999999999999988542111 112223


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .+.+..++++.++..+|||+||++||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..+.+
T Consensus        86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~  165 (714)
T TIGR02437        86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE  165 (714)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            44455677888999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||+++|++++
T Consensus       166 llltG~~~~A~eA~~~GLvd~vv~~~~l  193 (714)
T TIGR02437       166 WIASGKENRAEDALKVGAVDAVVTADKL  193 (714)
T ss_pred             HHHcCCcCCHHHHHHCCCCcEeeChhHH
Confidence            9999999999999999999999997653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.2e-41  Score=304.89  Aligned_cols=184  Identities=24%  Similarity=0.386  Sum_probs=165.8

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeCCCceeccccchhHHHhhhccc
Q 041986            6 SSQIHVLVEERANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFV-VIKGNGRSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~v-vl~~~g~~F~~G~dl~~~~~~~~~~~   83 (195)
                      +.++++.++++++|++||||+|+ +.|++|.+++.+|.+++++++.|++++++ |++|.|+.||+|.|++++....   .
T Consensus        10 ~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~---~   86 (737)
T TIGR02441        10 MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACK---T   86 (737)
T ss_pred             CCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccC---C
Confidence            45667999999999999999998 58999999999999999999999999975 5799999999999999885321   1


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCcccccccCCCchhhHhhhcc
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVLIGFHPDVGSSYYLSRLP  161 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~~G~~p~~g~~~~l~r~~  161 (195)
                      ......+....++++.++.++||||||+|||+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|+|++
T Consensus        87 ~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprli  166 (737)
T TIGR02441        87 AQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLT  166 (737)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhh
Confidence            1223345556678889999999999999999999999999999999999987  58999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCCCCHHHHHhcCccccccCC
Q 041986          162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      | ..+.+++++|++++|+||+++||||+|||+
T Consensus       167 G~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~  198 (737)
T TIGR02441       167 GVPAALDMMLTGKKIRADRAKKMGIVDQLVDP  198 (737)
T ss_pred             CHHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence            9 899999999999999999999999999986

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=2.2e-41  Score=292.58  Aligned_cols=192  Identities=17%  Similarity=0.189  Sum_probs=161.8

Q ss_pred             CCCCcceEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeC-CCceecccc
Q 041986            4 KQSSQIHVLVEERANSRTVILNRPH----------VLNALNTSMVALLTKQYESWE-NNSGVDFVVIKGN-GRSFCAGGD   71 (195)
Q Consensus         4 ~~~~~~~v~~~~~~~v~~i~l~~p~----------~~N~~~~~~~~~l~~~l~~~~-~~~~~~~vvl~~~-g~~F~~G~d   71 (195)
                      ++..++++.++++++|++|+||+|+          +.|++|.+++.+|.++|+.++ .|+++|+|||||. |+.||+|.|
T Consensus         6 ~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~D   85 (546)
T TIGR03222         6 EPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGAN   85 (546)
T ss_pred             CCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcC
Confidence            4556779999999999999999975          899999999999999999999 7899999999997 489999999


Q ss_pred             chhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCccc-cccc
Q 041986           72 VVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVL-IGFH  148 (195)
Q Consensus        72 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~-~G~~  148 (195)
                      ++++.....................+.+.+.++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|++
T Consensus        86 L~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~  165 (546)
T TIGR03222        86 IFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVL  165 (546)
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcC
Confidence            9987432111111010111112234556677899999999999999999999999999999986  799999997 9999


Q ss_pred             CCCchhhHhh--hcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          149 PDVGSSYYLS--RLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       149 p~~g~~~~l~--r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      |++|+..++.  +++| .+|.+++++|++++|+||+++||||++||++++
T Consensus       166 P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l  215 (546)
T TIGR03222       166 PGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQF  215 (546)
T ss_pred             CccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHH
Confidence            9999998887  6888 899999999999999999999999999998753

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.4e-41  Score=302.68  Aligned_cols=184  Identities=23%  Similarity=0.354  Sum_probs=163.4

Q ss_pred             ceEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986            9 IHVLVEE-RANSRTVILNRP-HVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         9 ~~v~~~~-~~~v~~i~l~~p-~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ..+.+++ +++|++|||||| ++.|++|.+++.+|.+++++++.|+++++|||+|.+ +.||+|.|++++......   .
T Consensus         5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~---~   81 (708)
T PRK11154          5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTA---Q   81 (708)
T ss_pred             ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCH---H
Confidence            3577787 789999999999 589999999999999999999999999999999875 899999999987532111   1


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCcccccccCCCchhhHhhhcch-
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      ....+.+..+++++++.++||||||+|||+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|+|++| 
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~  161 (708)
T PRK11154         82 EAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGV  161 (708)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCH
Confidence            12234445567888999999999999999999999999999999999986  599999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ..|.+|+++|++++|+||+++||||+++|++++
T Consensus       162 ~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l  194 (708)
T PRK11154        162 STALDMILTGKQLRAKQALKLGLVDDVVPHSIL  194 (708)
T ss_pred             HHHHHHHHhCCcCCHHHHHHCCCCcEecChHHH
Confidence            999999999999999999999999999998753

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=3.4e-41  Score=301.13  Aligned_cols=179  Identities=22%  Similarity=0.352  Sum_probs=159.8

Q ss_pred             EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCceeccccchhHHHhhhcccHHHHHHHH
Q 041986           14 EERANSRTVILNRP-HVLNALNTSMVALLTKQYESWENNSGVDFVVI-KGNGRSFCAGGDVVGAYRMLKEGRVEECKELF   91 (195)
Q Consensus        14 ~~~~~v~~i~l~~p-~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl-~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~   91 (195)
                      +.+++|++|||||| ++.|++|.+++.+|.++|+.++.|+++++||| +|.|+.||+|.|++++.....   ......+.
T Consensus         6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~---~~~~~~~~   82 (699)
T TIGR02440         6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQT---AGEAKALA   82 (699)
T ss_pred             EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCC---hhHHHHHH
Confidence            45789999999999 68999999999999999999999999999986 567899999999998753211   12223444


Q ss_pred             HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986           92 RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL  168 (195)
Q Consensus        92 ~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l  168 (195)
                      +..++++.++.++||||||+|||+|+|||++|+++||+||++++  ++|++||+++|++|++|++++++|++| ..+.++
T Consensus        83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l  162 (699)
T TIGR02440        83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM  162 (699)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence            55677888999999999999999999999999999999999986  799999999999999999999999999 999999


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++|++++|+||+++||||+++|++++
T Consensus       163 lltG~~~~a~eA~~~GLV~~vv~~~~l  189 (699)
T TIGR02440       163 ILTGKQLRAKQALKLGLVDDVVPQSIL  189 (699)
T ss_pred             HHcCCcCCHHHHHhCCCCcEecChhHH
Confidence            999999999999999999999998763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=7.5e-41  Score=289.30  Aligned_cols=182  Identities=17%  Similarity=0.155  Sum_probs=158.0

Q ss_pred             eEEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCCc-eeccccchh
Q 041986           10 HVLVEERANSRTVILNRPHVL-------------NALNTSMVALLTKQYESWEN-NSGVDFVVIKGNGRS-FCAGGDVVG   74 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~~-------------N~~~~~~~~~l~~~l~~~~~-~~~~~~vvl~~~g~~-F~~G~dl~~   74 (195)
                      .+.++++++|++||||||++.             |+++.+++.+|.+++++++. |+++++|||||.|+. ||+|.|+..
T Consensus       259 ~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~  338 (546)
T TIGR03222       259 DVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALL  338 (546)
T ss_pred             EEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccc
Confidence            455667899999999999988             99999999999999999984 599999999999987 999999984


Q ss_pred             HHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-cchhcchh-hHHhhhcCEEEE-------eCCeEEecCcccc
Q 041986           75 AYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM-DGITMGGG-AGIAVHASYRLA-------TEKTVFAMPEVLI  145 (195)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav-~G~~~g~G-~~l~l~~D~~ia-------~~~a~~~~pe~~~  145 (195)
                      .. ..  ... .........++++.++..+|||+||+| ||+|+||| ++|+++||++|+       +++++|++||+++
T Consensus       339 ~~-~~--~~~-~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~l  414 (546)
T TIGR03222       339 EA-HK--DHW-FVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNF  414 (546)
T ss_pred             cc-cc--cch-hHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcccc
Confidence            21 11  110 112222334567888999999999999 89999999 999999999999       8999999999999


Q ss_pred             cccCCCchhhHhhhcc-h-HHH--HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          146 GFHPDVGSSYYLSRLP-G-HLG--EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       146 G~~p~~g~~~~l~r~~-g-~~a--~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      |++|++|++++|+|++ | .++  .+++++|++++|+||+++|||++++|++++
T Consensus       415 Gl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l  468 (546)
T TIGR03222       415 GLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDW  468 (546)
T ss_pred             ccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHH
Confidence            9999999999999998 8 788  559999999999999999999999998753

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.2e-40  Score=288.83  Aligned_cols=191  Identities=16%  Similarity=0.197  Sum_probs=161.1

Q ss_pred             CCCCcceEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCC-Cceecccc
Q 041986            4 KQSSQIHVLVEERANSRTVILNRP-------H---VLNALNTSMVALLTKQYESWE-NNSGVDFVVIKGNG-RSFCAGGD   71 (195)
Q Consensus         4 ~~~~~~~v~~~~~~~v~~i~l~~p-------~---~~N~~~~~~~~~l~~~l~~~~-~~~~~~~vvl~~~g-~~F~~G~d   71 (195)
                      +.++++++.++++++|++||||||       +   +.|+++.+++.+|.++++.++ .|+++++|||||.+ +.||+|.|
T Consensus        10 ~~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D   89 (550)
T PRK08184         10 EPSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN   89 (550)
T ss_pred             CCCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence            345788999999999999999965       3   889999999999999999998 68999999999985 89999999


Q ss_pred             chhHHHhhhcccHHHHHHHH-HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCccc-ccc
Q 041986           72 VVGAYRMLKEGRVEECKELF-RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVL-IGF  147 (195)
Q Consensus        72 l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~-~G~  147 (195)
                      ++.+......... ...... +....+.+.+.++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|+
T Consensus        90 L~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl  168 (550)
T PRK08184         90 IFMLGGSSHAWKV-NFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV  168 (550)
T ss_pred             HHhHhccccchhh-hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence            9987532111111 011111 11223455677899999999999999999999999999999987  899999997 999


Q ss_pred             cCCCchhhHhh--hcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          148 HPDVGSSYYLS--RLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       148 ~p~~g~~~~l~--r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +|++|+.++++  +++| ..+.+++++|++++|+||+++||||++||++++
T Consensus       169 ~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l  219 (550)
T PRK08184        169 LPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKF  219 (550)
T ss_pred             CCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHH
Confidence            99999999998  6789 889999999999999999999999999998753

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-40  Score=257.38  Aligned_cols=190  Identities=26%  Similarity=0.375  Sum_probs=172.8

Q ss_pred             CCcceEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            6 SSQIHVLVEERANSRTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~-~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      +.+..+.+++++++++|.++ ||++.|+++.+++.++.++|+.+..|+++..++++|.|++||+|.|+..+......+..
T Consensus         4 ~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~   83 (266)
T KOG0016|consen    4 MRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN   83 (266)
T ss_pred             ccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence            35668899999999999999 99999999999999999999999999999999999999999999999998877655443


Q ss_pred             HH---HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcc
Q 041986           85 EE---CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP  161 (195)
Q Consensus        85 ~~---~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~  161 (195)
                      ..   ..+....+..+++.+..+|||+||.||||++|.|+.+...||+++|+|+++|..|++++|+.|.+++++.+|+++
T Consensus        84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im  163 (266)
T KOG0016|consen   84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM  163 (266)
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence            32   223344455688899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      | ..|.++++.|++++|+||++.|||++++|.+.+
T Consensus       164 G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf  198 (266)
T KOG0016|consen  164 GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETF  198 (266)
T ss_pred             chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHH
Confidence            9 899999999999999999999999999998653

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.2e-40  Score=288.70  Aligned_cols=185  Identities=17%  Similarity=0.116  Sum_probs=157.2

Q ss_pred             CcceEEE--EEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC-Cceecc
Q 041986            7 SQIHVLV--EERANSRTVILNRPHVL-------------NALNTSMVALLTKQYESWEN-NSGVDFVVIKGNG-RSFCAG   69 (195)
Q Consensus         7 ~~~~v~~--~~~~~v~~i~l~~p~~~-------------N~~~~~~~~~l~~~l~~~~~-~~~~~~vvl~~~g-~~F~~G   69 (195)
                      .+.++.+  +++++|++||||||++.             |++|.+|+.+|.+++++++. |+++|+|||||.| +.||+|
T Consensus       258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG  337 (550)
T PRK08184        258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA  337 (550)
T ss_pred             eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence            3444444  45689999999999977             79999999999999999986 7899999999999 599999


Q ss_pred             ccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc-chhcchh-hHHhhhcCEEEEe-------CCeEEec
Q 041986           70 GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD-GITMGGG-AGIAVHASYRLAT-------EKTVFAM  140 (195)
Q Consensus        70 ~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~-G~~~g~G-~~l~l~~D~~ia~-------~~a~~~~  140 (195)
                      .|++... ...  . ............++.++..+||||||+|| |+|+||| ++|+++||++|++       ++++|++
T Consensus       338 ~Dl~~~~-~~~--~-~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~  413 (550)
T PRK08184        338 ADATLLA-HKD--H-WLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL  413 (550)
T ss_pred             CChhhhc-ccc--h-HHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence            9987322 111  1 01112234455678889999999999997 9999999 9999999999999       9999999


Q ss_pred             CcccccccCCCchhhHhhhc-ch-HHHHHH--hhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          141 PEVLIGFHPDVGSSYYLSRL-PG-HLGEYL--GLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       141 pe~~~G~~p~~g~~~~l~r~-~g-~~a~~l--~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ||+++|++|++|++++|+|+ +| .++.++  +++|++++|+||+++||||++||++++
T Consensus       414 pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l  472 (550)
T PRK08184        414 SALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDW  472 (550)
T ss_pred             ccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHH
Confidence            99999999999999999988 69 888886  589999999999999999999998763

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-40  Score=249.07  Aligned_cols=181  Identities=24%  Similarity=0.384  Sum_probs=168.5

Q ss_pred             ceEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhccc
Q 041986            9 IHVLVEE----RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         9 ~~v~~~~----~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~   83 (195)
                      +.+.+++    +.+|..|-+|||.+.|+++..++++|.++|+.+..|+.+|+|++++.- +.||+|.|+++-...    +
T Consensus        27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M----s  102 (291)
T KOG1679|consen   27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM----S  102 (291)
T ss_pred             ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----C
Confidence            3555554    558999999999999999999999999999999999999999999986 899999999986543    3


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      +.+...+.+..+.++..+..+|.|+|+++.|.++|||++|+|+||+|++++++.|+++|.+++++|+.|++++|+|++| 
T Consensus       103 ~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~  182 (291)
T KOG1679|consen  103 PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV  182 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      ..+.++++|++.+++.||...||||++|..+
T Consensus       183 alaKELIftarvl~g~eA~~lGlVnhvv~qn  213 (291)
T KOG1679|consen  183 ALAKELIFTARVLNGAEAAKLGLVNHVVEQN  213 (291)
T ss_pred             HHHHhHhhhheeccchhHHhcchHHHHHhcC
Confidence            9999999999999999999999999999765

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=9.6e-40  Score=247.65  Aligned_cols=187  Identities=24%  Similarity=0.375  Sum_probs=165.7

Q ss_pred             CcceEEEE---EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh---
Q 041986            7 SQIHVLVE---ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK---   80 (195)
Q Consensus         7 ~~~~v~~~---~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~---   80 (195)
                      +++...+.   .+..|..+.+|||.+.|++|..++.|+.++++.+..|+++++|||+|.|+.||+|+|+..+.....   
T Consensus        17 s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~   96 (292)
T KOG1681|consen   17 SYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP   96 (292)
T ss_pred             ccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc
Confidence            35544444   245799999999999999999999999999999999999999999999999999999877654311   


Q ss_pred             -c----ccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhh
Q 041986           81 -E----GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSY  155 (195)
Q Consensus        81 -~----~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~  155 (195)
                       .    ......+++...+++-+..+.+||||+|++++|.|+|+|..|..+||+|+|++++.|+.-|+.+|+..+.|...
T Consensus        97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~  176 (292)
T KOG1681|consen   97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN  176 (292)
T ss_pred             ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence             1    11234566667778888899999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhcch--HHHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986          156 YLSRLPG--HLGEYLGLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       156 ~l~r~~g--~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      |||+.+|  +.++++.+|++.|+|.||++.|||.+|+|+.
T Consensus       177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk  216 (292)
T KOG1681|consen  177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDK  216 (292)
T ss_pred             hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence            9999999  6789999999999999999999999999874

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=9.8e-39  Score=240.56  Aligned_cols=188  Identities=22%  Similarity=0.326  Sum_probs=164.2

Q ss_pred             CCcceEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--C-CceeccccchhHHHhhhc
Q 041986            6 SSQIHVLVEER-ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN--G-RSFCAGGDVVGAYRMLKE   81 (195)
Q Consensus         6 ~~~~~v~~~~~-~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~--g-~~F~~G~dl~~~~~~~~~   81 (195)
                      ..++.|.+++. ++++.|+||||+.+|++.+..+.|+.++|+.++.|+++.+|+|||.  | +.||+|.|-+.-..+..-
T Consensus        15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY   94 (282)
T COG0447          15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY   94 (282)
T ss_pred             CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence            36889999998 9999999999999999999999999999999999999999999986  5 799999998754332110


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcc
Q 041986           82 GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP  161 (195)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~  161 (195)
                      .+.+...+  -+..++-+.|..+|||+||.|+|+++|||-.|-+.||+.|+++++.|++...++|-+-++.++..|.|++
T Consensus        95 ~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V  172 (282)
T COG0447          95 VDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV  172 (282)
T ss_pred             cCCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence            00011111  2455677788899999999999999999999999999999999999999999999998888888999999


Q ss_pred             h-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      | +.|+++-+.++.++|+||+++|+||.|||.++|
T Consensus       173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~L  207 (282)
T COG0447         173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADL  207 (282)
T ss_pred             hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHH
Confidence            9 999999999999999999999999999998764

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-35  Score=237.32  Aligned_cols=193  Identities=52%  Similarity=0.875  Sum_probs=182.9

Q ss_pred             CCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhc
Q 041986            3 LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKE   81 (195)
Q Consensus         3 ~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~   81 (195)
                      ...+..+.|.++..+....||||||+..|++|.+|+.++.-.|...+.++.+++||+.|.+ +.||+|+|+........+
T Consensus        32 ~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d  111 (401)
T KOG1684|consen   32 VSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKD  111 (401)
T ss_pred             cccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhc
Confidence            4455667899999999999999999999999999999999999999999999999999996 999999999988777777


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcc
Q 041986           82 GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP  161 (195)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~  161 (195)
                      +.....+.++..-..+...+.++.||.||.++|..+|||+.|+..--||||+|++.|..||..+|++|+.|+++.++|+.
T Consensus       112 ~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlp  191 (401)
T KOG1684|consen  112 KETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLP  191 (401)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCc
Confidence            77778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          162 GHLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       162 g~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      |..+.++.|||+++++.||+.+||..+.||+++|
T Consensus       192 g~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l  225 (401)
T KOG1684|consen  192 GYLGLYLGLTGQRLSGADALRCGLATHYVPSEKL  225 (401)
T ss_pred             cHHHHhhhhccceecchHHHHhcchhhccchhhh
Confidence            9999999999999999999999999999999875

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=5e-34  Score=213.47  Aligned_cols=182  Identities=23%  Similarity=0.351  Sum_probs=161.8

Q ss_pred             eEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHH
Q 041986           10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE   89 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (195)
                      ..+++.+++|-.|++++|++.|+++.+|+.+|.+.|.....+.++|+|||+..|+.||+|.|++++.....   .+.-.+
T Consensus        33 ~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g---~d~hae  109 (287)
T KOG1682|consen   33 LGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPG---SDIHAE  109 (287)
T ss_pred             ccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCcc---chHHHH
Confidence            34556678999999999999999999999999999999888889999999999999999999999875432   234457


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986           90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL  168 (195)
Q Consensus        90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l  168 (195)
                      .++.+-+++.-|.++|+|+|+-|||.+..+|+.|..+||++++++++.|..|...+|++=.. ...-+.|.++ ..+.+|
T Consensus       110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCST-PGvAlaRavpRkva~~M  188 (287)
T KOG1682|consen  110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCST-PGVALARAVPRKVAAYM  188 (287)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecC-cchhHhhhcchhHHHHH
Confidence            77888899999999999999999999999999999999999999999999999999986211 1244688888 889999


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++||++++++||+..|||.++||.+++
T Consensus       189 L~Tg~Pi~~eeAl~sGlvskvVp~~el  215 (287)
T KOG1682|consen  189 LMTGLPITGEEALISGLVSKVVPAEEL  215 (287)
T ss_pred             HHhCCCCchHHHHHhhhhhhcCCHHHH
Confidence            999999999999999999999999875

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.87  E-value=1.9e-21  Score=148.73  Aligned_cols=145  Identities=17%  Similarity=0.128  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986           20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY   99 (195)
Q Consensus        20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (195)
                      +.|.++.     .++......+.++|+.++.++ ++.|+|.=+    |.|+++..-.                   .+.+
T Consensus         2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~~-------------------~i~~   52 (187)
T cd07020           2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDSTR-------------------EIVQ   52 (187)
T ss_pred             EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHHH-------------------HHHH
Confidence            4555643     356677788999999998654 888888754    6777665321                   3455


Q ss_pred             HHhhCCCcEEEEEc---chhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCC--------------chhhHhhhcch
Q 041986          100 LVATYSKPHVAIMD---GITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDV--------------GSSYYLSRLPG  162 (195)
Q Consensus       100 ~l~~~~~p~Iaav~---G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~--------------g~~~~l~r~~g  162 (195)
                      ++..+|||+|++++   |+|.|+|+.++++||++++++++.|+.+++..+..+..              .....+++..|
T Consensus        53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G  132 (187)
T cd07020          53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG  132 (187)
T ss_pred             HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            66789999999999   99999999999999999999999999999885544432              23446777777


Q ss_pred             -H--HHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986          163 -H--LGEYLGLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       163 -~--~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                       .  .+++++++|+.|+++||+++||+|++++++
T Consensus       133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~  166 (187)
T cd07020         133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL  166 (187)
T ss_pred             CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence             3  678999999999999999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.86  E-value=1.1e-21  Score=148.78  Aligned_cols=139  Identities=17%  Similarity=0.079  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986           36 SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI  115 (195)
Q Consensus        36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~  115 (195)
                      ..+.+|.++++++++|+++++|||++    +|.|.|+....                .+.+++..+..++||+||+++|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~   81 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGN   81 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCc
Confidence            45689999999999999999999998    68888876421                23345667778999999999999


Q ss_pred             hcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhh--------Hhhhcch---HHHHHHhhcCCCCCHHHHHhcC
Q 041986          116 TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSY--------YLSRLPG---HLGEYLGLTGATLSGEEMLFCG  184 (195)
Q Consensus       116 ~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~--------~l~r~~g---~~a~~l~l~g~~~~a~ea~~~G  184 (195)
                      |.|+|+.++++||++++++.+.|+.+.+..+.-+......        .+++..|   ....+++..|..++|++|++.|
T Consensus        82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G  161 (177)
T cd07014          82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG  161 (177)
T ss_pred             hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence            9999999999999999999999999987665332211111        3333333   3467888899999999999999


Q ss_pred             ccccccCCCC
Q 041986          185 LATHYSLSAV  194 (195)
Q Consensus       185 lv~~vv~~~~  194 (195)
                      |||++.+.++
T Consensus       162 LVD~v~~~~e  171 (177)
T cd07014         162 LVDSLGSFDD  171 (177)
T ss_pred             CcccCCCHHH
Confidence            9999998664

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.73  E-value=5.9e-17  Score=126.12  Aligned_cols=87  Identities=20%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc
Q 041986           34 NTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD  113 (195)
Q Consensus        34 ~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~  113 (195)
                      +...+.+|.++|+.++.|+++++|||+    .||.|.|+....                .+.+.++.+..++||+|++++
T Consensus        19 ~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~----------------~~~~~l~~~~~~~kpVia~v~   78 (211)
T cd07019          19 GNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE----------------VIRAELAAARAAGKPVVVSAG   78 (211)
T ss_pred             CccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEEC
Confidence            455689999999999999999999998    589999997642                122345567788999999999


Q ss_pred             chhcchhhHHhhhcCEEEEeCCeEEec
Q 041986          114 GITMGGGAGIAVHASYRLATEKTVFAM  140 (195)
Q Consensus       114 G~~~g~G~~l~l~~D~~ia~~~a~~~~  140 (195)
                      |.|.|+|+.|+++||.+++++.+.++.
T Consensus        79 g~a~s~gy~la~~aD~i~a~~~a~~gs  105 (211)
T cd07019          79 GAAASGGYWISTPANYIVANPSTLTGS  105 (211)
T ss_pred             CeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence            999999999999999999999988864

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.69  E-value=6.2e-16  Score=115.44  Aligned_cols=134  Identities=19%  Similarity=0.167  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++..+..+|.+.|+.++.|++++.|+|..    .|.|.++...                   ..+.+.+..++||+|+.+
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~   64 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-------------------MNIVDALQASRKPVIAYV   64 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence            45678899999999999999999999987    4777766432                   234456677889999999


Q ss_pred             cchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhh------H----hhhc---------ch-HHHHHHhhcC
Q 041986          113 DGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSY------Y----LSRL---------PG-HLGEYLGLTG  172 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~------~----l~r~---------~g-~~a~~l~l~g  172 (195)
                      +|.|.++|+.|+++||.|++.+++.|++..+..+.....+...      .    ..+.         .. ....+.+..+
T Consensus        65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~  144 (161)
T cd00394          65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD  144 (161)
T ss_pred             CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence            9999999999999999999999999999887655442210011      1    1111         12 2345667789


Q ss_pred             CCCCHHHHHhcCccccc
Q 041986          173 ATLSGEEMLFCGLATHY  189 (195)
Q Consensus       173 ~~~~a~ea~~~Glv~~v  189 (195)
                      ..++++||++.||||++
T Consensus       145 ~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         145 LVLTAQEALEYGLVDAL  161 (161)
T ss_pred             cEEcHHHHHHcCCcCcC
Confidence            99999999999999985

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.64  E-value=2.3e-15  Score=117.50  Aligned_cols=96  Identities=20%  Similarity=0.170  Sum_probs=73.4

Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhC
Q 041986           26 RPHVLNA-LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATY  104 (195)
Q Consensus        26 ~p~~~N~-~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  104 (195)
                      +|...|. ++..++.+|.++|++++.|+++++|||+.    +|.|.++...                ..+.+.+..+.. 
T Consensus        14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~-   72 (214)
T cd07022          14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA-   72 (214)
T ss_pred             CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc-
Confidence            4443443 45688999999999999999999999986    4666665432                112223333334 


Q ss_pred             CCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCc
Q 041986          105 SKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPE  142 (195)
Q Consensus       105 ~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe  142 (195)
                      +||+||+++|.|.|+|+.++++||.+++++.+.|+...
T Consensus        73 ~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG  110 (214)
T cd07022          73 GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIG  110 (214)
T ss_pred             CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeee
Confidence            69999999999999999999999999999999886543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.61  E-value=5.1e-15  Score=130.49  Aligned_cols=157  Identities=20%  Similarity=0.209  Sum_probs=115.9

Q ss_pred             EEeCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHH
Q 041986           14 EERANSRTVILNRPHV--LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELF   91 (195)
Q Consensus        14 ~~~~~v~~i~l~~p~~--~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~   91 (195)
                      +.++.|+.|.++.+-.  .+..+....+.+.+.|++++.|+++|+|||+-+    |.|++....                
T Consensus       305 ~~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------  364 (584)
T TIGR00705       305 DVQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------  364 (584)
T ss_pred             CCCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------
Confidence            3567899999986642  233333445678899999999999999999986    445544321                


Q ss_pred             HHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEE------ecCc------ccccccCCCchhhHhhh
Q 041986           92 RTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF------AMPE------VLIGFHPDVGSSYYLSR  159 (195)
Q Consensus        92 ~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~------~~pe------~~~G~~p~~g~~~~l~r  159 (195)
                      +.+.+.+.++...+||+|+.++|.|.+||+.++++||.+++++.+.+      +.+.      .++|+.|....+..+++
T Consensus       365 e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~  444 (584)
T TIGR00705       365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELAN  444 (584)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCC
Confidence            01122333455678999999999999999999999999999998876      5442      46888876655544432


Q ss_pred             ----------------------------cch-HH-----HHHHhhcCCCCCHHHHHhcCcccccc
Q 041986          160 ----------------------------LPG-HL-----GEYLGLTGATLSGEEMLFCGLATHYS  190 (195)
Q Consensus       160 ----------------------------~~g-~~-----a~~l~l~g~~~~a~ea~~~Glv~~vv  190 (195)
                                                  .++ .+     +.+.+..|+.++++||+++||||++-
T Consensus       445 ~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig  509 (584)
T TIGR00705       445 VSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG  509 (584)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC
Confidence                                        333 22     56778899999999999999999984

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.61  E-value=1.6e-14  Score=112.28  Aligned_cols=101  Identities=22%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |+.|.++.+-...  .+.++.+|.++|+.++.|+++++|+|++    +|.|.|+....                .+.+.+
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~----------------~i~~~i   59 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE----------------EIYREI   59 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH----------------HHHHHH
Confidence            4566665432111  3678999999999999999999999999    58888886521                123355


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP  141 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p  141 (195)
                      +.+..++||+||+++|.|.|+|+.++++||.+++++.+.|+..
T Consensus        60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i  102 (208)
T cd07023          60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI  102 (208)
T ss_pred             HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence            6677889999999999999999999999999999999988643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.59  E-value=1.2e-14  Score=108.44  Aligned_cols=128  Identities=14%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986           36 SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI  115 (195)
Q Consensus        36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~  115 (195)
                      ...+.+.+.|+.++.++.+ .+.|.+      .|+++..                   ...+.+.+..+|||+++.++|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~ins------pGG~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~   68 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINS------PGGDVFA-------------------GLAIYNALKRHKGKVTVKIDGL   68 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEEC------CCCCHHH-------------------HHHHHHHHHhcCCCEEEEEcch
Confidence            4667788888888776333 333444      4444322                   1235566778899999999999


Q ss_pred             hcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCch---------------hhHhhhcch---HHHHHHhhcCCCCCH
Q 041986          116 TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGS---------------SYYLSRLPG---HLGEYLGLTGATLSG  177 (195)
Q Consensus       116 ~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~---------------~~~l~r~~g---~~a~~l~l~g~~~~a  177 (195)
                      |.++|+.++++||.|++++++.|.++....+..+....               ...+.+..|   ....+++..+..+++
T Consensus        69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a  148 (160)
T cd07016          69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA  148 (160)
T ss_pred             HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence            99999999999999999999999997776555433211               222555556   234666666778999


Q ss_pred             HHHHhcCccccc
Q 041986          178 EEMLFCGLATHY  189 (195)
Q Consensus       178 ~ea~~~Glv~~v  189 (195)
                      +||+++||||+|
T Consensus       149 ~eA~~~GliD~v  160 (160)
T cd07016         149 QEAVELGFADEI  160 (160)
T ss_pred             HHHHHcCCCCcC
Confidence            999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.53  E-value=1.1e-13  Score=107.52  Aligned_cols=94  Identities=20%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |++|.++.+=.      ....+|.++|+.++.|+++++|||+..    |.|+++...                   .++.
T Consensus         2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~   52 (207)
T TIGR00706         2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY   52 (207)
T ss_pred             EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence            56666655431      335789999999999999999999984    777777532                   1233


Q ss_pred             HHHhhCC--CcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC
Q 041986           99 YLVATYS--KPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP  141 (195)
Q Consensus        99 ~~l~~~~--~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p  141 (195)
                      +.+..++  ||+|+.++|.|.++|+.++++||.+++++++.++.-
T Consensus        53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~i   97 (207)
T TIGR00706        53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSI   97 (207)
T ss_pred             HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEee
Confidence            4455555  999999999999999999999999999999877663

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.51  E-value=6.7e-13  Score=100.51  Aligned_cols=140  Identities=21%  Similarity=0.302  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986           20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY   99 (195)
Q Consensus        20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (195)
                      ..|.++.     .+++...+.|.++|+++++++ ++.|++.=+    |.|+++..                   ...+.+
T Consensus         2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~~   52 (178)
T cd07021           2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIVD   52 (178)
T ss_pred             EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHHH
Confidence            4455543     356778888999999999875 788888775    66766653                   223556


Q ss_pred             HHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCch--------hhH------hhhcch---
Q 041986          100 LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGS--------SYY------LSRLPG---  162 (195)
Q Consensus       100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~--------~~~------l~r~~g---  162 (195)
                      .+..+|+|+|+.|+|.|.++|+.++++||++++++++.++.+++-    +..+.        ...      +.+.-|   
T Consensus        53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~  128 (178)
T cd07021          53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDP  128 (178)
T ss_pred             HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence            778899999999999999999999999999999999999998543    22222        111      122222   


Q ss_pred             HHHHHHhhcC-------------CCCCHHHHHhcCccccccCC
Q 041986          163 HLGEYLGLTG-------------ATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       163 ~~a~~l~l~g-------------~~~~a~ea~~~Glv~~vv~~  192 (195)
                      ..+..|+-..             ..++++||++.|++|.+.++
T Consensus       129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence            2344554444             37999999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.41  E-value=1.3e-12  Score=102.41  Aligned_cols=90  Identities=14%  Similarity=0.055  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      -+...+.+|.++|+.++.|+++++|||+..+..| ++.+++++                   .+.++.+...+||+||.+
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~~   85 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAYA   85 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEEe
Confidence            3567788999999999999999999999987666 55555543                   223344556799999999


Q ss_pred             cchhcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986          113 DGITMGGGAGIAVHASYRLATEKTVFAMPEV  143 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~  143 (195)
                      +| +.++|+.++++||.+++.+.+.++...+
T Consensus        86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv  115 (222)
T cd07018          86 DG-YSQGQYYLASAADEIYLNPSGSVELTGL  115 (222)
T ss_pred             CC-CCchhhhhhhhCCEEEECCCceEEeecc
Confidence            98 8899999999999999999999888543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.16  E-value=1.1e-09  Score=82.23  Aligned_cols=137  Identities=15%  Similarity=0.212  Sum_probs=102.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .+++...+.|.++++.++++ +.+.|+|.=+    |.|+.+...                   ..+.+.+...++||++.
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~~i~~~~~pvv~~   64 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQRIQQSKIPVIIY   64 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCcCEEEE
Confidence            36677888899999999864 5888888876    777777542                   12455666789999999


Q ss_pred             Ec---chhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCc--h------hhH------hhhcch---HHHHHHhhc
Q 041986          112 MD---GITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVG--S------SYY------LSRLPG---HLGEYLGLT  171 (195)
Q Consensus       112 v~---G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g--~------~~~------l~r~~g---~~a~~l~l~  171 (195)
                      |+   |.|..+|..++++||.+++.+++.++...+-.+..+...  .      ...      +.+.-|   ..+.+++..
T Consensus        65 v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~  144 (172)
T cd07015          65 VYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITK  144 (172)
T ss_pred             EecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHh
Confidence            99   999999999999999999999999999877543222000  0      111      112222   345667788


Q ss_pred             CCCCCHHHHHhcCccccccCC
Q 041986          172 GATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       172 g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      ...++++||++.|++|.++++
T Consensus       145 ~~~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         145 DLSLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             hcCcCHHHHHHcCCceeeeCC
Confidence            889999999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.00  E-value=9.8e-09  Score=76.71  Aligned_cols=132  Identities=16%  Similarity=0.089  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++..+..++.+.|..++.++..+.|+|.=+    |.|+++..                   ...+.+.+...++|+++.+
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~   65 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII   65 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence            467888999999999998877778777765    66666532                   2235556667889999999


Q ss_pred             cchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhh-----------------Hhhhcch---HHHHHHhh
Q 041986          113 DGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSY-----------------YLSRLPG---HLGEYLGL  170 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~-----------------~l~r~~g---~~a~~l~l  170 (195)
                      .|.|.++|..+++++|  .|++.+++.+.+....-+..  +...-                 .+.+.-|   ....+++-
T Consensus        66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~--g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~  143 (162)
T cd07013          66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL--GDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE  143 (162)
T ss_pred             EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            9999999999999999  68888888887654322211  10110                 1111112   22234455


Q ss_pred             cCCCCCHHHHHhcCccccc
Q 041986          171 TGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       171 ~g~~~~a~ea~~~Glv~~v  189 (195)
                      .+..++++||++.||||++
T Consensus       144 ~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         144 RDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             CCccccHHHHHHcCCCCcC
Confidence            5666799999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.94  E-value=2.1e-08  Score=77.39  Aligned_cols=136  Identities=19%  Similarity=0.121  Sum_probs=88.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++..+...+...|..++.++..+-|.+.=+    |.|++...                   ...+.+.+...+.|+++.
T Consensus        39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-------------------g~~I~d~i~~~~~~v~t~   95 (200)
T PRK00277         39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTMQFIKPDVSTI   95 (200)
T ss_pred             EECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCEEEE
Confidence            4678889999999998876544444444443    45555432                   222444566778899999


Q ss_pred             EcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhh------------------Hhhhcch---HHHHHH
Q 041986          112 MDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSY------------------YLSRLPG---HLGEYL  168 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~------------------~l~r~~g---~~a~~l  168 (195)
                      +.|.|.+.|..++++++  .|++.+++.+.+....-+.   .|-..                  .+...-|   ....++
T Consensus        96 ~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~  172 (200)
T PRK00277         96 CIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKD  172 (200)
T ss_pred             EEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999988743  5777777766665443111   11111                  1122222   233445


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      +-.+..++|+||++.||+|+|+.+.
T Consensus       173 ~~~~~~lsa~EA~e~GliD~Ii~~~  197 (200)
T PRK00277        173 TDRDNFMSAEEAKEYGLIDEVLTKR  197 (200)
T ss_pred             hhCCccccHHHHHHcCCccEEeecC
Confidence            5667789999999999999999763

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.88  E-value=1.3e-07  Score=75.36  Aligned_cols=137  Identities=15%  Similarity=0.090  Sum_probs=95.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      .-+++++-.+...+.++.+.. .++-+|-|.-.++.+. |.+.+.             ....+.+.+.+..+...++|+|
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~-~~lPvV~lvDtpGa~~-g~~aE~-------------~G~~~~ia~~~~~~s~~~VP~I  140 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEK-FGRPVVTFINTAGAYP-GVGAEE-------------RGQGEAIARNLMEMSDLKVPII  140 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCCcCC-CHhHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence            456788888889888888876 3567776655443332 322210             1233455666777889999999


Q ss_pred             EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch--HHHHHHhhcCCCCCHHHHHhcCccc
Q 041986          110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG--HLGEYLGLTGATLSGEEMLFCGLAT  187 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g--~~a~~l~l~g~~~~a~ea~~~Glv~  187 (195)
                      +.|-|.|.|||......||++++.+++.++.       .++-|++..+-+-..  ..+.+.+    .+++.++.+.|+||
T Consensus       141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD  209 (256)
T PRK12319        141 AIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVD  209 (256)
T ss_pred             EEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCc
Confidence            9999999999888888999999999887765       222333433333212  3333333    77999999999999


Q ss_pred             cccCC
Q 041986          188 HYSLS  192 (195)
Q Consensus       188 ~vv~~  192 (195)
                      +|+|+
T Consensus       210 ~ii~e  214 (256)
T PRK12319        210 KVIPE  214 (256)
T ss_pred             EecCC
Confidence            99975

>PRK10949 protease 4; Provisional

Probab=98.87  E-value=1.1e-07  Score=84.67  Aligned_cols=102  Identities=20%  Similarity=0.247  Sum_probs=73.7

Q ss_pred             eCCEEEEEEcCCC-----CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           16 RANSRTVILNRPH-----VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        16 ~~~v~~i~l~~p~-----~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      .+.|+.|.++.+=     ....++.   +.+.+.|+++..|+++|+|||+-+    |.|+.....               
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~as---------------  382 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTAS---------------  382 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHHH---------------
Confidence            5678888886432     1223443   568888999999999999999997    555544321               


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEec
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM  140 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~  140 (195)
                       +.+.+.+.++....||+|+.+.+.|..||+.++++||.+++.+.+..+.
T Consensus       383 -e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGS  431 (618)
T PRK10949        383 -EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGS  431 (618)
T ss_pred             -HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceee
Confidence             1222233344567899999999999999999999999999998665443

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.87  E-value=5.6e-08  Score=75.43  Aligned_cols=136  Identities=15%  Similarity=0.067  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++..+..++.+.|..++..+..+.|.|.-+    |.|+++..                   ...+.+.+...+.|+++.
T Consensus        43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~-------------------g~~I~d~i~~~~~~v~t~   99 (207)
T PRK12553         43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTA-------------------GDAIYDTIQFIRPDVQTV   99 (207)
T ss_pred             eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHH-------------------HHHHHHHHHhcCCCcEEE
Confidence            4688999999999999987554455544443    56666543                   123555666788899999


Q ss_pred             EcchhcchhhHHhhhcC--EEEEeCCeEEecCcccc-cccCCCchh------------------hHhhhcch---HHHHH
Q 041986          112 MDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLI-GFHPDVGSS------------------YYLSRLPG---HLGEY  167 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~-G~~p~~g~~------------------~~l~r~~g---~~a~~  167 (195)
                      +.|.|.+.|..++++||  .|++.+++.|.+.+... |.  ..|-.                  ..+.+.-|   ....+
T Consensus       100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~  177 (207)
T PRK12553        100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK  177 (207)
T ss_pred             EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999999  58999999999877542 21  11211                  11222223   23455


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      ++-.+..++|+||++.||||+|+++
T Consensus       178 ~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        178 DTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHhcCccccHHHHHHcCCccEEcCc
Confidence            6667889999999999999999975

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.84  E-value=2.6e-07  Score=75.52  Aligned_cols=139  Identities=9%  Similarity=0.028  Sum_probs=94.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      .-+++++-.....+.++.++. .++-+|-|--+.+.++ |.+.++             ....+.+.+.+..+....+|+|
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~-f~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I  196 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANK-FGLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII  196 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence            456889999999999998876 3566665555433332 322211             1233455566667788999999


Q ss_pred             EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986          110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~ea~~~Glv~~v  189 (195)
                      +.|-|.+.|||+.....||++++.++++++.       .++-|.+..+-+-- .++.+ +....+++|+++++.|+||+|
T Consensus       197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d~-~~a~~-aA~~~~ita~dL~~~giiD~i  267 (322)
T CHL00198        197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKDS-KKSLD-AAEALKITSEDLKVLGIIDEI  267 (322)
T ss_pred             EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcch-hhHHH-HHHHcCCCHHHHHhCCCCeEe
Confidence            9999999888876666799999999988765       22233443333321 22222 234568999999999999999


Q ss_pred             cCC
Q 041986          190 SLS  192 (195)
Q Consensus       190 v~~  192 (195)
                      +|.
T Consensus       268 i~E  270 (322)
T CHL00198        268 IPE  270 (322)
T ss_pred             ccC
Confidence            985

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.81  E-value=9.9e-10  Score=90.03  Aligned_cols=169  Identities=14%  Similarity=0.043  Sum_probs=138.4

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHHHH
Q 041986           18 NSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYS   96 (195)
Q Consensus        18 ~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~   96 (195)
                      ++..+.++ |+ .|..|.++.++|..-++.++.+..+++..+|+.. +.|++|.|..+.......-.+    ...-+..+
T Consensus        66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fsp----a~~m~LlE  139 (380)
T KOG1683|consen   66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSP----AHWMQLLE  139 (380)
T ss_pred             ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCH----HHHHHHHH
Confidence            67778887 44 6999999999999999999998888999999998 999999999998766554333    44456677


Q ss_pred             HHHHHhhCCCcEEEEEcchhcchh--hHHhhhcCEEEEe--CCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhc
Q 041986           97 FVYLVATYSKPHVAIMDGITMGGG--AGIAVHASYRLAT--EKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLT  171 (195)
Q Consensus        97 l~~~l~~~~~p~Iaav~G~~~g~G--~~l~l~~D~~ia~--~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~  171 (195)
                      ++....+++.|+.+++||.+.-++  +.+.-+|+|++..  .....+..+...++.-+..-...+...+| ..+..-+--
T Consensus       140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d  219 (380)
T KOG1683|consen  140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALAD  219 (380)
T ss_pred             HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhh
Confidence            888899999999999999998888  8999999999987  56666788888885433334444555567 666666778


Q ss_pred             CCCCCHHHHHhcCccccccCC
Q 041986          172 GATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       172 g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      +.-++-.||++-|+++++.|.
T Consensus       220 ~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  220 GVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             ccCccHHHHHhhccchhccch
Confidence            889999999999999998873

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.79  E-value=7.2e-08  Score=72.69  Aligned_cols=132  Identities=19%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++.....++...|..+..++..+.|++.-+    |.|+++..-                   ..+.+.+...+.|+++.+
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~   74 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC   74 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence            577888999999999988766566666554    566665431                   124445556789999999


Q ss_pred             cchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhhH-----------------hhhcch---HHHHHHhh
Q 041986          113 DGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSYY-----------------LSRLPG---HLGEYLGL  170 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~~-----------------l~r~~g---~~a~~l~l  170 (195)
                      .|.|.+.|..+++++|  .|++.++++|.+.+...+..-.  ...+                 +....|   ....+++-
T Consensus        75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  152 (171)
T cd07017          75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD  152 (171)
T ss_pred             EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            9999999999999999  7999999999998765443211  1111                 111222   12344566


Q ss_pred             cCCCCCHHHHHhcCccccc
Q 041986          171 TGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       171 ~g~~~~a~ea~~~Glv~~v  189 (195)
                      .+.-++++||++.|++|+|
T Consensus       153 ~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         153 RDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CCccccHHHHHHcCCCccC
Confidence            7888999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.74  E-value=1.1e-07  Score=72.31  Aligned_cols=135  Identities=21%  Similarity=0.157  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++.++...+.+.|..++..+..+-+.|.=+    |.|+++..                   ...+.+.+..++.|+++.+
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN----SpGG~v~~-------------------g~~i~~~i~~~~~~v~t~~   81 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYIN----SPGGDVDA-------------------GLAIYDAIRSSKAPVTTVV   81 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE----ECEBCHHH-------------------HHHHHHHHHHSSSEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEc----CCCCccHH-------------------HHHHHHHHHhcCCCeEEEE
Confidence            588999999999888854333333322222    56677643                   2235667778999999999


Q ss_pred             cchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhhH-----------------hhhcch---HHHHHHhh
Q 041986          113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSYY-----------------LSRLPG---HLGEYLGL  170 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~-----------------l~r~~g---~~a~~l~l  170 (195)
                      .|.|.+.|..++++||.  |++.+++.|.+.++..+...  .....                 +....|   ....+++-
T Consensus        82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  159 (182)
T PF00574_consen   82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAERTGLSKEEIEELMD  159 (182)
T ss_dssp             EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCS
T ss_pred             eCccccceehhhhcCCcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence            99999999999999999  89999999999888654432  11111                 111112   12233444


Q ss_pred             cCCCCCHHHHHhcCccccccCC
Q 041986          171 TGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       171 ~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      ...-++++||++.|+||+|+.+
T Consensus       160 ~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  160 RDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             STEEEEHHHHHHHTSSSEEESS
T ss_pred             CCccccHHHHHHcCCCCEeccC
Confidence            5556899999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.72  E-value=9.5e-07  Score=72.20  Aligned_cols=137  Identities=9%  Similarity=0.008  Sum_probs=93.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      .-+++++-.....+.++.++. .++-+|-|.-..+.++ |.+.+.             ....+.+.+.+..+....+|+|
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~-f~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~I  193 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAER-FKMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVI  193 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEE
Confidence            456788888889888888876 4566666655433322 222221             1234456667777889999999


Q ss_pred             EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch--HHHHHHhhcCCCCCHHHHHhcCccc
Q 041986          110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG--HLGEYLGLTGATLSGEEMLFCGLAT  187 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g--~~a~~l~l~g~~~~a~ea~~~Glv~  187 (195)
                      +.|-|.|.|||......||++++.+++.++.       .++-|++..+-+-..  ..+.+    -..++++++.+.|+||
T Consensus       194 sVViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD  262 (316)
T TIGR00513       194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLID  262 (316)
T ss_pred             EEEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCe
Confidence            9999999777776556799999999887764       333334444433211  23333    2677899999999999


Q ss_pred             cccCC
Q 041986          188 HYSLS  192 (195)
Q Consensus       188 ~vv~~  192 (195)
                      +|+|.
T Consensus       263 ~II~e  267 (316)
T TIGR00513       263 SIIPE  267 (316)
T ss_pred             EeccC
Confidence            99985

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.71  E-value=3.7e-07  Score=70.26  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++..+...+.+.|..++..+..+-|.+.=+    |.|+++..                   ...+.+.+...+.||++.+
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a-------------------g~aI~d~i~~~~~~V~t~v   88 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA-------------------GFAIFNMIRFVKPKVFTIG   88 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhCCCCEEEEE
Confidence            677888899999988876334455555543    56666542                   2235556777899999999


Q ss_pred             cchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhhH------------------hhhcch---HHHHHHh
Q 041986          113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSYY------------------LSRLPG---HLGEYLG  169 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~------------------l~r~~g---~~a~~l~  169 (195)
                      .|.|.+.|..++++||-  |++.+++.+.+....-+..   |.+.-                  ....-|   ....+++
T Consensus        89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~  165 (197)
T PRK14512         89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDT  165 (197)
T ss_pred             EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhh
Confidence            99999999999999985  8999998887765432221   11110                  111112   2234455


Q ss_pred             hcCCCCCHHHHHhcCccccccCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      -....++|+||++.||+|+|+++
T Consensus       166 ~~d~~lta~EA~~yGliD~I~~~  188 (197)
T PRK14512        166 DRDFWLDSSSAVKYGLVFEVVET  188 (197)
T ss_pred             hcCcccCHHHHHHcCCccEeecC
Confidence            56678999999999999999975

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.71  E-value=8e-07  Score=72.72  Aligned_cols=139  Identities=10%  Similarity=0.050  Sum_probs=95.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      .-+++++-.+...+.++.++. -++-+|-|.-+.+.+. |.+.++             ....+.+.+.+..+....+|+|
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~-f~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I  193 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEK-FGLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII  193 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence            456788888888888888875 4577776665444333 332221             1234566667778889999999


Q ss_pred             EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986          110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~ea~~~Glv~~v  189 (195)
                      +.|-|.+.|||......||++++.+++.++.       .++-|++..+-+-.. .+.+.. ....++++++++.|+||+|
T Consensus       194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~~~-~a~~aa-e~~~ita~~l~~~g~iD~I  264 (319)
T PRK05724        194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKDAS-KAPEAA-EAMKITAQDLKELGIIDEI  264 (319)
T ss_pred             EEEeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcCch-hHHHHH-HHcCCCHHHHHHCCCceEe
Confidence            9999999888776666799999988887654       433444444444322 222222 2556899999999999999


Q ss_pred             cCC
Q 041986          190 SLS  192 (195)
Q Consensus       190 v~~  192 (195)
                      +|.
T Consensus       265 I~E  267 (319)
T PRK05724        265 IPE  267 (319)
T ss_pred             ccC
Confidence            985

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.71  E-value=1.1e-06  Score=73.88  Aligned_cols=137  Identities=12%  Similarity=0.058  Sum_probs=92.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      -+++++-.....+.++.++. .++-+|-|.-+.+.+ .|.+.++             ....+.+.+.+..+....+|+|+
T Consensus       200 G~~~peGyRKAlR~mklAek-f~lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS  264 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEK-FGFPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA  264 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence            46889999999999888876 356666555533332 2222221             23334566677778899999999


Q ss_pred             EEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986          111 IMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       111 av~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~v  189 (195)
                      .|-|.+.+||.....+||++++.+++.++.-      .|.+.++.++....- ..+.+    ...++++++++.|+||+|
T Consensus       265 VViGeGgSGGAlalg~aD~VlMle~A~ysVi------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~I  334 (431)
T PLN03230        265 TVIGEGGSGGALAIGCGNRMLMMENAVYYVA------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEI  334 (431)
T ss_pred             EEeCCCCcHHHHHhhcCCEEEEecCCEEEec------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEe
Confidence            9999996666555557899999998876542      233333333333222 33333    348999999999999999


Q ss_pred             cCC
Q 041986          190 SLS  192 (195)
Q Consensus       190 v~~  192 (195)
                      +|.
T Consensus       335 I~E  337 (431)
T PLN03230        335 VPE  337 (431)
T ss_pred             ccC
Confidence            985

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.65  E-value=1.8e-06  Score=76.87  Aligned_cols=139  Identities=12%  Similarity=0.013  Sum_probs=95.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      .-++++.-.+...+.++.++. ..+-+|-|--..+.+. |...+.             ....+.+.+.+..+....+|+|
T Consensus       220 fG~~~peGyRKAlRlmkLAek-fgLPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I  284 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV  284 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence            456778888888888888876 3566665555433332 322222             1233456667777889999999


Q ss_pred             EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986          110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~ea~~~Glv~~v  189 (195)
                      +.|-|.|.|||+.....||++++.++++++.       .++-|++..+-+-.. .+.+ +.....++|++++++|+||+|
T Consensus       285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV-------isPEgaAsILwkd~~-~A~e-AAe~lkiTa~dL~~lGiiD~I  355 (762)
T PLN03229        285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAK-AAPK-AAEKLRITAQELCRLQIADGI  355 (762)
T ss_pred             EEEeCCcchHHHHHhhcCCEEEEecCCeEEe-------cCHHHHHHHHhcCcc-cHHH-HHHHcCCCHHHHHhCCCCeee
Confidence            9999999888887777899999999877554       333334444433222 1122 234568999999999999999


Q ss_pred             cCC
Q 041986          190 SLS  192 (195)
Q Consensus       190 v~~  192 (195)
                      +|.
T Consensus       356 IpE  358 (762)
T PLN03229        356 IPE  358 (762)
T ss_pred             ccC
Confidence            985

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.61  E-value=1.4e-06  Score=67.16  Aligned_cols=137  Identities=13%  Similarity=0.051  Sum_probs=95.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++.++..++...|-.++.++..+-+.+.=+    |.|+++..                   ...+.+.+...+.|+.+.
T Consensus        38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv   94 (200)
T CHL00028         38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-------------------GLAIYDTMQFVKPDVHTI   94 (200)
T ss_pred             eecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence            4789999999999999875443444444333    45555432                   123555677889999999


Q ss_pred             EcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCch-hh-----------------Hhhhcch---HHHHHH
Q 041986          112 MDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGS-SY-----------------YLSRLPG---HLGEYL  168 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~-~~-----------------~l~r~~g---~~a~~l  168 (195)
                      +-|.|.+.|..+++++|  .|++.++++|.+.....|..  .|- ..                 .+...-|   ....++
T Consensus        95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~  172 (200)
T CHL00028         95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED  172 (200)
T ss_pred             EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999  69999999999877654421  121 11                 1111112   122444


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      +-....++|+||++.|+||+|+.+.
T Consensus       173 ~~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        173 MERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             hhcCccCCHHHHHHcCCCcEEeecC
Confidence            5566679999999999999999764

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.59  E-value=8e-07  Score=73.22  Aligned_cols=104  Identities=15%  Similarity=0.068  Sum_probs=69.0

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLY   95 (195)
Q Consensus        16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   95 (195)
                      .+.|+.|.++.+-..+ ....+.+++...++.+..+   +.|||+-+    |.|+.......            ...   
T Consensus        89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~------------a~~---  145 (330)
T PRK11778         89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL------------AAS---  145 (330)
T ss_pred             CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH------------HHH---
Confidence            4678889888654222 2224445666666555432   57888876    55655543110            001   


Q ss_pred             HHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986           96 SFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV  143 (195)
Q Consensus        96 ~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~  143 (195)
                       .+.++....||+++.+.+.|..||+.++++||.+++.+.+.++.-.+
T Consensus       146 -~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGV  192 (330)
T PRK11778        146 -QLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGV  192 (330)
T ss_pred             -HHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeee
Confidence             12345567899999999999999999999999999999876665433

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.58  E-value=2e-06  Score=65.95  Aligned_cols=136  Identities=17%  Similarity=0.081  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++.....++...|..++.++..+-+.+.=+    |.|+++..                   ...+.+.+...+.|+...+
T Consensus        35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------g~~I~d~l~~~~~~v~t~~   91 (191)
T TIGR00493        35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITA-------------------GLAIYDTMQFIKPDVSTIC   91 (191)
T ss_pred             EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            567788888888888876554444544443    55666532                   1224445556667777778


Q ss_pred             cchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhh---------------Hhhhcch---HHHHHHhhcC
Q 041986          113 DGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSY---------------YLSRLPG---HLGEYLGLTG  172 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~---------------~l~r~~g---~~a~~l~l~g  172 (195)
                      -|.|.+.|..+++++|  .|++.+++.|.+.+...|......-..               .+.+.-|   ....+++-.+
T Consensus        92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~  171 (191)
T TIGR00493        92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD  171 (191)
T ss_pred             EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence            8999999998888765  699999999999776433211100000               0122222   2334556677


Q ss_pred             CCCCHHHHHhcCccccccC
Q 041986          173 ATLSGEEMLFCGLATHYSL  191 (195)
Q Consensus       173 ~~~~a~ea~~~Glv~~vv~  191 (195)
                      ..++|+||++.||+|+|+.
T Consensus       172 ~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       172 FFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             ccCcHHHHHHcCCccEEec
Confidence            8899999999999999975

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.53  E-value=3.1e-06  Score=67.38  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=76.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      ...++.+...++.++++....+..+-.+ +.      +.|++...                   ..++.+.+.+++.+++
T Consensus        69 ~~~I~i~dse~v~raI~~~~~~~~IdLi-i~------TpGG~v~A-------------------A~~I~~~l~~~~~~v~  122 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREAPKDKPIDLI-IH------TPGGLVDA-------------------AEQIARALREHPAKVT  122 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhcCCCCceEEE-EE------CCCCcHHH-------------------HHHHHHHHHhCCCCEE
Confidence            3568889999999999988776555333 33      34555542                   2235556778999999


Q ss_pred             EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCC
Q 041986          110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDV  151 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~  151 (195)
                      +.|+..|..+|..++++||.+++.+.+.++--+.++|..|..
T Consensus       123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~  164 (285)
T PF01972_consen  123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA  164 (285)
T ss_pred             EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence            999999999999999999999999999999999999988864

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.50  E-value=2e-06  Score=70.99  Aligned_cols=105  Identities=19%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             CEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHH
Q 041986           18 NSRTVILNRPHV--LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLY   95 (195)
Q Consensus        18 ~v~~i~l~~p~~--~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   95 (195)
                      .|+.|.++.+=.  .+....-..+.+.+.|+.+..|++++.|+|.-+    |.|+....-                +.+.
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as----------------~~i~  119 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS----------------ELIA  119 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH----------------HHHH
Confidence            466666654321  011112245667888889999999999999986    677666431                1222


Q ss_pred             HHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986           96 SFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV  143 (195)
Q Consensus        96 ~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~  143 (195)
                      +.++++..-. |+++.|++.|..||+.+++++|.+++.+.+..+--.+
T Consensus       120 ~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGV  166 (317)
T COG0616         120 RALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGV  166 (317)
T ss_pred             HHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeecee
Confidence            3344444444 9999999999999999999999999999886665443

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=98.44  E-value=1.7e-05  Score=63.82  Aligned_cols=149  Identities=13%  Similarity=0.068  Sum_probs=95.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENN----SGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~----~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      |..+-.+..-..-+++...-..+.++++.+.+|    ....+|.+.-+     .|.-+.+-..        .+..+.+.+
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-----gGaRlqEg~~--------~L~~~a~i~  127 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT-----GGVRLQEANA--------GLIAIAEIM  127 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC-----CCcChhhhHH--------HHHHHHHHH
Confidence            444444444466788888889999999999752    22456766663     4444432111        011111222


Q ss_pred             HHHHHHHhhCCCcEEEEEcch--hcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H--HHHHHh
Q 041986           95 YSFVYLVATYSKPHVAIMDGI--TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H--LGEYLG  169 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~--~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~--~a~~l~  169 (195)
                      . ...++... +|+|+.+.|+  |.||+...+.+||++|+++++++.+....           ......| .  ...+-.
T Consensus       128 ~-~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~-----------VIe~~~G~e~~~~~d~~  194 (274)
T TIGR03133       128 R-AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRA  194 (274)
T ss_pred             H-HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHH-----------HHHHhcCCCccCHHHhc
Confidence            2 22334444 9999999999  89999999999999999999888774221           1112222 1  234445


Q ss_pred             hcCCCCCHHHHHhcCccccccCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      +.++.+.++.....|++|.++++|
T Consensus       195 l~~~~lGG~~~~~sG~~D~~v~dd  218 (274)
T TIGR03133       195 LVWRTTGGKHRFLSGDADVLVEDD  218 (274)
T ss_pred             ccccccchHhHhhcccceEEeCCH
Confidence            666777778888899999999875

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.40  E-value=1.1e-05  Score=63.04  Aligned_cols=135  Identities=13%  Similarity=0.065  Sum_probs=89.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++.....++...|..++..+.-+-+.+.-+    |.|+++..                   ...+.+.+...+.|+.+.
T Consensus        62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyIN----SpGGsv~a-------------------GlaIyd~m~~~~~~V~tv  118 (221)
T PRK14514         62 QIDDYTANTIQAQLLYLDSVDPGKDISIYIN----SPGGSVYA-------------------GLGIYDTMQFISSDVATI  118 (221)
T ss_pred             EEcHHHHHHHHHHHHHHhccCCCCCEEEEEE----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence            4677888888887766654322233322222    44444432                   122455677788899999


Q ss_pred             EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhh-H-----------------hhhcch---HHHHHH
Q 041986          112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSY-Y-----------------LSRLPG---HLGEYL  168 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~-~-----------------l~r~~g---~~a~~l  168 (195)
                      +-|.|.+.|..+++++|.  |++.+++.+.+....-|..   |.+. +                 +++.-|   ....+.
T Consensus       119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~---G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~  195 (221)
T PRK14514        119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ---GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD  195 (221)
T ss_pred             EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            999999999999999996  8999999999877653322   1111 0                 111222   123444


Q ss_pred             hhcCCCCCHHHHHhcCccccccCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      +-....++|+||++.||||+|+.+
T Consensus       196 ~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        196 SDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             hhcCccCCHHHHHHcCCccEEeec
Confidence            566777999999999999999875

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.39  E-value=1.4e-05  Score=61.66  Aligned_cols=138  Identities=17%  Similarity=0.132  Sum_probs=92.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++.++..++...|-.++..+.-+-+.+.-+    |.|+|+..                   ...+.+.+...+-|+...
T Consensus        35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------GlaIyd~m~~~~~~V~Ti   91 (201)
T PRK14513         35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN----CPGGEVYA-------------------GLAIYDTMRYIKAPVSTI   91 (201)
T ss_pred             EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence            4788888888888877775432222222222    44555432                   123555677888899999


Q ss_pred             EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhhH-----------------hhhcch---HHHHHHh
Q 041986          112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSYY-----------------LSRLPG---HLGEYLG  169 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~-----------------l~r~~g---~~a~~l~  169 (195)
                      +.|.|.+.+..+++++|-  |++.+++.+-+.....|..  +-+..+                 +.+.-|   ..-.+++
T Consensus        92 ~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~  169 (201)
T PRK14513         92 CVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDM  169 (201)
T ss_pred             EEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            999999999999999996  8999999999877654431  112211                 111122   1223345


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      -....++|+||++.||||+|+++.+
T Consensus       170 ~rd~~msa~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        170 ERDYFMSPEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             ccCcccCHHHHHHcCCCcEEeccCC
Confidence            5566799999999999999997654

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.38  E-value=1.4e-05  Score=61.50  Aligned_cols=136  Identities=15%  Similarity=0.057  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++.....++...|..++.++..+-+.+.=+    |.|+++..                   ...+.+.+...+.|+...
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~t~   89 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYD-------------------GLGIFDTMQHVKPDVHTV   89 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence            4788999999999999875443444444443    55555542                   123555667788899999


Q ss_pred             EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchh-hH-----------------hhhcch---HHHHHH
Q 041986          112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSS-YY-----------------LSRLPG---HLGEYL  168 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~-~~-----------------l~r~~g---~~a~~l  168 (195)
                      +-|.|.+.+..+++++|-  |++.+++.+.+.....|..   |.. .+                 +.+.-|   ....++
T Consensus        90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~---G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~  166 (196)
T PRK12551         90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGAR---GQASDIRIQADEILFLKERLNTELSERTGQPLERIQED  166 (196)
T ss_pred             EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            999999999999999985  8889999998877643321   111 00                 111122   122344


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      +-....++|+||++.||+|+|+++.
T Consensus       167 ~~rd~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        167 TDRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             hhcCcCCCHHHHHHcCCCcEEeccC
Confidence            5566679999999999999999764

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=98.30  E-value=3.3e-05  Score=62.89  Aligned_cols=149  Identities=14%  Similarity=0.119  Sum_probs=92.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNS----GVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~----~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      |..+-.+..-..-+++......+.++++.+.++.    .+-+|.+.-.|     |.-+.+-..        ....+.+. 
T Consensus        70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~~--------~L~~~a~i-  135 (301)
T PRK07189         70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEANA--------GLAAIAEI-  135 (301)
T ss_pred             EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchHH--------HHHHHHHH-
Confidence            4445555555678899999999999999997754    26677776643     444432111        01111122 


Q ss_pred             HHHHHHHhhCCCcEEEEEcch--hcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch---HHHHHHh
Q 041986           95 YSFVYLVATYSKPHVAIMDGI--TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG---HLGEYLG  169 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~--~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g---~~a~~l~  169 (195)
                      ...+..+... +|+|+.+.|+  |+||+...+.+||++|+++++.+++....           ......|   -...+..
T Consensus       136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~-----------VIe~~~G~e~~d~~d~~  203 (301)
T PRK07189        136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRA  203 (301)
T ss_pred             HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHH-----------HHHHhcCCcccCHHHhc
Confidence            2222334444 9999999999  99999999999999999999888774221           1111111   1123333


Q ss_pred             hcCCCCCHHHHHhcCccccccCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      +.++.+.+......|.+|.++++|
T Consensus       204 ~vw~~lGG~h~~~sG~~D~~v~dd  227 (301)
T PRK07189        204 LVWRTTGGKHRYLSGLADALVDDD  227 (301)
T ss_pred             ccccccCcceeeecccceEEeCCH
Confidence            334444444555678888888775

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=98.25  E-value=9.7e-05  Score=58.44  Aligned_cols=155  Identities=15%  Similarity=0.038  Sum_probs=92.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPHVLNALNTSMVALLTKQYESW-ENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~-~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      ++.-..+.=|.|.  ..++.+--....+.+... +.+.++-+|.|.-. +.|-.|..-+             .....+.+
T Consensus        30 ~G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG~~~g~~aE-------------~~G~~~a~   93 (238)
T TIGR03134        30 AGGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PSQAYGRREE-------------LLGINQAL   93 (238)
T ss_pred             CCEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CCCCCCHHHH-------------HHHHHHHH
Confidence            3444444445554  267777777777777774 44456666655552 2233332222             23344455


Q ss_pred             HHHHHHHh---hCCCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhh
Q 041986           95 YSFVYLVA---TYSKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGL  170 (195)
Q Consensus        95 ~~l~~~l~---~~~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l  170 (195)
                      .++++.+.   ..+.|+|+.|-|.+.|||+ .+.+.+|.+++.+++       .++..++-+++..+.+-.. ...++.-
T Consensus        94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A-------~i~vm~~e~aa~I~~~~~~-~~~e~a~  165 (238)
T TIGR03134        94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGA-------MVHVMDLESMARVTKRSVE-ELEALAK  165 (238)
T ss_pred             HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCc-------EEEecCHHHHHHHHccCHh-HHHHHHH
Confidence            55555555   4569999999999998876 444457777766555       5555555555555544433 2222211


Q ss_pred             --cCCCCCHHHHHhcCccccccCCCC
Q 041986          171 --TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       171 --~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                        .-...+...+.++|+||+|+|+.+
T Consensus       166 ~~~~~a~~~~~~~~~G~vd~vi~~~~  191 (238)
T TIGR03134       166 SSPVFAPGIENFVKLGGVHALLDVAD  191 (238)
T ss_pred             hhhhhccCHHHHHhCCCccEEeCCCC
Confidence              123467788999999999998653

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=98.15  E-value=0.00013  Score=59.24  Aligned_cols=141  Identities=10%  Similarity=0.092  Sum_probs=89.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |+...++..-..-++....-+.+.++++.+... .+-+|+++..     +|+-+.+=...        +..+.+....+.
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~S-----GGARmQEg~~s--------L~qmak~saa~~  200 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCAS-----GGARMQEGSLS--------LMQMAKISSALY  200 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECC-----CCccccccchh--------hhhhHHHHHHHH
Confidence            444555544467899999999999999999864 4778888874     44444321100        011111111111


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHH-hhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCC---
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGI-AVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGAT---  174 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l-~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~---  174 (195)
                      +....-.+|.|+.+.|+|.||+... ++.||++|+.+++.+++...++           ...          .+|+.   
T Consensus       201 ~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~----------t~ge~lpe  259 (296)
T CHL00174        201 DYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQ----------TLNKTVPE  259 (296)
T ss_pred             HHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHH----------hcCCcCCc
Confidence            1123567999999999999997654 6679999998888887753211           111          12222   


Q ss_pred             --CCHHHHHhcCccccccCCCC
Q 041986          175 --LSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       175 --~~a~ea~~~Glv~~vv~~~~  194 (195)
                        -+|+-.++.|+||.+|+..+
T Consensus       260 ~fq~ae~l~~~G~vD~iV~r~~  281 (296)
T CHL00174        260 GSQAAEYLFDKGLFDLIVPRNL  281 (296)
T ss_pred             ccccHHHHHhCcCceEEEcHHH
Confidence              24666788999999998754

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=98.07  E-value=0.00017  Score=58.83  Aligned_cols=148  Identities=11%  Similarity=0.100  Sum_probs=92.8

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +|.-..|.-|.+. ..-+++...-+.+.++++.+... .+-+|.+...|     |..+.+   ..     ..+... ...
T Consensus       119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE---gi-----~sL~~~-ak~  183 (292)
T PRK05654        119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE---GL-----LSLMQM-AKT  183 (292)
T ss_pred             CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh---hh-----hHHHhH-HHH
Confidence            4433333444444 67899999999999999999764 58888888644     333222   00     001111 122


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCC
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGA  173 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~  173 (195)
                      ...+.++....+|.|+.+.|+|.||+. ..++.+|++++.+++.+++-..+           .+...++   .++  .-+
T Consensus       184 ~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~---e~l--pe~  247 (292)
T PRK05654        184 SAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVR---EKL--PEG  247 (292)
T ss_pred             HHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhh---hhh--hhh
Confidence            233445567789999999999999965 56777999999998888774331           1111111   111  111


Q ss_pred             CCCHHHHHhcCccccccCCCC
Q 041986          174 TLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       174 ~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      --+++-+.+.|+||.|+++.+
T Consensus       248 ~~~ae~~~~~G~vD~Vv~~~e  268 (292)
T PRK05654        248 FQRAEFLLEHGAIDMIVHRRE  268 (292)
T ss_pred             hcCHHHHHhCCCCcEEECHHH
Confidence            225666778999999998764

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=98.04  E-value=0.00021  Score=58.04  Aligned_cols=145  Identities=10%  Similarity=0.131  Sum_probs=92.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-+++...-+.+.++++.+.. ..+-+|.+...|+     .-+.+=.        ..+..+ ......+
T Consensus       122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~-~~lPlV~l~dSgG-----aRmqEg~--------~sL~~~-ak~~~~~  186 (285)
T TIGR00515       122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALE-DNCPLIIFSASGG-----ARMQEAL--------LSLMQM-AKTSAAL  186 (285)
T ss_pred             EEEEEEeccccCCCccHHHHHHHHHHHHHHHH-cCCCEEEEEcCCC-----cccccch--------hHHHhH-HHHHHHH
Confidence            44444444436788999999999999999976 4588888877543     3222210        011111 1222233


Q ss_pred             HHHhhCCCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                      .++....+|.|+.+.|+|.||+. ..+..+|++++.+++.+++-..++           +....+   .+  +.-+--++
T Consensus       187 ~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~---e~--lpe~~q~a  250 (285)
T TIGR00515       187 AKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVR---EK--LPEGFQTS  250 (285)
T ss_pred             HHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhc---Cc--cchhcCCH
Confidence            45667789999999999999964 566799999999999888843321           111111   11  11112255


Q ss_pred             HHHHhcCccccccCCCC
Q 041986          178 EEMLFCGLATHYSLSAV  194 (195)
Q Consensus       178 ~ea~~~Glv~~vv~~~~  194 (195)
                      +-+.+.|+||.|+++.+
T Consensus       251 e~~~~~G~vD~iv~~~~  267 (285)
T TIGR00515       251 EFLLEHGAIDMIVHRPE  267 (285)
T ss_pred             HHHHhCCCCcEEECcHH
Confidence            55778899999998864

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.98  E-value=0.00032  Score=61.42  Aligned_cols=137  Identities=13%  Similarity=0.151  Sum_probs=92.6

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccc--cchhHHHhhhcccHHHHHHHHHHHHHH
Q 041986           20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG--DVVGAYRMLKEGRVEECKELFRTLYSF   97 (195)
Q Consensus        20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~--dl~~~~~~~~~~~~~~~~~~~~~~~~l   97 (195)
                      ..+..+..-..-+++......+.++++.+..+ .+-.|.+.-     |+|.  .+.+-...        ...+.+.+. -
T Consensus        60 ~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~--------l~~~g~i~~-~  124 (493)
T PF01039_consen   60 VVIAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES--------LMGMGRIFR-A  124 (493)
T ss_dssp             EEEEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH--------HHHHHHHHH-H
T ss_pred             EEEEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh--------hhhhHHHHH-H
Confidence            33444444467889999999999999999875 466776665     5555  44433221        112222222 2


Q ss_pred             HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCC
Q 041986           98 VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLS  176 (195)
Q Consensus        98 ~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~  176 (195)
                      ..++.. .+|+|+++.|+|.|+|..++..||++|+.++ +.+.+...                    ...+ ..+|+.++
T Consensus       125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP--------------------~vv~-~~~Ge~~~  182 (493)
T PF01039_consen  125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP--------------------RVVE-SATGEEVD  182 (493)
T ss_dssp             HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH--------------------HHHH-HHHSSCTS
T ss_pred             HHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc--------------------cccc-cccCcccc
Confidence            334555 9999999999999999999999999999987 88776522                    1111 13568888


Q ss_pred             HHHH-------HhcCccccccCCC
Q 041986          177 GEEM-------LFCGLATHYSLSA  193 (195)
Q Consensus       177 a~ea-------~~~Glv~~vv~~~  193 (195)
                      .++.       ...|.+|.+++++
T Consensus       183 ~~~lgG~~~h~~~sG~~d~v~~de  206 (493)
T PF01039_consen  183 SEELGGADVHAAKSGVVDYVVDDE  206 (493)
T ss_dssp             HHHHHBHHHHHHTSSSSSEEESSH
T ss_pred             chhhhhhhhhcccCCCceEEEech
Confidence            7654       3679999999875

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.98  E-value=0.00026  Score=54.27  Aligned_cols=135  Identities=19%  Similarity=0.100  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc
Q 041986           34 NTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD  113 (195)
Q Consensus        34 ~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~  113 (195)
                      +..+...+...+..++..+..+-+.|.-+    |.|+++..                   ...+.+.+...+.||...+-
T Consensus        37 ~~~~a~~i~aqll~Lea~~~~k~I~lyIN----SpGG~V~a-------------------G~AIydtm~~ik~~V~ti~~   93 (200)
T COG0740          37 EDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-------------------GLAIYDTMQFIKPPVSTICM   93 (200)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCCeEEEEe----CCCcccch-------------------hHHHHHHHHhcCCCeEEEEe
Confidence            43455555555555554444454444433    44444432                   11245567789999999999


Q ss_pred             chhcchhhHHhhhcCEE--EEeCCeEEecCcccccccCCCchhhHh--hh-c--------------ch-HH--HHHHhhc
Q 041986          114 GITMGGGAGIAVHASYR--LATEKTVFAMPEVLIGFHPDVGSSYYL--SR-L--------------PG-HL--GEYLGLT  171 (195)
Q Consensus       114 G~~~g~G~~l~l~~D~~--ia~~~a~~~~pe~~~G~~p~~g~~~~l--~r-~--------------~g-~~--a~~l~l~  171 (195)
                      |.+...|..|++++|..  ++.+++++-+....-|+. +. ++-+.  ++ +              -| ..  -.+.+-.
T Consensus        94 G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~-G~-a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~dr  171 (200)
T COG0740          94 GQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQ-GQ-ASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDR  171 (200)
T ss_pred             cHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCc-cC-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcc
Confidence            99999999999999985  888888887766652222 11 11110  01 1              11 00  1112234


Q ss_pred             CCCCCHHHHHhcCccccccCCC
Q 041986          172 GATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       172 g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      ..-++|+||++.||+|+|....
T Consensus       172 d~~msa~eA~~yGLiD~V~~~~  193 (200)
T COG0740         172 DTWMSAEEAKEYGLIDKVIESR  193 (200)
T ss_pred             cccCCHHHHHHcCCcceecccc
Confidence            4458999999999999999764

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00038  Score=59.04  Aligned_cols=148  Identities=15%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLY   95 (195)
Q Consensus        16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   95 (195)
                      +..|..+.++     +.+++...+.+.+.++.++++. ...+|+.=+    ..|                   .+.+...
T Consensus        25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ld----TPG-------------------Gl~~sm~   75 (436)
T COG1030          25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELD----TPG-------------------GLLDSMR   75 (436)
T ss_pred             CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEec----CCC-------------------chHHHHH
Confidence            3457777774     4589999999999999999754 455555432    111                   2223566


Q ss_pred             HHHHHHhhCCCcEEEEEc---chhcchhhHHhhhcCEEEEeCCeEEecCcccccc---cCCCc-hhhH------hhhcch
Q 041986           96 SFVYLVATYSKPHVAIMD---GITMGGGAGIAVHASYRLATEKTVFAMPEVLIGF---HPDVG-SSYY------LSRLPG  162 (195)
Q Consensus        96 ~l~~~l~~~~~p~Iaav~---G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~---~p~~g-~~~~------l~r~~g  162 (195)
                      ++.+++.+.|.|++..|.   +.|..+|..++++||+..+++.+.++-...-.+-   .+... ....      +++.-|
T Consensus        76 ~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~g  155 (436)
T COG1030          76 QIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERG  155 (436)
T ss_pred             HHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcC
Confidence            788899999999999885   4699999999999999999999988875543222   11111 1111      233334


Q ss_pred             ---HHHHHHhhcCCCCCHHHHHhcCccccccCC
Q 041986          163 ---HLGEYLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       163 ---~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                         ..|.+++.....++++||++.|++|-+..+
T Consensus       156 RN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~  188 (436)
T COG1030         156 RNPTWAERFVTENLSLTAEEALRQGVIDLIARD  188 (436)
T ss_pred             CChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence               357889999999999999999999977644

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.90  E-value=9.7e-05  Score=65.82  Aligned_cols=86  Identities=12%  Similarity=0.004  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986           36 SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI  115 (195)
Q Consensus        36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~  115 (195)
                      ..+.++.++++++..|+.|++|||.-..   +.|..+..+                +.+.+.+..+....||++|..++.
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~  136 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNY  136 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEccc
Confidence            3567899999999999999999999863   224443321                122233334556799999988876


Q ss_pred             hcchhhHHhhhcCEEEEeCCeEEecC
Q 041986          116 TMGGGAGIAVHASYRLATEKTVFAMP  141 (195)
Q Consensus       116 ~~g~G~~l~l~~D~~ia~~~a~~~~p  141 (195)
                      + -+|+.++.+||.+++.+.+.+++.
T Consensus       137 ~-s~~YylAs~AD~I~~~p~G~v~~~  161 (584)
T TIGR00705       137 S-QGQYYLASFADEIILNPMGSVDLH  161 (584)
T ss_pred             c-chhhhhhhhCCEEEECCCceEEee
Confidence            5 678999999999999998777553

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.83  E-value=2.7e-05  Score=57.63  Aligned_cols=42  Identities=24%  Similarity=0.201  Sum_probs=31.8

Q ss_pred             hhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcc
Q 041986          102 ATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV  143 (195)
Q Consensus       102 ~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~  143 (195)
                      ....||++|.+++.+..+++.++.+||-+++.+.+.++...+
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv   44 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGV   44 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---E
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeCh
Confidence            468999999999999999999999999999999887776544

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.74  E-value=0.00069  Score=59.51  Aligned_cols=151  Identities=13%  Similarity=0.093  Sum_probs=95.1

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHH
Q 041986           22 VILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL  100 (195)
Q Consensus        22 i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (195)
                      |.-|+|. ..-++++...+...+.++.+.+ .++-+|.|.-.++ |..|.+-+             .....+...+++.+
T Consensus       319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~~E-------------~~g~~~~~a~~~~a  383 (512)
T TIGR01117       319 IIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVNQE-------------YGGIIRHGAKVLYA  383 (512)
T ss_pred             EEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHHHH-------------HHHHHHHHHHHHHH
Confidence            3334443 4567999999999999998875 4677777766444 44443221             12344566677888


Q ss_pred             HhhCCCcEEEEEcchhcchhhHHhh----hcCEEEEeCCeEEecCcccccccCCCchhhHhh-hcch-----HHH--HHH
Q 041986          101 VATYSKPHVAIMDGITMGGGAGIAV----HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLS-RLPG-----HLG--EYL  168 (195)
Q Consensus       101 l~~~~~p~Iaav~G~~~g~G~~l~l----~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~-r~~g-----~~a--~~l  168 (195)
                      +....+|.|+.+-|.+.|+|+.-+.    .+|++++.+++.++.       .++-++...+- +.+.     ..+  .++
T Consensus       384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~  456 (512)
T TIGR01117       384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKI  456 (512)
T ss_pred             HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence            8889999999999999888654443    289888888776655       32222322222 1110     111  111


Q ss_pred             -hhcCCCCCHHHHHhcCccccccCCCC
Q 041986          169 -GLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       169 -~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                       -..-+..++..+.+.|+||.|+++.+
T Consensus       457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~  483 (512)
T TIGR01117       457 AEYREEFANPYKAAARGYVDDVIEPKQ  483 (512)
T ss_pred             HHHHHhhcCHHHHHhcCCCCeeEChHH
Confidence             01223457889999999999998754

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=97.63  E-value=8.1e-05  Score=59.64  Aligned_cols=91  Identities=14%  Similarity=0.132  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcC
Q 041986           93 TLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTG  172 (195)
Q Consensus        93 ~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g  172 (195)
                      .+.+=+..+.++++|+||.|=|.--+||+.-...+|.+++-++++|+.      +.|.+.++.++.--  +++.+ ....
T Consensus       176 AIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~--~ka~e-AAe~  246 (317)
T COG0825         176 AIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA--SKAKE-AAEA  246 (317)
T ss_pred             HHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh--hhhHH-HHHH
Confidence            444444567789999999999998777776667779999999999875      33554444443322  22222 2345


Q ss_pred             CCCCHHHHHhcCccccccCC
Q 041986          173 ATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       173 ~~~~a~ea~~~Glv~~vv~~  192 (195)
                      ..++|++.+++|+||.|+|.
T Consensus       247 mkita~dLk~lgiID~II~E  266 (317)
T COG0825         247 MKITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             cCCCHHHHHhCCCcceeccC
Confidence            68999999999999999986

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.62  E-value=0.003  Score=49.44  Aligned_cols=141  Identities=17%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           34 NTSMVALLTKQYESWENNSGVD--FVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        34 ~~~~~~~l~~~l~~~~~~~~~~--~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      +.++...+...|-.++.++..+  .+-|-+.|+...+|--+...                .....+.+.+...+-++...
T Consensus        50 ~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V~Tv  113 (222)
T PRK12552         50 GMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPVHTI  113 (222)
T ss_pred             hHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCeEEE
Confidence            3448888888887776543222  34555555544444111100                01223555666777888899


Q ss_pred             EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhhHhh------------------hcch---HHHHHH
Q 041986          112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSYYLS------------------RLPG---HLGEYL  168 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~l~------------------r~~g---~~a~~l  168 (195)
                      +-|.|.+.+..+++++|-  |++.+++++-+.....|..   |.+.-+.                  ..-|   ..-.+.
T Consensus       114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d  190 (222)
T PRK12552        114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD  190 (222)
T ss_pred             EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999996  8899999999877654432   2221111                  1111   011223


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      +-.-..++|+||++.||||+|+.+.
T Consensus       191 ~~rd~wmsA~EA~eyGliD~Ii~~~  215 (222)
T PRK12552        191 TDRMFYLTPQEAKEYGLIDRVLESR  215 (222)
T ss_pred             hcCCCcCCHHHHHHcCCCcEEeccC
Confidence            3344559999999999999999653

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=97.57  E-value=0.0024  Score=50.94  Aligned_cols=145  Identities=10%  Similarity=0.107  Sum_probs=98.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      ++...++-.-..-++....=..+.++++++-++ .+.+|+++.+     .|.-+.+-.-+         ..........+
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aS-----GGARMQEg~lS---------LMQMaktsaAl  188 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSAS-----GGARMQEGILS---------LMQMAKTSAAL  188 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecC-----cchhHhHHHHH---------HHHHHHHHHHH
Confidence            455555555556788888888899999999875 4889999884     45555432111         11122334456


Q ss_pred             HHHhhCCCcEEEEEcchhcch-hhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGG-GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~-G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                      .++.....|.|+.+..+..|| .+++++..|+.++.+++.++|...++       .-+.....++        .| --++
T Consensus       189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LP--------eg-fQ~a  252 (294)
T COG0777         189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLP--------EG-FQTA  252 (294)
T ss_pred             HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-------hhhhhcccCC--------cc-hhhH
Confidence            677889999999999999988 67999999999999999888864431       0111111111        11 1245


Q ss_pred             HHHHhcCccccccCCCC
Q 041986          178 EEMLFCGLATHYSLSAV  194 (195)
Q Consensus       178 ~ea~~~Glv~~vv~~~~  194 (195)
                      +-.++.|+||.||+..+
T Consensus       253 EfLlehG~iD~iv~R~e  269 (294)
T COG0777         253 EFLLEHGMIDMIVHRDE  269 (294)
T ss_pred             HHHHHcCCceeeecHHH
Confidence            66779999999998654

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.42  E-value=0.0031  Score=55.43  Aligned_cols=106  Identities=14%  Similarity=0.130  Sum_probs=67.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-+++....+.+.++.+.+.++. +-+|.+.-.|     |..+.+-...        ...+.+.+... 
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~~~--------l~~~~~~~~~~-  148 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAVDA--------LKGYGDIFYRN-  148 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccchh--------hhhHHHHHHHH-
Confidence            3344444333678899999999999999998754 6777777643     3333221000        00111111111 


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCe-EEec
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKT-VFAM  140 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a-~~~~  140 (195)
                       ....-.+|.|+++.|+|.||+.....+||++|+.+++ .+.+
T Consensus       149 -~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~  190 (512)
T TIGR01117       149 -TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI  190 (512)
T ss_pred             -HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence             1123469999999999999998777899999999864 4554

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=97.40  E-value=0.0091  Score=53.09  Aligned_cols=110  Identities=10%  Similarity=0.014  Sum_probs=70.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-+.-+++....+.+.++++.+.+. .+-+|.|.-.++.+-.+ ..+.+..         ...+. .+..-.
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~~---------~~~~g-~if~~~  198 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFPD---------RDHFG-RIFYNQ  198 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccch---------HhHHH-HHHHHH
Confidence            333333333367899999999999999999764 47788777744333211 1111100         00111 111122


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEec
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAM  140 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~  140 (195)
                      .++....+|.|+++.|+|.|||.....+||++|++++ +.+.+
T Consensus       199 ~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~  241 (569)
T PLN02820        199 ARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL  241 (569)
T ss_pred             HHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence            2355678999999999999999999999999998764 55555

>PRK10949 protease 4; Provisional

Probab=96.86  E-value=0.0083  Score=53.92  Aligned_cols=86  Identities=14%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986           36 SMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI  115 (195)
Q Consensus        36 ~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~  115 (195)
                      -.+.++.+++++++.|+.|++|||.-...   .|.....+                +.+.+.+..+....||+||.....
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~----------------~eI~~ai~~fk~sGKpVvA~~~~~  155 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM----------------QYIGKALREFRDSGKPVYAVGDSY  155 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH----------------HHHHHHHHHHHHhCCeEEEEecCc
Confidence            34568999999999999999999998631   12222211                122233444556789999864444


Q ss_pred             hcchhhHHhhhcCEEEEeCCeEEecC
Q 041986          116 TMGGGAGIAVHASYRLATEKTVFAMP  141 (195)
Q Consensus       116 ~~g~G~~l~l~~D~~ia~~~a~~~~p  141 (195)
                       .-+++.|+.+||.+++.+.+.+++.
T Consensus       156 -~s~~YyLASaAD~I~l~P~G~v~~~  180 (618)
T PRK10949        156 -SQGQYYLASFANKIYLSPQGVVDLH  180 (618)
T ss_pred             -cchhhhhhhhCCEEEECCCceEEEe
Confidence             4568999999999999998777653

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=95.90  E-value=0.051  Score=47.61  Aligned_cols=105  Identities=10%  Similarity=0.111  Sum_probs=67.6

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986           20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY   99 (195)
Q Consensus        20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (195)
                      ....-+.+-+.-++..-..+.+.++.+.+.++. .-+|-|.-     |.|..+.+-....        ..+ -.++.-..
T Consensus        94 ~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g-~P~i~l~d-----sgGari~~~v~~l--------~g~-g~iF~~~a  158 (526)
T COG4799          94 FVFANDFTVKGGTLGEMTAKKILRAQELAIENG-LPVIGLND-----SGGARIQEGVPSL--------AGY-GRIFYRNA  158 (526)
T ss_pred             EEEEecCceecccccccccchHHHHHHHHHHcC-CCEEEEEc-----ccccccccCcccc--------ccc-hHHHHHHH
Confidence            333334444778888888888999998888754 45555544     3444443311100        011 12222222


Q ss_pred             HHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEec
Q 041986          100 LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAM  140 (195)
Q Consensus       100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~  140 (195)
                      +++.. +|.|++|.|+|.|||..+...||++|+.++ +++.+
T Consensus       159 ~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfl  199 (526)
T COG4799         159 RASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFL  199 (526)
T ss_pred             HhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEe
Confidence            44455 999999999999999999999999999987 44443

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.86  E-value=0.15  Score=45.54  Aligned_cols=145  Identities=14%  Similarity=0.093  Sum_probs=89.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      -.++.+-.+...+.++.... .++-+|-|.-..+ |..|.+-+.             ....+...+++.++....+|.|+
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~-------------~G~~~~~a~l~~A~a~~~VP~is  444 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA-------------SGIAKAGAKMVMAVACAKVPKIT  444 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH-------------hhHHHHHHHHHHHHHhCCCCEEE
Confidence            35777777777777777664 5677776665322 444444432             24556777888899999999999


Q ss_pred             EEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc-c-----------h-HH-H-HH-H-hhcCC
Q 041986          111 IMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-P-----------G-HL-G-EY-L-GLTGA  173 (195)
Q Consensus       111 av~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-~-----------g-~~-a-~~-l-~l~g~  173 (195)
                      .+-|.+.|+|..-...-.+   .++-.|..|...+|..++.++...+.+. +           . .. + ++ + -..-+
T Consensus       445 vi~g~a~G~g~~aM~g~~~---~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (569)
T PLN02820        445 IIVGGSFGAGNYGMCGRAY---SPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYER  521 (569)
T ss_pred             EEECCcchHHHHHhcCcCC---CCCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHH
Confidence            9999999987655442221   2233444455666666555555555431 1           0 10 0 00 0 11122


Q ss_pred             CCCHHHHHhcCccccccCCC
Q 041986          174 TLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       174 ~~~a~ea~~~Glv~~vv~~~  193 (195)
                      ..++-.+-+.|++|.|+++.
T Consensus       522 ~~~p~~aa~~~~vD~VIdP~  541 (569)
T PLN02820        522 EANPYYSTARLWDDGVIDPA  541 (569)
T ss_pred             hCCHHHHHHcCCcCcccCHH
Confidence            34666788999999999875

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.33  Score=38.64  Aligned_cols=132  Identities=17%  Similarity=0.129  Sum_probs=72.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++..+.+.+...|-.++..++-|=+.+.-+    |.|.++..                   ...+.+.+..++-||-..
T Consensus       100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vta-------------------glAIYDtMq~ik~~V~Ti  156 (275)
T KOG0840|consen  100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTA-------------------GLAIYDTMQYIKPDVSTI  156 (275)
T ss_pred             cCcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccch-------------------hhhHHHHHHhhCCCceee
Confidence            4788888888888888876555565555543    44554421                   112333444455555555


Q ss_pred             EcchhcchhhHHhhhcCEEEEeCCeEEecCccccccc-CCCchh----hHhh--h-cch-H----------------HHH
Q 041986          112 MDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFH-PDVGSS----YYLS--R-LPG-H----------------LGE  166 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~-p~~g~~----~~l~--r-~~g-~----------------~a~  166 (195)
                      +-|.|.+-|..|+.+     .+..-++.+|..++=+. |.+|+.    -..-  + ++- +                ...
T Consensus       157 c~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~  231 (275)
T KOG0840|consen  157 CVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIE  231 (275)
T ss_pred             ehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            557777665544433     34556666666665554 333321    1111  1 111 0                001


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSL  191 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~  191 (195)
                      +-+-.-+-++|+||++.||||+|+.
T Consensus       232 ~d~dRd~fmsa~EA~eyGliD~v~~  256 (275)
T KOG0840|consen  232 KDMDRDRFMSAEEAKEYGLIDKVID  256 (275)
T ss_pred             hhhcccccCCHHHHHHhcchhhhhc
Confidence            1122334489999999999999985

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.00  E-value=0.21  Score=43.89  Aligned_cols=152  Identities=14%  Similarity=0.128  Sum_probs=89.5

Q ss_pred             EEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986           21 TVILNRPHV-LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY   99 (195)
Q Consensus        21 ~i~l~~p~~-~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (195)
                      -|.-|+|.. .-.++++-.+...+.++.... .++-+|.|.-. +.|..|-.-+             .....+...+++.
T Consensus       297 Giian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~E-------------~~g~~~~ga~~~~  361 (493)
T PF01039_consen  297 GIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEAE-------------RAGIIRAGARLLY  361 (493)
T ss_dssp             EEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHHH-------------HTTHHHHHHHHHH
T ss_pred             EEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchhh-------------hcchHHHHHHHHH
Confidence            344456542 226999999999988887776 56778877753 3343333222             2355667778999


Q ss_pred             HHhhCCCcEEEEEcchhcchhhHHhhhc----CEEEEeCCeEEecCcccccccCCCchhhHhhhc-ch--H---------
Q 041986          100 LVATYSKPHVAIMDGITMGGGAGIAVHA----SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-PG--H---------  163 (195)
Q Consensus       100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~~----D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-~g--~---------  163 (195)
                      ++..+.+|+|..+-|.+.|+|+......    |++++.+++.++       +.++.++...+.+. .-  .         
T Consensus       362 a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~  434 (493)
T PF01039_consen  362 ALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQ  434 (493)
T ss_dssp             HHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHH
T ss_pred             HHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHH
Confidence            9999999999999999999887555555    677666655554       44434444333321 11  0         


Q ss_pred             HHHHHhh-cCCCCCHHHHHhcCccccccCCCC
Q 041986          164 LGEYLGL-TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       164 ~a~~l~l-~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ....+-- .-+.-++..+...|++|.++++.+
T Consensus       435 ~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~  466 (493)
T PF01039_consen  435 RAEKIAEYEDELSSPYRAASRGYVDDIIDPAE  466 (493)
T ss_dssp             HHHHHHHHHHHHSSHHHHHHTTSSSEESSGGG
T ss_pred             HHHHHHHHHHhcCCHHHHHhcCCCCCccCHHH
Confidence            1111111 112257889999999999998754

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=84.76  E-value=11  Score=32.72  Aligned_cols=146  Identities=13%  Similarity=0.099  Sum_probs=91.9

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHH
Q 041986           22 VILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL  100 (195)
Q Consensus        22 i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (195)
                      |.-|+|+ ..-++..+.-..-.+-.+... +..+-.|.+...++ |..|.+.+..             .+......|...
T Consensus       353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G-fm~g~~~e~~-------------gIaK~gAklv~a  417 (536)
T KOG0540|consen  353 IVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG-FMVGRAAEAG-------------GIAKHGAKLVYA  417 (536)
T ss_pred             EeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC-ccccchhhhh-------------chhhhhhhhhhh
Confidence            4445655 334555555555554444444 35688887777655 8888877642             344556678888


Q ss_pred             HhhCCCcEEEEEcchhcchhhH---HhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc-----ch--HHHHHHhh
Q 041986          101 VATYSKPHVAIMDGITMGGGAG---IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-----PG--HLGEYLGL  170 (195)
Q Consensus       101 l~~~~~p~Iaav~G~~~g~G~~---l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-----~g--~~a~~l~l  170 (195)
                      .....+|-|..+.|.+.||-+.   -.+.-|+.++.+.+.+++-..+       ++...+.+.     ..  ....+.  
T Consensus       418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~--  488 (536)
T KOG0540|consen  418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEK--  488 (536)
T ss_pred             hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHH--
Confidence            8899999999999999997655   4477788888888777664321       122222222     22  222333  


Q ss_pred             cCCCCCHHHHHhcCccccccCCCC
Q 041986          171 TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       171 ~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .|.++.+   ...||+|.++|+..
T Consensus       489 f~npy~a---~~Rg~~D~II~p~~  509 (536)
T KOG0540|consen  489 FGNPYYA---AARGWDDGIIDPSD  509 (536)
T ss_pred             hcCccHH---HHhhccccccChhH
Confidence            2666654   56799999988753

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=82.63  E-value=5.7  Score=32.34  Aligned_cols=53  Identities=25%  Similarity=0.414  Sum_probs=34.6

Q ss_pred             HHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhc
Q 041986           41 LTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITM  117 (195)
Q Consensus        41 l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~  117 (195)
                      +.++|+.+++|++.+++|+-|.     -|.+-++           ...       ++... ...+||+|+.+-|.+.
T Consensus       188 fid~L~~fe~Dp~T~~ivmiGE-----iGG~aEe-----------~AA-------~~i~~-~~~~KPVVa~iaG~ta  240 (293)
T COG0074         188 FIDALEMFEADPETEAIVMIGE-----IGGPAEE-----------EAA-------EYIKA-NATRKPVVAYIAGRTA  240 (293)
T ss_pred             HHHHHHHHhcCccccEEEEEec-----CCCcHHH-----------HHH-------HHHHH-hccCCCEEEEEeccCC
Confidence            4478888888999999998885     2222222           111       22223 3355999999999875

>smart00250 PLEC Plectin repeat

Probab=81.42  E-value=1.3  Score=24.36  Aligned_cols=19  Identities=47%  Similarity=0.403  Sum_probs=17.4

Q ss_pred             hcCCCCCHHHHHhcCcccc
Q 041986          170 LTGATLSGEEMLFCGLATH  188 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~  188 (195)
                      .+|+++|-.||++.||+|.
T Consensus        17 ~t~~~lsv~eA~~~glid~   35 (38)
T smart00250       17 ETGQKLSVEEALRRGLIDP   35 (38)
T ss_pred             CCCCCcCHHHHHHcCCCCc
Confidence            3899999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		2e-35
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		5e-29
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		5e-27
3ju1_A	407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		4e-26
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		2e-17
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		4e-16
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		2e-15
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		2e-15
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		2e-15
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		2e-15
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-13
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		1e-13
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		2e-13
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		2e-13
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		3e-13
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		5e-13
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		9e-13
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		2e-12
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		2e-12
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		2e-12
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		5e-12
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-11
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-11
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		2e-11
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		3e-11
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		2e-10
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		2e-10
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-10
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		3e-10
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		3e-10
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-10
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-10
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		3e-10
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		4e-10
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		4e-10
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		4e-10
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		4e-10
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		4e-10
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		4e-10
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		5e-10
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		1e-09
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-09
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		2e-09
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		2e-09
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-09
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-09
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		8e-09
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-08
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		1e-08
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		2e-08
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-08
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		5e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-07
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-07
2gtr_A	261	Human Chromodomain Y-Like Protein Length = 261		1e-07
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		2e-07
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-07
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-07
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		3e-07
3m6m_A	305	Crystal Structure Of Rpff Complexed With Rec Domain		6e-07
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		7e-07
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		8e-07
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		8e-07
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		9e-07
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		9e-07
3hp0_A	267	Crystal Structure Of A Putative Polyketide Biosynth		1e-06
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-06
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		1e-06
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		1e-06
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		2e-06
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		7e-06
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		9e-06
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		1e-05
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		1e-05
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		1e-05
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		1e-05
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		1e-05
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		2e-05
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		2e-05
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		2e-05
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		2e-05
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		3e-05
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		7e-05
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-04
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		3e-04
3njb_A	333	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-04
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		8e-04

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 12/186 (6%)
Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG-NGRSFCA 68
            VL+ ++  +  + LNRP  LNAL  + +  +  Q + WE +     ++IKG  G++FCA
Sbjct: 7   EVLLGKKGCTGVITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCA 66
Query: 69  GGDVVGAYRMLKEGRVEECKE-----LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGI 123
           GGD+    R++ E   E+ K+      FR  Y     V +  KP+VA++ GIT GGG G+
Sbjct: 67  GGDI----RVISEA--EKAKQKIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGL 120
Query: 124 AVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFC 183
           +VH  +R+ATEK +FA PE  IG  PDVG  Y+L RL G LG +L LTG  L G ++   
Sbjct: 121 SVHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRA 180
Query: 184 GLATHY 189
           G+ATH+
Sbjct: 181 GIATHF 186

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score =  123 bits (309), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLK 80
           + LNRP  +N+L   MV  + ++  +WEN+  V  V++ G G R  CAGGDVV  Y   K
Sbjct: 22  LTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAK 81
Query: 81  EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
               E  +  +   Y     +  Y KP+V+IMDGI MGGG G+  H + R+ T+ T  AM
Sbjct: 82  ADGAE-ARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAM 140
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           PEV IGF PDVG +Y LSR PG LG +  LTGA  SG + +  G A HY
Sbjct: 141 PEVGIGFIPDVGGTYLLSRAPGKLGLHAALTGAPFSGADAIVMGFADHY 189

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 1/185 (0%)
Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-R 64
            S   VL+ +   +  + L+RP  LNAL  + V  +      W  +  V+ VVI   G R
Sbjct: 21  QSXSDVLIRKVRRAGRITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAEGPR 80
Query: 65  SFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIA 124
           +FCAGGD+   +     G     ++ +R  Y     +A + KP V++  G T GGG G+ 
Sbjct: 81  AFCAGGDIAELHGRGVAGDHAFGQDFWRVEYRXNDRIAAFPKPIVSLXQGFTXGGGVGLG 140
Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCG 184
            HA +R+  E +  + PE  IG  PDVG ++ L+R PG +G +LGLTGA     + +F G
Sbjct: 141 CHARHRIVGETSQISXPECAIGLVPDVGGTHLLARAPGRIGVWLGLTGARXGPGDAIFAG 200
Query: 185 LATHY 189
            A  +
Sbjct: 201 FADRF 205

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 97/172 (56%), Gaps = 4/172 (2%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYR--M 78
           V LN    LNAL+   V   T Q   W+ +  +  VV+ G+G ++FCAGGDV   Y   +
Sbjct: 55  VTLNVEKALNALDLDXVRAXTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASV 114
Query: 79  LKEGRVEE-CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTV 137
             +G+V E  K  F   Y   YL+ TY KP +   DGI  GGG G+   AS+++ TE + 
Sbjct: 115 AAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVXGGGLGLXAGASHKVVTETSR 174
Query: 138 FAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
            A PEV IG +PDVG SY+L+R PG  G +LGLT    +  +  + GLA HY
Sbjct: 175 IAXPEVTIGLYPDVGGSYFLNRXPGKXGLFLGLTAYHXNAADACYVGLADHY 226

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           S+   +LVE       + +NRPH  NAL+T+MV+     ++  +++ G+   ++ G G +
Sbjct: 6   SAARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSA 65
Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
           +C GGD+   + M+++G          T+   + L  T +KP +A ++G  +GGG  +  
Sbjct: 66  YCVGGDLSDGW-MVRDGSAPPLDPA--TIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQ 122
Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR-LPGHLGEYLGLTGATLSGEEMLFCG 184
               R++ E   F +PEV  G  P  GS   L R +P      + LTG  L+  E    G
Sbjct: 123 QTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFG 182
Query: 185 LATH 188
           L  H
Sbjct: 183 LVGH 186

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 22/189 (11%)
Query: 10  HVLVEERANSRTV---ILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           +++ E+R  + TV    LNRP  LNAL   ++  L +  + +E +  V  +V+ G  ++F
Sbjct: 31  YIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAF 90
Query: 67  CAGGDVVGAYRMLKEGRVEECKEL-FRTLYSFVYL-----VATYSKPHVAIMDGITMGGG 120
            AG D+            +E + L F+  YS  +L     +    KP +A ++G   GGG
Sbjct: 91  AAGADI------------KEMQNLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGG 138
Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEE 179
             +A+      A EK  FA PE+LIG  P  G +  L+R  G  L   + LTG  +S ++
Sbjct: 139 CELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQD 198
Query: 180 MLFCGLATH 188
               GL + 
Sbjct: 199 AKQAGLVSK 207

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 24  LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG- 82
           L RP VLNAL+  MVA +    E+++ N  V  +V+ G GR+F AG D+     M K+  
Sbjct: 20  LARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADI---QEMAKDDP 76
Query: 83  -RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141
            R+E   +     +  + +V T   P +A ++G+ +GGG  +A+     +A+    F  P
Sbjct: 77  IRLEWLNQF--ADWDRLSIVKT---PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFP 131
Query: 142 EVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFCGLATH 188
           EV +G  P  G +  L++L  P    E+L  TGA +S +E    G+   
Sbjct: 132 EVNLGVMPGAGGTQRLTKLIGPKRALEWL-WTGARMSAKEAEQLGIVNR 179

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 10  HVLVEERANSRTV---ILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           +++ E++  + +V    LNRP  LNAL   ++  L +  E++E +  V  +V+ G  ++F
Sbjct: 6   YIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAF 65
Query: 67  CAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL-----VATYSKPHVAIMDGITMGGGA 121
            AG D+            E     F+  YS  +L     +    KP +A ++G  +GGG 
Sbjct: 66  AAGADIK-----------EMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGC 114
Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEM 180
            +A+      A EK  F  PE+L+G  P  G +  L+R  G  L   + LTG  +S ++ 
Sbjct: 115 ELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDA 174
Query: 181 LFCGLATH 188
              GL + 
Sbjct: 175 KQAGLVSK 182

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 10  HVLVEERANSRTV---ILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           +++ E++  + +V    LNRP  LNAL   ++  L +  E++E +  V  +V+ G  ++F
Sbjct: 3   YIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAF 62
Query: 67  CAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL-----VATYSKPHVAIMDGITMGGGA 121
            AG D+            E     F+  YS  +L     +    KP +A ++G  +GGG 
Sbjct: 63  AAGADIK-----------EMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGC 111
Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEM 180
            +A+      A EK  F  PE+L+G  P  G +  L+R  G  L   + LTG  +S ++ 
Sbjct: 112 ELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDA 171
Query: 181 LFCGLATH 188
              GL + 
Sbjct: 172 KQAGLVSK 179

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 10  HVLVEERANSRTV---ILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           +++ E++  + +V    LNRP  LNAL   ++  L +  E++E +  V  +V+ G  ++F
Sbjct: 5   YIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAF 64
Query: 67  CAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL-----VATYSKPHVAIMDGITMGGGA 121
            AG D+            E     F+  YS  +L     +    KP +A ++G  +GGG 
Sbjct: 65  AAGADIK-----------EMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGC 113
Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEM 180
            +A+      A EK  F  PE+L+G  P  G +  L+R  G  L   + LTG  +S ++ 
Sbjct: 114 ELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDA 173
Query: 181 LFCGLATH 188
              GL + 
Sbjct: 174 KQAGLVSK 181

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +LVE       + LNRP  LNALN+ ++  +T      +++  +  ++I G+ ++F AG 
Sbjct: 27  ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 86
Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVY---LVATYSK------PHVAIMDGITMGGGA 121
           D+               KE+    ++  +     AT+ K      P +A + G  +GGG 
Sbjct: 87  DI---------------KEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGC 131
Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTGATLSGEEM 180
            +A+     +A +   F  PE+ +G  P +G S  L+R  G      L LTG T+   E 
Sbjct: 132 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEA 191
Query: 181 LFCGLATH 188
              GL + 
Sbjct: 192 ERSGLVSR 199

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +LVE       + LNRP  LNALN+ ++  +T      +++  +  ++I G+ ++F AG 
Sbjct: 7   ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 66
Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVY---LVATYSK------PHVAIMDGITMGGGA 121
           D+               KE+    ++  +     AT+ K      P +A + G  +GGG 
Sbjct: 67  DI---------------KEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGC 111
Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTGATLSGEEM 180
            +A+     +A +   F  PE+ +G  P +G S  L+R  G      L LTG T+   E 
Sbjct: 112 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEA 171
Query: 181 LFCGLATH 188
              GL + 
Sbjct: 172 ERSGLVSR 179

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +LVE       + LNRP  LNALN+ ++  +T      +++  +  ++I G+ ++F AG 
Sbjct: 6   ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 65
Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVY---LVATYSK------PHVAIMDGITMGGGA 121
           D+               KE+    ++  +     AT+ K      P +A + G  +GGG 
Sbjct: 66  DI---------------KEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGC 110
Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTGATLSGEEM 180
            +A+     +A +   F  PE+ +G  P +G S  L+R  G      L LTG T+   E 
Sbjct: 111 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEA 170
Query: 181 LFCGLATH 188
              GL + 
Sbjct: 171 ERSGLVSR 178

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 7/168 (4%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + LNRP   NALN +++  L  + E+   ++ +   VI GN R F AG D+     M ++
Sbjct: 18  LTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADL---NEMAEK 74
Query: 82  GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141
                  +    L++ +     ++KP +A ++G  +G G  +A+     +A E   F +P
Sbjct: 75  DLAATLNDTRPQLWARLQ---AFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLP 131
Query: 142 EVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLATH 188
           E+ +G  P  G +  L R  G  L   + L+G +++ ++    GL + 
Sbjct: 132 EITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSD 179

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%)
Query: 7   SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           S + + +++    RT+ LNRP  LNA N ++     +      ++  V  V++ G+GR F
Sbjct: 4   SMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGF 63
Query: 67  CAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
            AG D+      + +    E K  FR L   +  +A + KP +  ++G+ +G GA I  +
Sbjct: 64  SAGTDLAEMQARITDPNFSEGKFGFRGL---IKALAGFPKPLICAVNGLGVGIGATILGY 120
Query: 127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHL-GEYLGLTGATLSGEEMLFCGL 185
           A     +       P   +G  P+  SSY L +L G     +L ++   +  EE L  GL
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGL 180

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + LNRP  LNA    M A +TK  +    +  V  VVI G GR+FCAG D+ G    +  
Sbjct: 16  LTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDH 75
Query: 82  GRVEECKELFRTLYS-FVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G V       R+ Y+  +  +    KP VA ++G   G G  +A+   +RL +EK  FA 
Sbjct: 76  GDV------LRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAP 129
Query: 141 PEVLIGFHPDVGSSYYLSRLPGH 163
             + +G  PD G  YYL RL G 
Sbjct: 130 AFIHVGLVPDAGHLYYLPRLVGR 152

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + L+RP  LNALN ++ A +      ++ +  +  +V+ G+ R+F AG D+     +   
Sbjct: 23  IRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPH 82
Query: 82  GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141
               + +E  R L S    +    KP VA + G  +GGG  +A+     +A +   F  P
Sbjct: 83  ----QARE--RNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQP 136
Query: 142 EVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTGATLSGEEMLFCGLATH 188
           E+ +G  P +G +  L+R  G      L LTG +L+ EE    GL + 
Sbjct: 137 EITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSR 184

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 12  LVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGG 70
           L E R N   + +NRP   NA+N ++   +    E  +++  V  VV+ G G +SFCAG 
Sbjct: 12  LAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGA 71
Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFV-YLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           D+    R       E         + F  Y+     KP +A ++G  +GGG  +A+ +  
Sbjct: 72  DLKAIARR------ENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDL 125
Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLS-RLPGHLGEYLGLTGATLSGEEMLFCGL 185
            +A E+  F +PEV  G     G  + ++ +LP  +   L LTG  LS       GL
Sbjct: 126 VVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGL 182

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 12  LVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGG 70
           L E R N   + +NRP   NA+N ++   +    E  +++  V  VV+ G G +SFCAG 
Sbjct: 12  LAERRGNVMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGA 71
Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFV-YLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           D+    R       E         + F  Y+     KP +A ++G  +GGG  +A+ +  
Sbjct: 72  DLKAIARR------ENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDL 125
Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLS-RLPGHLGEYLGLTGATLSGEEMLFCGL 185
            +A E+  F +PEV  G     G  + ++ +LP  +   L LTG  LS       GL
Sbjct: 126 VVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGL 182

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 9/186 (4%)
Query: 3   LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62
           L + ++   +VE R N   + ++RP   NA+N ++   +    E  + +  V  VVI G 
Sbjct: 9   LTEVTRQAAVVERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGA 68
Query: 63  G-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV-YLVATYSKPHVAIMDGITMGGG 120
           G +SFCAG D+    R       E         + F  Y+     KP +A ++G  +GGG
Sbjct: 69  GDKSFCAGADLKAISRG------ENLYHAEHPEWGFAGYVHHFIDKPTIAAVNGTALGGG 122
Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYL-SRLPGHLGEYLGLTGATLSGEE 179
           + +A+ +   +A E   F +PEV  G     G  + +  +LP  +   L LTG  ++  +
Sbjct: 123 SELALASDLVIACESASFGLPEVKRGLIAGAGGVFRIVEQLPRKVALELVLTGEPMTASD 182
Query: 180 MLFCGL 185
            L  GL
Sbjct: 183 ALRWGL 188

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           VL E +     + LNRP  LNA+   ++  L    +  E +  V  +++ G GR+F AG 
Sbjct: 2   VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQ 61
Query: 71  DVVGAYRMLKE--GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           D       L E   R  + +   R     V  ++   KP V  ++G+  G G  +A+   
Sbjct: 62  D-------LTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGD 114
Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
            RLA     F    V IG  PD G S+ L RL G    + L L    LS EE L  GL
Sbjct: 115 LRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGL 172

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T+ LNRP  LNAL+  M+  L   Y   EN+  V  +V+ G GR+FC+G D         
Sbjct: 23  TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGAD--------- 73
Query: 81  EGRVEECKELFRTLYSFVYLVA---------------TYSKPHVAIMDGITMGGGAGIAV 125
              V+E  E  + +Y   YL                 T +KP +  ++GI  G G     
Sbjct: 74  ---VKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVT 130
Query: 126 HASYRLATEKTVFAMPEVLIGF 147
                +A+E+  F  P V IG 
Sbjct: 131 TTDIVIASEQATFFDPHVSIGL 152

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 1/176 (0%)
Query: 15  ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVG 74
           E+ +   V LN P   N L+      L +  +  E + GV  VV+ G G++F AG D+  
Sbjct: 5   EKGHVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF 64
Query: 75  AYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATE 134
             R+ + G  E  +    +L    + V TY KP VA ++G  + GGAG+A+     +  E
Sbjct: 65  LERVTELGAEENYRHSL-SLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDE 123
Query: 135 KTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYS 190
           +      EV IGF   + S   +  +     + L LTG  +   E    GL    +
Sbjct: 124 EARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIA 179

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 12/185 (6%)
Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
             LVE+R ++  V +NRP   NAL+  M+ ++ + ++  +N+  +   ++ G G  FCAG
Sbjct: 21  DALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAG 80
Query: 70  GDVVGAYRM-----LKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIA 124
            D+  A +       K+G  +  +     L     L     KP +A ++G  + GG  I 
Sbjct: 81  MDLKAATKKPPGDSFKDGSYDPSR--IDALLKGRRL----KKPLIAAVEGPAIAGGTEIL 134
Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR-LPGHLGEYLGLTGATLSGEEMLFC 183
                R+A E   F + E     +P  GS+  L R +P  +   L LTG  ++  E    
Sbjct: 135 QGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEM 194
Query: 184 GLATH 188
           GL  H
Sbjct: 195 GLVGH 199

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 77/180 (42%), Gaps = 9/180 (5%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           V VE      TVI+NRP   NA+N    A L   +  ++ +      V+ GNG +FCAG 
Sbjct: 10  VQVERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGNGGTFCAGA 69
Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATY-SKPHVAIMDGITMGGGAGIAVHASY 129
           D       LK     E   + RT    +       SKP +A + G  + GG  +A+    
Sbjct: 70  D-------LKAFGTAEANAVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDL 122
Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLATH 188
           R+A +  VF +     G     G +  L RL GH     + LTG  +  +E L  GLA  
Sbjct: 123 RVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLANR 182

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 75/181 (41%), Gaps = 26/181 (14%)
Query: 14  EERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVV 73
           EER   RT+ LNRP   NAL+ ++           E +  VD V+I G    FCAG D+ 
Sbjct: 15  EERV--RTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDL- 71
Query: 74  GAYRMLKEGRVEECKEL--FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRL 131
                         KEL     L          +KP +  ++G  + GG  +A++    +
Sbjct: 72  --------------KELGGSSALPDISPRWPALTKPVIGAINGAAVTGGLELALYCDILI 117
Query: 132 ATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG----EYLGLTGATLSGEEMLFCGLAT 187
           A+E   FA     +G  P  G S    RLP  +G      + LTG  LS  + L  GL T
Sbjct: 118 ASENARFADTHARVGLLPTWGLSV---RLPQKVGIGLARRMSLTGDYLSAADALRAGLVT 174
Query: 188 H 188
Sbjct: 175 E 175

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 75/181 (41%), Gaps = 26/181 (14%)
Query: 14  EERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVV 73
           EER   RT+ LNRP   NAL+ ++           E +  VD V+I G    FCAG D+ 
Sbjct: 32  EERV--RTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDL- 88
Query: 74  GAYRMLKEGRVEECKEL--FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRL 131
                         KEL     L          +KP +  ++G  + GG  +A++    +
Sbjct: 89  --------------KELGGSSALPDISPRWPALTKPVIGAINGAAVTGGLELALYCDILI 134
Query: 132 ATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG----EYLGLTGATLSGEEMLFCGLAT 187
           A+E   FA     +G  P  G S    RLP  +G      + LTG  LS  + L  GL T
Sbjct: 135 ASENARFADTHARVGLLPTWGLSV---RLPQKVGIGLARRMSLTGDYLSAADALRAGLVT 191
Query: 188 H 188
Sbjct: 192 E 192

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 6/168 (3%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + L+ P   N+    +   L   Y+  +++  V  +V+ G   +FC+G  +  A      
Sbjct: 20  LTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAA 79
Query: 82  GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141
            R  +         +F         P +A ++G  +G G  +A+HA  R+  E+  +A+P
Sbjct: 80  PRNPDFSASPVQPAAF-----ELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIP 134
Query: 142 EVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
           +V  G  PD  + + L RL G  +   L LTGA+ S +  +  GLA  
Sbjct: 135 QVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANR 182

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 31  NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90
           NA ++ +   +T+  +  E +  +  VVI G GR F AG D+     + +  +  E  +L
Sbjct: 27  NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQL 86
Query: 91  FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPD 150
            +  +     V   SKP +A + G  +GGG   A     R ATE     +PE+ +G  P 
Sbjct: 87  GQVTFE---RVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKLGLPELTLGLIPG 143
Query: 151 VGSSYYLSRLPGHLGEYLG----LTGATLSGEEMLFCGL 185
              +    RLP ++G+       LT   ++G E L  GL
Sbjct: 144 FAGT---QRLPRYVGKAKACEXXLTSTPITGAEALKWGL 179

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T+ LNRP   NAL+ +M+A L + + +   +  V  VV+  +G++FCAG D       LK
Sbjct: 38  TLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHD-------LK 90
Query: 81  EGRVEECKELFRTLYS----FVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKT 136
           E R E  +E +  L++     +  +     P +A + GI    G  +       +AT   
Sbjct: 91  EMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDA 150
Query: 137 VFAMPEVLIGF 147
            FA+  + +G 
Sbjct: 151 RFAVSGINVGL 161

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    Y  +TG T  G++    GL   
Sbjct: 142 SEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    Y  +TG T  G++    GL   
Sbjct: 142 SEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 3   LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62
           L   ++  VLVE+R     + +NRP   N++N ++   L    +  + ++G+   ++ G 
Sbjct: 9   LNGDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGA 68
Query: 63  GRSFCAGGDVVGAYR---MLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
           G SFCAG D+    R   ++ EGR               +     +KP +A ++G  + G
Sbjct: 69  GGSFCAGMDLKAFARGENVVVEGR------------GLGFTERPPAKPLIAAVEGYALAG 116
Query: 120 GAGIAVHASYRLATEKTVFAMPEV-LIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGE 178
           G  +A+     +A   + F +PEV         G      R+P  +   L LTG  LS E
Sbjct: 117 GTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAE 176
Query: 179 EMLFCGL 185
                G+
Sbjct: 177 RAHALGM 183

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    Y  +TG T  G++    GL   
Sbjct: 142 SEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    Y  +TG T  G++    GL   
Sbjct: 142 SEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    Y  +TG T  G++    GL   
Sbjct: 142 SEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    Y  +TG T  G++    GL   
Sbjct: 142 SEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    Y  +TG T  G++    GL   
Sbjct: 142 SEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGE-YLGLTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    Y  +TG T  G++    GL   
Sbjct: 142 SEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           S+Q HVL         V LNRP   NA+N +    L + ++    +S    VV+ G G+ 
Sbjct: 9   SAQKHVL--------HVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKM 60
Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSK----------PHVAIMDGI 115
           F +G D++    M  +       ++ R  +    L++ Y K          P +A + G 
Sbjct: 61  FTSGIDLMD---MASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGG 117
Query: 116 TMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-----LGL 170
            +GGG  +      R  T+   F + EV +G   DVG+   L RLP  +G       L  
Sbjct: 118 CIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGT---LQRLPKVIGNRSLVNELTF 174
Query: 171 TGATLSGEEMLFCGLATH 188
           T   +  +E L  GL + 
Sbjct: 175 TARKMMADEALDSGLVSR 192

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 7/168 (4%)
Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T+ +NRP   NAL   +   + K  +  + N  V  VV++G    F AG D+      ++
Sbjct: 17  TLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQ 76
Query: 81  EGRVEECKELFRTLYSFVYL--VATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF 138
                   +    +  FV L   A  SKP +  + G+ +G G  I + A    A    +F
Sbjct: 77  NPNAGPAGQ----VPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALF 132
Query: 139 AMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
            +P V +G  P+ G+S  L +  G H    L  T    + E  L  GL
Sbjct: 133 QIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG D+   +R +  
Sbjct: 22  VILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDA 81
Query: 82  GRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
           G     +++ R    + + L+  Y+KP +A+++G   GGG    V     +  ++  F +
Sbjct: 82  GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGL 141
Query: 141 PEVLIGFHPDVGSSYYLSRLPGHLGEYLG-LTGATLSGEEMLFCGLATH 188
            E+  G  P    S  ++   GH    +  +TG T  G++    GL   
Sbjct: 142 SEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNE 190

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 17/175 (9%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDV--------- 72
           + LN PH  NAL+T++V+ L +      ++  V  VV+   G +FCAG D+         
Sbjct: 24  LTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSP 83
Query: 73  VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLA 132
             AY M  E R  E   L R +            P +A +DG    GG G+       +A
Sbjct: 84  SSAYDMAVE-RAREMAALMRAIVESRL-------PVIAAIDGHVRAGGFGLVGACDIAVA 135
Query: 133 TEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLAT 187
             ++ FA+ E  IG  P + S   L +L         LTG           GL T
Sbjct: 136 GPRSSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLIT 190

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 23/195 (11%)
Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           S+Q HVL         V LNRP+  NA+N      + + +     ++    VVI G G+ 
Sbjct: 36  SAQKHVL--------HVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKM 87
Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY-------LVATYSKPHVAIMDGITMG 118
           F AG D++     + + + ++   +   L   +        ++    KP +A + G  +G
Sbjct: 88  FTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIG 147
Query: 119 GGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-----LGLTGA 173
           GG  +      R   +   F + EV +G   DVG+   L RLP  +G       L  T  
Sbjct: 148 GGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGT---LQRLPKVIGNQSLVNELAFTAR 204
Query: 174 TLSGEEMLFCGLATH 188
            +  +E L  GL + 
Sbjct: 205 KMMADEALGSGLVSR 219

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VL+E+R     + +NRP   NA+N ++   L    +  ++++ +   +I G G +FCAG
Sbjct: 8   EVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAG 67
Query: 70  GDV---VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
            D+   V    +L E                 +      KP +A ++G  + GG  + + 
Sbjct: 68  MDLKAFVSGEAVLSE-------------RGLGFTNVPPRKPIIAAVEGFALAGGTELVLS 114
Query: 127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYL-SRLPGHLGEYLGLTGATLSGEE 179
               +A     F +PEV  G     G    L +R+P  +   L LTG + + E+
Sbjct: 115 CDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAED 168

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 11/170 (6%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + L+RP  LNA++T M+  L+      E +  V  V++ G GR+FC+GGD+ G       
Sbjct: 19  IRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAA 78
Query: 82  GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141
                           V  + +  KP +A + G  +G G  +A+     +A   + F + 
Sbjct: 79  DAANRV----------VRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLA 128
Query: 142 EVLIGFHPDVGSSYYLSRLPGHL-GEYLGLTGATLSGEEMLFCGLATHYS 190
              +G  PD G+S  L  L G      + +T   +S       G+ +H +
Sbjct: 129 FTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHIT 178

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +LV+     RT+ LNRP   NAL+  + +   +     +N+  VD V++ G    FCAG 
Sbjct: 11  LLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGL 70
Query: 71  DVVGAYRMLKE-GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           D       LKE G   E  ++              +KP +  ++G  + GG  +A++   
Sbjct: 71  D-------LKELGDTTELPDISPKWPDM-------TKPVIGAINGAAVTGGLELALYCDI 116
Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG----EYLGLTGATLSGEEMLFCGL 185
            +A+E   FA     +G  P  G S    RLP  +G      + LTG  LS ++ L  GL
Sbjct: 117 LIASENAKFADTHARVGLMPTWGLSV---RLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173
Query: 186 ATH 188
            T 
Sbjct: 174 VTE 176

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Query: 13  VEERANS--RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           ++ RA+   R + LNRP  LN++N  +   L + ++   ++      VI G GR+F AGG
Sbjct: 30  IDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGG 89
Query: 71  DVVGAYRMLKE--GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           D    +  LKE     +   +  R     V  +A    P VA ++G  +G G  +   + 
Sbjct: 90  D----FGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSD 145
Query: 129 YRLATEKTVFAMPEVLIGF-HPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLAT 187
                E    A P V +G    D G   +   +   L +   LTG  +S +  +  GLA 
Sbjct: 146 IVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLAN 205
Query: 188 HYSLSAVC 195
           H +   V 
Sbjct: 206 HVADDPVA 213

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVD---FVVIKGNGRSFC 67
           V+ +E   ++ V+  R    NALNT ++    K+  +  N++  D    V+    G  FC
Sbjct: 7   VVKKEDGFTQIVLSTRSTEKNALNTEVI----KEMVNALNSAAADDSKLVLFSAAGSVFC 62
Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
            G D     R L+  R     E+  T+ +FV     + KP V  ++G  +G GA I    
Sbjct: 63  CGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC 122
Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHL-GEYLGLTGATLSGEEMLFCGLA 186
               A EK  F  P    G  PD  SS    ++ G      + + G  L+  E    GL 
Sbjct: 123 DLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLV 182
Query: 187 THYSLS 192
           +   L+
Sbjct: 183 SQVFLT 188

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVD---FVVIKGNGRSFC 67
           V+ +E   ++ V+  R    NALNT ++    K+  +  N++  D    V+    G  FC
Sbjct: 26  VVKKEDGFTQIVLSTRSTEKNALNTEVI----KEIVNALNSAAADDSKLVLFSAAGSVFC 81
Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
            G D     + L+  R     E+  T+ +FV     + KP V  ++G  +G GA I    
Sbjct: 82  CGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLC 141
Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHL-GEYLGLTGATLSGEEMLFCGLA 186
               A EK  F  P    G  PD  SS    ++ G      + + G  L+  E    GL 
Sbjct: 142 DLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLV 201
Query: 187 THYSLS 192
           +   L+
Sbjct: 202 SQVFLT 207

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 6/184 (3%)
Query: 11  VLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           VLV+  R     V LNRP  +NA+   ++    +      +++ V  VVI G G+ FC+G
Sbjct: 25  VLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSG 84
Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSK---PHVAIMDGITMGGGAGIAVH 126
            D   A  +   G + +     R++     ++ T  +   P +A ++G  +GGG  +A+ 
Sbjct: 85  ADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALA 144
Query: 127 ASYRLATEKTVFAMPEVLIGF-HPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCG 184
              R+A++   F    +  G    ++G SY L R  G      + LTG  +  +E    G
Sbjct: 145 CDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIG 204
Query: 185 LATH 188
           L + 
Sbjct: 205 LVSR 208

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR-SFCAGGDVVGAYRMLK 80
           V +NRP V NA     VA +   +    ++  V  +V+ G G  +FC+GGD     +   
Sbjct: 26  VTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGD---QKKRGH 82
Query: 81  EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
            G V E +     +     L+    KP +A++ G  +GGG  + V     +A +  +F  
Sbjct: 83  GGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQ 142
Query: 141 PEVLIG-FHPDVGSSYYLSRLPGH 163
               +G F    GS Y L+R+ GH
Sbjct: 143 TGPKVGSFDAGYGSGY-LARIVGH 165

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T+ LNRP  LN+ N  M A L +  +  E +  +  +++ G GR FCAG D +    +  
Sbjct: 27  TLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQD-LNDRNVDP 85
Query: 81  EGRVEECKELFRTLYS-FVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFA 139
            G   +        Y+  V  +A   KP +  ++G+  G GA +A+     +A     F 
Sbjct: 86  TGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFV 145
Query: 140 MPEVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTGATLSGEE 179
           M    +G  PD G ++ L R+ G      L L G  LS E+
Sbjct: 146 MAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQ 186

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T+ L RP   NALN+ +V  LT+      + S    +V+ G G +FCAG D+ G      
Sbjct: 33  TIELQRPERRNALNSQLVEELTQAIRKAGDGS-ARAIVLTGQGTAFCAGADLSG--DAFA 89
Query: 81  EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
               +   EL + + +          P V  ++G  +G G  +A+    R+      F  
Sbjct: 90  ADYPDRLIELHKAMDA-------SPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQF 142
Query: 141 PEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLATH 188
           P    G   D  S   LS L GH     + L+   L+ E  L  G+A  
Sbjct: 143 PTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANR 191

>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 6/160 (3%)
Query: 34  NTSMVALLTKQYESWENNSGVD---FVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL 90
           N S+   + ++ +S  + +  D    V++   G  FC G D +   R L + R  E  ++
Sbjct: 27  NNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKM 86
Query: 91  FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPD 150
              + +FV     + KP +  ++G  +G GA I        A EK  F  P    G  PD
Sbjct: 87  AEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPD 146
Query: 151 VGSSYYLSRLPG--HLGEYLGLTGATLSGEEMLFCGLATH 188
             S+    ++ G     E L L+G  L+ +E    GL + 
Sbjct: 147 GCSTVMFPKIMGGASANEML-LSGRKLTAQEACGKGLVSQ 185

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 4   KQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63
           +Q +++++  +      T+ LNRP   NA N  ++  L   +     ++ V  +V++ NG
Sbjct: 15  EQRTEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG 74
Query: 64  RSFCAGGDVVGAYRMLKEGRVE--ECKELFRTL-YSFVYLVATYSKPHVAIMDGITMGGG 120
           + F AG D+ G   +  +  +E     E  R L YS  +      KP +A + G  + GG
Sbjct: 75  KHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRW--RNVPKPSIAAVQGRCISGG 132
Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEM 180
             +       +A E  +F+ P VL+    D+G   Y     GH  E LG   A    +E+
Sbjct: 133 LLLCWPCDLIIAAEDALFSDPVVLM----DIGGVEYH----GHTWE-LGPRKA----KEI 179
Query: 181 LFCGLA 186
           LF G A
Sbjct: 180 LFTGRA 185

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 12/171 (7%)
Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T+ LNRP   NA N  ++  L   +     ++ V  ++++ NG+ F AG D+ G   + +
Sbjct: 35  TITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLRGGGEVPE 94
Query: 81  EGRVE-ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFA 139
           +  +E   +   R    +        KP +A + G  + GG  +       LA++  +F+
Sbjct: 95  KISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILASDDALFS 154
Query: 140 MPEVLIG-----FHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
            P  L+G     +H   G ++ L   P    E L  TG  L+ EE    G+
Sbjct: 155 DPVALMGIGGVEYH---GHTWELG--PRKAKEIL-FTGRALTAEEAERTGM 199

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           +V  E + ++  + L+ P   N L+  +   L +   +  N + +  ++++   R++ + 
Sbjct: 5   YVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSS 64
Query: 70  GDVVGAYRMLKEGRVE-ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           G  +    +    + +   +E+   L   V  + T  K  VA+++G   GGG  + +   
Sbjct: 65  GPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACD 124
Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-LGLTGATLSGEEMLFCGL 185
            R+A  +  F      +G  PD+G+SY+L R+ G+     L L G   + EE L  GL
Sbjct: 125 RRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGL 182

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 76/184 (41%), Gaps = 7/184 (3%)
Query: 3   LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62
           + +  Q  V VE+     TVILNRPH  NA++    A L   +  ++ +      V+ G+
Sbjct: 5   MSEEMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGD 64
Query: 63  GRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAG 122
             +FCAG D+    + +   R  E             L    SKP +A + G  + GG  
Sbjct: 65  NGTFCAGADL----KAMGTDRGNELHPHGPGPMGPSRL--RLSKPVIAAISGHAVAGGIE 118
Query: 123 IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEML 181
           +A+    R+  E  V  +     G     G +  L RL GH     L LTG  +   E L
Sbjct: 119 LALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEAL 178
Query: 182 FCGL 185
             GL
Sbjct: 179 DIGL 182

>pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 50  NNSGV--DFVVIKGNGRSFCAGGDVVGAYRMLKEGR----VEECKELFRTLYSFVYLVAT 103
           N +GV    VV+  +   F  GGD+    ++++EG     ++  +   R +++F   V  
Sbjct: 80  NTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAF--HVGL 137
Query: 104 YSKPH-VAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGS-SYYLSRLP 161
            ++ H +A++ G  +GGG   A+     +A E  +  +PEVL    P +G+ S+   R+ 
Sbjct: 138 GARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRIS 197
Query: 162 GHLGEYLGLTGATLSGEEMLFCGL 185
            HL + + L G   S E++L  GL
Sbjct: 198 AHLAQKIMLEGNLYSAEQLLGMGL 221

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 3   LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG- 61
           +KQ     ++ E       + +NRP V NA     V  +   +    ++S +  +++ G 
Sbjct: 6   VKQYDYEDIIYETYNGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGA 65
Query: 62  NGRSFCAGGD--VVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
            G++FC+GGD  V G    + E  +     L         L+    KP +A++ G  +GG
Sbjct: 66  GGKAFCSGGDQKVRGHGGYVGEDEIPRLNVL-----DLQRLIRVIPKPVIAMVAGYAIGG 120
Query: 120 GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH 163
           G  + V     +A +  +F      +G       + YL+R+ GH
Sbjct: 121 GHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGAGYLARIVGH 164

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + +  P   NAL+   +  +T      E +  V  V+I G   +FCAG         L+E
Sbjct: 16  ITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGF-------YLRE 68
Query: 82  GRVEE----CKELFRT----LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT 133
             +++     ++ FR      +  ++ +    +P +A ++G+  GGG GI++ +   +  
Sbjct: 69  IPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICA 128
Query: 134 EKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLAT 187
           +   F      IG   D  +SY L+R+ G      L LT  TL  EE    GL +
Sbjct: 129 DSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVS 183

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + +  P   NAL+   +  +T      E +  V  V+I G   +FCAG         L+E
Sbjct: 16  ITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGF-------YLRE 68
Query: 82  GRVEE----CKELFRT----LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT 133
             +++     ++ FR      +  ++ +    +P +A ++G+  GGG GI++ +   +  
Sbjct: 69  IPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICA 128
Query: 134 EKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLAT 187
           +   F      IG   D  +SY L+R+ G      L LT  TL  EE    GL +
Sbjct: 129 DSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVS 183

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
           V  E     R + L+ P+  N  + ++   +         +  V  VV+ G   RSF AG
Sbjct: 2   VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAG 61
Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD     ++ +   +EE  +    LY  V  V   +KP +A +DG  +G G   A+    
Sbjct: 62  GDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNV---NKPTIAAVDGYAIGMGFQFALMFDQ 118
Query: 130 RLATEKTVFAMPEVLIGFHPDVGSS 154
           RL      F MPE+  G    VG++
Sbjct: 119 RLMASTANFVMPELKHGIGCSVGAA 143

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 12/169 (7%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLK 80
           + LNR    N+L+ +++  L          +    V++ G G ++FCAG D       LK
Sbjct: 22  ISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGAD-------LK 74
Query: 81  E---GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTV 137
           E      E+ +     + +    V    +P +A ++GI +GGG  +++   +R+A E   
Sbjct: 75  ERAGXNEEQVRHAVSXIRTTXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESAS 134
Query: 138 FAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
             + E  +   P  G +  L RL G    + L  TG  +S +E    GL
Sbjct: 135 LGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGL 183

>pdb|3HP0|A Chain A, Crystal Structure Of A Putative Polyketide Biosynthesis Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis Length = 267

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 7/166 (4%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           +  +RP   N +N +++    +     E  S V  VV++G    FC G D    Y+  K 
Sbjct: 20  ITFHRPEANNTINDTLIEECLQVLNQCET-STVTVVVLEGLPEVFCFGADFQEIYQEXKR 78
Query: 82  GRVEECKELFRTLYSFVYLVATYSKPHVAI--MDGITMGGGAGIAVHASYRLATEKTVFA 139
           GR +   +    LY     + T   P+V I  + G    GG G        +A +   F+
Sbjct: 79  GRKQASSQ--EPLYDLWXKLQT--GPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFS 134
Query: 140 MPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
           + E+L G +P     + + R+      Y  L    +S +E    GL
Sbjct: 135 LSELLFGLYPACVLPFLIRRIGRQKAHYXTLXTKPISVQEASEWGL 180

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T+ LNRP   NALN  ++A L        +   +  VVI G G  F AG D       L 
Sbjct: 28  TIGLNRPKKRNALNDGLMAALKDCLTDIPDQ--IRAVVIHGIGDHFSAGLD-------LS 78
Query: 81  EGRVEECKE--LFRTLYSFVYLVATYSK-PHVAIMDGITMGGGAGIAVHASYRLATEKTV 137
           E R  +  E  +    +  V+    Y + P +A + G  +GGG  +A  A  R+A     
Sbjct: 79  ELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAY 138
Query: 138 FAMPEVLIGFHPDVGSSYYLSRLPG--HLGEYLGLTGATLSGEEMLFCGLATH 188
           +A+PE   G     G S  L RL G   + + + LTG   S  E +  G + +
Sbjct: 139 YALPEGSRGIFVGGGGSVRLPRLIGVARMADMM-LTGRVYSAAEGVVHGFSQY 190

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 4/169 (2%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           +  NRP   NA+NT     + +  ++   +  +   V+ GNG  + +G D+     +   
Sbjct: 39  IXFNRPKKKNAINTEXYHEIXRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPG 97
Query: 82  GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP 141
           G  E+ K     L  FV     + KP +A+++G  +G    +        A+++  F  P
Sbjct: 98  GVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTP 157
Query: 142 EVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFCGLATH 188
              +G  P+  SSY   ++  P    E L + G  L+  E    GL T 
Sbjct: 158 FSHLGQSPEGCSSYTFPKIXSPAKATEXL-IFGKKLTAGEACAQGLVTE 205

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 6/166 (3%)
Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
           T++++RP   NA+   +   +    +       +  VV+ G    F AG D+      L+
Sbjct: 36  TLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMP----ELR 90
Query: 81  EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM 140
                E     R     +  VA   KP VA + G  +G G  +A+ A +R++ +   F  
Sbjct: 91  TLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGA 150
Query: 141 PEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
            E+L G  P  G    L+R+ G    + L  +G     EE L  GL
Sbjct: 151 TEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGL 196

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 16/175 (9%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE 81
           + +  P   NAL+   +  +T      E +  V  V+I G   +FCAG         L+E
Sbjct: 16  ITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGF-------YLRE 68
Query: 82  GRVEE----CKELFRT----LYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT 133
             +++     ++ FR         ++ +    +P +A ++G+  GGG GI++ +   +  
Sbjct: 69  IPLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICA 128
Query: 134 EKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLAT 187
           +   F      IG   D  +SY L+R+ G      L LT  TL  EE    GL +
Sbjct: 129 DSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVS 183

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 31  NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDV--VGAYRM-LKEGRVEEC 87
           + L+ + +A L         +  V  +VI G GR FCAG D+  +G +R    EGR    
Sbjct: 28  HPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAF-V 86
Query: 88  KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIG- 146
            +LF    +    +A   KP +A+++GI    G  +        A+    F +P V  G 
Sbjct: 87  TDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQLXAACDLAYASPAARFCLPGVQNGG 146
Query: 147 --FHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGL 185
               P V  S  + R          LTGAT   +  L  GL
Sbjct: 147 FXTTPAVAVSRVIGR---RAVTEXALTGATYDADWALAAGL 184

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 1/165 (0%)
Query: 24  LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR 83
           +NR    NA +  ++  +  + +S  N++ V  +V+K NG+ F AG D+     M     
Sbjct: 19  MNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTE 78
Query: 84  VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV 143
            EE  E    L + +Y ++   KP +A++ G   GGGAG+A      +A+    F   EV
Sbjct: 79  -EENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEV 137
Query: 144 LIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATH 188
            +G  P V S Y +  +     + L ++             L  H
Sbjct: 138 KLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQH 182

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGD--VVGAYRM 78
           + +NRP V NA     V  + +       +  +  +++ G G ++FC+GGD  V G Y  
Sbjct: 41  ITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDY-- 98
Query: 79  LKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF 138
              G  ++       +  F   + T  KP VA++ G ++GGG  + +     +A +  +F
Sbjct: 99  --GGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIF 156
Query: 139 AMPEVLIGFHPDVGSSYYLSRLPGH 163
                 +G       + Y++R+ G 
Sbjct: 157 GQTGPKVGSFDGGWGASYMARIVGQ 181

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 30  LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE 89
           +NA++ +++  +    +   ++  V  +VI G   +FCAG D+ G +     G       
Sbjct: 41  VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHG-FSAFTPGL------ 93
Query: 90  LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHP 149
               L S V  +  Y KP +A + G+ +GGG  +A+   YR+A  K    +PEV +G  P
Sbjct: 94  ---ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILP 150
Query: 150 DVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
               +  L R+ G  +   L  +G  LS +E L  G+
Sbjct: 151 GARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGI 187

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 23  ILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG 82
           ++N P  +N+L+  ++  L   YE   + + V  +VI G    F  G D+ G +  +++G
Sbjct: 23  LINPP--VNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISG-FGEMQKG 79
Query: 83  RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPE 142
            V+E K  + ++     L+    KP VA +DG+ +GGG  +A+    R++       +PE
Sbjct: 80  NVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPE 139
Query: 143 VLIGFHPDVGSSYYLSRLPG 162
           + +G  P  G +  L RL G
Sbjct: 140 LQLGVIPGFGGTQRLPRLVG 159

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 30  LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE 89
           +NA++ +++  +    +   ++  V  +VI G   +FCAG D+ G +     G       
Sbjct: 26  VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHG-FSAFTPGL------ 78
Query: 90  LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHP 149
               L S V  +  Y KP +A + G+ +GGG  +A+   YR+A  K    +PEV +G  P
Sbjct: 79  ---ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILP 135
Query: 150 DVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
               +  L R+ G  +   L  +G  LS +E L  G+
Sbjct: 136 GARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGI 172

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGD--VVGAYRM 78
           + +NRP V NA     V  + +       +  +  +++ G G ++FC+GGD  V G Y  
Sbjct: 37  ITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDY-- 94
Query: 79  LKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF 138
              G  ++       +  F   + T  KP VA++ G ++GGG  + +     +A +  +F
Sbjct: 95  --GGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIF 152
Query: 139 AMPEVLIGFHPDVGSSYYLSRLPGH 163
                 +G       + Y++R+ G 
Sbjct: 153 GQTGPKVGSFDGGWGASYMARIVGQ 177

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 8/190 (4%)
Query: 3   LKQSSQIHVLVEERANSRTVIL--NRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           +K   ++ V   E  N   V+L  NR +  N+L+ +++ +L+K  ++ +++  V  ++I+
Sbjct: 4   MKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIR 63
Query: 61  GNGRS-FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
                 FCAG D+    +M       E       + + +  +A    P +A +DG+ +GG
Sbjct: 64  SEVPGIFCAGADLKERAKM----SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGG 119
Query: 120 GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGE 178
           G  +A+    R+A       + E  +   P  G +  L R  G  L + L  +   L G+
Sbjct: 120 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGK 179
Query: 179 EMLFCGLATH 188
           E    GL +H
Sbjct: 180 EAKAVGLISH 189

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 107 PHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG 162
           P VA ++GI +GGG  + + A +R+  +     +PEV +G +P  G +  L RL G
Sbjct: 105 PTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIG 160

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 8/138 (5%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGD--VVGAYRM 78
           + +NRP V NA     V    +       +  V  +++ G G ++FCAGGD  V G Y  
Sbjct: 40  ITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDY-- 97
Query: 79  LKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF 138
              G  ++       +  F   + T  KP VA + G ++GGG  +       +A E  +F
Sbjct: 98  --GGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLTIAAENAIF 155
Query: 139 AMPEVLIG-FHPDVGSSY 155
                 +G F    G+SY
Sbjct: 156 GQTGPKVGSFDGGWGASY 173

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 80/187 (42%), Gaps = 10/187 (5%)
Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           H+ VE      TV L RP  LNAL     A L            V  +V+ G GR FC+G
Sbjct: 18  HLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSG 77
Query: 70  GDV---VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
           GDV   +GA       R+    +  R     V  V     P +A + G+  G GA +A+ 
Sbjct: 78  GDVDEIIGATLSXDTARL---LDFNRXTGQVVRAVRECPFPVIAALHGVAAGAGAVLALA 134
Query: 127 ASYRLATEKTVFAMPEVLIGFH-PDVGSSYYLSRLP--GHLGEYLGLTGATLSGEEMLFC 183
           A +R+A   T FA     +G    D G++Y L R+   GH    L L G T+   E    
Sbjct: 135 ADFRVADPSTRFAFLFTRVGLSGGDXGAAYLLPRVVGLGHATRLLXL-GDTVRAPEAERI 193
Query: 184 GLATHYS 190
           GL +  +
Sbjct: 194 GLISELT 200

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 16/162 (9%)
Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           S+ + + +E R  + T  L+RP   NAL+  +V  L    ++  +   V  +V  G GR+
Sbjct: 4   SASLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDA-AHREQVPLLVFAGAGRN 62
Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPH--VAIMDGITMGGGAGI 123
           F AG D    Y    EG +     L R +   + L      P   +A+  G   G G  +
Sbjct: 63  FSAGFDFTD-YETQSEGDL-----LLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDL 116
Query: 124 AVHASYRLATEKTVFAMPEVLIG-------FHPDVGSSYYLS 158
                +R  T +  F MP +  G       F   VG+   LS
Sbjct: 117 FAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQALS 158

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 30  LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKE 89
           +NA++ +++  +    +   ++  V  +VI G   +FCAG D+ G +     G       
Sbjct: 41  VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHG-FSAFTPGL------ 93
Query: 90  LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHP 149
               L S V  +  Y KP +A + G+ +GGG  +A+   YR+A  K    +P V +G  P
Sbjct: 94  ---ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPAVTLGILP 150
Query: 150 DVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGL 185
               +  L R+ G  +   L  +G  LS +E L  G+
Sbjct: 151 GARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGI 187

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 24  LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGD-------VVGAY 76
           LNRP   NA + +M+  L      +E ++ +   V+ G G  F AG D       + G  
Sbjct: 24  LNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA 83
Query: 77  RMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKT 136
            +  EG +   +   R L          SKP +  + G  +  G  +A+ A   +A E  
Sbjct: 84  SLTPEGGINPWQVDGRQL----------SKPLLVAVHGKVLTLGIELALAADIVIADETA 133
Query: 137 VFAMPEVLIGFHPDVGSSYYLSRLPG 162
            FA  EV  G +P  G++    R  G
Sbjct: 134 TFAQLEVNRGIYPFGGATIRFPRTAG 159

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
Query: 6   SSQIHVLVEERANSRTVI-LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR 64
            +Q  VL E       +I  NR   LNA    + A      +  E + G+  +V+ G GR
Sbjct: 26  DAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85
Query: 65  SFCAG-----GDVVGAY-RMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMG 118
            FCAG      D    Y + + + +     +L        + V    KP +A ++G  +G
Sbjct: 86  GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPP--HFVTMLRKPVIAAINGPCVG 143
Query: 119 GGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSG 177
            G   A+    R A     FA      G   + G S+ L RL    +   L L+G T   
Sbjct: 144 IGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLA 203
Query: 178 EEMLFCGL 185
           EE    GL
Sbjct: 204 EEAAQLGL 211

>pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 30/192 (15%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYR---- 77
           +  NRP   NA+       L+   E  + +  V  +++ G G  FCAG D+  AY     
Sbjct: 48  ITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDL-SAYAEGSS 106
Query: 78  ----------MLKEGRVEECKEL----------FRTLYSFVYLVATY---SKPHVAIMDG 114
                      +  G+ +    L          ++ +  FV   A+     KP V  + G
Sbjct: 107 SAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHG 166
Query: 115 ITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGAT 174
             + GG  IA+HA   +A        P + +   P  G   +  RL     + L  TG  
Sbjct: 167 YCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG--LWAHRLGDQRAKRLLFTGDC 224
Query: 175 LSGEEMLFCGLA 186
           ++G +    GLA
Sbjct: 225 ITGAQAAEWGLA 236

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 22  VILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR------SFCAGGD--VV 73
           +++NRPH  NA     V  L   + +   ++ +  V++ G G       +FC+GGD  V 
Sbjct: 23  IVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVR 82
Query: 74  GAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT 133
           G     + G +++       +     L+ +  K  +A++ G  +GGG  + +     +A 
Sbjct: 83  G-----EGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAA 137
Query: 134 EKTVFAMPEVLIG-FHPDVGSSYYLSRLPGH 163
           +  +F      +G F    GSS YL+R+ G 
Sbjct: 138 DNAIFGQTGPKVGSFDGGFGSS-YLARIVGQ 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-95
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	5e-93
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	4e-37
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	3e-36
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	8e-36
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-35
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-35
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-35
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	3e-35
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	7e-35
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	9e-35
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	1e-34
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	1e-34
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	1e-34
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-34
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	1e-33
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	2e-33
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	5e-33
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	8e-33
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	1e-32
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-32
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	2e-31
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	4e-31
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	1e-30
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	3e-30
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	3e-30
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	3e-30
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	4e-30
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	6e-30
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	2e-29
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	2e-29
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	2e-29
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	6e-29
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	2e-28
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	4e-28
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	4e-28
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	8e-28
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	1e-27
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	3e-27
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	3e-27
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	4e-27
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	6e-27
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	6e-27
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	2e-26
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	2e-26
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	2e-26
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	2e-26
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-26
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	5e-26
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	2e-25
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	3e-25
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	4e-25
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	6e-25
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	6e-25
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	7e-25
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-24
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	2e-24
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	1e-23
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	2e-23
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	2e-23
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-23
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-23
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	5e-23
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	5e-22
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-21
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	2e-21
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	6e-21
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	6e-21
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	2e-20
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	2e-20
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	4e-20
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-18
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-17

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score =  281 bits (721), Expect = 1e-95
 Identities = 77/189 (40%), Positives = 110/189 (58%), Gaps = 2/189 (1%)

Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-R 64
            +   VL+ ++  +  + LNRP  LNAL  +M+  +  Q + WE +     ++IKG G +
Sbjct: 3   DAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62

Query: 65  SFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIA 124
           +FCAGGD+       K  + +     FR  Y     V +  KP+VA++ GITMGGG G++
Sbjct: 63  AFCAGGDIRVISEAEKAKQ-KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLS 121

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCG 184
           VH  +R+ATEK +FAMPE  IG  PDVG  Y+L RL G LG +L LTG  L G ++   G
Sbjct: 122 VHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAG 181

Query: 185 LATHYSLSA 193
           +ATH+  S 
Sbjct: 182 IATHFVDSE 190

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score =  276 bits (707), Expect = 5e-93
 Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 9/192 (4%)

Query: 11  VLVEERANS-----RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-R 64
           V+ +  A +       V LN    LNAL+  MV  +T Q   W+ +  +  VV+ G+G +
Sbjct: 39  VVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEK 98

Query: 65  SFCAGGDVVGAYRMLKEGR---VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGA 121
           +FCAGGDV   Y      +    E  K  F   Y   YL+ TY KP +   DGI MGGG 
Sbjct: 99  AFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGL 158

Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEML 181
           G+   AS+++ TE +  AMPEV IG +PDVG SY+L+R+PG +G +LGLT   ++  +  
Sbjct: 159 GLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGKMGLFLGLTAYHMNAADAC 218

Query: 182 FCGLATHYSLSA 193
           + GLA HY    
Sbjct: 219 YVGLADHYLNRD 230

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  128 bits (325), Expect = 4e-37
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 4/181 (2%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            ++V        ++ NRP   NA+NT M   + +  ++   +  +   V+ GNG  + +G
Sbjct: 27  TLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSG 85

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+     +   G  E+ K     L  FV     + KP +A+++G  +G    +      
Sbjct: 86  NDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDA 145

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHL--GEYLGLTGATLSGEEMLFCGLAT 187
             A+++  F  P   +G  P+  SSY   ++       E L + G  L+  E    GL T
Sbjct: 146 VYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML-IFGKKLTAGEACAQGLVT 204

Query: 188 H 188
            
Sbjct: 205 E 205

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  124 bits (315), Expect = 8e-36
 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 8/182 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            + +++    RT+ LNRP  LNA N ++     +      ++  V  V++ G+GR F AG
Sbjct: 7   TLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAG 66

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+     M          E        +  +A + KP +  ++G+ +G GA I  +A  
Sbjct: 67  TDLAE---MQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADL 123

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH---LGEYLGLTGATLSGEEMLFCGLA 186
              +       P   +G  P+  SSY L +L G        L ++   +  EE L  GL 
Sbjct: 124 AFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAW--LLMSSEWIDAEEALRMGLV 181

Query: 187 TH 188
             
Sbjct: 182 WR 183

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  124 bits (314), Expect = 1e-35
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 11/180 (6%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            + VE       + L+RP  LNA++T M+  L+      E +  V  V++ G GR+FC+G
Sbjct: 7   GISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSG 66

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD+ G       G  +    + R + S         KP +A + G  +G G  +A+    
Sbjct: 67  GDLTG---GDTAGAADAANRVVRAITSL-------PKPVIAGVHGAAVGFGCSLALACDL 116

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
            +A   + F +    +G  PD G+S  L  L G      + +T   +S       G+ +H
Sbjct: 117 VVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISH 176

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  124 bits (315), Expect = 1e-35
 Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 9/183 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           H+         T+ +NRP   NAL   +   + K  +  + N  V  VV++G    F AG
Sbjct: 6   HLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAG 65

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLY-SFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
            D+      +   +        +      +   A  SKP +  + G+ +G G  I + A 
Sbjct: 66  NDMKD---FMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQAD 122

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH---LGEYLGLTGATLSGEEMLFCGL 185
              A    +F +P V +G  P+ G+S  L +  G+       L  T    + E  L  GL
Sbjct: 123 LVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAE--LLFTAKKFNAETALQAGL 180

Query: 186 ATH 188
              
Sbjct: 181 VNE 183

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  124 bits (314), Expect = 1e-35
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 7/181 (3%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            + V  +A+   +  +RP   N +N +++    +     E ++ V  VV++G    FC G
Sbjct: 8   TIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETST-VTVVVLEGLPEVFCFG 66

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D    Y+ +K GR +        LY     + T     ++ + G    GG G       
Sbjct: 67  ADFQEIYQEMKRGRKQ--ASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDI 124

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFCGLAT 187
            +A +   F++ E+L G +P      +L R            L    +S +E    GL  
Sbjct: 125 AIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAHYMT-LMTKPISVQEASEWGLID 182

Query: 188 H 188
            
Sbjct: 183 A 183

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  124 bits (313), Expect = 3e-35
 Identities = 54/183 (29%), Positives = 74/183 (40%), Gaps = 6/183 (3%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           H+ VE      TV L RP  LNAL     A L            V  +V+ G GR FC+G
Sbjct: 18  HLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSG 77

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GDV                +  R     V  V     P +A + G+  G GA +A+ A +
Sbjct: 78  GDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADF 137

Query: 130 RLATEKTVFAMPEVLIGFHP-DVGSSYYLSRLPGH---LGEYLGLTGATLSGEEMLFCGL 185
           R+A   T FA     +G    D+G++Y L R+ G        L + G T+   E    GL
Sbjct: 138 RVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATR--LLMLGDTVRAPEAERIGL 195

Query: 186 ATH 188
            + 
Sbjct: 196 ISE 198

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  123 bits (311), Expect = 7e-35
 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 3/181 (1%)

Query: 10  HVLVEERANSRTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            ++V++      ++L+ R    NALNT ++  +     S   +     V+    G  FC 
Sbjct: 24  DIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCC 82

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           G D     + L+  R     E+  T+ +FV     + KP V  ++G  +G GA I     
Sbjct: 83  GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 142

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLAT 187
              A EK  F  P    G  PD  SS    ++ G      + + G  L+  E    GL +
Sbjct: 143 LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVS 202

Query: 188 H 188
            
Sbjct: 203 Q 203

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  122 bits (308), Expect = 9e-35
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 2/181 (1%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR-SFCA 68
           +V  E + ++  + L+ P   N L+  +   L +   +  N + +  ++++   R  F +
Sbjct: 5   YVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSS 64

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           G  +        +      +E+   L   V  + T  K  VA+++G   GGG  + +   
Sbjct: 65  GPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACD 124

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLAT 187
            R+A  +  F      +G  PD+G+SY+L R+ G      L L G   + EE L  GL  
Sbjct: 125 RRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQ 184

Query: 188 H 188
            
Sbjct: 185 E 185

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  121 bits (307), Expect = 1e-34
 Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 14/184 (7%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +  E +     + LNRP  LNA    M A +TK  +    +  V  VVI G GR+FCAG
Sbjct: 4   TIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAG 63

Query: 70  GDVVGAYRMLKEGRV--EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
            D+ G    +  G V       + + L+          KP VA ++G   G G  +A+  
Sbjct: 64  EDLSGVTEEMDHGDVLRSRYAPMMKALHHL-------EKPVVAAVNGAAAGAGMSLALAC 116

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH---LGEYLGLTGATLSGEEMLFCG 184
            +RL +EK  FA   + +G  PD G  YYL RL G    L   L + G  ++ EE    G
Sbjct: 117 DFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE--LAVLGEKVTAEEAAALG 174

Query: 185 LATH 188
           LAT 
Sbjct: 175 LATK 178

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  122 bits (309), Expect = 1e-34
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 11/198 (5%)

Query: 1   MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           M  +      +          + L  P  LNAL       L +  E  + N  V F +I+
Sbjct: 1   MSQEIRQNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQ 60

Query: 61  GNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL-------VATYSKPHVAIMD 113
            +GR F +G D  G  +   +   +   E  + + +FV            +SK  +  ++
Sbjct: 61  SSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLN 120

Query: 114 GITMGGGAGIAVHASYRLA-TEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHL--GEYLGL 170
           G  +G  A +        +  +K     P   +G   + G++  L    G     E L +
Sbjct: 121 GPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECL-M 179

Query: 171 TGATLSGEEMLFCGLATH 188
                  + M   G  + 
Sbjct: 180 FNKPFKYDIMCENGFISK 197

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  122 bits (308), Expect = 1e-34
 Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 3/184 (1%)

Query: 7   SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
                          + LN PH  NAL+T++V+ L +      ++  V  VV+   G +F
Sbjct: 9   VDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTF 68

Query: 67  CAGGDVVGAYRMLKEGRVEEC-KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
           CAG D+  A          +   E  R + + +  +     P +A +DG    GG G+  
Sbjct: 69  CAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVG 128

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCG 184
                +A  ++ FA+ E  IG  P + S   L +L       Y  LTG           G
Sbjct: 129 ACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKLSARAAARYY-LTGEKFDARRAEEIG 187

Query: 185 LATH 188
           L T 
Sbjct: 188 LITM 191

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  121 bits (306), Expect = 2e-34
 Identities = 39/181 (21%), Positives = 73/181 (40%), Gaps = 3/181 (1%)

Query: 10  HVLVEERANSRTVI-LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            ++V ++     ++   +    N+LN  ++  +     +   +     V++   G  FC 
Sbjct: 6   DIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCC 64

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           G D +   R L + R  E  ++   + +FV     + KP +  ++G  +G GA I     
Sbjct: 65  GLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD 124

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLAT 187
              A EK  F  P    G  PD  S+    ++ G      + L+G  L+ +E    GL +
Sbjct: 125 VVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVS 184

Query: 188 H 188
            
Sbjct: 185 Q 185

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  119 bits (301), Expect = 1e-33
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 12/185 (6%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +          + +  P   NAL+   +  +T      E +  V  V+I G   +FCAG
Sbjct: 4   AIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSF----VYLVATYSKPHVAIMDGITMGGGAGIAV 125
             +     +  +  V   ++ FR    +    ++ +    +P +A ++G+  GGG GI++
Sbjct: 64  FYLRE---IPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISL 120

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH---LGEYLGLTGATLSGEEMLF 182
            +   +  +   F      IG   D  +SY L+R+ G    +   L LT  TL  EE   
Sbjct: 121 ASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAME--LMLTNRTLYPEEAKD 178

Query: 183 CGLAT 187
            GL +
Sbjct: 179 WGLVS 183

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  119 bits (300), Expect = 2e-33
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 17/187 (9%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +L E +     + +NR    NA +  ++  +  + +S  N++ V  +V+K NG+ F AG
Sbjct: 5   DLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAG 64

Query: 70  GDVVGAYRMLKEGRVE------ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGI 123
            D+     M      E          L  ++           KP +A++ G   GGGAG+
Sbjct: 65  ADLTWMQSMANFTEEENLEDSLVLGNLMYSISQS-------PKPTIAMVQGAAFGGGAGL 117

Query: 124 AVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEML 181
           A      +A+    F   EV +G  P V S  Y+ R            ++          
Sbjct: 118 AAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAKMLF-MSAEVFDATRAY 175

Query: 182 FCGLATH 188
              L  H
Sbjct: 176 SLNLVQH 182

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  118 bits (297), Expect = 5e-33
 Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 3/180 (1%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +           I  R   LNA+  ++   L + +   E   GV  V+++G G  F AG
Sbjct: 11  GLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAG 70

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           G       M      E    +F      V     + +P VA ++ + +G G  +A+ A  
Sbjct: 71  GSFGLIEEM--RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADI 128

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
            +  + T      + +G      +      L G    +Y  L    L+GEE    GL   
Sbjct: 129 AVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVAL 188

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  117 bits (296), Expect = 8e-33
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 13/185 (7%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            + V      R + LNRP  LN++N  +   L + ++   ++      VI G GR+F AG
Sbjct: 29  EIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAG 88

Query: 70  GDV-----VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIA 124
           GD      + A   L+   + + +E+   +            P VA ++G  +G G  + 
Sbjct: 89  GDFGYLKELSADADLRAKTIRDGREIVLGMARC-------RIPVVAAVNGPAVGLGCSLV 141

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFC 183
             +      E    A P V +G     G            L +   LTG  +S +  +  
Sbjct: 142 ALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVEL 201

Query: 184 GLATH 188
           GLA H
Sbjct: 202 GLANH 206

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  116 bits (293), Expect = 1e-32
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 12/180 (6%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
            L E       + +      N  + S+V  L   +     N     V++ G G  F +G 
Sbjct: 5   QLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGA 64

Query: 71  DVVGAYRMLKEGRVE-ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
                  ++++ R E E  +L   +            P +A M G + GGG  + ++A +
Sbjct: 65  SKEF---LIRKTRGEVEVLDLSGLILDC-------EIPIIAAMQGHSFGGGLLLGLYADF 114

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
            + ++++V+A   +  GF P   +S  L    G  L + +  TG    G+E+   G+   
Sbjct: 115 VVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFP 174

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  117 bits (295), Expect = 1e-32
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 5/181 (2%)

Query: 10  HVLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            +  E   +    ++L+ P  LN++   M   L   +   + +  V  V+++G G++F +
Sbjct: 14  SLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSS 72

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           GG           G  E    + R     V  +    KP V+ + G  +G G  +A+ A 
Sbjct: 73  GGSF--ELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLAD 130

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLAT 187
             +A+           +G      ++     L G    +Y  LT  TLSGEE    GL +
Sbjct: 131 ISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVS 190

Query: 188 H 188
            
Sbjct: 191 T 191

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  113 bits (285), Expect = 2e-31
 Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 11/185 (5%)

Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           S+ + + +E R  + T  L+RP   NAL+  +V  L    ++      V  +V  G GR+
Sbjct: 4   SASLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRN 62

Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
           F AG D        +     +       +   +  VA      +A+  G   G G  +  
Sbjct: 63  FSAGFDF----TDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFA 118

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFC 183
              +R  T +  F MP +  G       +     +         L  +      +E    
Sbjct: 119 ACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL-GSARAFDADEARRI 174

Query: 184 GLATH 188
           G    
Sbjct: 175 GFVRD 179

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  112 bits (283), Expect = 4e-31
 Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 7/181 (3%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           ++ +E       V ++         ++    L   +     +     V++ G G SFC  
Sbjct: 17  NIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNE 76

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D          G   +  E+       +  + +   P +A ++G  +     I V +  
Sbjct: 77  IDF----TSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDI 131

Query: 130 RLATEKTVFA-MPEVLIGFHPDVGSSYYLSRLPGHL-GEYLGLTGATLSGEEMLFCGLAT 187
            LA E   F   P    G  P  G+      + G   G Y  LTG  L     L  G   
Sbjct: 132 VLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVN 191

Query: 188 H 188
            
Sbjct: 192 E 192

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  112 bits (281), Expect = 1e-30
 Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 8/180 (4%)

Query: 11  VLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           +L E  +    T+ L R    + L+ +M+A L         +  V  +VI G GR FCAG
Sbjct: 8   LLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAG 66

Query: 70  GDV--VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
            D+  +G +R   +       +LF    + +  +A   KP +A+++GI    G  +    
Sbjct: 67  HDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAAC 126

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFCGL 185
               A+    F +P V  G       +  +SR+     + E   LTGAT   +  L  GL
Sbjct: 127 DLAYASPAARFCLPGVQNGGFCTTP-AVAVSRVIGRRAVTEMA-LTGATYDADWALAAGL 184

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  110 bits (278), Expect = 3e-30
 Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 5/180 (2%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           ++  E+ +   V LN P   N L+  M   L +  +  E + GV  VV+ G G++F AG 
Sbjct: 1   MVQVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGA 60

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           D +     + E   EE      +L    + V TY KP VA ++G  + GGAG+A+     
Sbjct: 61  D-LAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFCGLATH 188
           +  E+      EV IGF   + S   L R        + L LTG  +   E    GL   
Sbjct: 120 VMDEEARLGYTEVKIGFVAALVSV-ILVRAVGEKAAKDLL-LTGRLVEAREAKALGLVNR 177

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  111 bits (279), Expect = 3e-30
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 2/178 (1%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            V VE       VILNRP   NA++ ++   +    E+ E +     +V+ G G ++ AG
Sbjct: 10  TVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAG 69

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHAS 128
            D+   +R +  G     +++ R    + + L+  Y+KP +A+++G   GGG    V   
Sbjct: 70  MDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACD 129

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGL 185
             +  ++  F + E+  G  P    S  ++   GH       +TG T  G++    GL
Sbjct: 130 LAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGL 187

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  110 bits (278), Expect = 3e-30
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 10/182 (5%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +  E R     + L+ P   N+    +   L   Y+  +++  V  +V+ G   +FC+G
Sbjct: 8   ELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSG 67

Query: 70  GDVVGAYRMLKE-GRVEECKELFRTLYSFVYL-VATYSKPHVAIMDGITMGGGAGIAVHA 127
                    +                 S V         P +A ++G  +G G  +A+HA
Sbjct: 68  AQ-------ISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHA 120

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLA 186
             R+  E+  +A+P+V  G  PD  + + L RL G  +   L LTGA+ S +  +  GLA
Sbjct: 121 DIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLA 180

Query: 187 TH 188
             
Sbjct: 181 NR 182

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  109 bits (276), Expect = 4e-30
 Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 16/181 (8%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +LV+     RT+ LNRP   NAL+  + +   +     +N+  VD V++ G    FCAG
Sbjct: 10  VLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAG 69

Query: 70  GDVVGAYRMLKE-GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
            D       LKE G   E  ++              +KP +  ++G  + GG  +A++  
Sbjct: 70  LD-------LKELGDTTELPDISPKW-------PDMTKPVIGAINGAAVTGGLELALYCD 115

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLAT 187
             +A+E   FA     +G  P  G S  L +  G  L   + LTG  LS ++ L  GL T
Sbjct: 116 ILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVT 175

Query: 188 H 188
            
Sbjct: 176 E 176

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  110 bits (278), Expect = 6e-30
 Identities = 49/187 (26%), Positives = 67/187 (35%), Gaps = 10/187 (5%)

Query: 10  HVLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            VL E        +  NR   LNA    + A      +  E + G+  +V+ G GR FCA
Sbjct: 30  AVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCA 89

Query: 69  GGDV---VGAYRMLKEGRVEECKELFRTLYSFVYL-VATYSKPHVAIMDGITMGGGAGIA 124
           G  +     A    K     +   L   +       V    KP +A ++G  +G G   A
Sbjct: 90  GAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQA 149

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH---LGEYLGLTGATLSGEEML 181
           +    R A     FA      G   + G S+ L RL      L   L L+G T   EE  
Sbjct: 150 LMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALD--LLLSGRTFLAEEAA 207

Query: 182 FCGLATH 188
             GL   
Sbjct: 208 QLGLVKE 214

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  108 bits (273), Expect = 2e-29
 Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 7/182 (3%)

Query: 10  HVLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
           ++      N    V ++                   +     +     V++ G+G ++ A
Sbjct: 24  NLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMA 83

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
             D      +       E  + +      +  +     P ++ ++G  +       +   
Sbjct: 84  EIDFPS---LGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHSE-YILTTD 139

Query: 129 YRLATEKTVFA-MPEVLIGFHPDVGSSYYLSRLPGHL-GEYLGLTGATLSGEEMLFCGLA 186
             LA+E TVF  MP +  G  P  G         G   G Y   T   L+ ++     + 
Sbjct: 140 IILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVV 199

Query: 187 TH 188
             
Sbjct: 200 HE 201

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  109 bits (274), Expect = 2e-29
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 7/182 (3%)

Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS 65
           S  + +   +     T+ LNRP   NAL+ +M+A L + + +   +  V  VV+  +G++
Sbjct: 23  SEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKA 82

Query: 66  FCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
           FCAG D+     M  E   E  ++LF      +  +     P +A + GI    G  +  
Sbjct: 83  FCAGHDLKE---MRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVA 139

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFC 183
                +AT    FA+  + +G          LSR        E L +TG  +S ++    
Sbjct: 140 MCDLAVATRDARFAVSGINVGLFCSTPGV-ALSRNVGRKAAFEML-VTGEFVSADDAKGL 197

Query: 184 GL 185
           GL
Sbjct: 198 GL 199

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  108 bits (273), Expect = 2e-29
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 6/182 (3%)

Query: 10  HVLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            VLV+        V LNRP  +NA+   ++    +      +++ V  VVI G G+ FC+
Sbjct: 24  FVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCS 83

Query: 69  GGDV---VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
           G D         +    +          L   +  +    +P +A ++G  +GGG  +A+
Sbjct: 84  GADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLAL 143

Query: 126 HASYRLATEKTVFAMPEVLIGFHP-DVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFC 183
               R+A++   F    +  G    ++G SY L R  G      + LTG  +  +E    
Sbjct: 144 ACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERI 203

Query: 184 GL 185
           GL
Sbjct: 204 GL 205

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  107 bits (269), Expect = 6e-29
 Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 11/185 (5%)

Query: 5   QSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR 64
           Q     + + +     T+ L RP   NALN+ +V  LT+       +     +V+ G G 
Sbjct: 17  QGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRK-AGDGSARAIVLTGQGT 75

Query: 65  SFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIA 124
           +FCAG D+  +         +   EL + +            P V  ++G  +G G  +A
Sbjct: 76  AFCAGADL--SGDAFAADYPDRLIELHKAM-------DASPMPVVGAINGPAIGAGLQLA 126

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFC 183
           +    R+      F  P    G   D  S   LS L GH     + L+   L+ E  L  
Sbjct: 127 MQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHT 186

Query: 184 GLATH 188
           G+A  
Sbjct: 187 GMANR 191

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  106 bits (266), Expect = 2e-28
 Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 10/183 (5%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            + +        + LNRP   NA + +M+  L      +E ++ +   V+ G G  F AG
Sbjct: 10  TLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAG 69

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+     +  E +          +  +       SKP +  + G  +  G  +A+ A  
Sbjct: 70  LDLAS---VAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADI 126

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEMLFCGL 185
            +A E   FA  EV  G +P  G++    R P   G        LT  T    E    G+
Sbjct: 127 VIADETATFAQLEVNRGIYPFGGATI---RFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183

Query: 186 ATH 188
              
Sbjct: 184 VQE 186

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  104 bits (263), Expect = 4e-28
 Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAG 69
           V  E     R + L+ P+  N  + ++   +         +  V  VV+ G   RSF AG
Sbjct: 2   VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAG 61

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD      + +  R E+ +E    +      V   +KP +A +DG  +G G   A+    
Sbjct: 62  GDFNE---VKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQ 118

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEMLFCGL 185
           RL      F MPE+  G    VG+    + L    G      +     +L     +   L
Sbjct: 119 RLMASTANFVMPELKHGIGCSVGA----AILGFTHGFSTMQEIIYQCQSLDAPRCVDYRL 174

Query: 186 ATH 188
              
Sbjct: 175 VNQ 177

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  104 bits (261), Expect = 4e-28
 Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 9/181 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            V          + ++    +N L  +M   L +  ++ + +  V  +VI GN R F  G
Sbjct: 6   PVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGG 63

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+    ++L  G  +   ++ R  +   Y + +Y KP V    G  +  GA +     +
Sbjct: 64  FDL----KVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDH 119

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEEMLFCGLAT 187
           R+A         EV IG      +   L     P    +       T  GE  L  G   
Sbjct: 120 RVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAA-GLAKTFFGETALAAGFID 178

Query: 188 H 188
            
Sbjct: 179 E 179

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  104 bits (262), Expect = 8e-28
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 12/185 (6%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
             LVE+R ++  V +NRP   NAL+  M+ ++ + ++  +N+  +   ++ G G  FCAG
Sbjct: 21  DALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAG 80

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYL--VATYSKPHVAIMDGITMGGGAGIAVHA 127
            D+       K+   +  K+          L       KP +A ++G  + GG  I    
Sbjct: 81  MDLKA---ATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGT 137

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEMLFC 183
             R+A E   F + E     +P  GS+    RL   +       L LTG  ++  E    
Sbjct: 138 DIRVAAESAKFGISEAKWSLYPMGGSAV---RLVRQIPYTVACDLLLTGRHITAAEAKEM 194

Query: 184 GLATH 188
           GL  H
Sbjct: 195 GLVGH 199

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  103 bits (260), Expect = 1e-27
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 10/192 (5%)

Query: 1   MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           M    S    V  E+R +   + L+R    NA +++M+A L      +E +      V+ 
Sbjct: 4   MSEANSGPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLF 63

Query: 61  GNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGG 120
            +G  F AG D++    +  +      +     +  +  +    SKP V  + G     G
Sbjct: 64  AHGEHFTAGLDLME---LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAG 120

Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLS 176
             + ++A   +A   T FA  EVL G  P  GS+    R P   G        LTG    
Sbjct: 121 IELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTV---RFPRAAGWTDAMRYILTGDEFD 177

Query: 177 GEEMLFCGLATH 188
            +E L   L T 
Sbjct: 178 ADEALRMRLLTE 189

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  103 bits (258), Expect = 3e-27
 Identities = 51/184 (27%), Positives = 73/184 (39%), Gaps = 15/184 (8%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            V VE+     TVILNRPH  NA++    A L   +  ++ +      V+ G+  +FCAG
Sbjct: 12  AVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAG 71

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYL-VATYSKPHVAIMDGITMGGGAGIAVHAS 128
            D       LK    +   EL       +       SKP +A + G  + GG  +A+   
Sbjct: 72  AD-------LKAMGTDRGNELHPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCD 124

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEMLFCG 184
            R+  E  V  +     G     G +    RLP  +G      L LTG  +   E L  G
Sbjct: 125 LRVVEEDAVLGVFCRRWGVPLIDGGTI---RLPRLIGHSRAMDLILTGRPVHANEALDIG 181

Query: 185 LATH 188
           L   
Sbjct: 182 LVNR 185

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  103 bits (258), Expect = 3e-27
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 7/186 (3%)

Query: 2   GLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG 61
           G ++S        +    R ++L+ P   N L+ +M+  L        +++ +  ++I  
Sbjct: 26  GRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISA 85

Query: 62  NGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGA 121
            G  F +G D+     + +E   +   E+F+T    +  +  +  P +A+++G+    G 
Sbjct: 86  EGPVFSSGHDLKE---LTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGC 142

Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL--PGHLGEYLGLTGATLSGEE 179
            +       +A++K+ FA P V +G          L+R        E L  TG  +S +E
Sbjct: 143 QLVASCDIAVASDKSSFATPGVNVGLFCSTPGV-ALARAVPRKVALEML-FTGEPISAQE 200

Query: 180 MLFCGL 185
            L  GL
Sbjct: 201 ALLHGL 206

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  102 bits (256), Expect = 4e-27
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 9/181 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +   +      + L RP VLNAL+  MVA +    E+++ N  V  +V+ G GR+F AG
Sbjct: 6   SIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAG 65

Query: 70  GDVVG-AYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
            D+   A               +         ++    P +A ++G+ +GGG  +A+   
Sbjct: 66  ADIQEMAKDDPIRLEWLNQFADWDR-------LSIVKTPMIAAVNGLALGGGFELALSCD 118

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLAT 187
             +A+    F  PEV +G  P  G +  L++L G         TGA +S +E    G+  
Sbjct: 119 LIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVN 178

Query: 188 H 188
            
Sbjct: 179 R 179

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  102 bits (256), Expect = 6e-27
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +LVE       + +NRPH  NAL+T+MV+     ++  +++ G+   ++ G G ++C G
Sbjct: 10  ELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVG 69

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
           GD +    M+++G               +    T +KP +A ++G  +GGG  +      
Sbjct: 70  GD-LSDGWMVRDGSAPPLDPATIGKGLLL--SHTLTKPLIAAVNGACLGGGCEMLQQTDI 126

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEMLFCGL 185
           R++ E   F +PEV  G  P  GS     RL   +       + LTG  L+  E    GL
Sbjct: 127 RVSDEHATFGLPEVQRGLVPGAGSMV---RLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183

Query: 186 ATH 188
             H
Sbjct: 184 VGH 186

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  102 bits (256), Expect = 6e-27
 Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 16/192 (8%)

Query: 10  HVLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            + V         V LNRP   NA+N +    L + ++    +S    VV+ G G+ F +
Sbjct: 4   SIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTS 63

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYL-------VATYSKPHVAIMDGITMGGGA 121
           G D++     + +   ++   +   L   +         +    KP +A + G  +GGG 
Sbjct: 64  GIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGV 123

Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY-----LGLTGATLS 176
            +      R  T+   F + EV +G   DVG+   L RLP  +G       L  T   + 
Sbjct: 124 DLISACDIRYCTQDAFFQVKEVDVGLAADVGT---LQRLPKVIGNRSLVNELTFTARKMM 180

Query: 177 GEEMLFCGLATH 188
            +E L  GL + 
Sbjct: 181 ADEALDSGLVSR 192

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  100 bits (252), Expect = 2e-26
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 17/183 (9%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VL+E+R     + +NRP   NA+N ++   L    +  ++++ +   +I G G +FCAG
Sbjct: 8   EVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAG 67

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D       LK     E     R      +      KP +A ++G  + GG  + +    
Sbjct: 68  MD-------LKAFVSGEAVLSER---GLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDL 117

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEMLFCGL 185
            +A     F +PEV  G     G      RLP  +       L LTG + + E+    G 
Sbjct: 118 VVAGRSAKFGIPEVKRGLVAGAGGLL---RLPNRIPYQVAMELALTGESFTAEDAAKYGF 174

Query: 186 ATH 188
              
Sbjct: 175 INR 177

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  100 bits (252), Expect = 2e-26
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 16/183 (8%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            VLVE+R     + +NRP   N++N ++   L    +  + ++G+   ++ G G SFCAG
Sbjct: 16  EVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAG 75

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D       LK     E   +        +     +KP +A ++G  + GG  +A+    
Sbjct: 76  MD-------LKAFARGENVVVEGR--GLGFTERPPAKPLIAAVEGYALAGGTELALATDL 126

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEMLFCGL 185
            +A   + F +PEV  G     G      RLP  +       L LTG  LS E     G+
Sbjct: 127 IVAARDSAFGIPEVKRGLVAGGGGLL---RLPERIPYAIAMELALTGDNLSAERAHALGM 183

Query: 186 ATH 188
              
Sbjct: 184 VNV 186

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  101 bits (253), Expect = 2e-26
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 7/180 (3%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +LVE       + LNRP  LNALN+ ++  +T      +++  +  ++I G+ ++F AG
Sbjct: 26  TILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAG 85

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+     M      +     F   +     +A    P +A + G  +GGG  +A+    
Sbjct: 86  ADIKE---MADLTFADAFTADFFATWGK---LAAVRTPTIAAVAGYALGGGCELAMMCDV 139

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
            +A +   F  PE+ +G  P +G S  L+R  G      L LTG T+   E    GL + 
Sbjct: 140 LIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSR 199

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  100 bits (252), Expect = 2e-26
 Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 13/188 (6%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +  E   ++ T+ LNRP  LNAL+  M+  L   Y   EN+  V  +V+ G GR+FC+G
Sbjct: 12  TIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSG 71

Query: 70  GDV---VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
            DV       +++ E       + +           T +KP +  ++GI  G G      
Sbjct: 72  ADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTT 131

Query: 127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGA--TLSGEEM 180
               +A+E+  F  P V IG            R+   L       + L G    +S +  
Sbjct: 132 TDIVIASEQATFFDPHVSIGLVAGREL----VRVSRVLPRSIALRMALMGKHERMSAQRA 187

Query: 181 LFCGLATH 188
              GL + 
Sbjct: 188 YELGLISE 195

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  102 bits (255), Expect = 2e-26
 Identities = 39/209 (18%), Positives = 64/209 (30%), Gaps = 36/209 (17%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +  E       +  NRP   NA+       L+   E  + +  V  +++ G G  FCAG
Sbjct: 36  TMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAG 95

Query: 70  GDVVG--------------------------AYRMLKEGRVEECKELFRTLYSFVYLVAT 103
            D+                             +   +        ++          +  
Sbjct: 96  FDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMH 155

Query: 104 YSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH 163
             KP V  + G  + GG  IA+HA   +A        P + +   P  G           
Sbjct: 156 CDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG------LWAHR 209

Query: 164 LGE----YLGLTGATLSGEEMLFCGLATH 188
           LG+     L  TG  ++G +    GLA  
Sbjct: 210 LGDQRAKRLLFTGDCITGAQAAEWGLAVE 238

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  101 bits (252), Expect = 5e-26
 Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 18/194 (9%)

Query: 10  HVLVEERANSR--TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRS-- 65
            +      +     V  NRP V NA     V  L +  +    +  V  V++ GNG S  
Sbjct: 56  DITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPK 115

Query: 66  -----FCAGGDV-------VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD 113
                FC+GGD                   V+  +     +     L+    K  + +++
Sbjct: 116 DGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVN 175

Query: 114 GITMGGGAGIAVHASYRLA-TEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLT 171
           G   GGG  + V     LA  E   F   +  +G       S YL+R  G      +   
Sbjct: 176 GWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFL 235

Query: 172 GATLSGEEMLFCGL 185
           G T + E+M   G 
Sbjct: 236 GRTYTAEQMHQMGA 249

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 98.4 bits (246), Expect = 2e-25
 Identities = 51/180 (28%), Positives = 74/180 (41%), Gaps = 7/180 (3%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            ++V+      T+ LNRP   NALN  ++A L        +      VVI G G  F AG
Sbjct: 17  TLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDIPDQIRA--VVIHGIGDHFSAG 74

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+      L+E    E     +T +     +     P +A + G  +GGG  +A  A  
Sbjct: 75  LDL----SELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHI 130

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
           R+A     +A+PE   G     G S  L RL G      + LTG   S  E +  G + +
Sbjct: 131 RVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQY 190

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 97.6 bits (244), Expect = 3e-25
 Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 12/193 (6%)

Query: 1   MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           M  +   ++  L EE      + +NR +  N+L+ +++ +L+K  ++ +++  V  ++I+
Sbjct: 4   MKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIR 63

Query: 61  GNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
                 FCAG D+    +   +    E       + + +  +A    P +A +DG+ +GG
Sbjct: 64  SEVPGIFCAGADL----KERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGG 119

Query: 120 GAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATL 175
           G  +A+    R+A       + E  +   P  G +  L R    +G      L  +   L
Sbjct: 120 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRA---IGMSLAKELIFSARVL 176

Query: 176 SGEEMLFCGLATH 188
            G+E    GL +H
Sbjct: 177 DGKEAKAVGLISH 189

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 97.2 bits (243), Expect = 4e-25
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 7/182 (3%)

Query: 10  HVLVEERANSRTVI-LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFC 67
           ++ V+        I LNR    N+L+ +++  L          +    V++ G G ++FC
Sbjct: 9   NISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFC 68

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
           AG D+    +       E+ +     + + + +V    +P +A ++GI +GGG  +++  
Sbjct: 69  AGADL----KERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLAC 124

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLA 186
            +R+A E     + E  +   P  G +  L RL G    + L  TG  +S +E    GL 
Sbjct: 125 DFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLV 184

Query: 187 TH 188
             
Sbjct: 185 EF 186

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 96.8 bits (242), Expect = 6e-25
 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 12/184 (6%)

Query: 10  HVLVEERANSR---TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           +++ E++  +     + LNRP  LNAL   ++  L +  E++E +  V  +V+ G  ++F
Sbjct: 5   YIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAF 64

Query: 67  CAGGDVVG-AYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAV 125
            AG D+     R  ++    +    +  +           KP +A ++G  +GGG  +A+
Sbjct: 65  AAGADIKEMQNRTFQDCYSGKFLSHWDHI-------TRIKKPVIAAVNGYALGGGCELAM 117

Query: 126 HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCG 184
                 A EK  F  PE+L+G  P  G +  L+R  G  L   + LTG  +S ++    G
Sbjct: 118 MCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177

Query: 185 LATH 188
           L + 
Sbjct: 178 LVSK 181

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 96.8 bits (242), Expect = 6e-25
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 13/188 (6%)

Query: 6   SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-R 64
           +     L E R N   + +NRP   NA+N ++   +    E  +++  V  VV+ G G +
Sbjct: 6   TDAPGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDK 65

Query: 65  SFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIA 124
           SFCAG D+    + +         +         Y+     KP +A ++G  +GGG  +A
Sbjct: 66  SFCAGADL----KAIARRENLYHPD-HPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELA 120

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEM 180
           + +   +A E+  F +PEV  G     G  +   R+   L       L LTG  LS    
Sbjct: 121 LASDLVVADERAQFGLPEVKRGLIAAAGGVF---RIAEQLPRKVAMRLLLTGEPLSAAAA 177

Query: 181 LFCGLATH 188
              GL   
Sbjct: 178 RDWGLINE 185

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 96.4 bits (241), Expect = 7e-25
 Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 10  HVLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            +           + L+RP  LNALN ++ A +      ++ +  +  +V+ G+ R+F A
Sbjct: 10  TIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAA 69

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           G D+      +      + +E    L  +   +    KP VA + G  +GGG  +A+   
Sbjct: 70  GADI----AEMVTLTPHQARE-RNLLSGW-DSLTQVRKPIVAAVAGYALGGGCELAMLCD 123

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLAT 187
             +A +   F  PE+ +G  P +G +  L+R  G      L LTG +L+ EE    GL +
Sbjct: 124 LVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVS 183

Query: 188 H 188
            
Sbjct: 184 R 184

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 95.8 bits (239), Expect = 2e-24
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 18/188 (9%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           ++  +      T+ LNRP   NA N  ++  L   +     ++ V  +V++ NG+ F AG
Sbjct: 21  YIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAG 80

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYL-----VATYSKPHVAIMDGITMGGGAGIA 124
            D+    R       +   E      S  YL          KP +A + G  + GG  + 
Sbjct: 81  HDL----RGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLC 136

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEM 180
                 +A E  +F+ P VL+     V            LG      +  TG  ++ EE+
Sbjct: 137 WPCDLIIAAEDALFSDPVVLMDI-GGVEY----HGHTWELGPRKAKEILFTGRAMTAEEV 191

Query: 181 LFCGLATH 188
              G+   
Sbjct: 192 AQTGMVNR 199

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 95.3 bits (238), Expect = 2e-24
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 5/180 (2%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            + V    +     LN     NA+++ ++  +T+  +  E +  +  VVI G GR F AG
Sbjct: 7   FLSVRVEDHIAVATLNHAP-ANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAG 65

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+            ++  EL +        V   SKP +A + G  +GGG   A+    
Sbjct: 66  ADIK---EFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHM 122

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
           R ATE     +PE+ +G  P    +  L R  G      + LT   ++G E L  GL   
Sbjct: 123 RFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNG 182

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 92.3 bits (230), Expect = 1e-23
 Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 14/179 (7%)

Query: 11  VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           V         T+ LN    +NA++  ++       +  E +  +  V++ G       G 
Sbjct: 8   VSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDRAI--VIVTGQPGILSGGY 64

Query: 71  DVVGAYRMLKE--GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           D       LK      E    L     +    + ++  P +    G  +  GA + + A 
Sbjct: 65  D-------LKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSAD 117

Query: 129 YRLATEKT-VFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGL 185
           YR+         + EV IG                        +       E  +  G 
Sbjct: 118 YRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGF 176

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 7/182 (3%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCA 68
            +  E       V +NRP V NA     VA +   +    ++  V  +V+ G G  +FC+
Sbjct: 14  EIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCS 73

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVY-LVATYSKPHVAIMDGITMGGGAGIAVHA 127
           GGD     +    G      ++ R     +  L+    KP +A++ G  +GGG  + V  
Sbjct: 74  GGDQ----KKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVC 129

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCGLA 186
              +A +  +F      +G       S YL+R+ GH     +       + +E L  GL 
Sbjct: 130 DLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLV 189

Query: 187 TH 188
             
Sbjct: 190 NT 191

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 10/183 (5%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG------ 63
            +L  +      +++NRPH  NA     V  L   + +   ++ +  V++ G G      
Sbjct: 11  DILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGK 70

Query: 64  RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGI 123
            +FC+GGD        + G +++       +     L+ +  K  +A++ G  +GGG  +
Sbjct: 71  YAFCSGGDQSV---RGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVL 127

Query: 124 AVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLF 182
            +     +A +  +F      +G       S YL+R+ G      +       S +E   
Sbjct: 128 HLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAER 187

Query: 183 CGL 185
            G+
Sbjct: 188 MGM 190

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 92.6 bits (231), Expect = 2e-23
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 6/180 (3%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            V V       T++++RP   NA+   +   +    +       +  VV+ G    F AG
Sbjct: 25  FVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAG 83

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+      L+     E     R     +  VA   KP VA + G  +G G  +A+ A +
Sbjct: 84  DDM----PELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADW 139

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH 188
           R++ +   F   E+L G  P  G    L+R+ G    + L  +G     EE L  GL   
Sbjct: 140 RVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDD 199

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 15/187 (8%)

Query: 10  HVLVEERANSRTVI-LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFC 67
            +  E+  +    I +NRP V NA     V  + +       +  +  +++ G G ++FC
Sbjct: 28  DIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFC 87

Query: 68  AGGDV-----VGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAG 122
           +GGD       G Y+           +  R        + T  KP VA++ G ++GGG  
Sbjct: 88  SGGDQKVRGDYGGYKDDSGVHHLNVLDFQR-------QIRTCPKPVVAMVAGYSIGGGHV 140

Query: 123 IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEML 181
           + +     +A +  +F      +G       + Y++R+ G      +         ++ L
Sbjct: 141 LHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQAL 200

Query: 182 FCGLATH 188
             GL   
Sbjct: 201 DMGLVNT 207

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 94.1 bits (234), Expect = 5e-23
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 29/204 (14%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN------- 62
            V +E R     + + R   LNA +   V  +    +    + GV   +++G        
Sbjct: 168 AVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRY 227

Query: 63  --GRSFCAGGDV-------VGAYRMLKEGRVEECKELFRTLYSFVYL-----VATYSKPH 108
              R F AG ++       +     L    +    +L R + +              KP 
Sbjct: 228 RGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPW 287

Query: 109 VAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY- 167
           VA +DG  +GGGA + +     LA+    F++P    G  P   +     RL    G   
Sbjct: 288 VAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAAN----LRLGRFAGPRV 343

Query: 168 ---LGLTGATLSGEEMLFCGLATH 188
              + L G  +  +E     L   
Sbjct: 344 SRQVILEGRRIWAKEPEARLLVDE 367

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 89.1 bits (222), Expect = 5e-22
 Identities = 34/182 (18%), Positives = 73/182 (40%), Gaps = 9/182 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG--RSFC 67
           +V V        +  N    LNAL+   +  L +          +  ++++     + F 
Sbjct: 5   YVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFS 63

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
           AG D+      L  G  +        L     ++  + KP +++++G   GG   + + +
Sbjct: 64  AGHDI----HELPSGGRDPL-SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSS 118

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLA 186
              +A   + F+M  V +G   ++   + L+R  G H+ + L  T + ++ +  L  G+ 
Sbjct: 119 DLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGIL 178

Query: 187 TH 188
            H
Sbjct: 179 NH 180

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 90.4 bits (225), Expect = 1e-21
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 18/190 (9%)

Query: 5   QSSQIHVLVEERANSRTVI-LNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG 63
             ++   ++E   +   VI L  P V N+L+  ++  L   YE   + + V  +VI G  
Sbjct: 3   SRTKGKTVMEVGGDGVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAK 61

Query: 64  RSFCAGGDVVGAYRML---KEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGG 120
             F  G D+          ++G V+E K  + ++     L+    KP VA +DG+ +GGG
Sbjct: 62  GRFSGGFDI----SGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGG 117

Query: 121 AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG-----EYLGLTGATL 175
             +A+    R++       +PE+ +G  P  G +    RLP  +G     E + LT   +
Sbjct: 118 LELAMACHARISAPAAQLGLPELQLGVIPGFGGTQ---RLPRLVGLTKALEMI-LTSKPV 173

Query: 176 SGEEMLFCGL 185
             EE    GL
Sbjct: 174 KAEEGHSLGL 183

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 88.6 bits (220), Expect = 2e-21
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 13/195 (6%)

Query: 7   SQIHVLVEERANSRTVILNRPHVLN----ALNTSMV-----ALLTKQYESWENNSGVDFV 57
           S + ++ E + +   + ++    +N      +T +V                       V
Sbjct: 30  STLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHV 89

Query: 58  VIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL---VATYSKPHVAIMDG 114
           V+  +   F  GGD+    ++++EG      +  +     V+            +A++ G
Sbjct: 90  VLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQG 149

Query: 115 ITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGA 173
             +GGG   A+     +A E  +  +PEVL    P +G+  ++ +    HL + + L G 
Sbjct: 150 NALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGN 209

Query: 174 TLSGEEMLFCGLATH 188
             S E++L  GL   
Sbjct: 210 LYSAEQLLGMGLVDR 224

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 86.0 bits (214), Expect = 6e-21
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 9/184 (4%)

Query: 9   IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFC 67
           + V  +  A    +    P  +N+L+   +  L    E  EN+     V++  +    F 
Sbjct: 5   VLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
           AG D+      +           ++ +      +   +   V+ ++G    GG  +A+  
Sbjct: 64  AGLDL----TEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTC 119

Query: 128 SYRLATEKTVFAM--PEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCG 184
            YR+  +   + +   E  +G          L    GH   E     G      E L  G
Sbjct: 120 DYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVG 179

Query: 185 LATH 188
           +   
Sbjct: 180 IVDQ 183

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 86.5 bits (215), Expect = 6e-21
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 11/195 (5%)

Query: 1   MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           M L+  +   + V        +IL+ P  +N +  +M+  L     +  ++S V  +V  
Sbjct: 1   MSLRNDAYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFS 59

Query: 61  GNG-RSFCAGGDVVGAYRM-LKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMG 118
                 F A  D+    +M   +              +   L+    +  +  + G   G
Sbjct: 60  SADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARG 119

Query: 119 GGAGIAVHASYRLA-TEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGA 173
           GGA     A    A  E       E L+G  P  G + YL      +G      + LT  
Sbjct: 120 GGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR---VGRNRALEVVLTAD 176

Query: 174 TLSGEEMLFCGLATH 188
               E     G    
Sbjct: 177 LFDAETAASYGWINR 191

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 87.3 bits (217), Expect = 2e-20
 Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 22/189 (11%)

Query: 3   LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN 62
           + + S +   +    +   + L  P V NA++ +++  +    +   ++  V  +VI G 
Sbjct: 15  VPRGSHMAEYLRLPHSLAMIRLCNPPV-NAVSPTVIREVRNGLQKAGSDHTVKAIVICGA 73

Query: 63  GRSFCAGGDVVGAYRML-KEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGA 121
             +FCAG D+                  L   +         Y KP +A + G+ +GGG 
Sbjct: 74  NGNFCAGADI----HGFSAFTPGLALGSLVDEI-------QRYQKPVLAAIQGVALGGGL 122

Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG-----EYLGLTGATLS 176
            +A+   YR+A  K    +PEV +G  P    +     LP  +G     + +  +G  LS
Sbjct: 123 ELALGCHYRIANAKARVGLPEVTLGILPGARGTQ---LLPRVVGVPVALDLI-TSGKYLS 178

Query: 177 GEEMLFCGL 185
            +E L  G+
Sbjct: 179 ADEALRLGI 187

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 84.9 bits (211), Expect = 2e-20
 Identities = 35/194 (18%), Positives = 77/194 (39%), Gaps = 14/194 (7%)

Query: 1   MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIK 60
           M   ++ + ++ V +      + L+     N+ +           +    +  +  V++ 
Sbjct: 1   MTAVETKKQYLTVFKEDGIAEIHLHINK-SNSYDLEFYKEFNAAIDDIRFDPDIKVVIVM 59

Query: 61  GNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
            +  + F AG D+      L+        +        +  +A   + ++A ++G T+GG
Sbjct: 60  SDVPKFFSAGADI----NFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGG 115

Query: 120 GAGIAVHASYRLATEKTV-FAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGAT 174
           G  +A+    R   ++     +PEV +G     G +  L+RL   +G      + +TG T
Sbjct: 116 GLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL---IGYSRALDMNITGET 172

Query: 175 LSGEEMLFCGLATH 188
           ++ +E L  GL   
Sbjct: 173 ITPQEALEIGLVNR 186

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 84.6 bits (210), Expect = 4e-20
 Identities = 36/188 (19%), Positives = 58/188 (30%), Gaps = 17/188 (9%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCA 68
            +         +   N P  +N +   +V  L    E   + +    V+        F  
Sbjct: 9   TIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFP 67

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYL---VATYSKPHVAIMDGITMGGGAGIAV 125
             D+      + E   E  K       S   L   ++      +A + G   G G+   +
Sbjct: 68  HVDM----TKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLL 123

Query: 126 HASYRLA-TEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEY----LGLTGATLSGEEM 180
               R A  E  +   PEV IG  P  G+  +L+RL   LG        LT +    +  
Sbjct: 124 ACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL---LGRGRALEAVLTSSDFDADLA 180

Query: 181 LFCGLATH 188
              G    
Sbjct: 181 ERYGWVNR 188

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 82.3 bits (204), Expect = 1e-18
 Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 12/183 (6%)

Query: 10  HVLVEERANSRTVI-LNRPHV-LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFC 67
            + V    +    +  +     +N  N   +  L +  ++ + ++ V  V++      F 
Sbjct: 7   AITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFI 66

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVA---TYSKPHVAIMDGITMGGGAGIA 124
            G D+        E       EL         + +     + P VA ++GI +GGG  + 
Sbjct: 67  VGADI----TEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMC 122

Query: 125 VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG--EYLGLTGATLSGEEMLF 182
           + A +R+  +     +PEV +G +P  G +  L RL G     E++  +G     E+ L 
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWI-ASGKENRAEDALK 181

Query: 183 CGL 185
              
Sbjct: 182 VSA 184

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 78.9 bits (194), Expect = 1e-17
 Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 20/198 (10%)

Query: 10  HVLVEERANSRTVILNRP----------HVLNALNTSMVALLTKQYESWE-NNSGVDFVV 58
           H  +       T+ ++              LN+ +  +   L    +     +  V  VV
Sbjct: 22  HWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVV 81

Query: 59  IKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITM 117
           +     R FC+G ++          +V  CK    T               +A ++G   
Sbjct: 82  LTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACA 141

Query: 118 GGGAGIAV--HASYRLATEKTVFAMPEV-LIGFHPDVGSSYYLSRL----PGHLGEYLGL 170
           GGG  +A+     Y +    +  ++PEV L+G  P  G    ++            +   
Sbjct: 142 GGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFC-T 200

Query: 171 TGATLSGEEMLFCGLATH 188
               + GE      L   
Sbjct: 201 VVEGVRGERAKAWRLVDE 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.9
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.87
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.86
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.74
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.65
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.63
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.61
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.29
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	99.04
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	99.04
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	99.03
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.9
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.9
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.57
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.55
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	98.46
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.43
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	98.21
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	98.2
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	98.13
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	98.04
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.96
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.95
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.88
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.78
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.68
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	97.26
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.19
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.16
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.07
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	96.9
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.79
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.75
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.02
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	95.8
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	95.72
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	94.84
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	90.48
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	90.29

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=8.5e-53  Score=338.30  Aligned_cols=192  Identities=26%  Similarity=0.360  Sum_probs=167.1

Q ss_pred             CCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc
Q 041986            4 KQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         4 ~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~   83 (195)
                      +.+.++.|.++.+++|++||||||++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++........
T Consensus        10 ~GsM~e~il~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~   89 (274)
T 4fzw_C           10 HGSMMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPA   89 (274)
T ss_dssp             ------CEEEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------C
T ss_pred             cccccccEEEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccc
Confidence            44567789999999999999999999999999999999999999999999999999999999999999998764443333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      .+....+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| 
T Consensus        90 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  169 (274)
T 4fzw_C           90 PDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGR  169 (274)
T ss_dssp             CCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhH
Confidence            3333455556778889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|||++++
T Consensus       170 ~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l  202 (274)
T 4fzw_C          170 ARAMGLALLGNQLSAEQAHEWGMIWQVVDDETL  202 (274)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGH
T ss_pred             HHHHHHHHhCCcCCHHHHHHCCCceEEeChHHH
Confidence            899999999999999999999999999998764

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=3.6e-52  Score=331.56  Aligned_cols=180  Identities=29%  Similarity=0.408  Sum_probs=167.4

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      |.+|++|+|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|+.||+|.|++++......     ....
T Consensus         2 vl~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-----~~~~   76 (254)
T 3hrx_A            2 VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPD-----YEAH   76 (254)
T ss_dssp             EEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCC-----HHHH
T ss_pred             eEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchh-----hHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999987543221     1344


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG  169 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~  169 (195)
                      .+..+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++.+++
T Consensus        77 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll  156 (254)
T 3hrx_A           77 LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL  156 (254)
T ss_dssp             THHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence            556778889999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++|++++|+||+++||||+|||++++
T Consensus       157 ltg~~i~A~eA~~~GLv~~vv~~~~l  182 (254)
T 3hrx_A          157 LLSPRLSAEEALALGLVHRVVPAEKL  182 (254)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECGGGH
T ss_pred             hcCcccCHHHHHHCCCeEEecCcHHH
Confidence            99999999999999999999998763

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=5.9e-52  Score=330.83  Aligned_cols=184  Identities=26%  Similarity=0.404  Sum_probs=167.4

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      .+++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.....     
T Consensus         2 ~~ms~l~ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-----   76 (258)
T 4fzw_A            2 RSMSELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDL-----   76 (258)
T ss_dssp             ---CEEEEEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCH-----
T ss_pred             CCCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchh-----
Confidence            356679999999999999999999999999999999999999999999999999999999999999998754221     


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                       ..........++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .+
T Consensus        77 -~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  155 (258)
T 4fzw_A           77 -AATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSL  155 (258)
T ss_dssp             -HHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             -hhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHH
Confidence             1122334556788899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||+|||++++
T Consensus       156 A~~llltg~~i~a~eA~~~GLv~~vv~~~~l  186 (258)
T 4fzw_A          156 ASKMVLSGESITAQQAQQAGLVSDVFPSDLT  186 (258)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTH
T ss_pred             HHHHHHcCCcCcHHHHHHCCCeeEEeCchHH
Confidence            9999999999999999999999999999864

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=2e-50  Score=325.45  Aligned_cols=190  Identities=28%  Similarity=0.371  Sum_probs=175.8

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ..++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++..........
T Consensus        14 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   93 (279)
T 3g64_A           14 PEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTA   93 (279)
T ss_dssp             SCCSSEEEEEETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhh
Confidence            35678999999999999999999999999999999999999999999999999999999999999999987655444333


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCccccccc-CCCchhhHhhhcch-H
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFH-PDVGSSYYLSRLPG-H  163 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~-p~~g~~~~l~r~~g-~  163 (195)
                      ....+.+...+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++|++++|+|++| .
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~  173 (279)
T 3g64_A           94 RLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG  173 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence            444556667789999999999999999999999999999999999999999999999999999 99999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+|||++++
T Consensus       174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  205 (279)
T 3g64_A          174 HATRLLMLGDTVRAPEAERIGLISELTEEGRA  205 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCH
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCCCEecCchHH
Confidence            99999999999999999999999999998864

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=2.9e-50  Score=333.55  Aligned_cols=191  Identities=41%  Similarity=0.712  Sum_probs=174.0

Q ss_pred             CCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcc
Q 041986            4 KQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEG   82 (195)
Q Consensus         4 ~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~   82 (195)
                      ...+++.|.++++|+|++||||||++.|++|.+|+.+|.++|+.++.|+++|+|||||.| +.||+|.|++++.......
T Consensus         4 ~t~~~e~vl~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~   83 (353)
T 4hdt_A            4 VTAKNEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKAD   83 (353)
T ss_dssp             ----CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTT
T ss_pred             ccCCCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchh
Confidence            345678899999999999999999999999999999999999999999999999999999 7999999999987554332


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986           83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG  162 (195)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g  162 (195)
                       ......+.....+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|
T Consensus        84 -~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g  162 (353)
T 4hdt_A           84 -GAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG  162 (353)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST
T ss_pred             -hHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh
Confidence             2344566677778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|||+++|
T Consensus       163 ~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l  195 (353)
T 4hdt_A          163 KLGLHAALTGAPFSGADAIVMGFADHYVPHDKI  195 (353)
T ss_dssp             THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGH
T ss_pred             HHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHH
Confidence            889999999999999999999999999998864

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=2.2e-50  Score=322.97  Aligned_cols=188  Identities=22%  Similarity=0.397  Sum_probs=171.9

Q ss_pred             CCCCcceEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhc
Q 041986            4 KQSSQIHVLVE-ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKE   81 (195)
Q Consensus         4 ~~~~~~~v~~~-~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~   81 (195)
                      .+++++.|.++ ++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.| +.||+|.|++++...   
T Consensus         3 ~mm~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~---   79 (265)
T 3kqf_A            3 AMLQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM---   79 (265)
T ss_dssp             ----CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC---
T ss_pred             ccccCCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc---
Confidence            44567889999 8999999999999999999999999999999999999999999999999 999999999987643   


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcc
Q 041986           82 GRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP  161 (195)
Q Consensus        82 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~  161 (195)
                       .......+.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus        80 -~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  158 (265)
T 3kqf_A           80 -NEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLI  158 (265)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHh
Confidence             2233445666778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      | .++.+++++|++++|+||+++||||+|||++++
T Consensus       159 G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  193 (265)
T 3kqf_A          159 GVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLL  193 (265)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGH
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHH
Confidence            9 999999999999999999999999999998763

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=5.2e-50  Score=321.16  Aligned_cols=187  Identities=26%  Similarity=0.375  Sum_probs=169.9

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      +++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++...... ....
T Consensus         2 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~   80 (268)
T 3i47_A            2 SLSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANF-TEEE   80 (268)
T ss_dssp             CCCSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTC-CHHH
T ss_pred             CCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccc-cHHH
Confidence            356799999999999999999999999999999999999999999999999999999999999999998754322 2222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      .......+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +++|++| .++
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A  159 (268)
T 3i47_A           81 NLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAA  159 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHH
Confidence            23445567788899999999999999999999999999999999999999999999999999999877 7899999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+|||++++
T Consensus       160 ~~llltg~~i~A~eA~~~GLV~~vv~~~~l  189 (268)
T 3i47_A          160 KMLFMSAEVFDATRAYSLNLVQHCVPDDTL  189 (268)
T ss_dssp             HHHHHHCCEEEHHHHHHTTSCSEEECGGGH
T ss_pred             HHHHHcCCccCHHHHHHcCCCcEeeChhHH
Confidence            999999999999999999999999998763

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=2.2e-50  Score=322.63  Aligned_cols=188  Identities=22%  Similarity=0.332  Sum_probs=171.4

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCce-eccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF-CAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F-~~G~dl~~~~~~~~~~~~~   85 (195)
                      +++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.| |+|.|++++..........
T Consensus         2 s~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~   81 (263)
T 3lke_A            2 SLSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDV   81 (263)
T ss_dssp             -CCSEEEEECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSH
T ss_pred             CCcEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHH
Confidence            456799999999999999999999999999999999999999999999999999999998 9999999987621112223


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ....+.+...+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~  161 (263)
T 3lke_A           82 RLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQ  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHH
Confidence            34556677788999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccC-CCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSL-SAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~-~~~  194 (195)
                      +.+++++|++++|+||+++||||+||| +++
T Consensus       162 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~  192 (263)
T 3lke_A          162 TMNLLLEGKLFTSEEALRLGLIQEICENKQE  192 (263)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEESSHHH
T ss_pred             HHHHHHhCCCcCHHHHHHcCCCcEecCChhH
Confidence            999999999999999999999999999 553

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=9.2e-50  Score=318.74  Aligned_cols=185  Identities=25%  Similarity=0.359  Sum_probs=169.1

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.|.++++++|++||||||++ |++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.....   ...
T Consensus         4 m~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~   79 (261)
T 3pea_A            4 MLKFLSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTE---AKQ   79 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCC---HHH
T ss_pred             cccceEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCc---hhH
Confidence            35689999999999999999998 99999999999999999999999999999999999999999998764321   122


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a  159 (261)
T 3pea_A           80 ATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKA  159 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence            2344455567888999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+|+|++++
T Consensus       160 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  189 (261)
T 3pea_A          160 CEMMLTSTPITGAEALKWGLVNGVFAEETF  189 (261)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEECGGGH
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEecCHHHH
Confidence            999999999999999999999999998763

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=1.9e-49  Score=318.92  Aligned_cols=183  Identities=24%  Similarity=0.339  Sum_probs=170.1

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      ++.|.++++++|++|+||||++ |++|.+++.+|.++|+.++.|+++|+|||||.|+.||+|.|++++....    ....
T Consensus        23 ~~~v~~~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~----~~~~   97 (277)
T 4di1_A           23 NEFVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLN----APEA   97 (277)
T ss_dssp             CCSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCC----HHHH
T ss_pred             CceEEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccC----hHHH
Confidence            3579999999999999999998 9999999999999999999999999999999999999999999986532    2334


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                      ..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++.
T Consensus        98 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (277)
T 4di1_A           98 DTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAK  177 (277)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHH
Confidence            456667778899999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++||||+|+|++++
T Consensus       178 ~llltG~~i~A~eA~~~GLV~~vv~~~~l  206 (277)
T 4di1_A          178 ELVFSGRFFDAEEALALGLIDDMVAPDDV  206 (277)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGH
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEeChhHH
Confidence            99999999999999999999999998763

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=7.9e-50  Score=320.98  Aligned_cols=184  Identities=27%  Similarity=0.301  Sum_probs=169.2

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ++++.|.++++++|++||||||++.|++|.+++.+|.++++.+  |+++|+|||||.|+.||+|.|++++...    ...
T Consensus        13 m~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~   86 (275)
T 3hin_A           13 ADPSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRER----DAT   86 (275)
T ss_dssp             CCGGGEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCC----CHH
T ss_pred             CCCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhcc----Chh
Confidence            4567899999999999999999999999999999999999999  5799999999999999999999987542    222


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ......+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  166 (275)
T 3hin_A           87 EGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVAR  166 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHH
Confidence            23345566778889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||+|||++++
T Consensus       167 A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l  197 (275)
T 3hin_A          167 MADMMLTGRVYSAAEGVVHGFSQYLIENGSA  197 (275)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEESSSCH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCCEEeChhHH
Confidence            9999999999999999999999999998864

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=3.4e-50  Score=320.49  Aligned_cols=186  Identities=24%  Similarity=0.380  Sum_probs=165.3

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ++..|.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.........  
T Consensus         4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--   81 (256)
T 3qmj_A            4 SMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNF--   81 (256)
T ss_dssp             --CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSC--
T ss_pred             CcceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhH--
Confidence            467899999999999999999999999999999999999999999999999999999999999999998754332210  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                       ......+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++
T Consensus        82 -~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  160 (256)
T 3qmj_A           82 -SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNA  160 (256)
T ss_dssp             -CCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHH
Confidence             112234567888999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+|+|++++
T Consensus       161 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  190 (256)
T 3qmj_A          161 AWLLMSSEWIDAEEALRMGLVWRICSPEEL  190 (256)
T ss_dssp             HHHHHSCCCEEHHHHHHHTSSSEEECGGGH
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEEeCHhHH
Confidence            999999999999999999999999998763

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.5e-51  Score=324.93  Aligned_cols=191  Identities=25%  Similarity=0.227  Sum_probs=170.5

Q ss_pred             CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh
Q 041986            1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK   80 (195)
Q Consensus         1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~   80 (195)
                      |.-+.+.++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++.....
T Consensus         4 m~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   83 (258)
T 3lao_A            4 MSEANSGPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLA   83 (258)
T ss_dssp             -CCSCCSSCCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCB
T ss_pred             ccccCCCCCeEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccc
Confidence            55566788899999999999999999999999999999999999999999999999999999988999999999865432


Q ss_pred             cccHHHHHHHHHHHHHHHHHH-hhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986           81 EGRVEECKELFRTLYSFVYLV-ATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR  159 (195)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~l-~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r  159 (195)
                      ....    .+...+.+++.++ .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|
T Consensus        84 ~~~~----~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r  159 (258)
T 3lao_A           84 ASGF----RYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPR  159 (258)
T ss_dssp             TTBC----CCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHH
T ss_pred             hhhH----HHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHH
Confidence            2111    1112223455677 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             cch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          160 LPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       160 ~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++| .++.+++++|++++|+||+++||||+|+|++++
T Consensus       160 ~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l  196 (258)
T 3lao_A          160 AAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEE  196 (258)
T ss_dssp             HHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTCH
T ss_pred             HhCHHHHHHHHHcCCCCCHHHHHHcCCCcEeeChhHH
Confidence            999 999999999999999999999999999998763

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.8e-49  Score=319.99  Aligned_cols=192  Identities=21%  Similarity=0.305  Sum_probs=167.3

Q ss_pred             CCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc
Q 041986            3 LKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG   82 (195)
Q Consensus         3 ~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~   82 (195)
                      ++...++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++ +|||||.|+.||+|.|++++.......
T Consensus        20 ~~~~~~~~i~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~   98 (280)
T 2f6q_A           20 FQSMGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGG   98 (280)
T ss_dssp             SSEEECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTH
T ss_pred             eecCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcch
Confidence            3444677899999999999999999999999999999999999999999999 999999999999999999875422111


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986           83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG  162 (195)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g  162 (195)
                      .......+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  178 (280)
T 2f6q_A           99 VEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMS  178 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhC
Confidence            01111223345667888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                       .++.+++++|++++|+||+++||||+|+|++++
T Consensus       179 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l  212 (280)
T 2f6q_A          179 PAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF  212 (280)
T ss_dssp             HHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcceEECHHHH
Confidence             899999999999999999999999999998763

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=1.9e-49  Score=315.87  Aligned_cols=180  Identities=26%  Similarity=0.402  Sum_probs=166.2

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      .+++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++..   +    
T Consensus         3 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~---~----   75 (255)
T 3p5m_A            3 GSMNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT---A----   75 (255)
T ss_dssp             CCBTTEEEEEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH---H----
T ss_pred             CCCceEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc---h----
Confidence            345679999999999999999999999999999999999999999999999999999999999999998752   0    


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                         .+...++++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+
T Consensus        76 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  152 (255)
T 3p5m_A           76 ---GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRAR  152 (255)
T ss_dssp             ---HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHH
T ss_pred             ---HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHH
Confidence               34456677888999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||+|+|++++
T Consensus       153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  183 (255)
T 3p5m_A          153 TSRMAMTAEKISAATAFEWGMISHITSADEY  183 (255)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEECCTTCH
T ss_pred             HHHHHHcCCCcCHHHHHHCCCCCEeeCHHHH
Confidence            9999999999999999999999999998864

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=3e-49  Score=318.78  Aligned_cols=193  Identities=17%  Similarity=0.146  Sum_probs=167.5

Q ss_pred             CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh
Q 041986            1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK   80 (195)
Q Consensus         1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~   80 (195)
                      |..+.++++.|.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++.....
T Consensus         1 ~~~~~m~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~   80 (280)
T 1pjh_A            1 MSQEIRQNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQG   80 (280)
T ss_dssp             ----CCCBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC---
T ss_pred             CCcccccCCceEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhccc
Confidence            45555567789999999999999999999999999999999999999999999999999999999999999998753211


Q ss_pred             cc-----c-HH-HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEe-CCeEEecCcccccccCCCc
Q 041986           81 EG-----R-VE-ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT-EKTVFAMPEVLIGFHPDVG  152 (195)
Q Consensus        81 ~~-----~-~~-~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~-~~a~~~~pe~~~G~~p~~g  152 (195)
                      ..     . .. ....+.....+++.++.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g  160 (280)
T 1pjh_A           81 DDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGG  160 (280)
T ss_dssp             ----CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTT
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCcc
Confidence            10     1 10 111222334577888999999999999999999999999999999999 9999999999999999999


Q ss_pred             hhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986          153 SSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       153 ~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      ++++|+|++| .++.+++++|++++|+||+++||||+|||++
T Consensus       161 ~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~  202 (280)
T 1pjh_A          161 TTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMP  202 (280)
T ss_dssp             HHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCC
T ss_pred             HHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCc
Confidence            9999999999 9999999999999999999999999999985

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=2.4e-50  Score=325.81  Aligned_cols=193  Identities=19%  Similarity=0.226  Sum_probs=166.7

Q ss_pred             CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhh
Q 041986            1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRML   79 (195)
Q Consensus         1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~   79 (195)
                      |..+..+++.|.++++++|++||||||+ .|++|.+++.+|.++++.++.|+++|+|||||.| +.||+|.|++++....
T Consensus         1 M~~~~~~~~~i~~~~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~   79 (287)
T 3gkb_A            1 MSLRNDAYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMD   79 (287)
T ss_dssp             ------CCSSEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHH
T ss_pred             CCCCCCCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhcc
Confidence            6667778899999999999999999998 7999999999999999999999999999999998 7999999999875322


Q ss_pred             hccc-HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeC-CeEEecCcccccccCCCchhhHh
Q 041986           80 KEGR-VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATE-KTVFAMPEVLIGFHPDVGSSYYL  157 (195)
Q Consensus        80 ~~~~-~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~-~a~~~~pe~~~G~~p~~g~~~~l  157 (195)
                      .... ..........+.+++.++.++||||||+|||+|+|||++|+++||+||+++ +++|++||+++|++|++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L  159 (287)
T 3gkb_A           80 ALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYL  159 (287)
T ss_dssp             HHHHHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHH
Confidence            1000 000011123456688899999999999999999999999999999999999 99999999999999999999999


Q ss_pred             hhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          158 SRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       158 ~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +|++| .++.+++++|++++|+||+++||||+|||+++
T Consensus       160 ~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~  197 (287)
T 3gkb_A          160 RGRVGRNRALEVVLTADLFDAETAASYGWINRALPADE  197 (287)
T ss_dssp             HHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHH
T ss_pred             HHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhH
Confidence            99999 99999999999999999999999999999765

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=8.9e-50  Score=321.16  Aligned_cols=190  Identities=24%  Similarity=0.341  Sum_probs=166.7

Q ss_pred             CCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            5 QSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         5 ~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      ...++.+.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++.........
T Consensus         5 ~~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (276)
T 2j5i_A            5 EGRWKTVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPE   84 (276)
T ss_dssp             TTCCSSEEEEEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCT
T ss_pred             cCCCceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchh
Confidence            44677899999999999999999999999999999999999999999999999999999999999999987543211111


Q ss_pred             HHHHHHHHHHHHH-HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           85 EECKELFRTLYSF-VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        85 ~~~~~~~~~~~~l-~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      .....+......+ +.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| 
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  164 (276)
T 2j5i_A           85 ILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGH  164 (276)
T ss_dssp             THHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCH
Confidence            1111222223333 66788999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .++.+++++|++++|+||+++||||+|||+++
T Consensus       165 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~  196 (276)
T 2j5i_A          165 RQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ  196 (276)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEEECHHH
T ss_pred             HHHHHHHHhCCcccHHHHHHcCCccEeeCHHH
Confidence            99999999999999999999999999998764

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=2.5e-49  Score=320.43  Aligned_cols=188  Identities=24%  Similarity=0.374  Sum_probs=166.0

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc---cH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG---RV   84 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~---~~   84 (195)
                      .+.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++.......   ..
T Consensus        23 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           23 SFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             CCEEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             CeEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            357999999999999999999999999999999999999999999999999999999999999999876433221   12


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCC-CchhhHhhhcch-
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPD-VGSSYYLSRLPG-  162 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~-~g~~~~l~r~~g-  162 (195)
                      .....+.+...+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +|++++|+|++| 
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~  182 (290)
T 3sll_A          103 TIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGT  182 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCH
Confidence            233456667788999999999999999999999999999999999999999999999999999999 999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|||++++
T Consensus       183 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l  215 (290)
T 3sll_A          183 SRASDIMLTGRDVDADEAERIGLVSRKVASESL  215 (290)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeChhHH
Confidence            899999999999999999999999999998763

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=4.7e-49  Score=316.71  Aligned_cols=180  Identities=24%  Similarity=0.341  Sum_probs=168.0

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++.....+  .....
T Consensus        28 ~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~~  105 (276)
T 3rrv_A           28 TEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSAD--ADLRA  105 (276)
T ss_dssp             TTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHC--HHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccc--hHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999999998754322  23334


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++.+
T Consensus       106 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~e  185 (276)
T 3rrv_A          106 KTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE  185 (276)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence            55667788999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCCCCHHHHHhcCcccccc
Q 041986          168 LGLTGATLSGEEMLFCGLATHYS  190 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv  190 (195)
                      ++++|++++|+||+++||||+||
T Consensus       186 llltG~~i~A~eA~~~GLv~~vv  208 (276)
T 3rrv_A          186 YALTGTRISAQRAVELGLANHVA  208 (276)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEE
T ss_pred             HHHcCCCCCHHHHHHcCCHHHHH
Confidence            99999999999999999999999

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=6.5e-49  Score=317.98  Aligned_cols=189  Identities=25%  Similarity=0.352  Sum_probs=168.8

Q ss_pred             CCcceEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            6 SSQIHVLVEERANSRTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~-~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      .+++.|.++++++|++|||| ||++.|++|.+|+.+|.++|+.++.|+ .++|||||.|+.||+|.|++++.........
T Consensus        20 ~~~~~v~~~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~-~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~   98 (291)
T 2fbm_A           20 STYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVKHLRNNRN   98 (291)
T ss_dssp             -CCSSEEEEECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred             CCcceEEEEEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCCCCccCCcCHHHHHhcccccch
Confidence            46778999999999999999 699999999999999999999999887 4999999999999999999987643221111


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      .....+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~  178 (291)
T 2fbm_A           99 TASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA  178 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHH
Confidence            122334455667888999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+|||++++
T Consensus       179 ~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l  210 (291)
T 2fbm_A          179 SANEMLIAGRKLTAREACAKGLVSQVFLTGTF  210 (291)
T ss_dssp             HHHHHHTSCCEEEHHHHHHTTSCSEEECSTTS
T ss_pred             HHHHHHHcCCccCHHHHHHCCCcceecChhHH
Confidence            99999999999999999999999999998875

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=8.5e-50  Score=320.62  Aligned_cols=188  Identities=21%  Similarity=0.288  Sum_probs=171.9

Q ss_pred             CCCcceEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc
Q 041986            5 QSSQIHVLVEERA-NSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         5 ~~~~~~v~~~~~~-~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~   83 (195)
                      ..+++.|.+++++ +|++||||||+ .|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++.....+  
T Consensus         9 ~~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--   85 (272)
T 3qk8_A            9 YQDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGD--   85 (272)
T ss_dssp             GGGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHC--
T ss_pred             CCCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccc--
Confidence            3457789999986 89999999999 9999999999999999999999999999999999999999999998654322  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      ......+.+..++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| 
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  165 (272)
T 3qk8_A           86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGM  165 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            2223345566778899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|||++++
T Consensus       166 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l  198 (272)
T 3qk8_A          166 AKAKYYLLTCETLSGEEAERIGLVSTCVDDDEV  198 (272)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHH
Confidence            999999999999999999999999999998763

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=5.4e-49  Score=314.38  Aligned_cols=188  Identities=21%  Similarity=0.333  Sum_probs=168.0

Q ss_pred             CcceEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEERANSRTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~-~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +++.|.++++++|++|||| ||++.|++|.+|+.+|.++|+.++.|+ +++|||||.|+.||+|.|++++..........
T Consensus         3 ~~~~i~~~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (261)
T 2gtr_A            3 RYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR   81 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred             ccceEEEEEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhh
Confidence            4567999999999999999 699999999999999999999999886 59999999999999999999876432211111


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  161 (261)
T 2gtr_A           82 ESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS  161 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHH
Confidence            22344455677888999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||+|||++++
T Consensus       162 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  192 (261)
T 2gtr_A          162 ANEMLLSGRKLTAQEACGKGLVSQVFWPGTF  192 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECGGGH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcccccChhHH
Confidence            9999999999999999999999999998753

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=4.1e-49  Score=315.72  Aligned_cols=183  Identities=24%  Similarity=0.364  Sum_probs=165.3

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.......... 
T Consensus         3 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~-   81 (266)
T 3fdu_A            3 LHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAG-   81 (266)
T ss_dssp             CCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCS-
T ss_pred             CCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchh-
Confidence            5567999999999999999999999999999999999999999999999999999999999999999987321111100 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                       ........+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++
T Consensus        82 -~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  160 (266)
T 3fdu_A           82 -PAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKA  160 (266)
T ss_dssp             -CGGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred             -hHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHH
Confidence             012234556788899999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSL  191 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~  191 (195)
                      .+++++|++++|+||+++||||+|||
T Consensus       161 ~~l~ltg~~i~A~eA~~~GLv~~vv~  186 (266)
T 3fdu_A          161 AELLFTAKKFNAETALQAGLVNEIVE  186 (266)
T ss_dssp             HHHHHHCCEECHHHHHHTTSCSEECS
T ss_pred             HHHHHhCCCcCHHHHHHCCCHHHHHH
Confidence            99999999999999999999999998

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=8.1e-49  Score=313.97  Aligned_cols=185  Identities=19%  Similarity=0.272  Sum_probs=168.2

Q ss_pred             CCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCceeccccchhHHHhhhccc
Q 041986            5 QSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG-NGRSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         5 ~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~-~g~~F~~G~dl~~~~~~~~~~~   83 (195)
                      +.+++.+.++++++|++|+|||| +.|++|.+++.+|.++|+.++.|+++++||||| .|+.||+|.|++++.. . .  
T Consensus         5 ~~~~~~i~~~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~-~--   79 (265)
T 2ppy_A            5 ETKKQYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-A-D--   79 (265)
T ss_dssp             EEECSSEEEEEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-S-C--
T ss_pred             CCCCCeEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-c-c--
Confidence            44567899999999999999999 899999999999999999999999999999999 8899999999998754 1 1  


Q ss_pred             HHHHHHHHHHH-HHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCe-EEecCcccccccCCCchhhHhhhcc
Q 041986           84 VEECKELFRTL-YSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKT-VFAMPEVLIGFHPDVGSSYYLSRLP  161 (195)
Q Consensus        84 ~~~~~~~~~~~-~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a-~~~~pe~~~G~~p~~g~~~~l~r~~  161 (195)
                       .....+.+.+ .+++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++|++|++|++++++|++
T Consensus        80 -~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~v  158 (265)
T 2ppy_A           80 -PRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLI  158 (265)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHh
Confidence             1112333445 678889999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      | ..+.+++++|++++|+||+++||||+|+|++++
T Consensus       159 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  193 (265)
T 2ppy_A          159 GYSRALDMNITGETITPQEALEIGLVNRVFPQAET  193 (265)
T ss_dssp             CHHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGH
T ss_pred             CHHHHHHHHHhCCccCHHHHHHCCCcceecCHHHH
Confidence            9 999999999999999999999999999998753

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.9e-49  Score=317.13  Aligned_cols=184  Identities=26%  Similarity=0.398  Sum_probs=168.0

Q ss_pred             CCcceEEEEEeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            6 SSQIHVLVEERAN-SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         6 ~~~~~v~~~~~~~-v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      ++++.|.++++++ |++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++......   
T Consensus         6 m~~~~i~~~~~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---   82 (263)
T 3moy_A            6 TTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPH---   82 (263)
T ss_dssp             CCCSSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHH---
T ss_pred             CCCCeEEEEEeCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCch---
Confidence            4567899999998 999999999999999999999999999999999999999999988999999999987543211   


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                       .  .+.+.+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus        83 -~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  159 (263)
T 3moy_A           83 -Q--ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKA  159 (263)
T ss_dssp             -H--HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHH
T ss_pred             -h--HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHH
Confidence             1  12334556788999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+|+|++++
T Consensus       160 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  191 (263)
T 3moy_A          160 KAMDLCLTGRSLTAEEAERVGLVSRIVPAADL  191 (263)
T ss_dssp             HHHHHHHHCCEEEHHHHHHTTSCSEEECGGGH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEecCchHH
Confidence            99999999999999999999999999998763

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=3.8e-49  Score=316.49  Aligned_cols=186  Identities=22%  Similarity=0.264  Sum_probs=166.6

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh-cccHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK-EGRVEEC   87 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~-~~~~~~~   87 (195)
                      +.|.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++..... .......
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (269)
T 1nzy_A            3 EAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHF   82 (269)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHH
Confidence            358899999999999999999999999999999999999999999999999999999999999998743210 0011111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                      ..+.+...+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++.
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (269)
T 1nzy_A           83 RIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAM  162 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHH
Confidence            234445677888999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +++++|++++|+||+++||||+|+|+++
T Consensus       163 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~  190 (269)
T 1nzy_A          163 ELMLTNRTLYPEEAKDWGLVSRVYPKDE  190 (269)
T ss_dssp             HHHHHCCCBCHHHHHHHTSCSCEECHHH
T ss_pred             HHHHcCCCCCHHHHHHCCCccEeeCHHH
Confidence            9999999999999999999999998764

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=8.2e-49  Score=312.66  Aligned_cols=181  Identities=31%  Similarity=0.460  Sum_probs=160.9

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.|.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++.....   .....
T Consensus         3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~~~   79 (257)
T 2ej5_A            3 ETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMD---HGDVL   79 (257)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------C---HHHHH
T ss_pred             CceEEEeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccc---hhHHH
Confidence            568899999999999999999999999999999999999999999999999999999999999998754221   11111


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      ..  .+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++.+
T Consensus        80 ~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T 2ej5_A           80 RS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE  157 (257)
T ss_dssp             HH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             HH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence            11  2567788899999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++|++++|+||+++||||+|+|+++
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~  184 (257)
T 2ej5_A          158 LAVLGEKVTAEEAAALGLATKVIPLSD  184 (257)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEEECGGG
T ss_pred             HHHhCCccCHHHHHHcCCcceecChhH
Confidence            999999999999999999999999875

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=5.7e-49  Score=313.75  Aligned_cols=182  Identities=26%  Similarity=0.404  Sum_probs=164.9

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      ++..|.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++......     
T Consensus         3 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-----   77 (258)
T 2pbp_A            3 EFVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPI-----   77 (258)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHH-----
T ss_pred             CcceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch-----
Confidence            456799999999999999999999999999999999999999999999999999999999999999987542110     


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ...+...+ +++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++
T Consensus        78 ~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  156 (258)
T 2pbp_A           78 RLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA  156 (258)
T ss_dssp             HHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             hHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHH
Confidence            11222233 5677889999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+++++|++++|+||+++||||+++|+++
T Consensus       157 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  185 (258)
T 2pbp_A          157 LEWLWTGARMSAKEAEQLGIVNRVVSPEL  185 (258)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECGGG
T ss_pred             HHHHHcCCccCHHHHHHcCCcceeeChHH
Confidence            99999999999999999999999999875

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1e-48  Score=316.23  Aligned_cols=181  Identities=25%  Similarity=0.381  Sum_probs=168.9

Q ss_pred             EEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986           11 VLVEER--ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus        11 v~~~~~--~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      |.++++  ++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++..   ........
T Consensus        26 v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~---~~~~~~~~  102 (286)
T 3myb_A           26 LLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA---EPSREYYE  102 (286)
T ss_dssp             SEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHS---SCCHHHHH
T ss_pred             EEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhc---cccHHHHH
Confidence            899999  9999999999999999999999999999999999999999999999999999999999865   22334445


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .+.+.+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++ ++|++++|+|++| .++.+
T Consensus       103 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~  181 (286)
T 3myb_A          103 KLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFE  181 (286)
T ss_dssp             HHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHH
Confidence            667778889999999999999999999999999999999999999999999999999999 7788999999999 99999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||+|||++++
T Consensus       182 llltG~~i~A~eA~~~GLv~~vv~~~~l  209 (286)
T 3myb_A          182 MLVTGEFVSADDAKGLGLVNRVVAPKAL  209 (286)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGH
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCHHHH
Confidence            9999999999999999999999998763

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=3.6e-49  Score=317.58  Aligned_cols=184  Identities=25%  Similarity=0.405  Sum_probs=165.4

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ++++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++......    
T Consensus        22 m~~~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~----   97 (278)
T 3h81_A           22 MTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFA----   97 (278)
T ss_dssp             -CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHH----
T ss_pred             CCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChh----
Confidence            3467899999999999999999999999999999999999999999999999999999999999999988643211    


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      .  .........+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+
T Consensus        98 ~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~  175 (278)
T 3h81_A           98 D--AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAK  175 (278)
T ss_dssp             H--HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             h--HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHH
Confidence            1  11122222267888999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||+|||++++
T Consensus       176 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l  206 (278)
T 3h81_A          176 AMDLILTGRTMDAAEAERSGLVSRVVPADDL  206 (278)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGGGH
T ss_pred             HHHHHHhCCCcCHHHHHHCCCccEEeChhHH
Confidence            9999999999999999999999999998763

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=6.2e-50  Score=320.43  Aligned_cols=186  Identities=22%  Similarity=0.218  Sum_probs=165.7

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ++++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++......... 
T Consensus         6 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-   84 (265)
T 3swx_A            6 SDYETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGAS-   84 (265)
T ss_dssp             -CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CC-
T ss_pred             CCCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhH-
Confidence            3567899999999999999999999999999999999999999999999999999999889999999998754321111 


Q ss_pred             HHHHHHHHHHHHHHHH-hhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           86 ECKELFRTLYSFVYLV-ATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l-~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                         .+.....+++.++ .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus        85 ---~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  161 (265)
T 3swx_A           85 ---LTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWG  161 (265)
T ss_dssp             ---CCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred             ---HHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHH
Confidence               1111223345567 8999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+|+|++++
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  193 (265)
T 3swx_A          162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGEH  193 (265)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEESTTCH
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCCCEecChhHH
Confidence            99999999999999999999999999998763

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=8.5e-49  Score=316.84  Aligned_cols=186  Identities=20%  Similarity=0.303  Sum_probs=167.5

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +++..+.++++++|++|+||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++....   ...
T Consensus        30 ~~~~~v~~~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~---~~~  106 (287)
T 2vx2_A           30 SEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQ---GRD  106 (287)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGG---CHH
T ss_pred             CCCcceEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhccc---chh
Confidence            34568999999999999999999999999999999999999999999999999999999999999999875321   122


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ....+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ |+|++| .+
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~  185 (287)
T 2vx2_A          107 YHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKV  185 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHH
Confidence            2234455667888899999999999999999999999999999999999999999999999999999999 999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++|+||+++||||+|||++++
T Consensus       186 A~~llltg~~i~A~eA~~~GLv~~vv~~~~l  216 (287)
T 2vx2_A          186 ALEMLFTGEPISAQEALLHGLLSKVVPEAEL  216 (287)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGGGH
T ss_pred             HHHHHHhCCCCCHHHHHHCCCcceecCHHHH
Confidence            9999999999999999999999999998753

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=5.7e-49  Score=314.44  Aligned_cols=184  Identities=26%  Similarity=0.332  Sum_probs=165.3

Q ss_pred             ceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhh--hcccHH
Q 041986            9 IHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRML--KEGRVE   85 (195)
Q Consensus         9 ~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~--~~~~~~   85 (195)
                      +.+.+++ +++|++|+||||++ |++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++....  ......
T Consensus         6 ~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (263)
T 3l3s_A            6 DGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRA   84 (263)
T ss_dssp             --CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHH
T ss_pred             cceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHH
Confidence            3666776 89999999999999 9999999999999999999999999999999999999999999876431  122334


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ....+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ ++|++++++|++| .+
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~  163 (263)
T 3l3s_A           85 FVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRA  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHHH
Confidence            455667778889999999999999999999999999999999999999999999999999999 4678999999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +.+++++|++++|+||+++||||+|||+++
T Consensus       164 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~  193 (263)
T 3l3s_A          164 VTEMALTGATYDADWALAAGLINRILPEAA  193 (263)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSSSEECCHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHHH
Confidence            999999999999999999999999999764

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.5e-49  Score=322.68  Aligned_cols=189  Identities=25%  Similarity=0.291  Sum_probs=157.6

Q ss_pred             CcceEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHh--hhccc
Q 041986            7 SQIHVLVEERA-NSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRM--LKEGR   83 (195)
Q Consensus         7 ~~~~v~~~~~~-~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~--~~~~~   83 (195)
                      .++.|.+++++ +|++||||||++.|++|.+++.+|.++|+.++.|+++|+|||||.|+.||+|.|++++...  .....
T Consensus        27 ~~~~v~~~~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~  106 (298)
T 3qre_A           27 AQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM  106 (298)
T ss_dssp             -CCSEEEEECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred             CCCeEEEEEeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            45789999999 9999999999999999999999999999999999999999999999999999999987641  11110


Q ss_pred             H--HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcc
Q 041986           84 V--EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP  161 (195)
Q Consensus        84 ~--~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~  161 (195)
                      .  .....+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  186 (298)
T 3qre_A          107 AKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLT  186 (298)
T ss_dssp             --------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHS
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhc
Confidence            0  01112222344567788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          162 G-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       162 g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      | .++.+++++|++++|+||+++||||+|||++++
T Consensus       187 G~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l  221 (298)
T 3qre_A          187 SWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQL  221 (298)
T ss_dssp             CHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGH
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHH
Confidence            9 999999999999999999999999999998763

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=2e-48  Score=309.36  Aligned_cols=180  Identities=23%  Similarity=0.328  Sum_probs=164.0

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCceeccccchhHHHhhhcccHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG-NGRSFCAGGDVVGAYRMLKEGRVEECKE   89 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~-~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (195)
                      |.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++||||| .|+.||+|.|++++.....   ......
T Consensus         2 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~---~~~~~~   78 (250)
T 2a7k_A            2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSR---SEDIEE   78 (250)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-C---HHHHHH
T ss_pred             eEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCc---hhhHHH
Confidence            678899999999999999999999999999999999999999999999999 8999999999998754211   111123


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986           90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL  168 (195)
Q Consensus        90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l  168 (195)
                      +.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +++|++| ..+.++
T Consensus        79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l  157 (250)
T 2a7k_A           79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEI  157 (250)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHH
Confidence            44556778889999999999999999999999999999999999999999999999999999999 9999999 999999


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +++|++++|+||+++||||+|+|+++
T Consensus       158 ~ltg~~~~a~eA~~~GLv~~vv~~~~  183 (250)
T 2a7k_A          158 IYQCQSLDAPRCVDYRLVNQVVESSA  183 (250)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHH
T ss_pred             HHcCCcccHHHHHHcCCcceecCHHH
Confidence            99999999999999999999998764

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=2.2e-48  Score=313.07  Aligned_cols=187  Identities=24%  Similarity=0.352  Sum_probs=166.7

Q ss_pred             cceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc---c
Q 041986            8 QIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG---R   83 (195)
Q Consensus         8 ~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~---~   83 (195)
                      +++|.+++ +++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|+.||+|.|++++.......   +
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence            56788998 6789999999999999999999999999999999999999999999999999999999886532110   1


Q ss_pred             ----HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986           84 ----VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR  159 (195)
Q Consensus        84 ----~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r  159 (195)
                          ......+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r  161 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK  161 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHH
Confidence                1122233455667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchH--HHHHHhhcCCCCCHHHHHhcCccccccCC-CC
Q 041986          160 LPGH--LGEYLGLTGATLSGEEMLFCGLATHYSLS-AV  194 (195)
Q Consensus       160 ~~g~--~a~~l~l~g~~~~a~ea~~~Glv~~vv~~-~~  194 (195)
                      ++|.  .+.+++++|++++|+||+++||||+|||+ ++
T Consensus       162 ~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~  199 (275)
T 1dci_A          162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDV  199 (275)
T ss_dssp             TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHH
T ss_pred             HhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHH
Confidence            9994  79999999999999999999999999997 54

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.2e-48  Score=312.80  Aligned_cols=185  Identities=20%  Similarity=0.261  Sum_probs=166.7

Q ss_pred             CcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +++.+.+++ +++|++||||||+ .|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++ +...... ..+
T Consensus         8 ~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~-~~~   84 (264)
T 1wz8_A            8 RYPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRA-SHE   84 (264)
T ss_dssp             HCTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHH-CHH
T ss_pred             CCCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-ccccccc-chH
Confidence            345689999 9999999999999 99999999999999999999999999999999999999999999 6542110 111


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ....+.+...+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .+
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  164 (264)
T 1wz8_A           85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAK  164 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHH
Confidence            11234456678888999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +.+++++|++++|+||+++||||+|||+++
T Consensus       165 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  194 (264)
T 1wz8_A          165 AKYHLLLNEPLTGEEAERLGLVALAVEDEK  194 (264)
T ss_dssp             HHHHHHHTCCEEHHHHHHHTSSSEEECGGG
T ss_pred             HHHHHHcCCCCCHHHHHHCCCceeecChhH
Confidence            999999999999999999999999999875

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.2e-48  Score=313.07  Aligned_cols=184  Identities=22%  Similarity=0.344  Sum_probs=163.5

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ++++.|.++++++|++||||||++.|++|.+++.+|.++++.++.| ++|+|||||.|+.||+|.|++++......... 
T Consensus         4 m~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-   81 (267)
T 3hp0_A            4 VTYQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRK-   81 (267)
T ss_dssp             -CCSSEEEEEETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCC-
T ss_pred             CCCceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHH-
Confidence            3467899999999999999999999999999999999999999986 69999999999999999999998764211100 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                       .........+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +++|+|++| .+
T Consensus        82 -~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~  159 (267)
T 3hp0_A           82 -QASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQK  159 (267)
T ss_dssp             -SCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHH
T ss_pred             -HHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHH
Confidence             012233556788889999999999999999999999999999999999999999999999999875 778999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      +.+++++|++++|+||+++||||+|+|+.
T Consensus       160 A~ellltg~~i~A~eA~~~GLV~~vv~~~  188 (267)
T 3hp0_A          160 AHYMTLMTKPISVQEASEWGLIDAFDAES  188 (267)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSSSCBCSCT
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCCH
Confidence            99999999999999999999999999874

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=1.3e-49  Score=317.98  Aligned_cols=183  Identities=26%  Similarity=0.304  Sum_probs=163.1

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++.......... 
T Consensus         9 ~m~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~-   87 (262)
T 3r9q_A            9 MQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHP-   87 (262)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCT-
T ss_pred             cCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHH-
Confidence            3557999999999999999999999999999999999999999999999999999999999999999876433211100 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                           .....+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++
T Consensus        88 -----~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  162 (262)
T 3r9q_A           88 -----HGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRA  162 (262)
T ss_dssp             -----TSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHH
T ss_pred             -----hhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHH
Confidence                 01112334556899999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+|||++++
T Consensus       163 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l  192 (262)
T 3r9q_A          163 MDLILTGRPVHANEALDIGLVNRVVARGQA  192 (262)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECTTCH
T ss_pred             HHHHHcCCcCCHHHHHHcCCccEecChhHH
Confidence            999999999999999999999999998864

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=2.8e-48  Score=305.42  Aligned_cols=181  Identities=21%  Similarity=0.221  Sum_probs=165.4

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.|.++++++|++||||||+ .|++|.+++.+|.++++.++.| ++|+|||||.|+.||+|.|++++....    .....
T Consensus         5 ~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~----~~~~~   78 (233)
T 3r6h_A            5 GPVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGE----AKPAI   78 (233)
T ss_dssp             CCEEEEEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC-------CHHHH
T ss_pred             CceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccC----hHHHH
Confidence            46999999999999999985 7999999999999999999987 699999999999999999999986531    22334


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .+.+...+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| .++.+
T Consensus        79 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~  158 (233)
T 3r6h_A           79 DMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQ  158 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHH
Confidence            56667788999999999999999999999999999999999999999999999999999998999999999999 89999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||+|||++++
T Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l  186 (233)
T 3r6h_A          159 AAGLAKTFFGETALAAGFIDEISLPEVV  186 (233)
T ss_dssp             HHHSCCEECHHHHHHHTSCSEECCGGGH
T ss_pred             HHHcCCcCCHHHHHHcCCCcEeeCHHHH
Confidence            9999999999999999999999998763

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=2.8e-49  Score=314.91  Aligned_cols=178  Identities=27%  Similarity=0.384  Sum_probs=160.2

Q ss_pred             CCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            5 QSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         5 ~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      +++++.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++...      
T Consensus         5 m~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~------   78 (256)
T 3pe8_A            5 MADSPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT------   78 (256)
T ss_dssp             ---CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------
T ss_pred             CCCCCcEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh------
Confidence            34567899999999999999999999999999999999999999999999999999999999999999987542      


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                             ..+..+..++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus        79 -------~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  151 (256)
T 3pe8_A           79 -------TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVG  151 (256)
T ss_dssp             -------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHH
T ss_pred             -------HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHH
Confidence                   11223346678999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+|+|++++
T Consensus       152 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  183 (256)
T 3pe8_A          152 LARRMSLTGDYLSAQDALRAGLVTEVVAHDDL  183 (256)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSCEECGGGH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCCeEEeCHhHH
Confidence            99999999999999999999999999998763

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=1.5e-48  Score=312.45  Aligned_cols=184  Identities=27%  Similarity=0.410  Sum_probs=158.6

Q ss_pred             CCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            5 QSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         5 ~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      ++.++.|.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++ ..  . ... 
T Consensus         5 m~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~--~-~~~-   79 (265)
T 3rsi_A            5 MSAARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DG--W-MVR-   79 (265)
T ss_dssp             ----CCEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------
T ss_pred             CCCCCcEEEEEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-cc--c-ccc-
Confidence            345778999999999999999999999999999999999999999999999999999999999999998 21  1 111 


Q ss_pred             HHHHHHHHHHHH-HHHHH-h--hCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986           85 EECKELFRTLYS-FVYLV-A--TYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL  160 (195)
Q Consensus        85 ~~~~~~~~~~~~-l~~~l-~--~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~  160 (195)
                        ...+...... ++.++ .  .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+
T Consensus        80 --~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  157 (265)
T 3rsi_A           80 --DGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQ  157 (265)
T ss_dssp             -------CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHH
T ss_pred             --hHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHH
Confidence              1122223345 77788 8  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +| .++.+++++|++++|+||+++||||+|||++++
T Consensus       158 vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  193 (265)
T 3rsi_A          158 IPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTA  193 (265)
T ss_dssp             SCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCH
T ss_pred             hCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHH
Confidence            99 999999999999999999999999999998864

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=4.1e-48  Score=307.99  Aligned_cols=182  Identities=31%  Similarity=0.419  Sum_probs=162.3

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      +.++ +++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++............ ..
T Consensus         2 i~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~-~~   79 (253)
T 1uiy_A            2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENY-RH   79 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHH-HH
T ss_pred             EEEE-eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHH-HH
Confidence            5678 899999999999999999999999999999999999999999999999999999999987653100111111 11


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG  169 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~  169 (195)
                      .....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +++++|++| .++.+++
T Consensus        80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~  158 (253)
T 1uiy_A           80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHH
Confidence            11256788899999999999999999999999999999999999999999999999999999 999999999 9999999


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++|++++|+||+++||||+|+|++++
T Consensus       159 ltg~~~~a~eA~~~Glv~~vv~~~~l  184 (253)
T 1uiy_A          159 LTGRLVEAREAKALGLVNRIAPPGKA  184 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCH
T ss_pred             HhCCccCHHHHHHCCCcceecChhHH
Confidence            99999999999999999999998763

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=1e-48  Score=314.76  Aligned_cols=186  Identities=19%  Similarity=0.260  Sum_probs=161.9

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-----CC-CceeccccchhHHHhhh
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG-----NG-RSFCAGGDVVGAYRMLK   80 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~-----~g-~~F~~G~dl~~~~~~~~   80 (195)
                      +++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||     .| +.||+|.|++++.....
T Consensus         8 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~   87 (275)
T 4eml_A            8 HYDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY   87 (275)
T ss_dssp             ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred             CCceEEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccc
Confidence            4678999999999999999999999999999999999999999999999999999     88 59999999998764211


Q ss_pred             cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986           81 EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL  160 (195)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~  160 (195)
                      .. ..  .........++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|+|+
T Consensus        88 ~~-~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~  164 (275)
T 4eml_A           88 ID-DQ--GTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARI  164 (275)
T ss_dssp             ----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHH
T ss_pred             cc-hh--hHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHH
Confidence            10 00  0111134567888999999999999999999999999999999999999999999999999888889999999


Q ss_pred             ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +| .++.+++++|++++|+||+++||||+|||++++
T Consensus       165 vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l  200 (275)
T 4eml_A          165 VGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRL  200 (275)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGH
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHH
Confidence            99 999999999999999999999999999998763

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=5.6e-48  Score=310.24  Aligned_cols=187  Identities=22%  Similarity=0.305  Sum_probs=162.3

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-ceeccccchhHHHhhhcccH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR-SFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~-~F~~G~dl~~~~~~~~~~~~   84 (195)
                      ..++.|.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+ .||+|.|++++.........
T Consensus        10 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~   89 (273)
T 2uzf_A           10 REYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGED   89 (273)
T ss_dssp             BCCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCS
T ss_pred             CCCceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhh
Confidence            34567999999999999999999999999999999999999999999999999999998 99999999987541110000


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                       ...  .....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus        90 -~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  166 (273)
T 2uzf_A           90 -QIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK  166 (273)
T ss_dssp             -SSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHH
T ss_pred             -hHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHH
Confidence             000  001345677888999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+|+|++++
T Consensus       167 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  198 (273)
T 2uzf_A          167 KAREIWYLCRQYNAQEALDMGLVNTVVPLEKV  198 (273)
T ss_dssp             HHHHHHHTCCCEEHHHHHHHTSSSEEECGGGS
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCCccccCHHHH
Confidence            99999999999999999999999999998764

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=2.2e-48  Score=314.65  Aligned_cols=188  Identities=19%  Similarity=0.297  Sum_probs=162.3

Q ss_pred             CCcceEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhccc
Q 041986            6 SSQIHVLVEER-ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         6 ~~~~~v~~~~~-~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~   83 (195)
                      ..++.|.++++ ++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.| +.||+|.|++++....... 
T Consensus        24 ~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~-  102 (289)
T 3t89_A           24 EGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK-  102 (289)
T ss_dssp             TTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------
T ss_pred             CCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch-
Confidence            45678999999 99999999999999999999999999999999999999999999999 5999999999875421111 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                       +..........++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|+|++| 
T Consensus       103 -~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~  181 (289)
T 3t89_A          103 -DDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ  181 (289)
T ss_dssp             --------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred             -hhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence             111112223557888899999999999999999999999999999999999999999999998887778999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|||++++
T Consensus       182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l  214 (289)
T 3t89_A          182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADL  214 (289)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGH
T ss_pred             HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHH
Confidence            999999999999999999999999999998763

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=2.1e-48  Score=319.80  Aligned_cols=189  Identities=24%  Similarity=0.312  Sum_probs=163.7

Q ss_pred             CcceEEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-------ceeccccchhHHH
Q 041986            7 SQIHVLVEER--ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR-------SFCAGGDVVGAYR   77 (195)
Q Consensus         7 ~~~~v~~~~~--~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~-------~F~~G~dl~~~~~   77 (195)
                      +++.|.++++  ++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+       .||+|.|++++..
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~  132 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR  132 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-
T ss_pred             CCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhc
Confidence            4667999986  999999999999999999999999999999999999999999999995       8999999987643


Q ss_pred             hhh---cc----cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEe-CCeEEecCcccccccC
Q 041986           78 MLK---EG----RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT-EKTVFAMPEVLIGFHP  149 (195)
Q Consensus        78 ~~~---~~----~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~-~~a~~~~pe~~~G~~p  149 (195)
                      ...   ..    ..+........+.++++++..+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          133 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             ---------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            211   00    001111112234567888999999999999999999999999999999999 9999999999999999


Q ss_pred             CCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          150 DVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       150 ~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++|++++|+|++| .+|++++++|++++|+||+++||||+|||+++|
T Consensus       213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l  259 (334)
T 3t8b_A          213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAEL  259 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGH
T ss_pred             cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHH
Confidence            9999999999999 999999999999999999999999999998763

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=9.5e-49  Score=315.51  Aligned_cols=185  Identities=26%  Similarity=0.340  Sum_probs=153.9

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.|.++++++|++||||||++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.........  
T Consensus        18 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--   95 (278)
T 4f47_A           18 SGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSF--   95 (278)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-------------------
T ss_pred             CCCceEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhH--
Confidence            456799999999999999999999999999999999999999999999999999999999999999987654321110  


Q ss_pred             HHHHHHHHHHHHHHHh---hCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           87 CKELFRTLYSFVYLVA---TYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~---~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                        ........+++.+.   ++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| 
T Consensus        96 --~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  173 (278)
T 4f47_A           96 --KDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPY  173 (278)
T ss_dssp             -------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCH
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCH
Confidence              11112334455666   899999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|+|++++
T Consensus       174 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  206 (278)
T 4f47_A          174 TVACDLLLTGRHITAAEAKEMGLVGHVVPDGQA  206 (278)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCH
T ss_pred             HHHHHHHHcCCcCCHHHHHHCCCceEeeChhHH
Confidence            999999999999999999999999999999864

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=3e-48  Score=326.37  Aligned_cols=189  Identities=39%  Similarity=0.640  Sum_probs=172.6

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcc---
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEG---   82 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~---   82 (195)
                      .++.|.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.| +.||+|.|++++.......   
T Consensus        40 ~~~~v~~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~  119 (407)
T 3ju1_A           40 VFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ  119 (407)
T ss_dssp             EEEEEECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSS
T ss_pred             ccceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccc
Confidence            456788999999999999999999999999999999999999999999999999999 8999999999987543211   


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986           83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG  162 (195)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g  162 (195)
                      .......++....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus       120 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g  199 (407)
T 3ju1_A          120 VTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG  199 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence            22334556666778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|||++++
T Consensus       200 ~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l  232 (407)
T 3ju1_A          200 KMGLFLGLTAYHMNAADACYVGLADHYLNRDDK  232 (407)
T ss_dssp             THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGH
T ss_pred             HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHH
Confidence            889999999999999999999999999998763

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=7e-48  Score=309.54  Aligned_cols=187  Identities=22%  Similarity=0.358  Sum_probs=166.2

Q ss_pred             CCCcceEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhh
Q 041986            5 QSSQIHVLVEE----RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRML   79 (195)
Q Consensus         5 ~~~~~~v~~~~----~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~   79 (195)
                      +.+.+.+.+++    +++|++|+||||++.|++|.+++.+|.++|+.++.|+++++|||||.| +.||+|.|++++....
T Consensus         4 ~~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~   83 (272)
T 1hzd_A            4 MKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMS   83 (272)
T ss_dssp             ---CCSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSC
T ss_pred             ccCCCcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccC
Confidence            33445566654    689999999999999999999999999999999999999999999998 7999999999875321


Q ss_pred             hcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhh
Q 041986           80 KEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR  159 (195)
Q Consensus        80 ~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r  159 (195)
                          ......+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|
T Consensus        84 ----~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r  159 (272)
T 1hzd_A           84 ----SSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR  159 (272)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHH
Confidence                1222344456677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          160 LPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       160 ~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++| ..+.+++++|++++|+||+++||||+|+|++++
T Consensus       160 ~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  196 (272)
T 1hzd_A          160 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE  196 (272)
T ss_dssp             HHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTT
T ss_pred             HhCHHHHHHHHHcCCcCCHHHHHHCCCcceecChhhh
Confidence            999 999999999999999999999999999998864

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=8.8e-48  Score=302.38  Aligned_cols=179  Identities=15%  Similarity=0.128  Sum_probs=164.0

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.|.++++++|++||||||+ .|++|.+++.+|.++++.++.|  .++|||||.|+.||+|.|++++...     .....
T Consensus         6 ~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~-----~~~~~   77 (232)
T 3ot6_A            6 DLVSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSS-----AEAAI   77 (232)
T ss_dssp             HHEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHC-----HHHHH
T ss_pred             cceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhC-----hHHHH
Confidence            46999999999999999985 7999999999999999999975  4899999999999999999998652     12234


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                      ++.+..+++++++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++++++++++++| .++.
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~  157 (232)
T 3ot6_A           78 NLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFN  157 (232)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHH
Confidence            56667788999999999999999999999999999999999999998 899999999999988888899999999 9999


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++||||+|||++++
T Consensus       158 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l  186 (232)
T 3ot6_A          158 RSVINAEMFDPEGAMAAGFLDKVVSVEEL  186 (232)
T ss_dssp             HHHTSCCEECHHHHHHHTSCSEEECTTTH
T ss_pred             HHHHcCCccCHHHHHHCCCCCEecCHHHH
Confidence            99999999999999999999999998864

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.6e-47  Score=306.70  Aligned_cols=180  Identities=25%  Similarity=0.304  Sum_probs=158.7

Q ss_pred             ceEEEE----EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh-ccc
Q 041986            9 IHVLVE----ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK-EGR   83 (195)
Q Consensus         9 ~~v~~~----~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~-~~~   83 (195)
                      +.+.++    ++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.|+.||+|.|++++..... ...
T Consensus         7 ~~v~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (267)
T 3oc7_A            7 ALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSA   86 (267)
T ss_dssp             SSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CH
T ss_pred             cccCCCCccceeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhh
Confidence            578888    899999999999999999999999999999999999999999999999999999999998762111 111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      ......+.+...+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++ ++| 
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~  165 (267)
T 3oc7_A           87 YDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSA  165 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCH
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCH
Confidence            112234566778899999999999999999999999999999999999999999999999999999999999999 889 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~v  189 (195)
                      .++.+++++|++++|+||+++||||+|
T Consensus       166 ~~A~~l~ltg~~~~a~eA~~~GLv~~v  192 (267)
T 3oc7_A          166 RAAARYYLTGEKFDARRAEEIGLITMA  192 (267)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSSSEE
T ss_pred             HHHHHHHHcCCccCHHHHHHCCChhhh
Confidence            999999999999999999999999999

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=1.6e-49  Score=318.05  Aligned_cols=183  Identities=25%  Similarity=0.390  Sum_probs=165.0

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.........  
T Consensus         5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--   82 (265)
T 3qxz_A            5 MVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRN--   82 (265)
T ss_dssp             -CCEEEEEEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCS--
T ss_pred             ccceEEEEEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHH--
Confidence            356899999999999999999999999999999999999999999999999999999999999999987653221111  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                        ..... .+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++
T Consensus        83 --~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  159 (265)
T 3qxz_A           83 --PDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVA  159 (265)
T ss_dssp             --SCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHH
T ss_pred             --HHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence              11112 45667788999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+++++|++++|+||+++||||+|||+++
T Consensus       160 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~  188 (265)
T 3qxz_A          160 AELLLTGASFSAQRAVETGLANRCLPAGK  188 (265)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSCSEEECHHH
T ss_pred             HHHHHcCCCcCHHHHHHCCCccEeeCHHH
Confidence            99999999999999999999999999764

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=5.6e-48  Score=308.39  Aligned_cols=185  Identities=13%  Similarity=0.136  Sum_probs=167.1

Q ss_pred             CcceEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEERA-NSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~~~-~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      +++.|.+++++ +|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++....   +..
T Consensus        21 ~~~~i~~~~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~---~~~   97 (263)
T 2j5g_A           21 KYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVT---NPR   97 (263)
T ss_dssp             SCTTEEEEECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTT---SHH
T ss_pred             CCCeEEEEEcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccC---CHH
Confidence            45579999999 99999999999999999999999999999999999999999999999999999999875321   112


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEec-CcccccccCCCchhhHhhhcch-H
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM-PEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~-pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      ....+...+.+++.++.++||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++++|++| .
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~  176 (263)
T 2j5g_A           98 EWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLY  176 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHH
Confidence            22234445667888999999999999999999 5999999999999999999999 9999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+|||++++
T Consensus       177 ~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l  208 (263)
T 2j5g_A          177 RGRYFLFTQEKLTAQQAYELNVVHEVLPQSKL  208 (263)
T ss_dssp             HHHHHHHTTCCEEHHHHHHTTSCSEEECGGGH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEecChHHH
Confidence            99999999999999999999999999998753

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=8.6e-48  Score=309.98  Aligned_cols=188  Identities=20%  Similarity=0.276  Sum_probs=159.6

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc-H
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR-V   84 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~-~   84 (195)
                      ..++.|.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++........ .
T Consensus        17 ~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~   96 (279)
T 3t3w_A           17 RTEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLE   96 (279)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHH
T ss_pred             ccCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchH
Confidence            356789999999999999999999999999999999999999999999999999999999999999998865432211 1


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      .......+.+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+ |++++..+ +|++| .
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG~~  174 (279)
T 3t3w_A           97 FIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELGPR  174 (279)
T ss_dssp             HHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcCHH
Confidence            122223345567788999999999999999999999999999999999999999999999999 44444444 99999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++.+++++|++++|+||+++||||+|||++++
T Consensus       175 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l  206 (279)
T 3t3w_A          175 KAKEILFTGRAMTAEEVAQTGMVNRVVPRDRL  206 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGH
T ss_pred             HHHHHHHcCCccCHHHHHHCCCCcEeeChHHH
Confidence            99999999999999999999999999998763

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=8.7e-48  Score=320.03  Aligned_cols=188  Identities=41%  Similarity=0.723  Sum_probs=167.7

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ..+.|.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.| +.||+|.|++++......... 
T Consensus         4 ~~~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~-   82 (363)
T 3bpt_A            4 AAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQK-   82 (363)
T ss_dssp             CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCC-
T ss_pred             CCcceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccH-
Confidence            344789999999999999999999999999999999999999999999999999998 999999999987653211110 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLG  165 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a  165 (195)
                      ....+.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.++
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a  162 (363)
T 3bpt_A           83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLG  162 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHHHH
Confidence            01223344456788899999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+|||++++
T Consensus       163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l  192 (363)
T 3bpt_A          163 YFLALTGFRLKGRDVYRAGIATHFVDSEKL  192 (363)
T ss_dssp             HHHHHHCCCEETHHHHHTTSCSEECCGGGH
T ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCHHHH
Confidence            999999999999999999999999998753

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=5.2e-49  Score=316.51  Aligned_cols=188  Identities=26%  Similarity=0.319  Sum_probs=159.4

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh--cc-c
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK--EG-R   83 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~--~~-~   83 (195)
                      .++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++.....  .. .
T Consensus         9 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   88 (274)
T 3tlf_A            9 SFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERP   88 (274)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------C
T ss_pred             cCCceEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccc
Confidence            44589999999999999999999999999999999999999999999999999999999999999998865332  00 0


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      .......+...++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| +|++++|+|++| 
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~  167 (274)
T 3tlf_A           89 YLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPR  167 (274)
T ss_dssp             TTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCH
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCH
Confidence            000001111334566778899999999999999999999999999999999999999999999999 999999999999 


Q ss_pred             HHHHHHhhcCC--CCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGA--TLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~--~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|+  +++|+||+++||||+|+|++++
T Consensus       168 ~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l  202 (274)
T 3tlf_A          168 SIALRMALMGKHERMSAQRAYELGLISEIVEHDRL  202 (274)
T ss_dssp             HHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHH
Confidence            99999999999  9999999999999999998763

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.6e-47  Score=304.69  Aligned_cols=185  Identities=21%  Similarity=0.275  Sum_probs=163.0

Q ss_pred             CCCCCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh
Q 041986            1 MGLKQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK   80 (195)
Q Consensus         1 m~~~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~   80 (195)
                      |.++...  .|.++++++|++|+||||++.|++|.+++.+|.++++.++. +++|+|||||.|+.||+|.|++++.....
T Consensus         1 ms~~~~~--~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   77 (254)
T 3isa_A            1 MSLSASL--PLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSE   77 (254)
T ss_dssp             ---CCCC--SEEEEECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCH
T ss_pred             CCCCCCc--eEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCc
Confidence            4544432  29999999999999999999999999999999999999987 58999999999999999999998754321


Q ss_pred             cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhc
Q 041986           81 EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL  160 (195)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~  160 (195)
                          ...........+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|   ++++|+|+
T Consensus        78 ----~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~  150 (254)
T 3isa_A           78 ----GDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDI  150 (254)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHH
T ss_pred             ----hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHH
Confidence                12223344567788999999999999999999999999999999999999999999999999998   47999999


Q ss_pred             ch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          161 PG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       161 ~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +| .++.+++++|++++|+||+++||||+|||++++
T Consensus       151 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  186 (254)
T 3isa_A          151 VGADQALSILGSARAFDADEARRIGFVRDCAAQAQW  186 (254)
T ss_dssp             HCHHHHHHHHTTTCEEEHHHHHHTTSSSEECCGGGH
T ss_pred             cCHHHHHHHHHhCCCCcHHHHHHCCCccEEeChhHH
Confidence            99 999999999999999999999999999998763

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=1.5e-48  Score=311.75  Aligned_cols=181  Identities=18%  Similarity=0.284  Sum_probs=162.3

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CC-CceeccccchhHHHhhhcccHH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKG-NG-RSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~-~g-~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ++.|.++++++|++|+||||++.|++|.+++.+|.++++.++.|+ +++||||| .| +.||+|.|++++.....+. . 
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~-~-   79 (261)
T 1ef8_A            3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP-L-   79 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT-T-
T ss_pred             cceEEEEEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh-H-
Confidence            457999999999999999999999999999999999999999999 99999999 99 9999999999875422111 1 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                         .....+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .+
T Consensus        80 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  156 (261)
T 1ef8_A           80 ---SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             ---CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             ---HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHH
Confidence               11123456778899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +.+++++|++++|+||+++||||+|+|+++
T Consensus       157 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  186 (261)
T 1ef8_A          157 VKELIFTASPITAQRALAVGILNHVVEVEE  186 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHH
T ss_pred             HHHHHHcCCccCHHHHHHCCCcccccCHHH
Confidence            999999999999999999999999998754

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=4e-48  Score=313.07  Aligned_cols=187  Identities=18%  Similarity=0.177  Sum_probs=165.5

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-ceeccccchhHHHhhhcccH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR-SFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~-~F~~G~dl~~~~~~~~~~~~   84 (195)
                      .+++.|.++++++|++||||||+ .|++|.+++.+|.++++.++.|+++|+|||||.|+ .||+|.|++++.........
T Consensus         5 ~~~~~v~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~   83 (289)
T 3h0u_A            5 ASYETIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAK   83 (289)
T ss_dssp             CCCSSEEEEEETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHT
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhh
Confidence            45778999999999999999998 89999999999999999999999999999999995 55667799988653221100


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcch-
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                       ....+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|+|++| 
T Consensus        84 -~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  162 (289)
T 3h0u_A           84 -AGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGR  162 (289)
T ss_dssp             -TSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCH
T ss_pred             -hHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCH
Confidence             00022335667888999999999999999999999999999999999998 999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .++.+++++|++++|+||+++||||+|||+++
T Consensus       163 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~  194 (289)
T 3h0u_A          163 GRALEAVLTSSDFDADLAERYGWVNRAVPDAE  194 (289)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecCHHH
Confidence            99999999999999999999999999999764

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.1e-47  Score=306.05  Aligned_cols=182  Identities=18%  Similarity=0.218  Sum_probs=165.1

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      ++.|.++++++|++||||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++...    +....
T Consensus        15 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~~   90 (257)
T 1szo_A           15 YENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG----TPHDW   90 (257)
T ss_dssp             CTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCS----SHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcC----CHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999986421    11222


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEec-CcccccccCCCchhhHhhhcch-HHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM-PEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~-pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ..+.....+++.++..+||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++++|++| .++
T Consensus        91 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A  169 (257)
T 1szo_A           91 DEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRG  169 (257)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            234445667888999999999999999999 5999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+++++|++++|+||+++||||+|||+++
T Consensus       170 ~~llltG~~~~A~eA~~~GLv~~vv~~~~  198 (257)
T 1szo_A          170 RYFLLTGQELDARTALDYGAVNEVLSEQE  198 (257)
T ss_dssp             HHHHHTTCEEEHHHHHHHTSCSEEECHHH
T ss_pred             HHHHHcCCCCCHHHHHHCCCceEEeChHH
Confidence            99999999999999999999999998754

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=1.3e-47  Score=315.81  Aligned_cols=187  Identities=21%  Similarity=0.253  Sum_probs=161.3

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc--
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR--   83 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~--   83 (195)
                      ++++.|.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|+.||+|.|++++........  
T Consensus        32 ~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~  111 (333)
T 3njd_A           32 DNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGG  111 (333)
T ss_dssp             TSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC--------------
T ss_pred             CCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccccc
Confidence            567789999999999999999999999999999999999999999999999999999999999999999865322110  


Q ss_pred             ------------------------HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEe
Q 041986           84 ------------------------VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFA  139 (195)
Q Consensus        84 ------------------------~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~  139 (195)
                                              ......+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~  191 (333)
T 3njd_A          112 SPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIG  191 (333)
T ss_dssp             -CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEE
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeee
Confidence                                    00123445666778889999999999999999999999999999999999999999


Q ss_pred             cCcccccccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          140 MPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       140 ~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +||+++|++|++|   ++++++| .++.+++++|++++|+||+++||||+|||++++
T Consensus       192 ~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l  245 (333)
T 3njd_A          192 YPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADL  245 (333)
T ss_dssp             CGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGH
T ss_pred             chhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHH
Confidence            9999999999876   5789999 999999999999999999999999999998763

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=3.4e-48  Score=306.66  Aligned_cols=177  Identities=21%  Similarity=0.290  Sum_probs=161.3

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +-..++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.||+|.|++++...... ..    
T Consensus         3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~----   77 (243)
T 2q35_A            3 VVQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRG-EV----   77 (243)
T ss_dssp             SEEEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTT-CC----
T ss_pred             eeEEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccch-hh----
Confidence            3456788999999999999999999999999999999999999999999999999999999999987543211 10    


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                          ...+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .++.+
T Consensus        78 ----~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  153 (243)
T 2q35_A           78 ----EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQE  153 (243)
T ss_dssp             ----CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHH
T ss_pred             ----HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHH
Confidence                1235667889999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++|++++|+||+++||||+++|+++
T Consensus       154 l~ltg~~~~a~eA~~~GLv~~vv~~~~  180 (243)
T 2q35_A          154 MIYTGENYRGKELAERGIPFPVVSRQD  180 (243)
T ss_dssp             HHHHCCCEEHHHHHHTTCSSCEECHHH
T ss_pred             HHHcCCCCCHHHHHHcCCCCEecChhH
Confidence            999999999999999999999998764

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5.4e-48  Score=308.45  Aligned_cols=179  Identities=25%  Similarity=0.351  Sum_probs=157.6

Q ss_pred             CCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc
Q 041986            4 KQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         4 ~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~   83 (195)
                      ...+++.|.++++++|++||||||++.|++|.+++.+|.+++++++.| ++|+|||||.|+.||+|.|++....     .
T Consensus        16 ~~~~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~~-----~   89 (264)
T 3he2_A           16 TQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDAF-----A   89 (264)
T ss_dssp             ------CEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTT-----G
T ss_pred             cCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccchh-----h
Confidence            344677899999999999999999999999999999999999999987 9999999999999999999983110     1


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                          ..+.+...+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| 
T Consensus        90 ----~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  165 (264)
T 3he2_A           90 ----ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGH  165 (264)
T ss_dssp             ----GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCH
T ss_pred             ----HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCH
Confidence                123345667888999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      .++++++++|++++|+||+++||||+|++.
T Consensus       166 ~~A~~llltG~~i~A~eA~~~GLV~~v~~~  195 (264)
T 3he2_A          166 GRARAMLLSAEKLTAEIALHTGMANRIGTL  195 (264)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEECCH
T ss_pred             HHHHHHHHcCCCccHHHHHHCCCeEEEecH
Confidence            999999999999999999999999999863

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=5.8e-47  Score=308.51  Aligned_cols=186  Identities=19%  Similarity=0.278  Sum_probs=162.1

Q ss_pred             eEEEEEeCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeCCCceeccccchhHHHhhh
Q 041986           10 HVLVEERANSRTVILNRPHV----LNALNTSMVALLTKQYESWEN-----NSGVDFVVIKGNGRSFCAGGDVVGAYRMLK   80 (195)
Q Consensus        10 ~v~~~~~~~v~~i~l~~p~~----~N~~~~~~~~~l~~~l~~~~~-----~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~   80 (195)
                      .|.++++++|++||||+|++    .|++|.+|+.+|.++|+.++.     |+++++|||||.|+.||+|.|++++.....
T Consensus        33 ~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~  112 (305)
T 3m6n_A           33 RIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIR  112 (305)
T ss_dssp             EEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccc
Confidence            45557789999999999988    459999999999999999987     589999999999999999999999876543


Q ss_pred             cccHHHHHHHHHHHHHHHHHH---hhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHh
Q 041986           81 EGRVEECKELFRTLYSFVYLV---ATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYL  157 (195)
Q Consensus        81 ~~~~~~~~~~~~~~~~l~~~l---~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l  157 (195)
                      .........+.+.+.+.+..+   ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L  192 (305)
T 3m6n_A          113 EGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFM  192 (305)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHH
Confidence            333333334444444445444   46899999999999999999999999999999999999999999999999999999


Q ss_pred             hhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          158 SRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       158 ~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +|++| .++.+++++|++++|+||+++||||+|||++++
T Consensus       193 ~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l  231 (305)
T 3m6n_A          193 CQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQG  231 (305)
T ss_dssp             TTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCH
T ss_pred             HHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHH
Confidence            99999 999999999999999999999999999999864

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=3.5e-48  Score=310.12  Aligned_cols=182  Identities=24%  Similarity=0.371  Sum_probs=154.8

Q ss_pred             CCCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc
Q 041986            4 KQSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         4 ~~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~   83 (195)
                      +...++.|.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++........
T Consensus        10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   89 (265)
T 3qxi_A           10 NGDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVV   89 (265)
T ss_dssp             -----CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEE
T ss_pred             cCCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhh
Confidence            34467789999999999999999999999999999999999999999999999999999999999999998765432211


Q ss_pred             HHHHHHHHHHHHHH-HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986           84 VEECKELFRTLYSF-VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l-~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g  162 (195)
                      ..         ..+ +..+.. ||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus        90 ~~---------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  159 (265)
T 3qxi_A           90 EG---------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIP  159 (265)
T ss_dssp             TT---------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSC
T ss_pred             hh---------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhC
Confidence            10         011 223334 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                       .++.+++++|++++|+||+++||||+|||++++
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  193 (265)
T 3qxi_A          160 YAIAMELALTGDNLSAERAHALGMVNVLAEPGAA  193 (265)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCH
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHH
Confidence             999999999999999999999999999998864

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=3e-48  Score=310.87  Aligned_cols=186  Identities=26%  Similarity=0.387  Sum_probs=161.3

Q ss_pred             CCCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhccc
Q 041986            5 QSSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         5 ~~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~   83 (195)
                      +.+++.|.++++++|++||||||++.|++|.+++.+|.++++.++.|+++|+|||||.| +.||+|.|++++........
T Consensus         5 m~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~   84 (267)
T 3r9t_A            5 MTDAPGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYH   84 (267)
T ss_dssp             ---CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSC
T ss_pred             CCCCCcEEEEEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhh
Confidence            34567899999999999999999999999999999999999999999999999999999 59999999999865432211


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      ... ..+.  ...+  ...++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| 
T Consensus        85 ~~~-~~~~--~~~~--~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  159 (267)
T 3r9t_A           85 PDH-PEWG--FAGY--VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPR  159 (267)
T ss_dssp             TTC-GGGC--GGGT--TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCH
T ss_pred             HHH-HhHH--HHHH--HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCH
Confidence            100 0000  0111  123899999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|||++++
T Consensus       160 ~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l  192 (267)
T 3r9t_A          160 KVAMRLLLTGEPLSAAAARDWGLINEVVEAGSV  192 (267)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEcChhHH
Confidence            999999999999999999999999999998864

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=6.2e-48  Score=308.04  Aligned_cols=183  Identities=26%  Similarity=0.411  Sum_probs=162.7

Q ss_pred             CcceEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc
Q 041986            7 SQIHVLVEE---RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR   83 (195)
Q Consensus         7 ~~~~v~~~~---~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~   83 (195)
                      .++.+.++.   .++|++|+||||++.|++|.+++.+|.++|+.++.|+++++|||||.|+.||+|.|++++.....   
T Consensus         2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---   78 (260)
T 1mj3_A            2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTF---   78 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCH---
T ss_pred             CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccc---
Confidence            456788888   88999999999999999999999999999999999999999999999999999999998643111   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-
Q 041986           84 VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-  162 (195)
Q Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-  162 (195)
                      .   ......+.+.+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| 
T Consensus        79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  155 (260)
T 1mj3_A           79 Q---DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK  155 (260)
T ss_dssp             H---HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred             h---HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence            0   111122223456778999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .++.+++++|++++|+||+++||||+|+|++++
T Consensus       156 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l  188 (260)
T 1mj3_A          156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL  188 (260)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTH
T ss_pred             HHHHHHHHcCCcCCHHHHHHcCCccEEeChHHH
Confidence            999999999999999999999999999998763

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.6e-47  Score=305.71  Aligned_cols=181  Identities=17%  Similarity=0.206  Sum_probs=164.9

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCceeccccchhHHHhhhcccHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN-GRSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~-g~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      ..+.++++++|++||||||+ .|++|.+++.+|.++|+.++.|+++++|||||. |+.||+|.|++++...    +....
T Consensus         5 v~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~----~~~~~   79 (260)
T 1sg4_A            5 VLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR----SPAHY   79 (260)
T ss_dssp             EEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSC----CHHHH
T ss_pred             EEEEEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhcc----CHHHH
Confidence            45778888999999999997 799999999999999999999999999999999 6999999999987532    11223


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEe--CCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT--EKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~--~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                      ..+.+.+.+++.++..+||||||+|||+|+|||++|+++||+||++  ++++|++||+++|++|++|++++++|++| .+
T Consensus        80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  159 (260)
T 1sg4_A           80 AGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRA  159 (260)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHH
Confidence            3445566788899999999999999999999999999999999999  89999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +.+++++|++++|+||+++||||+|+|+++
T Consensus       160 a~~llltg~~~~a~eA~~~GLv~~vv~~~~  189 (260)
T 1sg4_A          160 AERALQLGLLFPPAEALQVGIVDQVVPEEQ  189 (260)
T ss_dssp             HHHHHHHTCCBCHHHHHHHTSSSEEECGGG
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCCEecCHHH
Confidence            999999999999999999999999998765

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1.1e-47  Score=305.75  Aligned_cols=177  Identities=24%  Similarity=0.365  Sum_probs=160.2

Q ss_pred             ceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986            9 IHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus         9 ~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +.|.++++++|++||||||++.|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++..........   
T Consensus         7 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~---   83 (256)
T 3trr_A            7 DEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSER---   83 (256)
T ss_dssp             CSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETT---
T ss_pred             CceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhh---
Confidence            46999999999999999999999999999999999999999999999999999999999999999987532211110   


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHH
Q 041986           89 ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEY  167 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~  167 (195)
                      .    + .+ ..+ .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++.+
T Consensus        84 ~----~-~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  156 (256)
T 3trr_A           84 G----L-GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAME  156 (256)
T ss_dssp             E----E-TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHH
T ss_pred             h----h-hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHH
Confidence            0    0 12 233 899999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++++|++++|+||+++||||+|||++++
T Consensus       157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l  184 (256)
T 3trr_A          157 LALTGESFTAEDAAKYGFINRLVDDGQA  184 (256)
T ss_dssp             HHHHCCCEEHHHHGGGTCCSEEECTTCH
T ss_pred             HHHhCCCcCHHHHHHCCCeeEecChHHH
Confidence            9999999999999999999999998863

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=4.4e-46  Score=313.96  Aligned_cols=187  Identities=22%  Similarity=0.227  Sum_probs=160.0

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--------C-CceeccccchhHHH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN--------G-RSFCAGGDVVGAYR   77 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~--------g-~~F~~G~dl~~~~~   77 (195)
                      +++.|.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.        | +.||+|.|++++..
T Consensus       165 ~~~~v~~e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~  244 (440)
T 2np9_A          165 EMEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQ  244 (440)
T ss_dssp             ECSSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHT
T ss_pred             CCceEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhc
Confidence            34579999999999999999999999999999999999999999999999999995        6 79999999998764


Q ss_pred             hhhcccHHHHHHHHHHHHHHHHHH------------hhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccc
Q 041986           78 MLKEGRVEECKELFRTLYSFVYLV------------ATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLI  145 (195)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~~l------------~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~  145 (195)
                      ................+..++..+            ..+||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l  324 (440)
T 2np9_A          245 GGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE  324 (440)
T ss_dssp             TCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred             cCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence            321111000011112233444443            37999999999999999999999999999999999999999999


Q ss_pred             cccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          146 GFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       146 G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      |++|++| +++|+|++| .++++++++|++++|+||+++||||+|||+++
T Consensus       325 Gl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~e  373 (440)
T 2np9_A          325 GIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDE  373 (440)
T ss_dssp             CCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHH
T ss_pred             CcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHH
Confidence            9999887 689999999 99999999999999999999999999998764

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=7.4e-45  Score=309.86  Aligned_cols=185  Identities=16%  Similarity=0.154  Sum_probs=167.3

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEe-CCCceeccccch
Q 041986            6 SSQIHVLVEERANSRTVILNRPH----------VLNALNTSMVALLTKQYESWENN-SGVDFVVIKG-NGRSFCAGGDVV   73 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~----------~~N~~~~~~~~~l~~~l~~~~~~-~~~~~vvl~~-~g~~F~~G~dl~   73 (195)
                      ..++++.++++++|++|+||+|+          +.|++|.+++.+|.++++.++.| +++|+||||| .|+.||+|.|++
T Consensus        18 ~~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~   97 (556)
T 2w3p_A           18 SQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIF   97 (556)
T ss_dssp             GGCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHH
T ss_pred             CcCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHH
Confidence            35667999999999999999998          89999999999999999999998 9999999999 889999999999


Q ss_pred             hHHHhhhcccHHHHHHHHHHHHHHHHHH----hhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC--eEEecCccc-cc
Q 041986           74 GAYRMLKEGRVEECKELFRTLYSFVYLV----ATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK--TVFAMPEVL-IG  146 (195)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~--a~~~~pe~~-~G  146 (195)
                      ++.....    .....+.+.+++++.++    .++|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|
T Consensus        98 el~~~~~----~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LG  173 (556)
T 2w3p_A           98 MLGLSTH----AWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLG  173 (556)
T ss_dssp             HHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHS
T ss_pred             HHhhccc----HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccC
Confidence            8765322    11223344556677788    8999999999999999999999999999999999  999999999 99


Q ss_pred             ccCCCchhhHhh--hcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          147 FHPDVGSSYYLS--RLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       147 ~~p~~g~~~~l~--r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++|++|++++++  |++| ..+.+++++|++++|+||+++||||+|||+++
T Consensus       174 L~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~e  224 (556)
T 2w3p_A          174 VLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQ  224 (556)
T ss_dssp             SCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHH
T ss_pred             CCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhH
Confidence            999999999999  9999 99999999999999999999999999998754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=9.7e-44  Score=317.73  Aligned_cols=189  Identities=19%  Similarity=0.254  Sum_probs=169.1

Q ss_pred             CCCCCCCcceEEEE-EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-ceeccccchhHHH
Q 041986            1 MGLKQSSQIHVLVE-ERANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR-SFCAGGDVVGAYR   77 (195)
Q Consensus         1 m~~~~~~~~~v~~~-~~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~-~F~~G~dl~~~~~   77 (195)
                      |.++.   +.+.++ ++++|++||||+|+ +.|++|.+++.+|.++++.++.|+++++||||| |+ .||+|.|++++..
T Consensus         1 m~~~~---~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~   76 (715)
T 1wdk_A            1 MIYEG---KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVE   76 (715)
T ss_dssp             CCEEC---SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHH
T ss_pred             CCCCC---CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhh
Confidence            55533   468888 78999999999998 899999999999999999999999999999999 86 9999999998865


Q ss_pred             hhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHh
Q 041986           78 MLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYL  157 (195)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l  157 (195)
                      .... .......+.+..+++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|
T Consensus        77 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L  155 (715)
T 1wdk_A           77 NFKL-PDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRL  155 (715)
T ss_dssp             HTTS-CHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHH
T ss_pred             cccC-CHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHH
Confidence            3211 111223444567788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          158 SRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       158 ~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +|++| ..+.+++++|++++|+||+++||||+|||+++
T Consensus       156 ~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~  193 (715)
T 1wdk_A          156 PRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADK  193 (715)
T ss_dssp             HHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGG
T ss_pred             HHHhCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHH
Confidence            99999 89999999999999999999999999998765

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=4.7e-44  Score=319.30  Aligned_cols=173  Identities=27%  Similarity=0.408  Sum_probs=159.4

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      ..++.+|+|++||||||+ .|++|.+++.+|.+++++++.|+++++|||||.|+.||+|.|++++.......        
T Consensus        23 ~~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~~--------   93 (742)
T 3zwc_A           23 EYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGL--------   93 (742)
T ss_dssp             EEEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSCS--------
T ss_pred             eEEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChhH--------
Confidence            335668999999999997 79999999999999999999999999999999999999999999886433221        


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG  169 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~  169 (195)
                        ...++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..|.+|+
T Consensus        94 --~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~  171 (742)
T 3zwc_A           94 --ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLI  171 (742)
T ss_dssp             --HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHH
Confidence              2345778899999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++|++++|+||+++||||+|+|++.
T Consensus       172 ltG~~i~a~eA~~~GLv~~vv~~d~  196 (742)
T 3zwc_A          172 TSGKYLSADEALRLGILDAVVKSDP  196 (742)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEESSCH
T ss_pred             HcCCchhHHHHHHcCCccEecCchh
Confidence            9999999999999999999999764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=5.2e-43  Score=313.26  Aligned_cols=186  Identities=26%  Similarity=0.371  Sum_probs=157.8

Q ss_pred             CcceEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-ceeccccchhHHHhhhcccH
Q 041986            7 SQIHVLVE-ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR-SFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         7 ~~~~v~~~-~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~-~F~~G~dl~~~~~~~~~~~~   84 (195)
                      +++.+.++ ++++|++|||||| +.|++|.+++.+|.++++.++.|+++++||||| |+ .||+|.|++++....... .
T Consensus         5 ~~~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~-~   81 (725)
T 2wtb_A            5 TKGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGN-V   81 (725)
T ss_dssp             --CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             cCCeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchh-h
Confidence            44578898 7899999999999 799999999999999999999999999999999 85 999999999875421100 0


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      .....+.+..+++++++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~  161 (725)
T 2wtb_A           82 KEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLT  161 (725)
T ss_dssp             -CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHH
Confidence            000112234456677788999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .|.+++++|++++|+||+++||||+|||++++
T Consensus       162 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l  193 (725)
T 2wtb_A          162 KALEMILTSKPVKAEEGHSLGLIDAVVPPAEL  193 (725)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEECCTTTH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCccceEcChhHH
Confidence            99999999999999999999999999998763

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.90  E-value=1.7e-24  Score=190.02  Aligned_cols=160  Identities=19%  Similarity=0.151  Sum_probs=133.3

Q ss_pred             EeCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHH
Q 041986           15 ERANSRTVILNRPHVLNA--LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFR   92 (195)
Q Consensus        15 ~~~~v~~i~l~~p~~~N~--~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~   92 (195)
                      .+++|++|++|+|...|.  ++..+.++|.++|+.++.|+++|+|||+++    |.|+|+...                .
T Consensus       299 ~~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~----spGG~~~~~----------------~  358 (593)
T 3bf0_A          299 TGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTAS----------------E  358 (593)
T ss_dssp             CSCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEE----EEEECHHHH----------------H
T ss_pred             CCCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEec----CCCCCHHHH----------------H
Confidence            457899999999987787  688899999999999999999999999997    467777542                1


Q ss_pred             HHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcc------------cccccCCC---------
Q 041986           93 TLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEV------------LIGFHPDV---------  151 (195)
Q Consensus        93 ~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~------------~~G~~p~~---------  151 (195)
                      .+.+.++++..++||||++|+|.|.|||+.++++||++++++++.|+.+++            ++|+.|..         
T Consensus       359 ~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~  438 (593)
T 3bf0_A          359 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV  438 (593)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCC
T ss_pred             HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeeccccccc
Confidence            233455677789999999999999999999999999999999999999885            57876532         


Q ss_pred             ----chh---------------hHhhhcch-HH-----HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          152 ----GSS---------------YYLSRLPG-HL-----GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       152 ----g~~---------------~~l~r~~g-~~-----a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                          +.+               .++.+.++ .+     +.+++++|+.++|+||+++||||++++.++
T Consensus       439 ~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~  506 (593)
T 3bf0_A          439 SITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDD  506 (593)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHH
Confidence                222               45566666 55     788999999999999999999999997543

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.87  E-value=1.1e-21  Score=154.37  Aligned_cols=158  Identities=18%  Similarity=0.123  Sum_probs=117.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHH
Q 041986           16 RANSRTVILNRPHVLNALNTS-------MVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECK   88 (195)
Q Consensus        16 ~~~v~~i~l~~p~~~N~~~~~-------~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~   88 (195)
                      +++|+.|.++.+-..+.-...       .+.+|.++|+.++.|+++|+|||++.    |.|.|+....            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence            356888888866532210111       35789999999999999999999996    6788876421            


Q ss_pred             HHHHHHHHHHHHHhh-CCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC---------------------ccccc
Q 041986           89 ELFRTLYSFVYLVAT-YSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP---------------------EVLIG  146 (195)
Q Consensus        89 ~~~~~~~~l~~~l~~-~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p---------------------e~~~G  146 (195)
                          .+.+.++++.. ++||+||+++|.|.|+|+.|+++||++++++++.|+.+                     +.+.|
T Consensus        66 ----~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G  141 (240)
T 3rst_A           66 ----EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSG  141 (240)
T ss_dssp             ----HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESS
T ss_pred             ----HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecc
Confidence                22344555666 89999999999999999999999999999999999999                     44556


Q ss_pred             ccCCCchhh--------------------------HhhhcchHHHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986          147 FHPDVGSSY--------------------------YLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       147 ~~p~~g~~~--------------------------~l~r~~g~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      -.+..+..+                          ...|.+.....+.++.|+.+++++|+++||||++.+.+
T Consensus       142 ~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~  214 (240)
T 3rst_A          142 AHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYD  214 (240)
T ss_dssp             TTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHH
T ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHH
Confidence            555554221                          12233442223347899999999999999999998654

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.86  E-value=7.4e-21  Score=148.17  Aligned_cols=147  Identities=14%  Similarity=0.173  Sum_probs=122.5

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLY   95 (195)
Q Consensus        16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   95 (195)
                      .+.|++|++++     .++..+.++|.++|+.++. ++++.|+|+.+    |.|+++...                   .
T Consensus         7 ~~~V~vI~i~g-----~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~in----spGG~v~~~-------------------~   57 (230)
T 3viv_A            7 KNIVYVAQIKG-----QITSYTYDQFDRYITIAEQ-DNAEAIIIELD----TPGGRADAM-------------------M   57 (230)
T ss_dssp             CCEEEEEEEES-----CBCHHHHHHHHHHHHHHHH-TTCSEEEEEEE----BSCEEHHHH-------------------H
T ss_pred             CCeEEEEEEeC-----EECHHHHHHHHHHHHHHhc-CCCCEEEEEEe----CCCcCHHHH-------------------H
Confidence            45689999974     6899999999999999986 46999999986    778877532                   2


Q ss_pred             HHHHHHhhCCCcEEEEE---cchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchh---------------hHh
Q 041986           96 SFVYLVATYSKPHVAIM---DGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSS---------------YYL  157 (195)
Q Consensus        96 ~l~~~l~~~~~p~Iaav---~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~---------------~~l  157 (195)
                      .+.+.+..+|||||++|   +|.|.|+|+.++++||++++.+++.|+.+++..+. |..|.+               ..+
T Consensus        58 ~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~l  136 (230)
T 3viv_A           58 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSL  136 (230)
T ss_dssp             HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence            35667778999999999   99999999999999999999999999999987533 444442               135


Q ss_pred             hhcch---HHHHHHhhcCCCCCHHHHHhcCccccccCC
Q 041986          158 SRLPG---HLGEYLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       158 ~r~~g---~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      ++..|   ..+.+++..++.++|+||+++||||+|+++
T Consensus       137 a~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          137 AQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             HHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             HHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            66666   368899999999999999999999999875

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.74  E-value=2.6e-17  Score=127.55  Aligned_cols=138  Identities=14%  Similarity=0.088  Sum_probs=109.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++..+.+++.+.|..++.+++.+.|+|.-    .|.|+++..                   ...+.+.+..+++|+++.+
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~a-------------------g~~I~~~i~~~~~pV~t~v  110 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSA-------------------GLAIVDTMNFIKADVQTIV  110 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            78899999999999999887788888886    477776642                   1224556677899999999


Q ss_pred             cchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCch------------------hhHhhhcch-H--HHHHHh
Q 041986          113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGS------------------SYYLSRLPG-H--LGEYLG  169 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~------------------~~~l~r~~g-~--~a~~l~  169 (195)
                      +|.|.++|+.++++||.  |++.+++.|++++.. |..|..|.                  ...+++..| .  .+.+++
T Consensus       111 ~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~  189 (218)
T 1y7o_A          111 MGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADA  189 (218)
T ss_dssp             EEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             ccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999  999999999999987 33332332                  244666666 3  577888


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ..++.++|+||+++||||+|+++++
T Consensus       190 ~~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          190 ERDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             HSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             hCCCEEcHHHHHHCCCCcEEcCcCC
Confidence            8999999999999999999998765

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.65  E-value=3.4e-16  Score=126.61  Aligned_cols=142  Identities=12%  Similarity=0.125  Sum_probs=111.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..|+++..+..++.++++.+.++ .+.+|+|++.|     |.++.+....        .    ....+++
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~--------l----~~~~~i~  181 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS--------L----MQMAKTS  181 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH--------H----HHHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH--------H----HHHHHHH
Confidence            445555555578999999999999999999987 89999999955     8888653310        1    1223344


Q ss_pred             HHH---hhCCCcEEEEEcchhcchh-hHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCC
Q 041986           99 YLV---ATYSKPHVAIMDGITMGGG-AGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGAT  174 (195)
Q Consensus        99 ~~l---~~~~~p~Iaav~G~~~g~G-~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~  174 (195)
                      ..+   ...++|+|++|+|+|.||| +.++++||++++.++++|++.           +...+.+.+|..     ++++.
T Consensus       182 ~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-----l~~~~  245 (304)
T 2f9y_B          182 AALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-----LPPGF  245 (304)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-----CCTTT
T ss_pred             HHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-----CCccc
Confidence            444   4569999999999999999 788999999999999999997           455556666621     46888


Q ss_pred             CCHHHHHhcCccccccCCCC
Q 041986          175 LSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       175 ~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+|+++.++|+||.|+++++
T Consensus       246 ~~Ae~~~~~Glvd~Vv~~~e  265 (304)
T 2f9y_B          246 QRSEFLIEKGAIDMIVRRPE  265 (304)
T ss_dssp             TBHHHHGGGTCCSEECCHHH
T ss_pred             CCHHHHHhcCCccEEeCcHH
Confidence            99999999999999998653

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.63  E-value=2e-15  Score=123.20  Aligned_cols=152  Identities=12%  Similarity=0.081  Sum_probs=111.1

Q ss_pred             eCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986           16 RANSRTVILNRPH---------VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus        16 ~~~v~~i~l~~p~---------~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      +|.-..|.-|++.         ..+++++.......+.++.++.. ++-+|.+.-.++.+. |...+.            
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~-~~PlI~lvdt~Ga~~-g~~ae~------------  180 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKF-NRPIFTFIDTKGAYP-GKAAEE------------  180 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-CHHHHH------------
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCc-chhhhh------------
Confidence            4444455555654         34789999999999999988865 466666665433222 221111            


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                       ......+..++.++..+++|+|++|+|+|.|||+.++++||++++.+++.|++      +.|.+++..++.+..+ ..+
T Consensus       181 -~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A  253 (327)
T 2f9i_A          181 -RGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIA  253 (327)
T ss_dssp             -TTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHH
T ss_pred             -hhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHH
Confidence             12233555677788999999999999999999999999999999999999886      3455555555555555 566


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      .++    +.++|++|+++|+||+|+|.
T Consensus       254 ~e~----~~itA~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          254 AET----MKITAHDIKQLGIIDDVISE  276 (327)
T ss_dssp             HHH----HTCBHHHHHHTTSSSEEECC
T ss_pred             HHH----cCCCHHHHHHcCCceEEecC
Confidence            665    78999999999999999984

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.61  E-value=4.2e-15  Score=121.68  Aligned_cols=138  Identities=9%  Similarity=-0.014  Sum_probs=107.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      .+++++.......+.++.++.. ++-+|.|.-.++.+. |...+.             ......+..++..+..+++|+|
T Consensus       152 ~G~~~~~~~~Ka~r~~~~A~~~-~lPlI~lvDt~Ga~~-g~~aE~-------------~g~~~~~a~~l~al~~~~vPvI  216 (339)
T 2f9y_A          152 FGMPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYP-GVGAEE-------------RGQSEAIARNLREMSRLGVPVV  216 (339)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-SHHHHH-------------TTHHHHHHHHHHHHHTCSSCEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCcc-chHHHH-------------HHHHHHHHHHHHHHHhCCCCEE
Confidence            4789999999999999988764 466776666433222 221111             1223455567778899999999


Q ss_pred             EEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCcccc
Q 041986          110 AIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATH  188 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~  188 (195)
                      ++|+|+|.|||+.++++||++++.++++|++      +.|.+++++++.+..+ ..+.++    +.++|++|+++|+||+
T Consensus       217 avV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~  286 (339)
T 2f9y_A          217 CTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDS  286 (339)
T ss_dssp             EEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSC
T ss_pred             EEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeE
Confidence            9999999999999999999999999999997      3566677777777766 677776    6799999999999999


Q ss_pred             ccCC
Q 041986          189 YSLS  192 (195)
Q Consensus       189 vv~~  192 (195)
                      |+|.
T Consensus       287 VV~e  290 (339)
T 2f9y_A          287 IIPE  290 (339)
T ss_dssp             CCCC
T ss_pred             EecC
Confidence            9984

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.29  E-value=3.1e-11  Score=92.65  Aligned_cols=135  Identities=16%  Similarity=0.103  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++....+.+.+.|..++.+++.+.|+|.-+    |.|++...                   ...+.+.+..+++|+++.+
T Consensus        36 I~~~~a~~i~~~L~~~~~~~~~k~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~v   92 (208)
T 2cby_A           36 VNDEIANRLCAQILLLAAEDASKDISLYIN----SPGGSISA-------------------GMAIYDTMVLAPCDIATYA   92 (208)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHCSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            678899999999999987777788777764    66666532                   2235556777899999999


Q ss_pred             cchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchh------------------hHhhhcch-H--HHHHHh
Q 041986          113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSS------------------YYLSRLPG-H--LGEYLG  169 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~------------------~~l~r~~g-~--~a~~l~  169 (195)
                      .|.|.++|+.++++||.  |++.+++.++..+..-|.   .|-.                  ..+.+..| .  ...+++
T Consensus        93 ~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~  169 (208)
T 2cby_A           93 MGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS  169 (208)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             CcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            99999999999999998  999999999987764321   1110                  11233333 2  245577


Q ss_pred             hcCCCCCHHHHHhcCccccccCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      ..++.++++||++.||||++.+..
T Consensus       170 ~~~~~~ta~eA~e~GLvD~i~~~~  193 (208)
T 2cby_A          170 DRDRWFTAAEALEYGFVDHIITRA  193 (208)
T ss_dssp             HTTCEEEHHHHHHHTSCSEECSCC
T ss_pred             hCCcEEcHHHHHHcCCCcEecCch
Confidence            889999999999999999998653

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=99.04  E-value=7.2e-09  Score=79.03  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=98.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++....+.+.+.|..++.++..+.|+|.-+    |.|+++..                   ...+.+.+...++|+++.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~~-------------------~~~I~~~i~~~~~~V~t~   91 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVTA-------------------GFAIYDTIQHIKPDVQTI   91 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHHH-------------------HHHHHHHHHHhcCCcEEE
Confidence            4788999999999999987766777766664    66666532                   223455667789999999


Q ss_pred             EcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchh-h-----------------Hhhhcch---HHHHHH
Q 041986          112 MDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSS-Y-----------------YLSRLPG---HLGEYL  168 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~-~-----------------~l~r~~g---~~a~~l  168 (195)
                      +.|.|.++|..++++||  .|++.+++.+.+....-|.   .|-. -                 .+.+.-|   ....++
T Consensus        92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~  168 (203)
T 3qwd_A           92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA---QGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKD  168 (203)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSST---TTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999  6999999999987654321   1111 0                 0111222   223445


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      +-....++|+||++.||+|+|+++.
T Consensus       169 ~~~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          169 TDRDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             HTSCCCEEHHHHHHHTSCSEECCCC
T ss_pred             hhcCceecHHHHHHcCCcCEecCCc
Confidence            5556679999999999999999764

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=99.04  E-value=1.5e-09  Score=82.32  Aligned_cols=135  Identities=17%  Similarity=0.113  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++....+.+.+.|..++.+++.+.|+|.=+    |.|+++..                   ...+.+.+...++|+++.+
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~v   91 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVITA-------------------GMSIYDTMQFIKPDVSTIC   91 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            688899999999999987766788877765    66766642                   1234556677889999999


Q ss_pred             cchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchh-h-----------------Hhhhcch---HHHHHHh
Q 041986          113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSS-Y-----------------YLSRLPG---HLGEYLG  169 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~-~-----------------~l~r~~g---~~a~~l~  169 (195)
                      .|.|..+|..++++||.  |++.+++.++......|..   |-. .                 .+.+..|   ....+++
T Consensus        92 ~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~  168 (193)
T 1yg6_A           92 MGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT  168 (193)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             eeeHHHHHHHHHHCCCcCcEEEecCcEEEEEecccccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            99999999999999999  9999999998866543321   110 0                 0112222   1223343


Q ss_pred             hcCCCCCHHHHHhcCccccccCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      -.+..++++||++.||||++.++.
T Consensus       169 ~~~~~~ta~eA~~~GliD~i~~~~  192 (193)
T 1yg6_A          169 ERDRFLSAPEAVEYGLVDSILTHR  192 (193)
T ss_dssp             SSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             cCCeEEcHHHHHHcCCCCEecCCC
Confidence            345567999999999999998763

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=99.03  E-value=2.9e-09  Score=81.98  Aligned_cols=137  Identities=15%  Similarity=0.067  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++......+.+.|..++.++. +.|+|.-+    |.|+++..                   ...+.+.+...++|+++.+
T Consensus        48 I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~a-------------------~~~I~~~i~~~~~pV~t~v  103 (215)
T 2f6i_A           48 INKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSINE-------------------GLAILDIFNYIKSDIQTIS  103 (215)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            678888999999998876655 77777765    66666542                   1235556677889999999


Q ss_pred             cchhcchhhHHhhhcCE--EEEeCCeEEecCccccccc---CCCchh----h--------Hhhhcch---HHHHHHhhcC
Q 041986          113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFH---PDVGSS----Y--------YLSRLPG---HLGEYLGLTG  172 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~---p~~g~~----~--------~l~r~~g---~~a~~l~l~g  172 (195)
                      .|.|..+|..++++||.  +++.+.+.+.+.....|..   .+....    .        .+.+..|   ....+++-.+
T Consensus       104 ~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~  183 (215)
T 2f6i_A          104 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRD  183 (215)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred             eeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCC
Confidence            99999999999999999  9999999998866543321   010000    0        0111112   2233344444


Q ss_pred             CCCCHHHHHhcCccccccCCC
Q 041986          173 ATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       173 ~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      ..++++||++.||||++.++.
T Consensus       184 ~~lta~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          184 YYMNALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             CEECHHHHHHHTSCSEECCCS
T ss_pred             eecCHHHHHHCCCCCEecCCc
Confidence            557999999999999998653

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.90  E-value=1.3e-08  Score=80.78  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=95.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++....+.+.+.|..++.++..+.|+|.-+    |.|+++..                   ...+.+.+...++|+++.+
T Consensus        91 I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~a-------------------g~aIyd~I~~~k~pV~t~v  147 (277)
T 1tg6_A           91 IDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVTA-------------------GLAIYDTMQYILNPICTWC  147 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSCSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEEE
Confidence            688889999999998876555788877765    66666642                   1234456667889999999


Q ss_pred             cchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchh-h-----------------Hhhhcch---HHHHHHh
Q 041986          113 DGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSS-Y-----------------YLSRLPG---HLGEYLG  169 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~-~-----------------~l~r~~g---~~a~~l~  169 (195)
                      .|.|..+|..++++||.  |++.+++.+.......|.   .|.. -                 .+.+.-|   ....+++
T Consensus       148 ~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~---~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~  224 (277)
T 1tg6_A          148 VGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA---RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM  224 (277)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             ccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999998  999999998876654322   1111 0                 0111112   1233344


Q ss_pred             hcCCCCCHHHHHhcCccccccCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      -.+..++++||++.||||++....
T Consensus       225 drd~~lta~EAle~GLID~I~~~~  248 (277)
T 1tg6_A          225 ERDRYMSPMEAQEFGILDKVLVHP  248 (277)
T ss_dssp             SSCEEECHHHHHHHTSCSEECSSC
T ss_pred             hcCcccCHHHHHHCCCCCEecCcc
Confidence            445667999999999999998653

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.90  E-value=1.1e-08  Score=77.79  Aligned_cols=135  Identities=17%  Similarity=0.094  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAI  111 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaa  111 (195)
                      .++....+.+.+.|..++.++..+.|+|.-+    |.|+++..                   ...+.+.+...++|+++.
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~-------------------~~~I~~~i~~~~~~v~t~   94 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVTA-------------------GMGVYDTMQFIKPDVSTI   94 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHHhCCCeEEE
Confidence            3688999999999999987666777776665    66666542                   223555667789999999


Q ss_pred             EcchhcchhhHHhhhcCE--EEEeCCeEEecCcccccccCCCchhh------------------Hhhhcch---HHHHHH
Q 041986          112 MDGITMGGGAGIAVHASY--RLATEKTVFAMPEVLIGFHPDVGSSY------------------YLSRLPG---HLGEYL  168 (195)
Q Consensus       112 v~G~~~g~G~~l~l~~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~------------------~l~r~~g---~~a~~l  168 (195)
                      +.|.|.++|..+++++|.  |++.+++.+.+....-+.   .|-..                  .+.+.-|   ....++
T Consensus        95 ~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~  171 (201)
T 3p2l_A           95 CIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKD  171 (201)
T ss_dssp             EEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999998  999999999887664321   11111                  0111112   122333


Q ss_pred             hhcCCCCCHHHHHhcCccccccCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      +-....++|+||++.||||+|+++
T Consensus       172 ~~~~~~lta~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          172 TDRDNFMMADEAKAYGLIDHVIES  195 (201)
T ss_dssp             TSSCEEEEHHHHHHHTSCSEECCC
T ss_pred             hhcCeeecHHHHHHcCCccEecCC
Confidence            333445799999999999999976

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.57  E-value=1e-06  Score=66.99  Aligned_cols=141  Identities=13%  Similarity=0.085  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCceec-c---ccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCC
Q 041986           32 ALNTSMVALLTKQYESWENNSGVDFV--VIKGNGRSFCA-G---GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYS  105 (195)
Q Consensus        32 ~~~~~~~~~l~~~l~~~~~~~~~~~v--vl~~~g~~F~~-G---~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  105 (195)
                      .++.++...+...|..++.++..+-|  .|-+.|..-.. |   +++.                   ....+.+.+...+
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~-------------------aglaIyd~m~~~~   96 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT-------------------DVISIVDVINYIS   96 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHH-------------------HHHHHHHHHHHSS
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHH-------------------HHHHHHHHHHhcC
Confidence            37899999999999998754433433  33333311000 0   3332                   2234556777889


Q ss_pred             CcEEEEEcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchh-h-----------------Hhhhcch---
Q 041986          106 KPHVAIMDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSS-Y-----------------YLSRLPG---  162 (195)
Q Consensus       106 ~p~Iaav~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~-~-----------------~l~r~~g---  162 (195)
                      .|+...+-|.|.+.|..+++++|  .|++.+++++.+..+..|..  .|.+ -                 .+.+.-|   
T Consensus        97 ~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~--~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~  174 (205)
T 4gm2_A           97 SDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIP--FNQATNIEIQNKEIMNTKKKVIEIISKNTEKDT  174 (205)
T ss_dssp             SCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCC--SSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred             CCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCccccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            99999999999999999999999  59999999998876654431  1111 1                 0111111   


Q ss_pred             HHHHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986          163 HLGEYLGLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       163 ~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      ....+.+-....++|+||++.||||+|+++|
T Consensus       175 e~I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          175 NVISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence            1123334445569999999999999999865

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.55  E-value=6e-06  Score=70.99  Aligned_cols=174  Identities=17%  Similarity=0.120  Sum_probs=127.4

Q ss_pred             EEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCceeccccchhHH
Q 041986           11 VLVEERANSRTVILNRPHVL-------------NALNTSMVALLTKQYESWE-NNSGVDFVVIKGNGRSFCAGGDVVGAY   76 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~-------------N~~~~~~~~~l~~~l~~~~-~~~~~~~vvl~~~g~~F~~G~dl~~~~   76 (195)
                      ..+++..+++.++...|...             +.+...+..||.+++-.+. ++.++...++...|+.       ....
T Consensus       270 ~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~-------~~~~  342 (556)
T 2w3p_A          270 VTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA-------RHLL  342 (556)
T ss_dssp             EEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH-------HHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH-------HHHh
Confidence            44556668888888877631             3444668889988887775 5678999998887744       2222


Q ss_pred             Hhh-----hcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEc-chhcchh-hHHhhhcCEEEEeC-------CeEEecCc
Q 041986           77 RML-----KEGRVEECKELFRTLYSFVYLVATYSKPHVAIMD-GITMGGG-AGIAVHASYRLATE-------KTVFAMPE  142 (195)
Q Consensus        77 ~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~-G~~~g~G-~~l~l~~D~~ia~~-------~a~~~~pe  142 (195)
                      ...     ..+.+ ...+....+++.+.++-....-+++.|. |+|+.|- +||+++||..++-+       ...+.+.+
T Consensus       343 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (556)
T 2w3p_A          343 AADASLMQHKDHW-FVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSE  421 (556)
T ss_dssp             HHHHHHHHTTTSH-HHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCG
T ss_pred             hhHHHHHhccchH-HHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeec
Confidence            111     11111 3345666777888888889999999996 9998775 69999999999852       48999999


Q ss_pred             ccccccCCCchhhHhhhcch--HHHH--HHhhcCCCCCHHHHHhcCccccccCC
Q 041986          143 VLIGFHPDVGSSYYLSRLPG--HLGE--YLGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       143 ~~~G~~p~~g~~~~l~r~~g--~~a~--~l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      .++|..|..-+..+|++..-  ....  --...|+++++++|.++|||....++
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (556)
T 2w3p_A          422 VNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDD  475 (556)
T ss_dssp             GGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCT
T ss_pred             cccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCccc
Confidence            99999999888888887643  2221  12456999999999999999877654

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=98.46  E-value=6.3e-07  Score=78.16  Aligned_cols=156  Identities=10%  Similarity=0.037  Sum_probs=104.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhc-ccHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE-GRVEECKELFRTLYSF   97 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~-~~~~~~~~~~~~~~~l   97 (195)
                      |..+..+..-..-++.+...+.+.++++.+... .+-+|.|.-     |+|..+.+-...... ...   .+.    ..-
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~d-----SgGArlqe~~~~l~~~~~~---g~i----~~~  173 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYPNRRGG---GTP----FFR  173 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSSSTTST---THH----HHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEe-----CCCCCccccchhccccccH---HHH----HHH
Confidence            444444444466789999999999999999875 477777776     566666543322110 000   111    122


Q ss_pred             HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcch-HHHHHHh-hcCCC
Q 041986           98 VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG-LTGAT  174 (195)
Q Consensus        98 ~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~-l~g~~  174 (195)
                      ..++....+|+|+++.|+|.|||... ..||+++++++ +.+++....  ++    -...-.-.++ ..+.+++ .+|+.
T Consensus       174 ~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi----~~~~~~~~~d~~~A~el~~~tge~  246 (587)
T 1pix_A          174 NAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IM----GGMNPKGHVDLEYANEIADMVDRT  246 (587)
T ss_dssp             HHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TC----CSCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HH----hhhccccccchhHHHHHHHHhCCc
Confidence            34566889999999999999999999 99999988774 888873221  01    0000112356 7888888 88888


Q ss_pred             CCHHH-----HH--hcCccccccCCCC
Q 041986          175 LSGEE-----ML--FCGLATHYSLSAV  194 (195)
Q Consensus       175 ~~a~e-----a~--~~Glv~~vv~~~~  194 (195)
                      +++++     .+  +.|++|.++++++
T Consensus       247 v~~e~lgga~~h~~~~GvvD~vv~~e~  273 (587)
T 1pix_A          247 GKTEPPGAVDIHYTETGFMREVYASEE  273 (587)
T ss_dssp             CCCCCSSBHHHHTTTSCCSCEEESSHH
T ss_pred             cChhhcccHHHHHhhcCceeEecCCHH
Confidence            77554     33  5899999998753

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.43  E-value=6.8e-07  Score=78.43  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeCCCceecc-ccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcch
Q 041986           37 MVALLTKQYESWENNSGVDFVVIKGNGRSFCAG-GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGI  115 (195)
Q Consensus        37 ~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G-~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~  115 (195)
                      ...++.+.|+.++.|+.++.|+|.-+    |.| +++....                .+.+.++.+....|||||.+++ 
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~~----------------~I~~~i~~~k~~gkpvva~~~~-  129 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSMQ----------------YIGKALKEFRDSGKPVYAVGEN-  129 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHHH----------------HHHHHHHHHHHTTCCEEEEESC-
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHHH----------------HHHHHHHHHHhcCCeEEEEEcc-
Confidence            46778899999999999999999986    555 6665422                2333444455568999999876 


Q ss_pred             hcchhhHHhhhcCEEEEeCCeEEecCccc
Q 041986          116 TMGGGAGIAVHASYRLATEKTVFAMPEVL  144 (195)
Q Consensus       116 ~~g~G~~l~l~~D~~ia~~~a~~~~pe~~  144 (195)
                      +..+|+.|+.+||.+++.+.+.++...+.
T Consensus       130 aas~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          130 YSQGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             EEHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             chhHHHHHHHhCCEEEECCCceEEEeccc
Confidence            56778999999999999999988886654

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.21  E-value=6.5e-05  Score=59.97  Aligned_cols=145  Identities=9%  Similarity=0.079  Sum_probs=93.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-+++....+.+.++++.+.+. .+-+|.+...|     |.-+.+   ..     .. ......+...+
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsg-----Gar~qE---Gi-----~s-l~q~aki~~~l  187 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASG-----GARMQE---GI-----IS-LMQMGKTSVSL  187 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-----SCCGGG---HH-----HH-HHHHHHHHHHH
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC-----Ccchhh---hh-----hh-HhHHHHHHHHH
Confidence            444444333356789999999999999998874 57888887744     332222   00     00 11122334455


Q ss_pred             HHHhhCCCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                      .++....+|.|+.+.|++.||+. .+++.+|++++.+++.+++-..+.       ....+-+.+.   .      .--+|
T Consensus       188 ~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~v-------i~~~~~~~~~---e------~~~~A  251 (285)
T 2f9i_B          188 KRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRV-------IEQTINEKLP---D------DFQTA  251 (285)
T ss_dssp             HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHH-------HHHHHTSCCC---T------TTTBH
T ss_pred             HHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHH-------HHHHhcccch---H------hHhhH
Confidence            66778899999999999999985 447899999999998887743221       1111111111   0      01147


Q ss_pred             HHHHhcCccccccCCCC
Q 041986          178 EEMLFCGLATHYSLSAV  194 (195)
Q Consensus       178 ~ea~~~Glv~~vv~~~~  194 (195)
                      +.+.+.|++|.|+++++
T Consensus       252 e~~~~~G~iD~Iv~~~e  268 (285)
T 2f9i_B          252 EFLLEHGQLDKVVHRND  268 (285)
T ss_dssp             HHHHHTTCCSEECCGGG
T ss_pred             HHHHhcCCccEEeChHH
Confidence            77889999999998764

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=98.20  E-value=3.3e-05  Score=66.55  Aligned_cols=138  Identities=11%  Similarity=0.094  Sum_probs=94.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-++.....+.+.++++.+.+. .+-+|.+.-     |.|..+.+-..        .+..+.+.+....
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~d-----SGGARmqeg~~--------sl~~~~~i~~~~~  172 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQN-GAPVIGIND-----SGGARIQEGVD--------SLAGYGEVFQRNI  172 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCCBCGGGTHH--------HHHHHHHHHHHHH
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHc-CCCEEEEeC-----CCccccCcccc--------hhhhHHHHHHHHH
Confidence            334444444467899999999999999999874 477887777     45555543111        1112222222222


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                       ++ .-.+|+|+++.|+|.||+.....+||++|+.++ +.+.+.                    |....+ ..+|+.+++
T Consensus       173 -~~-s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~-~~~ge~v~~  229 (531)
T 3n6r_B          173 -MA-SGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVK-TVTNEQVSA  229 (531)
T ss_dssp             -HT-TTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH-HHHCCCCCH
T ss_pred             -HH-hCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHH-HHhCCccCh
Confidence             12 246999999999999999888888999999985 776653                    111112 147899999


Q ss_pred             HHH-------HhcCccccccCCC
Q 041986          178 EEM-------LFCGLATHYSLSA  193 (195)
Q Consensus       178 ~ea-------~~~Glv~~vv~~~  193 (195)
                      ++.       .+.|++|.++++|
T Consensus       230 E~LGGa~~h~~~sG~~d~v~~~e  252 (531)
T 3n6r_B          230 EELGGATTHTRKSSVADAAFEND  252 (531)
T ss_dssp             HHHHBHHHHHHTTSCCSEEESSH
T ss_pred             hhcchHHHHhhccCcceEEeCCH
Confidence            998       8899999999875

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=98.13  E-value=7.1e-05  Score=64.51  Aligned_cols=137  Identities=14%  Similarity=0.118  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986           20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY   99 (195)
Q Consensus        20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (195)
                      ..+..+..-..-++.....+.+.++++.+..+ .+-+|.|.-+     .|.-+.+-.        ..+..+.+.+..+. 
T Consensus       100 ~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dS-----gGaRmqEg~--------~~l~~~~~i~~~~~-  164 (530)
T 3iav_A          100 AVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDS-----GGARIQEGV--------ASLGAYGEIFRRNT-  164 (530)
T ss_dssp             EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CSBCGGGTH--------HHHHHHHHHHHHHH-
T ss_pred             EEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-----CCcchhhhh--------hhHHHHHHHHHHHH-
Confidence            33444433467899999999999999999875 5778888774     444443311        11112222222222 


Q ss_pred             HHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHH
Q 041986          100 LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGE  178 (195)
Q Consensus       100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~  178 (195)
                      ++.. .+|+|+.+.|+|.||+.....+||++|++++ +.+.+.                    |....+ ..+|+.++++
T Consensus       165 ~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~-~~~ge~v~~e  222 (530)
T 3iav_A          165 HASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK-TVTGEDVGFE  222 (530)
T ss_dssp             HTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH-HHHCCCCCHH
T ss_pred             HHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH-HHhCCcCChh
Confidence            2333 4999999999999999988889999999875 888774                    211111 1478888888


Q ss_pred             HH-------HhcCccccccCCC
Q 041986          179 EM-------LFCGLATHYSLSA  193 (195)
Q Consensus       179 ea-------~~~Glv~~vv~~~  193 (195)
                      +.       ...|++|.++++|
T Consensus       223 ~LGGa~~h~~~sGv~d~va~de  244 (530)
T 3iav_A          223 ELGGARTHNSTSGVAHHMAGDE  244 (530)
T ss_dssp             HHHBHHHHHHTSCCCSEEESSH
T ss_pred             hcchHHHHHhccCceeEEecCh
Confidence            76       5799999999875

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=98.04  E-value=0.00018  Score=62.05  Aligned_cols=138  Identities=12%  Similarity=0.141  Sum_probs=94.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-++....-+.+.++++.+..+ .+-+|.+..     |+|..+.+-...        +..+.+.+..+.
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~s--------l~~~~~i~~~~~  162 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS--------LSGYGKMFFANV  162 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH--------HHHHHHHHHHHH
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHHH--------HHHHHHHHHHHH
Confidence            344444444467899999999999999999874 577888887     666666543221        112222222332


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGE  178 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~  178 (195)
                       ++ .-.+|.|+.+.|+|.||+......||++|+.+++.+++...               +     ..+. .+|+.++.+
T Consensus       163 -~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~aGP---------------~-----vI~~-~~ge~~~~e  219 (523)
T 1on3_A          163 -KL-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP---------------Q-----VIKS-VTGEDVTAD  219 (523)
T ss_dssp             -HH-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH---------------H-----HHHH-HHCCCCCHH
T ss_pred             -Hh-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEecCH---------------H-----HHHH-HhCCcCChH
Confidence             22 44599999999999999998889999999999988877621               1     1111 357777753


Q ss_pred             -----HHH--hcCccccccCCC
Q 041986          179 -----EML--FCGLATHYSLSA  193 (195)
Q Consensus       179 -----ea~--~~Glv~~vv~~~  193 (195)
                           |.+  +.|++|.+++++
T Consensus       220 ~lggae~h~~~~G~vd~vv~d~  241 (523)
T 1on3_A          220 ELGGAEAHMAISGNIHFVAEDD  241 (523)
T ss_dssp             HHHSHHHHHHTTCCCSEEESSH
T ss_pred             hcccHHHHhhccCceEEEeCCH
Confidence                 333  589999999864

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.96  E-value=0.00024  Score=61.58  Aligned_cols=138  Identities=13%  Similarity=0.075  Sum_probs=92.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-++.....+.+.++++.+.++ .+-+|.|..     |+|..+.+-...        +..+.+.+..+.
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~~s--------l~~~~~i~~~~~  175 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVVS--------LGLYSRIFRNNI  175 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTTHH--------HHHHHHHHHHHH
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHHHH--------HHHHHHHHHHHH
Confidence            334444443367799999999999999999874 577888887     556666542211        112222222222


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                       ++ .-.+|.|+.+.|+|.||+......||++|+.++ +.+.+...                    ...+. .+|+.++.
T Consensus       176 -~~-s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~aGP--------------------~vI~~-~~ge~v~~  232 (548)
T 2bzr_A          176 -LA-SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGP--------------------DVIKT-VTGEEVTM  232 (548)
T ss_dssp             -HT-TTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESSCH--------------------HHHHH-HHCCCCCH
T ss_pred             -Hh-cCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEeccH--------------------HHHHH-HhCCcCCh
Confidence             12 345999999999999999888889999999987 88777521                    11111 35777775


Q ss_pred             H-----HHH--hcCccccccCCC
Q 041986          178 E-----EML--FCGLATHYSLSA  193 (195)
Q Consensus       178 ~-----ea~--~~Glv~~vv~~~  193 (195)
                      +     |.+  +.|++|.+++++
T Consensus       233 e~lggae~h~~~sG~~d~vv~d~  255 (548)
T 2bzr_A          233 EELGGAHTHMAKSGTAHYAASGE  255 (548)
T ss_dssp             HHHHBHHHHHHTSSCCSEEESSH
T ss_pred             HhcccHHHHhhccCceeEEeCCH
Confidence            3     333  589999999864

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.95  E-value=0.00029  Score=60.76  Aligned_cols=138  Identities=13%  Similarity=0.086  Sum_probs=92.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-++....-+.+.++++.+..+ .+-+|.+..     |+|..+.+-...        +..+.+.+..+.
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~s--------l~~~~~i~~~~~  158 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGALS--------LEGYGAVFKMNV  158 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHHH--------HHHHHHHHHHHH
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHHH--------HHHHHHHHHHHH
Confidence            344444443367799999999999999999874 577888887     566666542211        112222222332


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-e-EEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCC
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-T-VFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLS  176 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a-~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~  176 (195)
                       ++ .-.+|.|+.+.|+|.||+......||++|+.++ + .+.+...                    ...+- .+|+.++
T Consensus       159 -~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~aGP--------------------~vI~~-~~ge~~~  215 (522)
T 1x0u_A          159 -MA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGP--------------------EITKV-VLGEEVS  215 (522)
T ss_dssp             -HH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESSCH--------------------HHHHH-TTCCCCC
T ss_pred             -Hh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEecCH--------------------HHHHH-HhCCcCC
Confidence             22 456999999999999999988899999999988 7 7766311                    11111 3677777


Q ss_pred             HH-----HHH--hcCccccccCCC
Q 041986          177 GE-----EML--FCGLATHYSLSA  193 (195)
Q Consensus       177 a~-----ea~--~~Glv~~vv~~~  193 (195)
                      .+     |.+  +.|++|.+++++
T Consensus       216 ~e~lggae~~~~~~G~~d~vv~~~  239 (522)
T 1x0u_A          216 FQDLGGAVVHATKSGVVHFMVDSE  239 (522)
T ss_dssp             HHHHHBHHHHHHTTCCCSEEESCH
T ss_pred             hhhcchHHHHhhcCceeEEEeCCH
Confidence            53     333  589999999864

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.88  E-value=0.00016  Score=62.59  Aligned_cols=142  Identities=15%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhc-ccHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKE-GRVEECKELFRTLYSF   97 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~-~~~~~~~~~~~~~~~l   97 (195)
                      |..+..+..-+.-++.+...+.+.++++.+.+. .+-+|.|.-+|+.     .+..-...... ...   .+.+.    -
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgGA-----Rl~~q~~~~~~~~~~---~~i~~----~  189 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGGA-----NLPRQDEVFPDREHF---GRIFF----N  189 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCCB-----CGGGGGGTSSSTTST---THHHH----H
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCCC-----CCCCcceeecccccH---HHHHH----H
Confidence            344444444467789999999999999999875 5778877774433     32110000000 000   01111    2


Q ss_pred             HHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeC-CeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCC
Q 041986           98 VYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATE-KTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLS  176 (195)
Q Consensus        98 ~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~-~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~  176 (195)
                      ..++....+|+|+.+.|+|.|||......||++++.+ ++.+.+.                    |....+. .+|+.++
T Consensus       190 ~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~a--------------------GP~vik~-~~ge~~~  248 (555)
T 3u9r_B          190 QANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLA--------------------GPPLVKA-ATGEVVS  248 (555)
T ss_dssp             HHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSS--------------------CHHHHHH-HHCCCCC
T ss_pred             HHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEc--------------------cHHHHHH-HhcCccC
Confidence            2245667899999999999999999999999988765 4544432                    1111221 5789999


Q ss_pred             HHHH-------HhcCccccccCCCC
Q 041986          177 GEEM-------LFCGLATHYSLSAV  194 (195)
Q Consensus       177 a~ea-------~~~Glv~~vv~~~~  194 (195)
                      +++.       .+.|++|.++++++
T Consensus       249 ~e~LGGa~~h~~~sGv~d~v~~de~  273 (555)
T 3u9r_B          249 AEELGGADVHCKVSGVADHYAEDDD  273 (555)
T ss_dssp             HHHHHBHHHHHHTTCSCSEEESSHH
T ss_pred             hhhccchhhhhhccCceeEEeCCHH
Confidence            9988       78999999998753

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.78  E-value=0.00064  Score=58.67  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=89.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-++.....+.+.++++.+... .+-+|.+.-     |+|.-+.+-...        +..+.+.+....
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~d-----SgGAR~qeg~~~--------l~g~~~~~~~~~  165 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGIND-----SGGARIQEGVDA--------LAGYGEIFLRNT  165 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH--------HHHHHHHHHHHH
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHc-CCCEEEEEC-----CCCCCccchhHH--------HHHHHHHHHHHH
Confidence            344444433367899999999999999999874 567777777     445444432111        112222233332


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                        ......|+|+.+.|+|.||+......||++|+.++ +.+.+.                    |....+. .+|+.++.
T Consensus       166 --~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a--------------------GP~vi~~-~~ge~v~~  222 (527)
T 1vrg_A          166 --LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIKA-VTGEEISQ  222 (527)
T ss_dssp             --HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH-HHCCCCCH
T ss_pred             --HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec--------------------CHHHHHH-HhCCCCCc
Confidence              22567999999999999999888889999999987 765542                    1111111 35666665


Q ss_pred             H-----HHH--hcCccccccCCC
Q 041986          178 E-----EML--FCGLATHYSLSA  193 (195)
Q Consensus       178 ~-----ea~--~~Glv~~vv~~~  193 (195)
                      +     +.+  +.|++|.+++++
T Consensus       223 e~lggae~~~~~~G~vd~vv~d~  245 (527)
T 1vrg_A          223 EDLGGAMVHNQKSGNAHFLADND  245 (527)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSH
T ss_pred             cccccHHHHhhcccceEEEecCH
Confidence            3     333  589999999864

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.68  E-value=0.0001  Score=63.51  Aligned_cols=151  Identities=13%  Similarity=0.048  Sum_probs=94.1

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHH
Q 041986           22 VILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL  100 (195)
Q Consensus        22 i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (195)
                      |.-|++. ..-+++++..+...+.++.+.. .++-+|.|.-.     .|..+..-         ++.....+...+++..
T Consensus       329 via~d~~~~gG~l~~~~~~K~ar~i~~a~~-~~~Plv~l~ds-----~G~~~G~~---------~E~~G~~~~~Ak~l~~  393 (522)
T 1x0u_A          329 IVANNPEEFGGSIDIDAADKAARFIRFCDA-FNIPLISLVDT-----PGYVPGTD---------QEYKGIIRHGAKMLYA  393 (522)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-----CCBCCSHH---------HHHTTHHHHHHHHHHH
T ss_pred             EEEECCCccCCCcCHHHHHHHHHHHHHHhh-CCCCEEEEecC-----CCCCCchH---------HHHHHHHHHHHHHHHH
Confidence            3334443 3468999999999999998875 56788877773     34433211         0111233355557778


Q ss_pred             HhhCCCcEEEEEcchhcchhhHHhhh----cCEEEEeCCeEEecCcccccccCCCchhhHhhhcc-hH-----HH-HHHh
Q 041986          101 VATYSKPHVAIMDGITMGGGAGIAVH----ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP-GH-----LG-EYLG  169 (195)
Q Consensus       101 l~~~~~p~Iaav~G~~~g~G~~l~l~----~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~-g~-----~a-~~l~  169 (195)
                      +....+|.|+.+-|++.|||+.....    +|++++.+++.+++-..       -|+...+-|.. ..     .. .++.
T Consensus       394 ~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~gp-------egaa~Il~r~~i~~~~d~~~~~~~l~  466 (522)
T 1x0u_A          394 FAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGP-------EGAVRILYRKEIQQASNPDDVLKQRI  466 (522)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSCH-------HHHHHHHTSSSSSSSSSSSSSSHHHH
T ss_pred             HHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecCH-------HHHHHHHhhhhhhcccCHHHHHHHHH
Confidence            88899999999999999998755544    99999988887776322       22222222211 00     00 0111


Q ss_pred             h--cCCCCCHHHHHhcCccccccCCCC
Q 041986          170 L--TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       170 l--~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      -  .-.--++..+.+.|+||.|+++.+
T Consensus       467 ~~y~~~~~~~~~~~~~G~iD~II~p~~  493 (522)
T 1x0u_A          467 AEYRKLFANPYWAAEKGLVDDVIEPKD  493 (522)
T ss_dssp             HHHHHHHSSSHHHHHTTSSSEECCGGG
T ss_pred             HHHHHhcCCHHHHHhcCCCcEeECHHH
Confidence            0  001145577999999999998754

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=97.26  E-value=0.0028  Score=55.29  Aligned_cols=159  Identities=11%  Similarity=0.033  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986           20 RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY   99 (195)
Q Consensus        20 ~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (195)
                      ..+..+..-+.-++.+...+.+.++++.+... .+-+|.|.-+|     |..+.+-........     .+.+ +..-..
T Consensus       109 ~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSg-----GArl~~qe~~~~~l~-----~~g~-if~~~~  176 (588)
T 3gf3_A          109 YIVASDNKKMAGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCS-----GVEFPNQDKVYPNRR-----GGGT-PFFRNS  176 (588)
T ss_dssp             EEEEECTTSGGGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCC-----CBCGGGHHHHSSSTT-----STTH-HHHHHH
T ss_pred             EEEEECCcccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----CcCcccccccccchh-----hHHH-HHHHHH
Confidence            33333333366788999999999999999864 47788777744     444421111000000     0011 111223


Q ss_pred             HHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccc--cccCCCchhhHhhhc---ch-HHHHHHhhcCC
Q 041986          100 LVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLI--GFHPDVGSSYYLSRL---PG-HLGEYLGLTGA  173 (195)
Q Consensus       100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~--G~~p~~g~~~~l~r~---~g-~~a~~l~l~g~  173 (195)
                      ++....+|+|+.+.|+|.|||...++++|++++.+++.+.+....+  |..|.+   ...+.-   +. ....+-..+-+
T Consensus       177 ~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g---~~~~~~~~~~~~~~~ge~~vs~e  253 (588)
T 3gf3_A          177 ELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG---YIDDEAAEQIIAAQIENSKLKVP  253 (588)
T ss_dssp             HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCC
T ss_pred             HHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc---cccccchhhhhhhhccccccChh
Confidence            4556789999999999999988668888888888899888854431  111110   000000   01 11111114666


Q ss_pred             CCCHHHHH--hcCccccccCCC
Q 041986          174 TLSGEEML--FCGLATHYSLSA  193 (195)
Q Consensus       174 ~~~a~ea~--~~Glv~~vv~~~  193 (195)
                      .+.+.+.+  ..|++|.++++|
T Consensus       254 eLGGa~~h~~~sGv~d~~a~de  275 (588)
T 3gf3_A          254 APGSVPIHYDETGFFREVYQND  275 (588)
T ss_dssp             CTTBHHHHTTTSCCSCEEESSH
T ss_pred             hccchhhhccccccceEEeCCH
Confidence            77777777  479999988775

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.19  E-value=0.0019  Score=55.69  Aligned_cols=157  Identities=14%  Similarity=0.115  Sum_probs=96.9

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +|.-.-|.=|+|. ..-.++++......+.++..+. .++-+|.|.-..+ |..|.+-+.             ....+..
T Consensus       330 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtpG-f~~G~~~E~-------------~gi~~~~  394 (530)
T 3iav_A          330 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDA-FNVPVLTFVDVPG-FLPGVDQEH-------------DGIIRRG  394 (530)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECC-BCCCHHHHH-------------TTHHHHH
T ss_pred             CCEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEeeCCC-CCccHHHHH-------------hhHHHHH
Confidence            3333334445554 2357899999988888877665 4577776665432 555554332             3555677


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhhHHhh----hcCEEEEeCCeEEecCcccccccCCCchhhHhhhc-ch-H----H
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGAGIAV----HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-PG-H----L  164 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l----~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-~g-~----~  164 (195)
                      .+++..+....+|+|+.|-|.+.|||+....    ..|++++.+++.++.       .++-++...+-|. +. .    .
T Consensus       395 Ak~l~a~a~a~vP~itvI~g~~~GGa~~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~  467 (530)
T 3iav_A          395 AKLIFAYAEATVPLITVITRKAFGGAYVVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAE  467 (530)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCH
T ss_pred             HHHHHHHHhCCCCEEEEEeCCcchHHHHHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHH
Confidence            7888899999999999999999987763332    268888877776654       3223333333221 11 1    0


Q ss_pred             --HHHHhh-cCC-CCCHHHHHhcCccccccCCCC
Q 041986          165 --GEYLGL-TGA-TLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 --a~~l~l-~g~-~~~a~ea~~~Glv~~vv~~~~  194 (195)
                        -.++.- .-+ --++..|.+.|++|.|+++.+
T Consensus       468 ~~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~  501 (530)
T 3iav_A          468 ATRARLIQEYEDALLNPYTAAERGYVDAVIMPSD  501 (530)
T ss_dssp             HHHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGG
T ss_pred             HHHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHH
Confidence              111111 111 136667789999999998754

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.16  E-value=0.0044  Score=53.47  Aligned_cols=152  Identities=11%  Similarity=0.044  Sum_probs=93.5

Q ss_pred             EEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986           21 TVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY   99 (195)
Q Consensus        21 ~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (195)
                      .|.=|+|. ..-+++++-.....+.++.++. .++-+|.|.-. +.|..|.+-+.             ....+.+.+++.
T Consensus       333 ~via~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDt-pG~~~G~~~E~-------------~g~~~~~A~~~~  397 (527)
T 1vrg_A          333 GIVANQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDT-PGYLPGVAQEH-------------GGIIRHGAKLLY  397 (527)
T ss_dssp             EEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHHH
T ss_pred             EEEEEcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecC-CCCcCchhhHH-------------hHHHHHHHHHHH
Confidence            33334443 3357999999999999987764 45666666552 22333333222             233345556777


Q ss_pred             HHhhCCCcEEEEEcchhcchhhHHhhh----cCEEEEeCCeEEecCcccccccCCCchhhHhhhcc------h-HHHHHH
Q 041986          100 LVATYSKPHVAIMDGITMGGGAGIAVH----ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP------G-HLGEYL  168 (195)
Q Consensus       100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~----~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~------g-~~a~~l  168 (195)
                      .+....+|+|+.+-|.+.|||+.-...    .|++++.+++.++       ..++-|++..+-|.-      . ....++
T Consensus       398 a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~  470 (527)
T 1vrg_A          398 AYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKL  470 (527)
T ss_dssp             HHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHH
T ss_pred             HHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHH
Confidence            888899999999999998887754433    7887777666655       443344444443321      0 111112


Q ss_pred             hh--cCCCCCHHHHHhcCccccccCCCC
Q 041986          169 GL--TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       169 ~l--~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .-  .-+--++..+.+.|+||+|+++.+
T Consensus       471 ~~~y~~~~~~p~~~~~~g~iD~II~p~~  498 (527)
T 1vrg_A          471 IEEYKQQFANPYIAASRGYVDMVIDPRE  498 (527)
T ss_dssp             HHHHHHHTSSHHHHHHTTSSSEECCGGG
T ss_pred             HHHHHHhhCCHHHHHHcCCCCeeeCHHH
Confidence            11  111256688999999999998653

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.07  E-value=0.0035  Score=54.33  Aligned_cols=151  Identities=13%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHH
Q 041986           22 VILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYL  100 (195)
Q Consensus        22 i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (195)
                      |.=|+|. ..-+++++-.....+.++.++. .++-.|.|--. ..|..|.+-+.             ....+...+++..
T Consensus       351 vian~~~~~~G~l~~~~a~Kaar~i~~a~~-~~iPlv~lvDt-~Gf~~G~~~E~-------------~Gi~~~ga~~l~a  415 (548)
T 2bzr_A          351 IVANQPTHFAGCLDINASEKAARFVRTCDC-FNIPIVMLVDV-PGFLPGTDQEY-------------NGIIRRGAKLLYA  415 (548)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHHHH
T ss_pred             EEEECCcccCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEeec-cCCCCChHHHH-------------hhHHHHHHHHHHH
Confidence            3334443 3457999999999998888865 45666666552 23444444332             2334456667778


Q ss_pred             HhhCCCcEEEEEcchhcchhhHHhh----hcCEEEEeCCeEEecCcccccccCCCchhhHhhhc-chH---------HH-
Q 041986          101 VATYSKPHVAIMDGITMGGGAGIAV----HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-PGH---------LG-  165 (195)
Q Consensus       101 l~~~~~p~Iaav~G~~~g~G~~l~l----~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-~g~---------~a-  165 (195)
                      +....+|+|+.|-|.+.|||+.-..    .+|++++.+++.++.       ..+-|+...+.|. ...         .. 
T Consensus       416 ~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V-------mgpegaa~Il~r~~~~~~~~~g~~~~~~~  488 (548)
T 2bzr_A          416 YGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDIDKLR  488 (548)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTCCC----------CHHHH
T ss_pred             HhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe-------cCHHHHHHHHhhhHHhhhhcccccHHHHH
Confidence            8889999999999999988775543    389888877776654       3333344333332 110         00 


Q ss_pred             HHHhh--cCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGL--TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l--~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .++.-  .-+--++..+.+.|+||.|+++.+
T Consensus       489 ~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~  519 (548)
T 2bzr_A          489 LRLQQEYEDTLVNPYVAAERGYVGAVIPPSH  519 (548)
T ss_dssp             HHHHHHHHHHHSBSHHHHHTTSSSEECCGGG
T ss_pred             HHHHHHHHHhhCCHHHHHhcCCCceeeCHHH
Confidence            11111  000134467899999999998653

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=96.90  E-value=0.014  Score=50.97  Aligned_cols=143  Identities=13%  Similarity=-0.004  Sum_probs=92.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      .-.++++-.....+.++..+. .++-+|.|.-. ..|..|.+-+.             ....+.+.+++..+..+.+|+|
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~E~-------------~Gi~~~gA~~~~a~a~a~vP~i  448 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAEK-------------AELLGLGQSLIYSIQTSHIPQF  448 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHHH-------------TTHHHHHHHHHHHHHTCCCCEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHHHH-------------HHHHHHHHHHHHHHHhCCCCEE
Confidence            457899999999998876654 56776666543 44555544332             3455677788899999999999


Q ss_pred             EEEcchhcchhhHHhhh----c--CEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H-H---------H---HHHh
Q 041986          110 AIMDGITMGGGAGIAVH----A--SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H-L---------G---EYLG  169 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~----~--D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~-~---------a---~~l~  169 (195)
                      +.|-|.+.|||+.-...    .  |++++.+++.++       +.++-|++..+.|.-- . .         +   .++.
T Consensus       449 tvI~g~~~Ggg~~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~  521 (587)
T 1pix_A          449 EITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLI  521 (587)
T ss_dssp             EEECSEEETTHHHHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             EEEcCCCccHHHHHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHH
Confidence            99999998887544332    4  887777766665       4433444444333211 1 0         0   1010


Q ss_pred             h-cCCCCCHHHHHhcCccccccCCCC
Q 041986          170 L-TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       170 l-~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      - .-+..++..|.+.|+||.|+++.+
T Consensus       522 ~~y~~~~~p~~aa~~g~iD~VI~p~~  547 (587)
T 1pix_A          522 QAFYTKSRPKVCAELGLVDEIVDMNK  547 (587)
T ss_dssp             HHHHHTTSHHHHHHHTSSSEECCTTT
T ss_pred             HHHHHhCCHHHHHhcCCCccccCHHH
Confidence            0 012478899999999999998764

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.79  E-value=0.0081  Score=51.78  Aligned_cols=152  Identities=13%  Similarity=0.035  Sum_probs=94.4

Q ss_pred             EEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHH
Q 041986           21 TVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVY   99 (195)
Q Consensus        21 ~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (195)
                      .|.=|+|. ..-.++++-.....+.++.++. .++-.|.|.-. +.|..|.+-+.             ....+...+++.
T Consensus       329 gvian~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt-pGf~~G~~~E~-------------~Gi~~~~A~~l~  393 (523)
T 1on3_A          329 GIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PGFLPGVQQEY-------------GGIIRHGAKMLY  393 (523)
T ss_dssp             EEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHHH
T ss_pred             EEEEecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC-CCcCcchHHHH-------------hhHHHHHHHHHH
Confidence            33334543 3357999999999999977764 45666655542 33445544332             234455667788


Q ss_pred             HHhhCCCcEEEEEcchhcchhhHHhhh----cCEEEEeCCeEEecCcccccccCCCchhhHhhhcc-hH-----HH-HHH
Q 041986          100 LVATYSKPHVAIMDGITMGGGAGIAVH----ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLP-GH-----LG-EYL  168 (195)
Q Consensus       100 ~l~~~~~p~Iaav~G~~~g~G~~l~l~----~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~-g~-----~a-~~l  168 (195)
                      .+....+|+|+.|-|.+.|||+.-...    +|++++.+++.++       ..++-|+...+.|.- ..     .. .++
T Consensus       394 a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~  466 (523)
T 1on3_A          394 AYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEK  466 (523)
T ss_dssp             HHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHH
T ss_pred             HHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHH
Confidence            888999999999999999888755544    7777666665554       444444444443321 10     11 112


Q ss_pred             hh--cCCCCCHHHHHhcCccccccCCCC
Q 041986          169 GL--TGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       169 ~l--~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .-  .-+--++..+.+.|+||.|+++.+
T Consensus       467 ~~~y~~~~~~p~~~a~~g~iD~II~p~~  494 (523)
T 1on3_A          467 IEEYQNAFNTPYVAAARGQVDDVIDPAD  494 (523)
T ss_dssp             HHHHHHHHSSHHHHHHTTSSSEECCGGG
T ss_pred             HHHHHHhhCCHHHHHhcCCCCEeeCHHH
Confidence            11  011256678999999999998643

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.75  E-value=0.014  Score=50.40  Aligned_cols=155  Identities=12%  Similarity=0.097  Sum_probs=94.4

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +|.-.-|.=|+|. ..-.++++......+.++..++ .++-+|.|.-. ..|..|.+-+.             ....+..
T Consensus       336 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~-~~iPlv~lvDt-pGf~~G~~~E~-------------~Gi~~~g  400 (531)
T 3n6r_B          336 EGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDA-FEIPLLTLIDV-PGFLPGTSQEY-------------GGVIKHG  400 (531)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CSBCCSHHHHH-------------TTHHHHH
T ss_pred             CCEEEEEEEecccccCCCCCHHHHHHHHHHHHHhhc-cCCCEEEEeCC-CCCCCCHHHHH-------------hhHHHHH
Confidence            3333334445554 2357899998888888876654 45777766553 23334433322             2445677


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhhHHhhh----cCEEEEeCCeEEecCcccccccCCCchhhHhhh-cch------H
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGAGIAVH----ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR-LPG------H  163 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~----~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r-~~g------~  163 (195)
                      .+++..+..+.+|+|+.|-|.+.|||+.-...    +|++++.+++.++.       .++-+++..+-| .+.      .
T Consensus       401 Ak~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~~~~~~~~  473 (531)
T 3n6r_B          401 AKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLGDPEKIAQ  473 (531)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTTSTTHHHH
T ss_pred             HHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhcccccchhHHHH
Confidence            78888999999999999999998888754443    88888877766654       332333333322 111      1


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ...+.  .-+--++..|.+.|++|.|+++.+
T Consensus       474 ~~~~y--~~~~~~p~~aa~~~~vD~vIdP~~  502 (531)
T 3n6r_B          474 HTADY--EERFANPFVASERGFVDEVIQPRS  502 (531)
T ss_dssp             HHHHH--HHHHSSSHHHHHHTSSSEECCGGG
T ss_pred             HHHHH--HHHhcCHHHHHhcCccCcccCHHH
Confidence            11111  111134556778999999998754

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.02  E-value=0.098  Score=45.31  Aligned_cols=95  Identities=13%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      -.++++......+.++..+. .++-+|.|.-.. .|..|.+-+.             ....+.+.+++..+..+.+|+|+
T Consensus       366 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp-Gf~~G~~~E~-------------~Gi~~~gAk~~~a~~~a~vP~it  430 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQ-RGIPLLFLQNIT-GFMVGQKYEA-------------GGIAKHGAKLVTAVACARVPKFT  430 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHH-HTCCEEEEEEEC-CBCCSHHHHH-------------TTHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CccCHHHHHHHHHHHHHHhc-CCCCEEEEecCc-CCCCCHHHHH-------------HHHHHHHHHHHHHHHhCCCCEEE
Confidence            47889988888888887765 457777776643 2444433322             23445677788899999999999


Q ss_pred             EEcchhcchhhHHh----hhcCEEEEeCCeEEec
Q 041986          111 IMDGITMGGGAGIA----VHASYRLATEKTVFAM  140 (195)
Q Consensus       111 av~G~~~g~G~~l~----l~~D~~ia~~~a~~~~  140 (195)
                      .+-|.+.|+|..-.    +.+|++++.+++.++.
T Consensus       431 vi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V  464 (555)
T 3u9r_B          431 VLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV  464 (555)
T ss_dssp             EEEEEEETTHHHHTTCGGGCCSEEEECTTCEEES
T ss_pred             EEeCCccchhhHhhcCccCCCCeEEEcCCcEEEc
Confidence            99999888765332    2368888877776664

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=95.80  E-value=0.014  Score=52.52  Aligned_cols=38  Identities=11%  Similarity=0.121  Sum_probs=34.4

Q ss_pred             CCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC
Q 041986          104 YSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP  141 (195)
Q Consensus       104 ~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p  141 (195)
                      ..+|+|+.|.|+|.|||+.+...||++|+.+++.+.+.
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~lt  295 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILT  295 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESS
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEec
Confidence            47999999999999999999999999999998776654

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=95.72  E-value=0.29  Score=43.75  Aligned_cols=37  Identities=11%  Similarity=0.089  Sum_probs=33.8

Q ss_pred             CCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEec
Q 041986          104 YSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAM  140 (195)
Q Consensus       104 ~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~  140 (195)
                      ..+|+|+.|.|+|.|||..+..+||++|+.+++.+.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~ifl  281 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIIL  281 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEES
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEE
Confidence            6789999999999999999999999999999876555

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=94.84  E-value=0.17  Score=44.12  Aligned_cols=142  Identities=8%  Similarity=0.036  Sum_probs=88.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      -.++++-.+.-.+.++..+. .++-+|.|.-. ..|..|.+-+.             ....+...+++..+..+.+|+|+
T Consensus       387 G~l~~~~a~Kaarfi~lcd~-f~iPlv~lvDt-pGf~~G~~aE~-------------~Gi~~~gAk~l~a~a~a~VP~it  451 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCAR-DRIPLIWLQDT-TGIDVGDEAEK-------------AELLGLGQSLIYSIENSKLPSLE  451 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHHH-------------TTHHHHHHHHHHHHHHHCSCEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhh-cCCCeEEEecC-CCCCCCHHHHH-------------HHHHHHHHHHHHHHHhCCCCEEE
Confidence            36788888888888877765 45777666542 45666654432             34556777888999999999999


Q ss_pred             EEcchhcchhhHHhhh----c--CEEEEeCCeEEecCcccccccCCCchhhHhhh-cch-H-H---------H--HHH-h
Q 041986          111 IMDGITMGGGAGIAVH----A--SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR-LPG-H-L---------G--EYL-G  169 (195)
Q Consensus       111 av~G~~~g~G~~l~l~----~--D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r-~~g-~-~---------a--~~l-~  169 (195)
                      .|-|.+.|||+.....    .  |++++.+++.+       +..++-|+...+-| .+. . .         +  .++ -
T Consensus       452 vI~g~~~Ggg~~am~~~~~~~~~~~~~awp~A~~-------sVm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (588)
T 3gf3_A          452 ITIRKASAAAHYVLGGPQGNNTNVFSIGTGACEY-------YVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQ  524 (588)
T ss_dssp             EESSEEETTHHHHTTCTTCTTTEEEEEECTTCEE-------ESSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH
T ss_pred             EEcCCccHHHHHHhcccccCCccceEEECCCceE-------EeCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHH
Confidence            9999998876643322    1  25666555555       44433344433332 111 0 0         0  010 0


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      -.-+..++-.|-+.|++|.|+++.+
T Consensus       525 ~y~~~~~p~~aA~r~~vD~VIdP~~  549 (588)
T 3gf3_A          525 MYTDKSRPKYCTEKGMVDEIVDMTE  549 (588)
T ss_dssp             HHHHTTSHHHHHHTTSSSEECCGGG
T ss_pred             HHHHhCCHHHHHhcCCCCeeeCHHH
Confidence            0111347888889999999998754

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=90.48  E-value=0.89  Score=40.67  Aligned_cols=105  Identities=15%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      -.++++-.....+.++..+...++-+|.|.- -..|..|.+-+.             ....+...+++..+..+..|+|+
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvD-tpGf~~G~~aE~-------------~Gi~k~gAkll~A~a~a~VP~it  512 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILAN-WRGFSGGQRDMF-------------NEVLKYGSFIVDALVDYKQPIII  512 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCC-CCEECCSHHHHH-------------TTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEec-CCCCCCCHHHHH-------------ccHHHHHHHHHHHHHhCCCCEEE
Confidence            4678899888888888776534566655543 255666655432             34556777889999999999999


Q ss_pred             EEc--chhcchhhHHhhh----cCE--EEEeCCeEEecCcccccccCCCchhhHh
Q 041986          111 IMD--GITMGGGAGIAVH----ASY--RLATEKTVFAMPEVLIGFHPDVGSSYYL  157 (195)
Q Consensus       111 av~--G~~~g~G~~l~l~----~D~--~ia~~~a~~~~pe~~~G~~p~~g~~~~l  157 (195)
                      .+-  |.+.||++ +++.    +|+  +++.       |.+.++..++-|+...+
T Consensus       513 VI~RkGe~~GGA~-~am~~~~~ad~~~v~Aw-------p~A~isVM~pEgaa~Il  559 (758)
T 3k8x_A          513 YIPPTGELRGGSW-VVVDPTINADQMEMYAD-------VNARAGVLEPQGMVGIK  559 (758)
T ss_dssp             EECTTCEEETHHH-HTTCGGGSTTTEEEEEE-------TTCEEESSCHHHHHHHH
T ss_pred             EEecCCccchHHH-HHhCcccCCCHHHHhcC-------CCCEEEccCHHHHHHHH
Confidence            998  89888766 4444    444  5554       44555555444444443

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=90.29  E-value=2.8  Score=37.75  Aligned_cols=95  Identities=9%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      -.++++-.....+.++..+. .++-+|.|.-. ..|..|.+-+.             ....+...+++..+..+.+|+|+
T Consensus       462 G~l~~~~a~KaarfI~~cd~-f~iPlv~LvDt-pGf~~G~~aE~-------------~Gi~~~gAkll~A~a~a~VP~it  526 (793)
T 2x24_A          462 QVWFPDSAYKTAQAIKDFNR-EKLPLMIFANW-RGFSGGMKDMY-------------DQVLKFGAYIVDGLRKYRQPVLI  526 (793)
T ss_dssp             TEECHHHHHHHHHHHHHHHT-TTCCEEEECCB-CEECCSHHHHH-------------TTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CcccHHHHHHHHHHHHHhcc-CCCCEEEEecC-CCCCCCHHHHH-------------hhHHHHHHHHHHHHHhcCCCEEE
Confidence            36899999999999888864 55666655442 45655554332             34556777889999999999999


Q ss_pred             EE--cchhcchhhHHh---hhcCE--EEEeCCeEEec
Q 041986          111 IM--DGITMGGGAGIA---VHASY--RLATEKTVFAM  140 (195)
Q Consensus       111 av--~G~~~g~G~~l~---l~~D~--~ia~~~a~~~~  140 (195)
                      .|  .|.+.||++.++   +..|+  +++.+++.++.
T Consensus       527 vI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V  563 (793)
T 2x24_A          527 YIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV  563 (793)
T ss_dssp             EECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred             EEecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence            99  888876655332   23454  45555444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	9e-34
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	3e-23
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	4e-18
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	3e-16
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	2e-15
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	7e-15
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	6e-13
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	2e-11
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	3e-11
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	2e-09
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	4e-07
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	7e-07
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	1e-06
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	4e-06

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (297), Expect = 9e-34
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 10  HVLVEERANS---RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSF 66
           +++ E++  +     + LNRP  LNAL   ++  L +  E++E +  V  +V+ G  ++F
Sbjct: 5   YIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAF 64

Query: 67  CAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
            AG D+                       S    +    KP +A ++G  +GGG  +A+ 
Sbjct: 65  AAGADIKEMQNR------TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMM 118

Query: 127 ASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFCG 184
                A EK  F  PE+L+G  P  G +  L+R  G  L   + LTG  +S ++    G
Sbjct: 119 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 90.9 bits (224), Expect = 3e-23
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 2/179 (1%)

Query: 12  LVE-ERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGG 70
           +V+ E+ +   V LN P   N L+  M   L +  +  E + GV  VV+ G G++F AG 
Sbjct: 1   MVQVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGA 60

Query: 71  DVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYR 130
           D+    R+ + G  E  +    +L    + V TY KP VA ++G  + GGAG+A+     
Sbjct: 61  DLAFLERVTELGAEENYRH-SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119

Query: 131 LATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGEEMLFCGLATHY 189
           +  E+      EV IGF   + S   +  +     + L LTG  +   E    GL    
Sbjct: 120 VMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.9 bits (190), Expect = 4e-18
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 10  HVLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            + V         V LNRP   NA+N +    L + ++    +S    VV+ G G+ F +
Sbjct: 4   SIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTS 63

Query: 69  GGDVVGAYRMLKEGRV-------EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGA 121
           G D++     + +             ++L         ++    KP +A + G  +GGG 
Sbjct: 64  GIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGV 123

Query: 122 GIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH 163
            +      R  T+   F + EV +G   DVG+   L ++ G+
Sbjct: 124 DLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGN 165

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 3e-16
 Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 4/183 (2%)

Query: 8   QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFC 67
           ++  L EE      + +NR +  N+L+ +++ +L+K  ++ +++  V  ++I+       
Sbjct: 5   RVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIF 64

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
             G      +   +    E       + + +  +A    P +A +DG+ +GGG  +A+  
Sbjct: 65  CAGAD---LKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALAC 121

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYL-SRLPGHLGEYLGLTGATLSGEEMLFCGLA 186
             R+A       + E  +   P  G +  L   +   L + L  +   L G+E    GL 
Sbjct: 122 DIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLI 181

Query: 187 THY 189
           +H 
Sbjct: 182 SHV 184

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 2e-15
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            ++V        ++ NRP   NA+NT M   + +  ++   +  +  V+  GNG  + +G
Sbjct: 4   TLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLT-GNGDYYSSG 62

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
            D+     +   G  E+ K     L  FV     + KP +A+++G  +G    +      
Sbjct: 63  NDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDA 122

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYL 157
             A+++  F  P   +G  P+  SSY  
Sbjct: 123 VYASDRATFHTPFSHLGQSPEGCSSYTF 150

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 69.0 bits (167), Expect = 7e-15
 Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 21  TVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK 80
            V  NRP V NA     V  L +  +    +  V  V++ GNG S   GG    +    +
Sbjct: 32  RVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQR 91

Query: 81  EG--------------RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVH 126
                            V+  +     +     L+    K  + +++G   GGG  + V 
Sbjct: 92  IRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVV 151

Query: 127 ASYRLAT-EKTVFAMPEVLIGFHPDVGSSYYLSRLPGH 163
               LA+ E   F   +  +G       S YL+R  G 
Sbjct: 152 CDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQ 189

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 6e-13
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 9/188 (4%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +          + L  P  LNAL       L +  E  + N  V F +I+ +GR F +G
Sbjct: 6   KISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSG 65

Query: 70  GDVVGAYRMLKEGRVEECK-------ELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAG 122
            D  G  +   +   +                         +SK  +  ++G  +G  A 
Sbjct: 66  ADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAA 125

Query: 123 IAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGL--TGATLSGEEM 180
           +        +    V+ +           G +     L                   + M
Sbjct: 126 LVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIM 185

Query: 181 LFCGLATH 188
              G  + 
Sbjct: 186 CENGFISK 193

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 59.0 bits (141), Expect = 2e-11
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 1/155 (0%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +          + +  P   NAL+   +  +T      E +  V  V+I G   +FCAG
Sbjct: 4   AIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63

Query: 70  GDVVG-AYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
             +          G  +  +      +  ++ +    +P +A ++G+  GGG GI++ + 
Sbjct: 64  FYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASD 123

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH 163
             +  +   F      IG   D  +SY L+R+ G 
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTATSYSLARIVGM 158

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 58.6 bits (140), Expect = 3e-11
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 4/177 (2%)

Query: 10  HVLVEERANS-RTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFC 67
            + V    +    +  + +   +N  N   +  L +  ++ + ++ V  V++      F 
Sbjct: 7   AITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFI 66

Query: 68  AGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHA 127
            G D+       K    E                   + P VA ++GI +GGG  + + A
Sbjct: 67  VGADITEFVENFKLPDAELIAG-NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAA 125

Query: 128 SYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH-LGEYLGLTGATLSGEEMLFC 183
            +R+  +     +PEV +G +P  G +  L RL G         +G     E+ L  
Sbjct: 126 DFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-09
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 2/155 (1%)

Query: 10  HVLVEERANSRTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCA 68
            ++V++      ++L+ R    NALNT ++  +     S   +     V+    G  FC 
Sbjct: 3   DIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCC 61

Query: 69  GGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHAS 128
           G D     R L+  R     E+  T+ +FV     + KP V  ++G  +G GA I     
Sbjct: 62  GLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 121

Query: 129 YRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGH 163
              A EK  F  P    G  PD  SS    ++ G 
Sbjct: 122 LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK 156

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 3/45 (6%), Positives = 12/45 (26%)

Query: 10 HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGV 54
          ++ +E       V ++         ++    L   +     +   
Sbjct: 14 NIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDREN 58

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 46.0 bits (107), Expect = 7e-07
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 11 VLVEERANS-RTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
          ++ EE ++  R + L+ P+  N  + ++   +         +  V  VV+ G      + 
Sbjct: 1  MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSA 60

Query: 70 G 70
          G
Sbjct: 61 G 61

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (105), Expect = 1e-06
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 5/176 (2%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
           +V V        +  N    LNAL+   +  L +              +I          
Sbjct: 5   YVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIR--CIILRAPSGSKVF 62

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASY 129
                 + +   GR  +       L     ++  + KP +++++G   GG   + + +  
Sbjct: 63  SAGHDIHELPSGGR--DPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDL 120

Query: 130 RLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGL-TGATLSGEEMLFCG 184
            +A   + F+M  V +G   ++   + L+R  G       + T + ++ +  L  G
Sbjct: 121 IIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVG 176

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 44.1 bits (102), Expect = 4e-06
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 10  HVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAG 69
            +           I  R   LNA+  ++   L + +   E   GV  V+++G G  F AG
Sbjct: 10  GLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAG 69

Query: 70  GDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGG 119
           G       M            F      V     + +P VA ++ + +G 
Sbjct: 70  GSFGLIEEMRASHEALLRV--FWEARDLVLGPLNFPRPVVAAVEKVAVGA 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.62
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.58
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.48
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.41
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	98.24
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	98.23
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	98.2
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	98.12
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	98.02
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.99
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.9
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.89
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	97.2
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.1
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.38
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.11
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	95.84
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	95.53
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	91.52

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-49  Score=311.51  Aligned_cols=187  Identities=21%  Similarity=0.308  Sum_probs=169.8

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEEC   87 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~   87 (195)
                      |++|.++++++|++||||||++.|++|.+++.+|.+++++++.|+.+ +||++|.|+.||+|.|++++............
T Consensus         2 ~~~i~~~~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   80 (245)
T d2f6qa1           2 FETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKA   80 (245)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHH
T ss_pred             cceEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhccccccccccc
Confidence            67899999999999999999999999999999999999999998776 89999999999999999998765544444455


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHH
Q 041986           88 KELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGE  166 (195)
Q Consensus        88 ~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~  166 (195)
                      ......+.++++++.++|||+||+|||+|+|||++++++||+||++++++|++||+++|++|++|+++++++++| .+++
T Consensus        81 ~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~  160 (245)
T d2f6qa1          81 KNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT  160 (245)
T ss_dssp             HHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             chhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhh
Confidence            566667788999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          167 YLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       167 ~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++|++++|+||+++||||+|+|++++
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  189 (245)
T d2f6qa1         161 EMLIFGKKLTAGEACAQGLVTEVFPDSTF  189 (245)
T ss_dssp             HHHTTCCCEEHHHHHHTTSCSEEECTTTH
T ss_pred             hhcccccccccccccccccccccCCcchH
Confidence            99999999999999999999999999864

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-49  Score=311.69  Aligned_cols=187  Identities=25%  Similarity=0.352  Sum_probs=174.2

Q ss_pred             cceEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHH
Q 041986            8 QIHVLVEERANSRTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~-~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      |++|.++++++|++|++| ||++.|++|.+|+.+|.++++.++.| ++++|||||.|+.||+|.|++++...........
T Consensus         1 y~~i~v~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   79 (258)
T d2fw2a1           1 YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTA   79 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccch
Confidence            578999999999999997 68899999999999999999999986 5799999999999999999999877655554455


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      ..++.+.+.+++.++.++|||+||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++++|++| ..+
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a  159 (258)
T d2fw2a1          80 SLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASA  159 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred             hhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcccc
Confidence            5677788889999999999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+++++|++++|+||+++||||+|||++++
T Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l  189 (258)
T d2fw2a1         160 NEMLIAGRKLTAREACAKGLVSQVFLTGTF  189 (258)
T ss_dssp             HHHHTTCCEEEHHHHHHTTSCSEEECSTTH
T ss_pred             chhhccCccccccccccccccccccccccc
Confidence            999999999999999999999999998864

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-49  Score=313.26  Aligned_cols=188  Identities=16%  Similarity=0.144  Sum_probs=169.7

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc----
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG----   82 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~----   82 (195)
                      .++.|.++.+++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|.|+.||+|.|++++.......    
T Consensus         3 ~~e~i~~~~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (266)
T d1pjha_           3 QNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY   82 (266)
T ss_dssp             CBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred             CCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccc
Confidence            4678999999999999999999999999999999999999999999999999999999999999999986543211    


Q ss_pred             ---cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEe-CCeEEecCcccccccCCCchhhHhh
Q 041986           83 ---RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLAT-EKTVFAMPEVLIGFHPDVGSSYYLS  158 (195)
Q Consensus        83 ---~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~-~~a~~~~pe~~~G~~p~~g~~~~l~  158 (195)
                         .......+......++..+.++||||||+|||+|+|||++|+++||+||++ +.++|++||+++|++|++|++++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~  162 (266)
T d1pjha_          83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLP  162 (266)
T ss_dssp             SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccc
Confidence               123345566677789999999999999999999999999999999999996 5578999999999999999999999


Q ss_pred             hcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          159 RLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       159 r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      |++| ..+.+++++|++++|+||+++||||+|+++++
T Consensus       163 r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~  199 (266)
T d1pjha_         163 LKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPS  199 (266)
T ss_dssp             HHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCT
T ss_pred             cccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchh
Confidence            9999 89999999999999999999999999998764

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-49  Score=314.36  Aligned_cols=184  Identities=26%  Similarity=0.421  Sum_probs=167.1

Q ss_pred             CCcceEEEEEe---CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcc
Q 041986            6 SSQIHVLVEER---ANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEG   82 (195)
Q Consensus         6 ~~~~~v~~~~~---~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~   82 (195)
                      ++|+.|.++++   ++|++||||||++.|++|.+|+.+|.++|++++.|+++++|||||.|+.||+|.|++++...... 
T Consensus         1 ~~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-   79 (260)
T d1mj3a_           1 ANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQ-   79 (260)
T ss_dssp             CCCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHH-
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchh-
Confidence            36889999986   48999999999999999999999999999999999999999999999999999999987542211 


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch
Q 041986           83 RVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG  162 (195)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g  162 (195)
                           ..+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|
T Consensus        80 -----~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig  154 (260)
T d1mj3a_          80 -----DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVG  154 (260)
T ss_dssp             -----HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHC
T ss_pred             -----hhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhC
Confidence                 233345566778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          163 -HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       163 -~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                       ..+.+++++|++++++||+++|||++++|++++
T Consensus       155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~  188 (260)
T d1mj3a_         155 KSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL  188 (260)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTH
T ss_pred             HHHHHHHHHcCcccCchhhccCCCceeeeccccc
Confidence             899999999999999999999999999998763

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=7.4e-48  Score=312.69  Aligned_cols=187  Identities=18%  Similarity=0.252  Sum_probs=170.1

Q ss_pred             cceEEEEE-eCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            8 QIHVLVEE-RANSRTVILN-RPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         8 ~~~v~~~~-~~~v~~i~l~-~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ++.+.+++ +++|++|+|| +|++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++.......+..
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   84 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAE   84 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHH
T ss_pred             CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchh
Confidence            34788886 7889999998 788999999999999999999999999999999999999999999999987655443332


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HH
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HL  164 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~  164 (195)
                       ........++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..
T Consensus        85 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~  163 (310)
T d1wdka4          85 -LIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN  163 (310)
T ss_dssp             -HHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             -hhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhh
Confidence             2334445778899999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          165 GEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       165 a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +.+++++|++++++||+++||||+|||+++|
T Consensus       164 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l  194 (310)
T d1wdka4         164 AVEWIASGKENRAEDALKVSAVDAVVTADKL  194 (310)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGH
T ss_pred             hhhhhccccccCHHHHhhccCccEEccHHHH
Confidence            9999999999999999999999999998764

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2e-48  Score=309.58  Aligned_cols=187  Identities=21%  Similarity=0.251  Sum_probs=172.6

Q ss_pred             CCcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccH
Q 041986            6 SSQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         6 ~~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      ..|+.+.+++ +++|++|+| ||++.|++|.+|+.+|.+++++++.|+++|+|||||.|+.||+|.|++++.....  ..
T Consensus         6 ~~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~--~~   82 (263)
T d1wz8a1           6 ARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRA--SH   82 (263)
T ss_dssp             HHCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHH--CH
T ss_pred             cCCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcc--cc
Confidence            4577888887 678999999 7888999999999999999999999999999999999999999999999865432  22


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      +....+.....+++..+.++||||||+|||+|+|||++++++||++|++++++|++||+++|++|++|+++++++++| .
T Consensus        83 ~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~  162 (263)
T d1wz8a1          83 EALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA  162 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred             cccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345667778888999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+.+++++|++++|+||+++||||+|||++++
T Consensus       163 ~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l  194 (263)
T d1wz8a1         163 KAKYHLLLNEPLTGEEAERLGLVALAVEDEKV  194 (263)
T ss_dssp             HHHHHHHHTCCEEHHHHHHHTSSSEEECGGGH
T ss_pred             hhhhhcccccccchhHHHhcCCcccccchhhh
Confidence            99999999999999999999999999998764

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=5.8e-48  Score=307.76  Aligned_cols=187  Identities=22%  Similarity=0.260  Sum_probs=170.5

Q ss_pred             cceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhh-cccHHH
Q 041986            8 QIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLK-EGRVEE   86 (195)
Q Consensus         8 ~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~-~~~~~~   86 (195)
                      |+.|.++.+++|++||||||++.|++|.+++.+|.++++.+++|+++++|||||.|+.||+|.|++++..... ....+.
T Consensus         2 y~~i~~~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (269)
T d1nzya_           2 YEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDH   81 (269)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHH
T ss_pred             CCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhhH
Confidence            6789999999999999999999999999999999999999999999999999999999999999998753221 112233


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHH
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLG  165 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a  165 (195)
                      .......++.++.++.++|||+||+|||+|+|||++|+++||+|+++++++|++|+.++|+.|++|++++++|++| ..+
T Consensus        82 ~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a  161 (269)
T d1nzya_          82 FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRA  161 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhhh
Confidence            3445556778999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 EYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 ~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      ++++++|++++|+||+++||||+|||+++
T Consensus       162 ~~l~ltg~~i~a~eA~~~Glv~~vv~~~~  190 (269)
T d1nzya_         162 MELMLTNRTLYPEEAKDWGLVSRVYPKDE  190 (269)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSCSCEECHHH
T ss_pred             hhccccccccchhHHHHcCCccccccccc
Confidence            99999999999999999999999998765

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=1e-47  Score=299.88  Aligned_cols=180  Identities=23%  Similarity=0.328  Sum_probs=163.7

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKE   89 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (195)
                      +..+.+++|++||||||++.|++|.+++.+|.+++++++.|+++++|||+|.| +.||+|.|++++......   +....
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~---~~~~~   78 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRS---EDIEE   78 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CH---HHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccc---ccccc
Confidence            34567889999999999999999999999999999999999999999999987 799999999998654322   33456


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHH
Q 041986           90 LFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYL  168 (195)
Q Consensus        90 ~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l  168 (195)
                      +...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+ ++++|++| ..++++
T Consensus        79 ~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l  157 (230)
T d2a7ka1          79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEI  157 (230)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHH
T ss_pred             chhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccc
Confidence            6778888999999999999999999999999999999999999999999999999999988765 67899999 899999


Q ss_pred             hhcCCCCCHHHHHhcCccccccCCCC
Q 041986          169 GLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       169 ~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +++|++++|+||+++||||+|||+++
T Consensus       158 ~l~g~~~~a~eA~~~Glv~~vv~~~~  183 (230)
T d2a7ka1         158 IYQCQSLDAPRCVDYRLVNQVVESSA  183 (230)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHH
T ss_pred             ccccccchHHHHHHhhhcccCCChHH
Confidence            99999999999999999999999765

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-47  Score=304.41  Aligned_cols=182  Identities=18%  Similarity=0.266  Sum_probs=163.1

Q ss_pred             CcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--CCceeccccchhHHHhhhcccH
Q 041986            7 SQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN--GRSFCAGGDVVGAYRMLKEGRV   84 (195)
Q Consensus         7 ~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~--g~~F~~G~dl~~~~~~~~~~~~   84 (195)
                      +|++|.++++++|++|+||+|++.|++|.+++.+|.++|++++. +++++|||+|.  |+.||+|.|++++.....+.. 
T Consensus         2 ~~~~i~~~~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~-   79 (261)
T d1ef8a_           2 SYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPL-   79 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-----CTT-
T ss_pred             CCCEEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCcccc-
Confidence            46789999999999999999999999999999999999999974 57999999986  479999999999865433221 


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-H
Q 041986           85 EECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        85 ~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                          .+.+.++++++++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| .
T Consensus        80 ----~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~  155 (261)
T d1ef8a_          80 ----SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             ----CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             ----ccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence                23345667888999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+.+++++|+.++|+||+++||||+++|+++
T Consensus       156 ~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~  186 (261)
T d1ef8a_         156 IVKELIFTASPITAQRALAVGILNHVVEVEE  186 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHH
T ss_pred             ccccccccCceEcHHHHHHcCCcceeeechh
Confidence            9999999999999999999999999998764

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-46  Score=296.63  Aligned_cols=182  Identities=31%  Similarity=0.398  Sum_probs=164.7

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHH
Q 041986           11 VLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKEL   90 (195)
Q Consensus        11 v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (195)
                      |.+|+ |+|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++.+...... .......+
T Consensus         2 v~ie~-G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~-~~~~~~~~   79 (253)
T d1uiya_           2 VQVEK-GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTEL-GAEENYRH   79 (253)
T ss_dssp             EEEEC-SSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTS-CHHHHHHH
T ss_pred             EEEee-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhcccc-Ccccccch
Confidence            45553 78999999999999999999999999999999999999999999999999999999987655433 33444566


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHh
Q 041986           91 FRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLG  169 (195)
Q Consensus        91 ~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~  169 (195)
                      ......+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|. |++++++|++| ..+++++
T Consensus        80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~  158 (253)
T d1uiya_          80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHH
T ss_pred             hhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHh
Confidence            667788899999999999999999999999999999999999999999999999998875 56888999999 9999999


Q ss_pred             hcCCCCCHHHHHhcCccccccCCCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      ++|++++++||+++||||+|+|++++
T Consensus       159 l~g~~~~a~eA~~~Glv~~v~~~~~~  184 (253)
T d1uiya_         159 LTGRLVEAREAKALGLVNRIAPPGKA  184 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCH
T ss_pred             hcCcCCCHHHHHHhCCCccccccccc
Confidence            99999999999999999999998863

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.1e-46  Score=297.18  Aligned_cols=184  Identities=18%  Similarity=0.233  Sum_probs=169.7

Q ss_pred             CCcceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHH
Q 041986            6 SSQIHVLVEERANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVE   85 (195)
Q Consensus         6 ~~~~~v~~~~~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~   85 (195)
                      ++|++|.++++++|++||||+|++.|++|.+++.+|.++++.++.|+++++|||+|.|+.||+|.|++++..    ...+
T Consensus        10 ~~y~~i~~~~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~----~~~~   85 (249)
T d1szoa_          10 QKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL----GTPH   85 (249)
T ss_dssp             TSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC----SSHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhc----cccc
Confidence            578899999999999999999999999999999999999999999999999999999999999999998743    2334


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEe-cCcccccccCCCchhhHhhhcch-H
Q 041986           86 ECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFA-MPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        86 ~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~-~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      ...++...++++++++.++|||+|++++|.|.| |++++++||+||++++++|. .||.++|++|++|++++++|++| .
T Consensus        86 ~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~  164 (249)
T d1szoa_          86 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN  164 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHH
T ss_pred             chhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeeccccccccccccccccccccCcc
Confidence            456677778889999999999999999998854 77999999999999999995 79999999999999999999999 8


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      .+++++++|++++++||+++||||+|||+++
T Consensus       165 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  195 (249)
T d1szoa_         165 RGRYFLLTGQELDARTALDYGAVNEVLSEQE  195 (249)
T ss_dssp             HHHHHHHTTCEEEHHHHHHHTSCSEEECHHH
T ss_pred             ceeeecccCCCCCHHHHHHhCCcCcccCHHH
Confidence            9999999999999999999999999999765

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.7e-46  Score=296.91  Aligned_cols=187  Identities=23%  Similarity=0.335  Sum_probs=167.9

Q ss_pred             CcceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhccc--
Q 041986            7 SQIHVLVEE-RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGR--   83 (195)
Q Consensus         7 ~~~~v~~~~-~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~--   83 (195)
                      .|+++.++. +++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|+.||+|.|+.++.....+..  
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence            367888865 88999999999999999999999999999999999999999999999999999999998876544321  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhh
Q 041986           84 -----VEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLS  158 (195)
Q Consensus        84 -----~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~  158 (195)
                           ............+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~  160 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLP  160 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGG
T ss_pred             cccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccc
Confidence                 112334555677888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcch-HH-HHHHhhcCCCCCHHHHHhcCccccccCCC
Q 041986          159 RLPG-HL-GEYLGLTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       159 r~~g-~~-a~~l~l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      |++| .. +.+++++|++++++||+++||||+|+|++
T Consensus       161 ~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~  197 (275)
T d1dcia_         161 KVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDK  197 (275)
T ss_dssp             GTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSH
T ss_pred             cccccccccccccccccccchhhhccCCCceeeeehh
Confidence            9999 65 46899999999999999999999999875

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-46  Score=298.34  Aligned_cols=176  Identities=23%  Similarity=0.376  Sum_probs=163.6

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNG-RSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| +.||+|.|++.+....    ......+.+.+
T Consensus        13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~----~~~~~~~~~~~   88 (266)
T d1hzda_          13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMS----SSEVGPFVSKI   88 (266)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSC----HHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccccccccccccc----chhhhhhhhHH
Confidence            567999999999999999999999999999999999999999999998 6899999998876432    23345667788


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCC
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGA  173 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~  173 (195)
                      .++++.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++| .++.+++++|+
T Consensus        89 ~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~  168 (266)
T d1hzda_          89 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  168 (266)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             CCCHHHHHhcCccccccCCCCC
Q 041986          174 TLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       174 ~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++|+||+++||||+|||++++
T Consensus       169 ~~~a~eA~~~Glv~~vv~~~~l  190 (266)
T d1hzda_         169 VLDGKEAKAVGLISHVLEQNQE  190 (266)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTT
T ss_pred             ccCHHHhhcccccccccChhhh
Confidence            9999999999999999999864

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=3.6e-46  Score=294.29  Aligned_cols=181  Identities=18%  Similarity=0.238  Sum_probs=164.4

Q ss_pred             eEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-ceeccccchhHHHhhhcccHHH
Q 041986           10 HVLVEE--RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGR-SFCAGGDVVGAYRMLKEGRVEE   86 (195)
Q Consensus        10 ~v~~~~--~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~-~F~~G~dl~~~~~~~~~~~~~~   86 (195)
                      .|.++.  +++|++||||||+ .|++|.+++++|.++++.+++|+++++|||+|.|+ .||+|.|++++...    ....
T Consensus         3 ~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~----~~~~   77 (249)
T d1sg4a1           3 RVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR----SPAH   77 (249)
T ss_dssp             SEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSC----CHHH
T ss_pred             cEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccc----cccc
Confidence            345554  5789999999996 69999999999999999999999999999999985 79999999987532    3345


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEE--ecCcccccccCCCchhhHhhhcch-H
Q 041986           87 CKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVF--AMPEVLIGFHPDVGSSYYLSRLPG-H  163 (195)
Q Consensus        87 ~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~--~~pe~~~G~~p~~g~~~~l~r~~g-~  163 (195)
                      ...+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|  ++||+++|++|++|++++++|++| .
T Consensus        78 ~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~  157 (249)
T d1sg4a1          78 YAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHR  157 (249)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHH
T ss_pred             ccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccc
Confidence            5677788889999999999999999999999999999999999999999876  689999999999999999999999 8


Q ss_pred             HHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          164 LGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       164 ~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      .+.+++++|++++|+||+++||||+++|++++
T Consensus       158 ~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l  189 (249)
T d1sg4a1         158 AAERALQLGLLFPPAEALQVGIVDQVVPEEQV  189 (249)
T ss_dssp             HHHHHHHHTCCBCHHHHHHHTSSSEEECGGGH
T ss_pred             cccccccccccccHHHHHhhccccccCChHHH
Confidence            99999999999999999999999999998763

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1e-44  Score=292.60  Aligned_cols=189  Identities=23%  Similarity=0.297  Sum_probs=154.7

Q ss_pred             CcceEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-------CCceeccccchhHHH
Q 041986            7 SQIHVLVEE--RANSRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGN-------GRSFCAGGDVVGAYR   77 (195)
Q Consensus         7 ~~~~v~~~~--~~~v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~-------g~~F~~G~dl~~~~~   77 (195)
                      +++.|.+++  +++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.       |+.||+|.|+.....
T Consensus        16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~   95 (297)
T d1q52a_          16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR   95 (297)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred             CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence            456677875  68999999999999999999999999999999999999999999998       456788888876543


Q ss_pred             hhh-------cccHHHHHHHHHHHHHHHHHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccC
Q 041986           78 MLK-------EGRVEECKELFRTLYSFVYLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHP  149 (195)
Q Consensus        78 ~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p  149 (195)
                      ...       ....+........+..+...+.++||||||+|||+|+|||++++++||+||++++ +.|++||+++|++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p  175 (297)
T d1q52a_          96 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  175 (297)
T ss_dssp             ----------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCC
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccccc
Confidence            221       1111222333445667888999999999999999999999999999999999875 57999999999999


Q ss_pred             CCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccccCCCCC
Q 041986          150 DVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHYSLSAVC  195 (195)
Q Consensus       150 ~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~l  195 (195)
                      +++++++|+|++| ..+++++++|++++|+||+++||||+|+|++++
T Consensus       176 ~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el  222 (297)
T d1q52a_         176 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAEL  222 (297)
T ss_dssp             CSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGH
T ss_pred             ccccccccccccCccceeeccccccccchHhhhhhccccccCchHHh
Confidence            9999999999999 999999999999999999999999999998763

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=3.8e-07  Score=66.39  Aligned_cols=135  Identities=15%  Similarity=0.116  Sum_probs=88.6

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           33 LNTSMVALLTKQYESWENN---SGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~---~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      ++.++..++...|..++..   +.+. +.|.      |.|+|+..-.                   .+...+...+.|+.
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~In------S~GG~v~~gl-------------------~i~d~i~~~~~~v~   75 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDIS-LYIN------SPGGSISAGM-------------------AIYDTMVLAPCDIA   75 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEE------ECCBCHHHHH-------------------HHHHHHHHCSSCEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEE-EEee------CCCCCHHHHH-------------------HHHHHHHhhcccee
Confidence            6888888888887665432   2233 3344      4566664321                   24456668899999


Q ss_pred             EEEcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhh---------------Hhhhcch---HHHHHHh
Q 041986          110 AIMDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSY---------------YLSRLPG---HLGEYLG  169 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~---------------~l~r~~g---~~a~~l~  169 (195)
                      ..+.|.|.+.|..+++++|  .|++.++++|-+.+...|+.-...-..               .+.+..|   ..-.+.+
T Consensus        76 t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~  155 (179)
T d2cbya1          76 TYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS  155 (179)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             eehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence            9999999999999999999  899999999999887554431110000               1111222   1223345


Q ss_pred             hcCCCCCHHHHHhcCccccccCCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLSA  193 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~~  193 (195)
                      -.-..++|+||++.|+||+|+.+.
T Consensus       156 ~~d~~l~a~EA~~~GliDeIi~~~  179 (179)
T d2cbya1         156 DRDRWFTAAEALEYGFVDHIITRA  179 (179)
T ss_dssp             HTTCEEEHHHHHHHTSCSEECSCC
T ss_pred             cCCceecHHHHHHcCCCcEEecCC
Confidence            566779999999999999999763

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=2.3e-07  Score=67.72  Aligned_cols=134  Identities=17%  Similarity=0.111  Sum_probs=90.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 041986           33 LNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVAIM  112 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Iaav  112 (195)
                      ++..+..++...+..++.++..+-+.|.=+    |.|+|+..                   ...+.+.+..++.|+...+
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~In----S~GG~v~~-------------------g~~i~d~i~~~~~~v~tv~   81 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVITA-------------------GMSIYDTMQFIKPDVSTIC   81 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceEEEEe----CCCccHHH-------------------HHHHHHHHHhCCCCEEEEE
Confidence            578888888888887764332222222221    45666543                   2235567778999999999


Q ss_pred             cchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhhH------------------hhhcch---HHHHHHh
Q 041986          113 DGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSYY------------------LSRLPG---HLGEYLG  169 (195)
Q Consensus       113 ~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~~------------------l~r~~g---~~a~~l~  169 (195)
                      .|.|.+.|..+++++|  .|++.++++|-+.+...|..   |-..-                  +.+..|   ....+.+
T Consensus        82 ~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~  158 (183)
T d1yg6a1          82 MGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT  158 (183)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             EEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            9999999999999998  79999999999988765543   11111                  111112   1122333


Q ss_pred             hcCCCCCHHHHHhcCccccccCC
Q 041986          170 LTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       170 l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      -.-..++|+||++.|+||+|+..
T Consensus       159 ~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         159 ERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             SSCEEEEHHHHHHHTSSSEECCC
T ss_pred             ccCccccHHHHHHcCCCcEEecc
Confidence            33344799999999999999975

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.48  E-value=1.4e-06  Score=64.05  Aligned_cols=134  Identities=15%  Similarity=0.124  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHHHHHHHhcC-C--CceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           33 LNTSMVALLTKQYESWENN-S--GVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~-~--~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      ++..+..++...|..++.+ +  .+. +.|.+      .|+|+..                   ...+.+.+...+.|+.
T Consensus        33 I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS------~GG~v~~-------------------glai~d~i~~~~~~v~   86 (192)
T d1y7oa1          33 VEDNMANSVIAQLLFLDAQDSTKDIY-LYVNT------PGGSVSA-------------------GLAIVDTMNFIKADVQ   86 (192)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEE------CCBCHHH-------------------HHHHHHHHHHSSSCEE
T ss_pred             EchHHHHHHHHHHHHhhhhcccCcee-eeecC------CCCCHHH-------------------HHHHHHHHHhcCcceE
Confidence            6788888888888766532 2  333 34444      4555442                   1235556778999999


Q ss_pred             EEEcchhcchhhHHhhh--cCEEEEeCCeEEecCcccccccCCCchhh------H-----------hhhcch---HHHHH
Q 041986          110 AIMDGITMGGGAGIAVH--ASYRLATEKTVFAMPEVLIGFHPDVGSSY------Y-----------LSRLPG---HLGEY  167 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~--~D~~ia~~~a~~~~pe~~~G~~p~~g~~~------~-----------l~r~~g---~~a~~  167 (195)
                      ..+.|.|.+.|..++++  +|.|++.+++++-+.+...|..-..-...      .           +....|   ....+
T Consensus        87 t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~  166 (192)
T d1y7oa1          87 TIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHA  166 (192)
T ss_dssp             EEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             EEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999888776  57999999999999888766542111110      0           111112   12233


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      .+-.-..++|+||++.||||+|+..
T Consensus       167 ~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         167 DAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hhcCCceecHHHHHHcCCCcEEecC
Confidence            4555667999999999999999865

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.41  E-value=6e-06  Score=60.39  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=90.1

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           33 LNTSMVALLTKQYESWENN--SGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~--~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      +|.++..++...|..++..  +++. +.|.      |.|+|+..-                   ..+...+..++.|+..
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~IN------S~GG~v~~g-------------------~ai~d~i~~~~~~v~t   80 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIK-IYIN------SPGGSINEG-------------------LAILDIFNYIKSDIQT   80 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEE-EEEE------ECCBCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeE-EEEe------CchhhhhHH-------------------HHHHHHHHhhCCceEE
Confidence            6888888888888777542  2333 3333      556666532                   2245566678999999


Q ss_pred             EEcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhh------------------Hhhhcch-H--HHHH
Q 041986          111 IMDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSY------------------YLSRLPG-H--LGEY  167 (195)
Q Consensus       111 av~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~------------------~l~r~~g-~--~a~~  167 (195)
                      .+.|.|.+.|..+++++|  .|++.++++|-+.+...|..   |-..                  .+.+.-| .  .-.+
T Consensus        81 v~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~  157 (190)
T d2f6ia1          81 ISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEK  157 (190)
T ss_dssp             EEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999999988  59999999999988876553   1111                  1112222 1  1223


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      .+-.-..++|+||++.||||+|+.+
T Consensus       158 ~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         158 DSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             hccCCeeecHHHHHHcCCCcEEccc
Confidence            3344556999999999999999965

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.24  E-value=6.8e-06  Score=60.22  Aligned_cols=132  Identities=12%  Similarity=0.073  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           33 LNTSMVALLTKQYESWENN---SGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        33 ~~~~~~~~l~~~l~~~~~~---~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      ++..+..++...|..++..   +++.. .|.+      .|+++..                   ...+.+.+...+.|+.
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~l-~InS------~GG~v~~-------------------g~~i~d~i~~~~~~V~   88 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIHM-YINS------PGGVVTA-------------------GLAIYDTMQYILNPIC   88 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEE-EEEE------CCBCHHH-------------------HHHHHHHHHHSCSCEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEEE-Eeec------CcccHHH-------------------HHHHHHHHHhhcCceE
Confidence            6788888888777666532   23433 3344      4444432                   1235556778899999


Q ss_pred             EEEcchhcchhhHHhhhcC--EEEEeCCeEEecCcccccccCCCchhhH-----------------hhhcch---HHHHH
Q 041986          110 AIMDGITMGGGAGIAVHAS--YRLATEKTVFAMPEVLIGFHPDVGSSYY-----------------LSRLPG---HLGEY  167 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D--~~ia~~~a~~~~pe~~~G~~p~~g~~~~-----------------l~r~~g---~~a~~  167 (195)
                      ..+-|.|.+.|..+++++|  .|++.++++|-+.+...|..  +-...+                 +....|   ....+
T Consensus        89 tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~--G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~  166 (193)
T d1tg6a1          89 TWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR--GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIES  166 (193)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            9999999999999999999  59999999999988765543  111211                 111111   11222


Q ss_pred             HhhcCCCCCHHHHHhcCccccccCC
Q 041986          168 LGLTGATLSGEEMLFCGLATHYSLS  192 (195)
Q Consensus       168 l~l~g~~~~a~ea~~~Glv~~vv~~  192 (195)
                      .+-.-.-++|+||++.|+||+|+.+
T Consensus       167 ~~~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         167 AMERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HhccCccCCHHHHHHcCCCCEEccC
Confidence            3333344999999999999999854

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=98.23  E-value=2.4e-05  Score=59.55  Aligned_cols=139  Identities=12%  Similarity=0.146  Sum_probs=91.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-+.-+++......+.++.+.+..+ .+-+|.+.-     |+|..+.+-..        ....+...+..+ 
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~-~lPlV~l~~-----sgG~r~~eg~~--------~l~~~~~~~~~~-  155 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGID--------SLSGYGKMFFAN-  155 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHH--------HHHHHHHHHHHH-
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhc-CCCeEEEEe-----cCCCcccccce--------eccccceehHHH-
Confidence            444444444477889999999999999999875 466776665     55555543211        111222222222 


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCHH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSGE  178 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a~  178 (195)
                      .++.. .+|+|+++.|+|.||+.....+||++++.+++.+.+....           .         .+ ..+|+.++.+
T Consensus       156 ~~ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP~-----------v---------Ve-~~~ge~~~~e  213 (253)
T d1on3a1         156 VKLSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQ-----------V---------IK-SVTGEDVTAD  213 (253)
T ss_dssp             HHHTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHH-----------H---------HH-HHHCCCCCHH
T ss_pred             HHHhc-cceEEEEEecCcccceeeccchhhheeccccceEEecCcc-----------h---------hh-hhhCCcCChH
Confidence            33333 5999999999999999999999999999998887764221           1         11 1256777665


Q ss_pred             HH-------HhcCccccccCCCC
Q 041986          179 EM-------LFCGLATHYSLSAV  194 (195)
Q Consensus       179 ea-------~~~Glv~~vv~~~~  194 (195)
                      |.       .+.|.+|.++++++
T Consensus       214 elGga~~h~~~sG~iD~v~~~e~  236 (253)
T d1on3a1         214 ELGGAEAHMAISGNIHFVAEDDD  236 (253)
T ss_dssp             HHHSHHHHHHTTCCCSEEESSHH
T ss_pred             hccCHHHhhhccccceEEECCHH
Confidence            43       35699999998763

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.5e-05  Score=62.51  Aligned_cols=137  Identities=9%  Similarity=-0.032  Sum_probs=95.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      -+++++-...-.+.++.++. -++-+|-+--+.+ |-.|.+-++             ....+.+.+.+..+..+.+|+|+
T Consensus       130 G~~~p~~~rKa~r~~~~a~~-~~~Pii~~vDtpG-~~~g~~~E~-------------~g~~~~~a~~~~~~~~~~vP~i~  194 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAER-FKMPIITFIDTPG-AYPGVGAEE-------------RGQSEAIARNLREMSRLGVPVVC  194 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHH-TTCCEEEEEEESC-SCCSHHHHH-------------TTHHHHHHHHHHHHHTCSSCEEE
T ss_pred             ccccHHHHHHHHHHHHHHHH-cCcceEEEEecCc-ccCCccccc-------------ccHHHHHHHHHHHHHhCCCceEE
Confidence            35788888888888888876 3466665544222 233333332             23445666788889999999999


Q ss_pred             EEcchhcchhhHHhhhcCEEEEeCCeEEecCcccccccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHHhcCccccc
Q 041986          111 IMDGITMGGGAGIAVHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEMLFCGLATHY  189 (195)
Q Consensus       111 av~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~~~Glv~~v  189 (195)
                      .|-|.+.|||+.....+|.+++.++++++.      +.|.+.++.++...-- ..+.+.    ..+++++.+++|+||+|
T Consensus       195 vv~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeI  264 (316)
T d2f9ya1         195 TVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSI  264 (316)
T ss_dssp             EEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCC
T ss_pred             EEEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhc
Confidence            999999999998888999999999999983      2344433333332222 233332    45899999999999999


Q ss_pred             cCC
Q 041986          190 SLS  192 (195)
Q Consensus       190 v~~  192 (195)
                      +|.
T Consensus       265 I~E  267 (316)
T d2f9ya1         265 IPE  267 (316)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            964

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.12  E-value=5.1e-05  Score=57.90  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=90.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-+.-+++....+.+.++.+.+..+ .+-+|.+.-     |+|..+.+-....        ..... .....
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~-~lPlI~l~d-----sgGarm~e~~~~~--------~~~~~-~~~~~  154 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGIND-----SGGARIQEGVASL--------GAYGE-IFRRN  154 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHHHH--------HHHHH-HHHHH
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHc-CCceEEEec-----CCCcccCcccccc--------cchhH-HHHHH
Confidence            444555554577899999999999999999874 477888877     4455554322111        11111 11122


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeC-CeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATE-KTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~-~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                      .. ..-.+|+|+++.|+|.||+.....+||++++.+ .+.+.+...               +.     .+ ..+|+.++.
T Consensus       155 ~~-~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP---------------~v-----v~-~~~ge~i~~  212 (258)
T d1xnya1         155 TH-ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP---------------DV-----IK-TVTGEDVGF  212 (258)
T ss_dssp             HH-TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCH---------------HH-----HH-HHHCCCCCH
T ss_pred             HH-HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCH---------------HH-----HH-HHhcCccCh
Confidence            22 245699999999999999999898899888765 566655421               11     11 247788888


Q ss_pred             HHH-------HhcCccccccCCC
Q 041986          178 EEM-------LFCGLATHYSLSA  193 (195)
Q Consensus       178 ~ea-------~~~Glv~~vv~~~  193 (195)
                      +|+       ..-|++|.+++++
T Consensus       213 eelgga~~h~~~sG~~d~v~~de  235 (258)
T d1xnya1         213 EELGGARTHNSTSGVAHHMAGDE  235 (258)
T ss_dssp             HHHHBHHHHHHTSSCCSEEESSH
T ss_pred             HHhccHHHHHhcCCeeEEEeCCH
Confidence            775       3469999998764

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=7.4e-05  Score=56.92  Aligned_cols=138  Identities=14%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-+.-+++....+.+.++.+.+.++ .+-+|.+..     |+|..+.+-....        .... .+....
T Consensus        91 v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~-~lP~I~l~d-----sgGar~~eg~~~~--------~~~~-~~~~~~  155 (258)
T d2a7sa1          91 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVVSL--------GLYS-RIFRNN  155 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGCTHHH--------HHHH-HHHHHH
T ss_pred             EEEecccceEeCCccchhhhhHHHHHHHHHHhc-CCceEEEec-----cCCcccccccccc--------cchh-hHHHHH
Confidence            444444444477889999999999999999875 477777766     4555554311110        1111 111122


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeC-CeEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATE-KTVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~-~a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                       ......+|+|+++.|+|.||+.....+||++|+.+ .+.+.+...           ..         .+ ..+|+.++.
T Consensus       156 -~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~aGP-----------~v---------V~-~~~ge~~~~  213 (258)
T d2a7sa1         156 -ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGP-----------DV---------IK-TVTGEEVTM  213 (258)
T ss_dssp             -HHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSSCH-----------HH---------HH-HHHCCCCCH
T ss_pred             -HHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEccCh-----------hH---------HH-HhcCCccCh
Confidence             22346799999999999999999999999988755 455544311           11         11 137788887


Q ss_pred             HHH-------HhcCccccccCCC
Q 041986          178 EEM-------LFCGLATHYSLSA  193 (195)
Q Consensus       178 ~ea-------~~~Glv~~vv~~~  193 (195)
                      +|.       .+.|.+|.+++++
T Consensus       214 eeLGga~~h~~~sG~~D~v~~de  236 (258)
T d2a7sa1         214 EELGGAHTHMAKSGTAHYAASGE  236 (258)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSH
T ss_pred             hhccCHhHhhhhccccceEeCCH
Confidence            754       3569999999864

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=0.00011  Score=55.66  Aligned_cols=138  Identities=12%  Similarity=0.137  Sum_probs=89.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+..-..-+++....+.+.++.+.+..+ .+-+|.+..     |+|..+.+-....        ....+.+. ..
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~-~~P~I~~~d-----sgG~r~~e~~~~l--------~~~~~~~~-~~  152 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGIND-----SGGARIQEGVDAL--------AGYGEIFL-RN  152 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHHH--------HHHHHHHH-HH
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCcccccccccc--------ccchHHHH-HH
Confidence            444444444467889999999999999988764 466777776     4566554422111        11111111 12


Q ss_pred             HHHhhCCCcEEEEEcchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHhhhcchHHHHHHhhcCCCCCH
Q 041986           99 YLVATYSKPHVAIMDGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYLSRLPGHLGEYLGLTGATLSG  177 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l~g~~~~a  177 (195)
                       ....-.+|+|+++.|+|.||+.....+||++|+.++ +.+.+.-               |+.     .+ ..+|+.++.
T Consensus       153 -~~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~aG---------------p~v-----v~-~~~ge~~~~  210 (251)
T d1vrga1         153 -TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITG---------------PNV-----IK-AVTGEEISQ  210 (251)
T ss_dssp             -HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSC---------------HHH-----HH-HHHCCCCCH
T ss_pred             -HHHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEecC---------------chh-----hh-hhcCCcCCh
Confidence             223457999999999999999999999999988654 4433321               111     12 147788888


Q ss_pred             HHH-------HhcCccccccCCC
Q 041986          178 EEM-------LFCGLATHYSLSA  193 (195)
Q Consensus       178 ~ea-------~~~Glv~~vv~~~  193 (195)
                      +|.       .+-|.+|.+++++
T Consensus       211 eelGga~~h~~~sG~~D~v~~de  233 (251)
T d1vrga1         211 EDLGGAMVHNQKSGNAHFLADND  233 (251)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSH
T ss_pred             HHccchhhhhhccccceEEECCH
Confidence            775       3569999999875

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.90  E-value=6e-05  Score=58.33  Aligned_cols=151  Identities=12%  Similarity=0.079  Sum_probs=89.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcE
Q 041986           29 VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPH  108 (195)
Q Consensus        29 ~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~  108 (195)
                      +.-++++...+.+.++++.+... .+-+|.|.-     |+|..+..-......  ..   ...+.+.. ...+....+|+
T Consensus       116 ~gGs~~~~~~~K~~r~~~lA~~~-~lP~I~l~d-----s~Ga~~~~~~e~~~~--~~---~~g~~~~~-~a~ls~~~VP~  183 (287)
T d1pixa2         116 LAGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYPN--RR---GGGTPFFR-NAELNQLGIPV  183 (287)
T ss_dssp             TTTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSSS--TT---STTHHHHH-HHHHHHTTCCE
T ss_pred             ccccchhhHHHHHHHHHHhhhhc-CCCEEEEec-----CCcccCCcchhhccc--hh---hHHHHHHH-HHHHhhcCCCe
Confidence            56788999999999999988764 467777766     445554321111100  00   00111111 22456678999


Q ss_pred             EEEEcchhcchhhHHhhhcCEEEEeCCeEEecCccc--ccccCCCchhhHhhhcch-HHHHHHhhcCCCCCHHHHH--hc
Q 041986          109 VAIMDGITMGGGAGIAVHASYRLATEKTVFAMPEVL--IGFHPDVGSSYYLSRLPG-HLGEYLGLTGATLSGEEML--FC  183 (195)
Q Consensus       109 Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~pe~~--~G~~p~~g~~~~l~r~~g-~~a~~l~l~g~~~~a~ea~--~~  183 (195)
                      |++|.|+|.|||...+++||++++.+++.+.+....  -+..+..+.....+..+. ....+  .+-+.+.+.+.+  .-
T Consensus       184 Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge~--~~~eeLGGa~~H~~~s  261 (287)
T d1pixa2         184 IVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRT--GKTEPPGAVDIHYTET  261 (287)
T ss_dssp             EEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTT--CCCCCSSBHHHHTTTS
T ss_pred             EEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhccc--ccccccccHHHhhhhc
Confidence            999999999999888888888888888887774322  222222222222122221 11111  234555556554  45


Q ss_pred             CccccccCCC
Q 041986          184 GLATHYSLSA  193 (195)
Q Consensus       184 Glv~~vv~~~  193 (195)
                      |.+|.+++++
T Consensus       262 G~~d~v~~~e  271 (287)
T d1pixa2         262 GFMREVYASE  271 (287)
T ss_dssp             CCSCEEESSH
T ss_pred             ccceeecCCH
Confidence            9999999875

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=6.8e-05  Score=57.31  Aligned_cols=108  Identities=11%  Similarity=0.155  Sum_probs=74.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHH
Q 041986           19 SRTVILNRPHVLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFV   98 (195)
Q Consensus        19 v~~i~l~~p~~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~   98 (195)
                      |..+..+-.=..-+++....+.+.++.+.+.+. .+-.|.++.     |+|..+.+-...         ...........
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~-~lPlI~~~~-----sgG~r~~e~~~s---------l~~~~~~~~~~  162 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSA-----SGGARMQEALMS---------LMQMAKTSAAL  162 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEE-----ESSBCGGGTHHH---------HHHHHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHc-CCCeEEEec-----CCCcccccccch---------hhcchhHHHHH
Confidence            444444444477899999999999999999764 467777776     555555442211         11122233344


Q ss_pred             HHHhhCCCcEEEEEcchhcchhh-HHhhhcCEEEEeCCeEEecC
Q 041986           99 YLVATYSKPHVAIMDGITMGGGA-GIAVHASYRLATEKTVFAMP  141 (195)
Q Consensus        99 ~~l~~~~~p~Iaav~G~~~g~G~-~l~l~~D~~ia~~~a~~~~p  141 (195)
                      ..+....+|+|+++.|+|.||+. .+++++|++++.+.+.+.+.
T Consensus       163 ~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~a  206 (263)
T d2f9yb1         163 AKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA  206 (263)
T ss_dssp             HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS
T ss_pred             HHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeecc
Confidence            44556789999999999999875 57788888888888887764

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=0.0044  Score=47.11  Aligned_cols=157  Identities=11%  Similarity=0.116  Sum_probs=97.6

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +|...-|.-|+|. ..-+++.+..+...+.++.... .++-.|.|.-. ..|..|.+.+.             ....+..
T Consensus        68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~-~~iPlv~l~dt-pGf~~G~~~E~-------------~g~~~~g  132 (271)
T d2a7sa2          68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDC-FNIPIVMLVDV-PGFLPGTDQEY-------------NGIIRRG  132 (271)
T ss_dssp             SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH-------------HCHHHHH
T ss_pred             CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHH-hCCceEEeech-hhhhhhccHHH-------------hhHHHHH
Confidence            4444444455654 2358999999998888888765 56888877663 23444433322             3455677


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhhHHh----hhcCEEEEeCCeEEecCcccccccCCCchhhHhh-hcch-HH----
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGAGIA----VHASYRLATEKTVFAMPEVLIGFHPDVGSSYYLS-RLPG-HL----  164 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~----l~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~-r~~g-~~----  164 (195)
                      .+++.++..+..|.|+.+-|.+.|+|....    +.+|++++.+.+.++.       .++-++...+- +.+. ..    
T Consensus       133 a~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~  205 (271)
T d2a7sa2         133 AKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGE  205 (271)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSC
T ss_pred             HHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhccc
Confidence            789999999999999999999999875433    2467877777666655       32222222222 2211 00    


Q ss_pred             -------HHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 -------GEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 -------a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                             .......-+.-++-.+.+.|++|.|+++.+
T Consensus       206 ~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~d  242 (271)
T d2a7sa2         206 DIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSH  242 (271)
T ss_dssp             CTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGG
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHH
Confidence                   000111223346667888899999998754

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.10  E-value=0.0016  Score=49.46  Aligned_cols=157  Identities=13%  Similarity=0.061  Sum_probs=95.6

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +|...-|.-|+|. ...+++++..+...+-++.... .++-.|.|.-. ..|..|.+.+.             ....+..
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~-~~iPlv~l~D~-pGf~~G~~~E~-------------~g~i~~g  129 (264)
T d1on3a2          65 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PGFLPGVQQEY-------------GGIIRHG  129 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHH
T ss_pred             ecceEEEEeccchhcccccChHHHHHHHHHHHHHHh-cCCceEEEecc-ccccccHHHHH-------------HHHHHHH
Confidence            3433333345554 4678888888888888777765 46778777663 33444444332             3456677


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhhHHhh----hcCEEEEeCCeEEecCcccccccCCCchhhHhhhc-ch----HH-
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGAGIAV----HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSRL-PG----HL-  164 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l----~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r~-~g----~~-  164 (195)
                      .+++.++.++.+|.|+.+-|.+.|+|..-..    ..|++++.+.       .++|..++-|+...+-+. ..    .. 
T Consensus       130 a~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~-------A~~~vMg~Egaa~v~~~~el~a~~~~~~  202 (264)
T d1on3a2         130 AKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPS-------AEIAVMGAEGAANVIFRKEIKAADDPDA  202 (264)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHh-------hHhhhccHHHHHHHHHhhhhhhhhhhhh
Confidence            7899999999999999999999998764433    3455655554       455555444444333321 10    01 


Q ss_pred             --HHHH-hhcCCCCCHHHHHhcCccccccCCCC
Q 041986          165 --GEYL-GLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       165 --a~~l-~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                        ...+ -..-+.-++-.+.+.|++|+|+++.+
T Consensus       203 ~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~e  235 (264)
T d1on3a2         203 MRAEKIEEYQNAFNTPYVAAARGQVDDVIDPAD  235 (264)
T ss_dssp             HHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGG
T ss_pred             hhHHHHHHHHHHhcCHHHHHHcCCCCeeECHHH
Confidence              1111 01111235667888899999998754

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.032  Score=41.98  Aligned_cols=157  Identities=11%  Similarity=0.056  Sum_probs=96.7

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +|...-+.-|+|. ..-.++++..+...+.++.... .++-.|.|.-. ..|..|.+.+.             ....+..
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~-~~iPli~l~Dt-pGf~~G~~~E~-------------~g~~~~g  129 (264)
T d1vrga2          65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDT-PGYLPGVAQEH-------------GGIIRHG  129 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHH
T ss_pred             cCceEEEEeccccccccchhhhhHHHHHHHHHHHHH-hCCceEEEeec-ccccccHHHHH-------------HhHHHHH
Confidence            3433334445554 3467999999998888888775 46777766653 33444444332             3455677


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhhHHhh----hcCEEEEeCCeEEecCcccccccCCCchhhHhh-hcch----HHH
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGAGIAV----HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLS-RLPG----HLG  165 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l----~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~-r~~g----~~a  165 (195)
                      .+++.++..+.+|.|+.+-|.+.|+|..-..    .+|++++.+.+.++.       ..+-++...+. +..-    ...
T Consensus       130 a~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~  202 (264)
T d1vrga2         130 AKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEE  202 (264)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHH
Confidence            7899999999999999999999998763332    478877776666654       32222332222 2110    000


Q ss_pred             --HHH--hhcCCCCCHHHHHhcCccccccCCCC
Q 041986          166 --EYL--GLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       166 --~~l--~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                        .++  ...-+.-++-.+.+.|++|.|+++.+
T Consensus       203 ~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~d  235 (264)
T d1vrga2         203 TRRKLIEEYKQQFANPYIAASRGYVDMVIDPRE  235 (264)
T ss_dssp             HHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGG
T ss_pred             HHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHH
Confidence              110  01112236778889999999998754

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.11  E-value=0.053  Score=40.65  Aligned_cols=155  Identities=15%  Similarity=0.158  Sum_probs=94.9

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHH
Q 041986           16 RANSRTVILNRPH-VLNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTL   94 (195)
Q Consensus        16 ~~~v~~i~l~~p~-~~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   94 (195)
                      +|.-.-+.-|+|. ..-+++++......+.++.... .++-.|.|.-. ..|..|.+-+.             ....+..
T Consensus        63 ~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~-~~iPli~l~d~-pGf~~G~~~E~-------------~g~~~~g  127 (263)
T d1xnya2          63 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDA-FNVPVLTFVDV-PGFLPGVDQEH-------------DGIIRRG  127 (263)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHH
T ss_pred             ccceEEEEecccceecCCcchhhHHHHHHHHHHHHH-hCCceEEeecc-cccccchhHHH-------------HhHHHHH
Confidence            3433333344543 4468999999988888888776 45777766663 23444444332             3455677


Q ss_pred             HHHHHHHhhCCCcEEEEEcchhcchhhHHhh----hcCEEEEeCCeEEecCcccccccCCCchhhHhhh-cch-------
Q 041986           95 YSFVYLVATYSKPHVAIMDGITMGGGAGIAV----HASYRLATEKTVFAMPEVLIGFHPDVGSSYYLSR-LPG-------  162 (195)
Q Consensus        95 ~~l~~~l~~~~~p~Iaav~G~~~g~G~~l~l----~~D~~ia~~~a~~~~pe~~~G~~p~~g~~~~l~r-~~g-------  162 (195)
                      .+++.++.++.+|.|+.+-|.+.|+|.....    ..|++++.+++.++.       .++-++...+-+ ...       
T Consensus       128 a~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~  200 (263)
T d1xnya2         128 AKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAE  200 (263)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCS
T ss_pred             HHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchH
Confidence            7899999999999999999999998765432    357777776666655       322223332221 110       


Q ss_pred             ----HHHHHHhhcCCCCCHHHHHhcCccccccCCCC
Q 041986          163 ----HLGEYLGLTGATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       163 ----~~a~~l~l~g~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                          ....+.  .-+..++-.+.+.|++|.|+++.+
T Consensus       201 ~~~~~~~~~~--~~~~~~p~~aA~~g~iD~VIdP~d  234 (263)
T d1xnya2         201 ATRARLIQEY--EDALLNPYTAAERGYVDAVIMPSD  234 (263)
T ss_dssp             SSHHHHHHHH--HHHHSSSHHHHHHTSSSEECCGGG
T ss_pred             HHHHHHHHHH--HHHhcCHHHHHHcccCCcccCHHH
Confidence                000110  011134567778899999998754

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0031  Score=49.17  Aligned_cols=38  Identities=11%  Similarity=0.087  Sum_probs=34.8

Q ss_pred             CCCcEEEEEcchhcchhhHHhhhcCEEEEeCCeEEecC
Q 041986          104 YSKPHVAIMDGITMGGGAGIAVHASYRLATEKTVFAMP  141 (195)
Q Consensus       104 ~~~p~Iaav~G~~~g~G~~l~l~~D~~ia~~~a~~~~p  141 (195)
                      -.+|+|++|.|+|+|+|+.++..||++|+.+++.+.+.
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt  276 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT  276 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee
Confidence            57999999999999999999999999999998877664

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.53  E-value=0.16  Score=38.62  Aligned_cols=147  Identities=13%  Similarity=0.014  Sum_probs=89.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEE
Q 041986           30 LNALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHV  109 (195)
Q Consensus        30 ~N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~I  109 (195)
                      .-+++.+..+...+.++.... .++-+|.|.-. ..|-.|.+-+.             ....+...+++.++.++.+|.|
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~-~~iPlv~l~D~-pGf~~g~~~E~-------------~g~~r~ga~~~~a~~~~~VP~i  160 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAEK-------------AELLGLGQSLIYSIQTSHIPQF  160 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHHH-------------TTHHHHHHHHHHHHHTCCCCEE
T ss_pred             CCccCHHHHHHHHHHHHHHHH-cCCeEEEEEeC-CCcccchHHHh-------------hhHHHHHHHHHHHHHhhcceeE
Confidence            456888999999998888876 45777766542 33555544332             2455677788889999999999


Q ss_pred             EEEcchhcchhhHHhhhcCEEEEeCCeEE--ecCcccccccCCCchhhHh-hhcch-HH------------HHHHh-hcC
Q 041986          110 AIMDGITMGGGAGIAVHASYRLATEKTVF--AMPEVLIGFHPDVGSSYYL-SRLPG-HL------------GEYLG-LTG  172 (195)
Q Consensus       110 aav~G~~~g~G~~l~l~~D~~ia~~~a~~--~~pe~~~G~~p~~g~~~~l-~r~~g-~~------------a~~l~-l~g  172 (195)
                      +.+-|.+.|+|........+   .++..|  ..|..++|..++-++...+ .+.+. ..            -+++. -.-
T Consensus       161 svi~r~~~G~a~~am~g~~~---~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~  237 (299)
T d1pixa3         161 EITLRKGTAAAHYVLGGPQG---NDTNAFSIGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFY  237 (299)
T ss_dssp             EEECSEEETTHHHHTTCTTC---TTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             EEEecccccccccccccCcc---CcccceecCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            99999999988644332211   223223  3355566665444444333 22221 00            01110 011


Q ss_pred             CCCCHHHHHhcCccccccCCCC
Q 041986          173 ATLSGEEMLFCGLATHYSLSAV  194 (195)
Q Consensus       173 ~~~~a~ea~~~Glv~~vv~~~~  194 (195)
                      +.-++-.+.+.|++|.|+++.+
T Consensus       238 ~~~sp~~aAs~~~iD~IIDP~d  259 (299)
T d1pixa3         238 TKSRPKVCAELGLVDEIVDMNK  259 (299)
T ss_dssp             HTTSHHHHHHHTSSSEECCTTT
T ss_pred             HhcCHHHHHHhCCcCeeECHHH
Confidence            2356778889999999998764

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.52  E-value=0.26  Score=38.90  Aligned_cols=110  Identities=13%  Similarity=0.189  Sum_probs=66.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceeccccchhHHHhhhcccHHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 041986           31 NALNTSMVALLTKQYESWENNSGVDFVVIKGNGRSFCAGGDVVGAYRMLKEGRVEECKELFRTLYSFVYLVATYSKPHVA  110 (195)
Q Consensus        31 N~~~~~~~~~l~~~l~~~~~~~~~~~vvl~~~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia  110 (195)
                      -.+.++-...-.+.+..+.+..++-+|+|.- -+.|+.|-+-..             ....+....++.++.++..|+|+
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D-~pGF~~G~~~E~-------------~gilr~GA~iv~A~~~~~vP~i~  173 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILAN-WRGFSGGQRDMF-------------NEVLKYGSFIVDALVDYKQPIII  173 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCC-CCCBCC-------------------CTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeec-CCcccCcHHHHH-------------HHHHHHHHHHHHHHHhcCCCEEE
Confidence            3567788888888887776555666666654 266777765432             24455677888999999999999


Q ss_pred             EE--cchhcchhhHHhhhcCEEEEeCC-eEEecCcccccccCCCchhhHh
Q 041986          111 IM--DGITMGGGAGIAVHASYRLATEK-TVFAMPEVLIGFHPDVGSSYYL  157 (195)
Q Consensus       111 av--~G~~~g~G~~l~l~~D~~ia~~~-a~~~~pe~~~G~~p~~g~~~~l  157 (195)
                      .+  .|...||.+.+.   |-.+-.+. ..|..|..+.|..++-|+....
T Consensus       174 vI~~~g~~~GGa~vv~---~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~  220 (404)
T d1uyra2         174 YIPPTGELRGGSWVVV---DPTINADQMEMYADVNARAGVLEPQGMVGIK  220 (404)
T ss_dssp             EECTTCEEEHHHHHTT---CGGGGTTTEEEEEETTCEEESSCHHHHHHHH
T ss_pred             EEeCCcccchhhhhcc---cCccCCccceEEECCccccccCChhhhhhhe
Confidence            99  576666554332   11111111 2355566666776555555443