Citrus Sinensis ID: 041991

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAPLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLEPGSIVEDQAKANRTSASSDTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTALKLLLDFPDDDGMEFLDEQMGNISDFPNL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccHHHHHccccHHHHHHccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgkrktpfcdmekmkrgvwspeeDAKLIQYIKEhghgtwrhlpkqagilrsgkSCRLRWMNylrpdikrgpfapeEVATIIQLHGLFGNKWAAIashlpgrtdndikNLWNTRLKKHLQSMNHNlltyqspsssgpstvksdfpstrQMVKCASARVEaeaglpiesssiktggesvrveaeaplsiqsssllnsplvdkpysdiyLGLWnsivggsfrktarksgglsenaiSQTSlqmklepgsivedqakanrtsassdtapeqddsykpkvdmmavsdsigsneftdsSDTALKLLLdfpdddgmefldeqmgnisdfpnl
Flexible Loop (DISEMBL)
mgkrktpfcdmekmkrgvwspeeDAKLIQYIKEHghgtwrhlpkqagILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLtyqspsssgpstVKSDFPSTRQMVKCASARVeaeaglpiesssiktggeSVRVEAEAPlsiqsssllnsplVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLEPGSIVEDQAKanrtsassdtapeqddsykpkVDMMAVSDSIGSNEFTDSSDTALKLLLDFPDDDGMEFLDEqmgnisdfpnl
Low Complexity Region (SEG)
MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQspsssgpsTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAPLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLEPGSIVEDQAKANRTSASSDTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTALKLLLDFPDDDGMEFLDEQMGNISDFPNL
Disordered region (IsUnstruct)
*****************VW***EDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ*****************************************************************************LVDKPYSDIYLGLWNSIVGGSF********************************************************************************LLL************************
Disordered Region (DISOPRED)
*****TPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ*************************************************************************************IYLGLWN************************************************************************************ALKLLLDFPDDDGMEFLDEQMGN***FPNL
Disordered Region (DISEMBL)
MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQ************************SARVEAEAGLPIESSSIKTGGESVRVEAEAPLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKT********ENAISQTSLQMKLEPGSIVEDQA*******************KPKVDMMAVSDSIGSNEFTDSSDTALKLLLDFPDDDGMEFLDEQMGNISDFPNL
Disordered Region (DISPRO)
*****TPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQS*********************************************************************KPYSDIYLGLWNSIVGG*********************************************************************************KLLLDFPDDDGMEFLDEQMGNISDF*NL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAPLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLEPGSIVEDQAKANRTSASSDTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTALKLLLDFPDDDGMEFLDEQMGNISDFPNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
P20024	340	Myb-related protein Zm1 O	N/A	no	0.427	0.408	0.561	3e-43
Q7XBH4	257	Myb-related protein Myb4	no	no	0.356	0.451	0.637	3e-42
Q8GWP0	360	Transcription factor MYB3	no	no	0.384	0.347	0.595	2e-41
Q9SPG5	338	Transcription factor MYB7	no	no	0.550	0.529	0.470	9e-41
Q9S9K9	257	Transcription factor MYB3	no	no	0.427	0.540	0.517	9e-40
Q9SPG2	366	Transcription factor MYB2	no	no	0.433	0.385	0.531	1e-39
Q8LPH6	352	Transcription factor MYB8	no	no	0.36	0.332	0.579	2e-39
P81395	274	Myb-related protein 330 O	N/A	no	0.396	0.470	0.565	2e-39
P81393	232	Myb-related protein 308 O	N/A	no	0.387	0.543	0.555	3e-39
Q9SZP1	282	Transcription repressor M	no	no	0.350	0.404	0.596	3e-39

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 97/139 (69%)

Query: 1   MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWM 60
           MG+ + P C    + RG W+P+ED +LI YI++HGH  WR LPKQAG+LR GKSCRLRW+
Sbjct: 1   MGRGRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWI 60

Query: 61  NYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120
           NYLRPD+KRG F  EE   II+LHGL GNKW+ IA+ LPGRTDN+IKN+WNT LKK +  
Sbjct: 61  NYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQ 120

Query: 121 MNHNLLTYQSPSSSGPSTV 139
                    S  +  P+T 
Sbjct: 121 REKKKAGAGSGDAGTPATA 139

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.
Zea mays (taxid: 4577)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 92/116 (79%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           + P C+   +K+G W+PEED  L+ +I+ HGHG WR LPKQAG+LR GKSCRLRW+NYLR
Sbjct: 3   RAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120
           PDIKRG F+ EE  TII LH L GN+W+AIA+ LPGRTDN+IKN+W+T LKK L +
Sbjct: 63  PDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDA 118

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 96/126 (76%), Gaps = 1/126 (0%)

Query: 5   KTPFCDMEK-MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL 63
           ++P CD +K +K+G W PEED KL  YI E+G+G WR LPK AG+ R GKSCRLRWMNYL
Sbjct: 3   RSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62

Query: 64  RPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNH 123
           RPDI+RG F+  E +TI++LH L GNKW+ IA HLPGRTDN+IKN WNT ++K L  M  
Sbjct: 63  RPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGI 122

Query: 124 NLLTYQ 129
           + +T++
Sbjct: 123 DPVTHE 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG5|MYB76_ARATH Transcription factor MYB76 OS=Arabidopsis thaliana GN=MYB76 PE=1 SV=1

 Score =  167 bits (423), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 116/185 (62%), Gaps = 6/185 (3%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           K P+C  E +K+G W+ EED KLI YI +HG G WR +P++AG+ R GKSCRLRW NYL+
Sbjct: 3   KRPYCIGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPEKAGLKRCGKSCRLRWTNYLK 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PDIKRG F+ EE   II LH   GNKW+ IA HLP RTDN++KN WNT LKK L     +
Sbjct: 63  PDIKRGEFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEVKNYWNTHLKKRLIDDGID 122

Query: 125 LLTYQSPSSSGPSTV---KSDF-PSTRQMVKCASARVEAEAGLPIES--SSIKTGGESVR 178
            +T++  +SS P+ V   K DF   + Q    + +     A LP+ S  +S+K+   S  
Sbjct: 123 PVTHKPLASSNPNPVEPMKFDFQKKSNQDEHSSQSSSTTPASLPLSSNLNSVKSKISSGE 182

Query: 179 VEAEA 183
            + E+
Sbjct: 183 TQIES 187

Plays a role in determining the spatial distribution of aliphatic glucosinolates (GLSs) within the leaf, mostly short chained. Together with MYB28/HAG1 and MYB29/HAG3, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  164 bits (414), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 76/147 (51%), Positives = 99/147 (67%), Gaps = 8/147 (5%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           ++P C+   M +G W+ EED  L+ YI++HG G WR LP+ AG+ R GKSCRLRWMNYLR
Sbjct: 3   RSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSM--- 121
           PD+KRG F  EE   II+LH L GNKW+ IA  LPGRTDN+IKN WNT +K+ L S    
Sbjct: 63  PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGID 122

Query: 122 --NHNLLTYQSPSSSGPSTVKSDFPST 146
             +H L+   + S   PS++++D   T
Sbjct: 123 PNSHRLI---NESVVSPSSLQNDVVET 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 95/141 (67%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           + P C  E +K+G W+ EED KLI YI +HG G WR +P++AG+ R GKSCRLRW NYL+
Sbjct: 3   RKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNYLK 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           P+IKRG F+ EE   II LH   GNKW+ IA HLP RTDN+IKN WNT LKK L     +
Sbjct: 63  PEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQGID 122

Query: 125 LLTYQSPSSSGPSTVKSDFPS 145
            +T++  +SS   TV  +  S
Sbjct: 123 PVTHKPLASSSNPTVDENLNS 143

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 90/119 (75%), Gaps = 2/119 (1%)

Query: 1   MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWM 60
           MG+     C  +K+++G+WSPEED KL+ YI  HGHG W  +PK AG+ R GKSCRLRW+
Sbjct: 1   MGRHSC--CFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWI 58

Query: 61  NYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ 119
           NYLRPD+KRG F+ +E + II+LH   GN+W+ IA+ LPGRTDN+IKN WN+ LKK L+
Sbjct: 59  NYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLR 117

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 92/129 (71%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           ++P C+     +G W+ EED +LI YI+ HG G WR LPK AG+LR GKSCRLRW+NYLR
Sbjct: 3   RSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PD+KRG F  EE   II+LH L GNKW+ IA  LPGRTDN+IKN WNT +K+ L S   +
Sbjct: 63  PDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGID 122

Query: 125 LLTYQSPSS 133
             T++S +S
Sbjct: 123 PQTHRSLNS 131

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 90/126 (71%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           ++P C+     +G W+ EED +L+ YI+ HG G WR LPK AG+LR GKSCRLRW+NYLR
Sbjct: 3   RSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PD+KRG F  EE   II+LH L GNKW+ IA  LPGRTDN+IKN WNT +++ L S   +
Sbjct: 63  PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGID 122

Query: 125 LLTYQS 130
             T++S
Sbjct: 123 PTTHRS 128

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 84/114 (73%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           ++P C+     +G W+ EED +L+ YIK HG G WR LPK AG+LR GKSCRLRW+NYLR
Sbjct: 3   RSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
           PD+KRG F  EE   II+LH L GNKW+ IA  LPGRTDN+IKN WNT +++ L
Sbjct: 63  PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
118487252	298	unknown [Populus trichocarpa]	0.88	0.959	0.525	5e-80
224134821	296	predicted protein [Populus trichocarpa]	0.88	0.966	0.506	8e-77
224122366	255	predicted protein [Populus trichocarpa]	0.772	0.984	0.530	3e-67
255539465	277	r2r3-myb transcription factor, putative	0.766	0.898	0.533	5e-66
356574485	309	PREDICTED: transcription factor MYB23-li	0.901	0.948	0.474	2e-65
255541536	308	r2r3-myb transcription factor, putative	0.88	0.928	0.460	2e-65
356534145	309	PREDICTED: transcription factor MYB3-lik	0.901	0.948	0.471	5e-65
147785186	302	hypothetical protein VITISV_000834 [Viti	0.892	0.960	0.450	6e-65
225454140	302	PREDICTED: myb-related protein 306 isofo	0.892	0.960	0.450	6e-65
225470167	296	PREDICTED: transcription repressor MYB6	0.873	0.959	0.476	8e-65

>gi|118487252|gb|ABK95454.1| unknown [Populus trichocarpa]

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 165/314 (52%), Positives = 201/314 (64%), Gaps = 28/314 (8%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           + P CD +++K+G W+PEED  L+QYI++HG G WR LPK AG+LR GKSCRLRW NYLR
Sbjct: 3   RVPCCDKDEVKKGPWTPEEDQLLVQYIQKHGLGCWRSLPKNAGLLRCGKSCRLRWTNYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PDIKRGPF+P E ATI+ LHG+ GNKWA +AS LPGRTDN+IKN WNT LKK L S+   
Sbjct: 63  PDIKRGPFSPAEEATIVHLHGMLGNKWAYMASQLPGRTDNEIKNFWNTHLKKRLTSIGPK 122

Query: 125 LLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAP 184
           L   QS SSS P  +K   PS R MV+  SARVEAEA L  +S  IK            P
Sbjct: 123 LQINQSSSSSEPINIKCKSPSARHMVQWESARVEAEARLSKQSLLIK------------P 170

Query: 185 LSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLEP 244
            S   S         +P  DI+L LW S VG +FR T  K G   E+ +S T   +K E 
Sbjct: 171 TSTAKS---------RP--DIFLQLWKSEVGETFRITEEKYGKTCESLVSDTPPSIKNE- 218

Query: 245 GSIVEDQA---KANRTSASSDTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTALKLLL 301
            S+  D     K  +T+   DT  EQ+D+ KP  ++M VSDSIGSNEF DS+DTALKLLL
Sbjct: 219 -SVFLDDTVSPKPFKTTTFMDTTQEQEDTCKPNEEVMTVSDSIGSNEFADSTDTALKLLL 277

Query: 302 DFPDDDGMEFLDEQ 315
           DFP  + MEF+ E+
Sbjct: 278 DFPGGNDMEFIGEE 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134821|ref|XP_002321913.1| predicted protein [Populus trichocarpa] gi|222868909|gb|EEF06040.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (750), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 159/314 (50%), Positives = 205/314 (65%), Gaps = 28/314 (8%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           + P CD + +K+G W+PEED  L+QYI+++G G+W  LPK+AG+ R GKSCRLRW NYLR
Sbjct: 3   RGPCCDQDGVKKGPWTPEEDHLLVQYIQKNGFGSWHSLPKKAGLFRCGKSCRLRWTNYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PDIKRG F+P E ATII LHG+ GN+WA IAS LPGRTDN+IKN WN+ LKK L S+   
Sbjct: 63  PDIKRGRFSPAEEATIIHLHGILGNRWAHIASQLPGRTDNEIKNFWNSHLKKRLASIGPK 122

Query: 125 LLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAP 184
           L   QS SSS P  +  + PS   MV+  SARVEAEA L ++S  +K             
Sbjct: 123 LQINQS-SSSNPINIMCESPSC-HMVQWESARVEAEARLSMQSLLVK------------- 167

Query: 185 LSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLEP 244
               +S++       K + DI++ LWNS VG +FR    K     E+ +S     +K+E 
Sbjct: 168 ---HTSTV-------KGHPDIFMQLWNSEVGEAFRNVKGKDVETCESLVSDAHPCVKIE- 216

Query: 245 GSIVEDQAKA--NRTSASSDTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTALKLLLD 302
             +++D A A  N+TS S DT  EQ+D+ KP  D+M+VSDSIGSNEF DSSDTALKLLLD
Sbjct: 217 SVLLDDTAPATPNKTSTSIDTTQEQEDTCKPSADVMSVSDSIGSNEFADSSDTALKLLLD 276

Query: 303 FPDDDGMEFLDEQM 316
           FP  +GMEF+ E +
Sbjct: 277 FPGGNGMEFIRENL 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122366|ref|XP_002318817.1| predicted protein [Populus trichocarpa] gi|222859490|gb|EEE97037.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 148/279 (53%), Positives = 174/279 (62%), Gaps = 28/279 (10%)

Query: 37  GTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIAS 96
           G WR LPK AG+LR GKSCRLRW NYLRPDIKRGPF+P E ATI+ LHG+ GNKWA +AS
Sbjct: 1   GCWRSLPKNAGLLRCGKSCRLRWTNYLRPDIKRGPFSPAEEATIVHLHGMLGNKWAYMAS 60

Query: 97  HLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQSPSSSGPSTVKSDFPSTRQMVKCASAR 156
            LPGRTDN+IKN WNT LKK L S+   L   QS SSS P  +K   PS R MV+  SAR
Sbjct: 61  QLPGRTDNEIKNFWNTHLKKRLTSIGPKLQINQSSSSSEPINIKCKSPSARHMVQWESAR 120

Query: 157 VEAEAGLPIESSSIKTGGESVRVEAEAPLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGG 216
           VEAEA L  +S  IK            P S   S         +P  DI+L LW S VG 
Sbjct: 121 VEAEARLSKQSLLIK------------PTSTAKS---------RP--DIFLQLWKSEVGE 157

Query: 217 SFRKTARKSGGLSENAISQTSLQMKLEPGSIVEDQA---KANRTSASSDTAPEQDDSYKP 273
           +FR T  K G   E+ +S T   +K E  S+  D     K  +T+   DT  EQ+D+ KP
Sbjct: 158 TFRITEEKYGKTCESLVSDTPPSIKNE--SVFLDDTVSPKPFKTTTFMDTTQEQEDTCKP 215

Query: 274 KVDMMAVSDSIGSNEFTDSSDTALKLLLDFPDDDGMEFL 312
             ++M VSDSIGSNEF DS+DTALKLLLDFP  + MEF+
Sbjct: 216 NEEVMTVSDSIGSNEFADSTDTALKLLLDFPGGNDMEFI 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539465|ref|XP_002510797.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223549912|gb|EEF51399.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 150/281 (53%), Positives = 175/281 (62%), Gaps = 32/281 (11%)

Query: 48  ILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIK 107
           +LR GKSCRLRW NYLRPDIKRGPFAPEE ATIIQLHG+ GNKWAAIAS LPGRTDN+IK
Sbjct: 23  LLRCGKSCRLRWTNYLRPDIKRGPFAPEEEATIIQLHGMLGNKWAAIASKLPGRTDNEIK 82

Query: 108 NLWNTRLKKHLQSMNHNLLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIES 167
           N WNT LKK L     NL   QS S S P  VK +  +TR MV+  SARVEAEA L +ES
Sbjct: 83  NFWNTHLKKRL-----NLKLRQSCSPSQPINVKCESSTTRHMVQWESARVEAEARLSMES 137

Query: 168 SSIKTGGESVRVEAEAPLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGG 227
             + +                           K  +D +L LW S VG SFR   +K G 
Sbjct: 138 LLVNSSSSV-----------------------KIENDYFLQLWKSEVGESFRNLKQKDGE 174

Query: 228 LSENAISQTSLQMKLEPGSIVED---QAKANRTSASSDTAPEQDDSYKPKVDMMAVSDSI 284
            SE+ ISQ S   K   GS+  +   Q  + +TS S+DT+ EQ+D YKP + +M  SDSI
Sbjct: 175 ASESPISQNSSLTKNGSGSVDNEKKVQMTSTKTSTSNDTSHEQED-YKPNIAIMTYSDSI 233

Query: 285 GSNEFTDSSDTALKLLLDFPDDDGMEFLDEQMGNISDFPNL 325
            SNEFTDSSDTALKLLLD P  + MEFL+ Q  + S F NL
Sbjct: 234 NSNEFTDSSDTALKLLLDVPGGNDMEFLEGQTESFSSFLNL 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574485|ref|XP_003555377.1| PREDICTED: transcription factor MYB23-like [Glycine max]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/329 (47%), Positives = 192/329 (58%), Gaps = 36/329 (10%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           K P C+   ++RG W+PEED  L+ YI++HGHG+WR LPK AG+LR GKSCRLRW+NYLR
Sbjct: 3   KAPCCEKHGVRRGAWTPEEDQALVDYIQKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           P IKRGPF  EE +TI+QLHG+ GN+WA+IAS LPGRTDN+IKN WNT LKK L    H+
Sbjct: 63  PGIKRGPFTSEEESTIVQLHGMLGNRWASIASQLPGRTDNEIKNFWNTHLKKRLLRSCHS 122

Query: 125 LLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAP 184
               Q       S VKS+ PSTR MV+  S RVE EA L +E                  
Sbjct: 123 QRAKQLCVIPDQSIVKSESPSTRHMVQWESVRVETEARLSLE------------------ 164

Query: 185 LSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKT-ARKSGGLSENAISQTSLQMKLE 243
                S++LNS    K   D +L LW+S VG SFR    ++ G +S++ ISQ S   KLE
Sbjct: 165 -----STMLNSWPTSKTCPDHFLQLWHSEVGKSFRMIKGKEEGVVSQSLISQPSSSSKLE 219

Query: 244 PGSIVEDQAKANRTSASS-------DTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTA 296
             S V  Q K N  ++S            EQ  SYKPK+D        G+ EF D+SD+A
Sbjct: 220 SCSDVSLQVKTNTGTSSCIPKLEDVSMVHEQTSSYKPKLDDDTAGSDSGNYEFLDTSDSA 279

Query: 297 LKLLLDFPDDDGMEFLDEQMGNISDFPNL 325
           LK LL  PD D M FL    G+   F NL
Sbjct: 280 LKHLLHMPDSD-MGFL----GHNDHFQNL 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541536|ref|XP_002511832.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223549012|gb|EEF50501.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 146/317 (46%), Positives = 182/317 (57%), Gaps = 31/317 (9%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           +TP CD + +K+G W+PEED  L+ YIK++GHG+WR LPK AG+LR GKSCRLRW NYLR
Sbjct: 3   RTPCCDKKGLKKGPWTPEEDEVLVSYIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PDIKRGPF  EE   +IQLHG+ GN+WAAIAS LPGRTDN+IKNLWNT LKK L  M  +
Sbjct: 63  PDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLLCMGLD 122

Query: 125 LLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAP 184
             T++  +S GP       P+TR M +  SAR+EAEA L  E                  
Sbjct: 123 PQTHEPFTSCGPYITAPASPATRHMAQWESARLEAEARLSRE------------------ 164

Query: 185 LSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLEP 244
                SSL N P   K   D +L +WNS VG SFRK  R      ++  S +      + 
Sbjct: 165 -----SSLFNPPTPKKTDCDYFLRIWNSEVGESFRKFHRGDKASCQSPASASQASSSTKY 219

Query: 245 GSI-------VEDQAKANRTSASSDTAPEQDDSYKPKV-DMMAVSDSIGSNEFTDSSDTA 296
           GS+       +      + T  S      +  S K  V DM A SDS  S E  DSSD+ 
Sbjct: 220 GSVSALTTVDISPNIAGSSTPPSDQIEDTECKSCKSYVEDMNAGSDSSSSIELEDSSDST 279

Query: 297 LKLLLDFPDDDGMEFLD 313
           L+LLLDFP ++ M FL+
Sbjct: 280 LQLLLDFPINNDMSFLE 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534145|ref|XP_003535618.1| PREDICTED: transcription factor MYB3-like [Glycine max]

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 155/329 (47%), Positives = 191/329 (58%), Gaps = 36/329 (10%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           K P C+   ++RG W+PEED  L+ YI +HGHG+WR LPK AG+LR GKSCRLRW+NYLR
Sbjct: 3   KAPCCEKHGVRRGAWTPEEDQSLVDYIHKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           P IKRGPF  EE +TI+QLHG+ GN+WA+IAS LPGRTDN+IKN WNT LKK L    ++
Sbjct: 63  PGIKRGPFTSEEESTIVQLHGMLGNRWASIASQLPGRTDNEIKNYWNTHLKKRLLRSCYS 122

Query: 125 LLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAP 184
               Q      P+ VKS+ PSTR MV+  S RVEAEA L +E                  
Sbjct: 123 QRAKQLCVIPDPTIVKSESPSTRHMVQWESVRVEAEARLSME------------------ 164

Query: 185 LSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKT-ARKSGGLSENAISQTSLQMKLE 243
                S++LNS    K   D +L LWNS VG SFR    ++ G +S++ +SQ S   KLE
Sbjct: 165 -----STMLNSWPTSKTCPDHFLQLWNSEVGKSFRMIKGKEEGVVSQSLVSQPSSSSKLE 219

Query: 244 PGSIVEDQAKANRTSASS-------DTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTA 296
             S V  Q K N  ++S            EQ  SYKPK+D        G+ EF D+SD+ 
Sbjct: 220 SCSDVSLQVKNNTGNSSCIPKLEDVSMVHEQTSSYKPKLDDDTAGSDSGNYEFLDTSDST 279

Query: 297 LKLLLDFPDDDGMEFLDEQMGNISDFPNL 325
           LK LL  PD D M FL    G    F NL
Sbjct: 280 LKHLLHMPDSD-MGFL----GQNDHFQNL 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785186|emb|CAN75438.1| hypothetical protein VITISV_000834 [Vitis vinifera]

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 145/322 (45%), Positives = 182/322 (56%), Gaps = 32/322 (9%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           +TP CD   +K+G W+PEED  L+ YI ++GHG+WR LPK AG+LR GKSCRLRW NYLR
Sbjct: 3   RTPCCDKRGLKKGPWTPEEDQILVDYINKNGHGSWRSLPKNAGLLRCGKSCRLRWTNYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PDIKRGPF  +E   +IQLHG+ GN+WAAIAS LPGRTDN+IKNLWNT LKK L  M  +
Sbjct: 63  PDIKRGPFTTDEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLLGMGLD 122

Query: 125 LLTYQ-SPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEA 183
             T++ S +S GP       PSTR M +  SAR+EAEA                R+  E+
Sbjct: 123 PQTHEPSATSCGPIAKPPSSPSTRHMAQWESARLEAEA----------------RLSRES 166

Query: 184 PLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLE 243
            LS      L         SD +L LWNS VG SFR   +K     ++ +SQ S   K  
Sbjct: 167 LLSNPPPPPLGR----NNDSDYFLRLWNSEVGESFRNKGQKP--XCQSPVSQASSSTKCG 220

Query: 244 PGSIVEDQAKANRTSASSDTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTALKLLLDF 303
             S V         S   +  P+         + MA SD   +NE  DSSDTAL+LL DF
Sbjct: 221 SVSGVTTMETCPTVSNKIEDTPQ---------NAMAGSDCSSTNELEDSSDTALQLLFDF 271

Query: 304 PDDDGMEFLDEQMGNISDFPNL 325
           P ++ M FL+  +     FP +
Sbjct: 272 PVNNDMSFLEGNLDTYPTFPAM 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454140|ref|XP_002270529.1| PREDICTED: myb-related protein 306 isoform 1 [Vitis vinifera] gi|297745245|emb|CBI40325.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 145/322 (45%), Positives = 182/322 (56%), Gaps = 32/322 (9%)

Query: 5   KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
           +TP CD   +K+G W+PEED  L+ YI ++GHG+WR LPK AG+LR GKSCRLRW NYLR
Sbjct: 3   RTPCCDKRGLKKGPWTPEEDQILVDYINKNGHGSWRSLPKNAGLLRCGKSCRLRWTNYLR 62

Query: 65  PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PDIKRGPF  +E   +IQLHG+ GN+WAAIAS LPGRTDN+IKNLWNT LKK L  M  +
Sbjct: 63  PDIKRGPFTTDEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLLGMGLD 122

Query: 125 LLTYQ-SPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEA 183
             T++ S +S GP       PSTR M +  SAR+EAEA                R+  E+
Sbjct: 123 PQTHEPSATSCGPIAKPPSSPSTRHMAQWESARLEAEA----------------RLSRES 166

Query: 184 PLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKLE 243
            LS      L         SD +L LWNS VG SFR   +K     ++ +SQ S   K  
Sbjct: 167 LLSNPPPPPLGR----NNDSDYFLRLWNSEVGESFRNKGQKP--TCQSPVSQASSSTKCG 220

Query: 244 PGSIVEDQAKANRTSASSDTAPEQDDSYKPKVDMMAVSDSIGSNEFTDSSDTALKLLLDF 303
             S V         S   +  P+         + MA SD   +NE  DSSDTAL+LL DF
Sbjct: 221 SVSGVTTMETCPTVSNKIEDTPQ---------NAMAGSDCSSTNELEDSSDTALQLLFDF 271

Query: 304 PDDDGMEFLDEQMGNISDFPNL 325
           P ++ M FL+  +     FP +
Sbjct: 272 PVNNDMSFLEGNLDTYPTFPAM 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470167|ref|XP_002267986.1| PREDICTED: transcription repressor MYB6 [Vitis vinifera]

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 152/319 (47%), Positives = 184/319 (57%), Gaps = 35/319 (10%)

Query: 1   MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWM 60
           MG++  P CD   +KRG W+PEED  LI YIK++GHG WR LPK AG+LR GKSCRLRW 
Sbjct: 1   MGRK--PCCDKHGVKRGAWTPEEDEILIDYIKKNGHGRWRSLPKHAGLLRCGKSCRLRWT 58

Query: 61  NYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120
           NYLRPDIKRGPF PEE   IIQLH + GN+WAAIAS +PGRTDN+IKN WNT LKK L  
Sbjct: 59  NYLRPDIKRGPFTPEEETAIIQLHSMLGNRWAAIASKIPGRTDNEIKNFWNTHLKKRLLG 118

Query: 121 MNHNLLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVE 180
            NH     Q  S   PS  +S  PSTR M +  SARVEAEA L +E              
Sbjct: 119 -NHQNQQTQWSSVLEPSNAQSKSPSTRHMAQWESARVEAEARLSME-------------- 163

Query: 181 AEAPLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQM 240
                    S LL    + K  SD +L +WNS VG SFRK   + G   ++ IS  SL  
Sbjct: 164 ---------SLLLRPASMSKNDSDYFLRIWNSEVGDSFRKKNGQYGVACQSPIS--SLST 212

Query: 241 KLEPG-SIVEDQAKANRTSASSDTAPEQDDSYKPKV------DMMAVSDSIGSNEFTDSS 293
           K   G S+   +  A  ++++S T   +  + +PK       DMM  SD   S E   SS
Sbjct: 213 KFRSGSSLTMQRGPAGTSTSTSTTITSKQKNMEPKSHTAYAQDMMTGSDDSSSYELGYSS 272

Query: 294 DTALKLLLDFPDDDGMEFL 312
           D + +LLLDF  D+ M FL
Sbjct: 273 DISFRLLLDFQGDNDMGFL 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2098906	299	MYB17 "myb domain protein 17"	0.578	0.628	0.526	7.7e-48
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.498	0.417	0.560	1.6e-47
TAIR|locus:2150891	326	MYB16 "myb domain protein 16"	0.501	0.5	0.533	9.7e-46
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.384	0.389	0.624	2.5e-42
TAIR|locus:2032860	274	MYB58 "myb domain protein 58"	0.827	0.981	0.370	4e-42
TAIR|locus:2207330	294	MYB63 "myb domain protein 63"	0.363	0.401	0.669	4e-42
TAIR|locus:2171845	310	MYB53 "myb domain protein 53"	0.892	0.935	0.371	5.2e-42
TAIR|locus:2195528	370	AtMYB103 "myb domain protein 1	0.572	0.502	0.436	8.4e-42
TAIR|locus:2023951	365	MYB93 "myb domain protein 93"	0.384	0.342	0.624	1.7e-41
TAIR|locus:2145402	334	MYB92 "myb domain protein 92"	0.766	0.745	0.386	3.6e-41

TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 100/190 (52%), Positives = 125/190 (65%)

Query:     5 KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
             +TP CD   +K+G W+PEED  L+ +IK++GHG+WR LPK AG+LR GKSCRLRW NYLR
Sbjct:     3 RTPCCDKIGLKKGPWTPEEDEVLVAHIKKNGHGSWRTLPKLAGLLRCGKSCRLRWTNYLR 62

Query:    65 PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
             PDIKRGPF  +E   +IQLH + GN+WAAIA+ LPGRTDN+IKNLWNT LKK L SM  +
Sbjct:    63 PDIKRGPFTADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKRLLSMGLD 122

Query:   125 LLTYQXXXXXXXXTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGES--VRVEAE 182
               T++              P+TR M +  SARVEAEA L  ES        S  V+ E +
Sbjct:   123 PRTHEPLPSYGLAKQAPSSPTTRHMAQWESARVEAEARLSRESMLFSPSFYSGVVKTECD 182

Query:   183 APLSIQSSSL 192
               L I +S +
Sbjct:   183 HFLRIWNSEI 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048443 "stamen development" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 92/164 (56%), Positives = 115/164 (70%)

Query:     6 TPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRP 65
             +P CD   +K+G W+PEED KL+ YI+EHGHG+WR LP++AG+ R GKSCRLRW NYLRP
Sbjct:    47 SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRP 106

Query:    66 DIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNL 125
             DIKRG F  +E  TIIQLH L GN+W+AIA+HLP RTDN+IKN WNT LKK L  M  + 
Sbjct:   107 DIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDP 166

Query:   126 LTYQXXXXX-XXXTVKSDFPST-RQMVKCASARVEAEAGLPIES 167
             +T++         T +S   +T   M +  SAR+EAEA L  ES
Sbjct:   167 VTHKHKNETLSSSTGQSKNAATLSHMAQWESARLEAEARLARES 210

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 88/165 (53%), Positives = 113/165 (68%)

Query:     5 KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
             ++P CD   +K+G W+PEED KL+ YI+EHGHG+WR LP++AG+ R GKSCRLRW NYLR
Sbjct:     3 RSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNYLR 62

Query:    65 PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
             PDIKRG F  +E  TIIQLH L GN+W+AIA+HLP RTDN+IKN WNT LKK L  M  +
Sbjct:    63 PDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGID 122

Query:   125 LLTYQXXXXXXXXTV--KSDFPSTRQMVKCASARVEAEAGLPIES 167
              +T++        ++    +        +  SAR+EAEA L  ES
Sbjct:   123 PVTHKPKNETPLSSLGLSKNAAILSHTAQWESARLEAEARLARES 167

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 78/125 (62%), Positives = 97/125 (77%)

Query:     5 KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
             ++P CD   +K+G W+PEED KLI +I++HGHG+WR LPKQAG+ R GKSCRLRW NYLR
Sbjct:     3 RSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLR 62

Query:    65 PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
             PDIKRG F  EE  TII LH L GNKW++IA HLPGRTDN+IKN WNT ++K L  M  +
Sbjct:    63 PDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMGID 122

Query:   125 LLTYQ 129
              +T++
Sbjct:   123 PVTHR 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2032860 MYB58 "myb domain protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 104/281 (37%), Positives = 154/281 (54%)

Query:     1 MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWM 60
             MGK + P CD  K+KRG WS +ED KLI +I ++GH  WR LPKQAG+LR GKSCRLRW+
Sbjct:     1 MGKGRAPCCDKTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLLRCGKSCRLRWI 60

Query:    61 NYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120
             NYLRPD+KRG F+ EE  TII+LH  FGNKW+ IAS LPGRTDN+IKN+W+T LKK L S
Sbjct:    61 NYLRPDVKRGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIKNVWHTHLKKRLSS 120

Query:   121 MNHNLLTYQXXXXXXXXTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVE 180
               +                 S   S    +  A + + ++     + + I    E +   
Sbjct:   121 ETNLNADEAGSKGSLNEEENSQESSPNASMSFAGSNISSKD----DDAQISQMFEHILTY 176

Query:   181 AEAPLSIQSSSLLNSP-LVDKPYSDIYLGLWNSIVGG-SFRKTARKSGGLSE-NAISQTS 237
             +E    +Q    ++ P L++ P+ D+   +W+ I G  SF++   ++   SE + + +  
Sbjct:   177 SEFTGMLQE---VDKPELLEMPF-DLDPDIWSFIDGSDSFQQPENRALQESEEDEVDKWF 232

Query:   238 LQMKLEPGSIVEDQAKANRTSASSDTAPEQDDSYKPKVDMM 278
               ++ E G + E+  +  +      T  E   S     +++
Sbjct:   233 KHLESELG-LEENDNQQQQQQHKQGTEDEHSSSLLESYELL 272

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2207330 MYB63 "myb domain protein 63" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 79/118 (66%), Positives = 94/118 (79%)

Query:     1 MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWM 60
             MGK + P CD  K+KRG WSPEED KLI +I++ GH  WR LPKQ+G+LR GKSCRLRW+
Sbjct:     1 MGKGRAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWI 60

Query:    61 NYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
             NYLRPD+KRG F  EE  TII+LH  +GNKW+ IAS LPGRTDN+IKN+W+T LKK L
Sbjct:    61 NYLRPDLKRGNFTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKRL 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2171845 MYB53 "myb domain protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 117/315 (37%), Positives = 164/315 (52%)

Query:     5 KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
             ++P  D   +K+G W PEED KLI YI +HGH +W  LPK AG+ R GKSCRLRW NYLR
Sbjct:     3 RSPSSDETGLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYLR 62

Query:    65 PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
             PDIKRG F+ EE  TI+ LH + GNKW+ IASHLPGRTDN+IKN WNT LKK L  M  +
Sbjct:    63 PDIKRGKFSAEEEETILNLHAVLGNKWSMIASHLPGRTDNEIKNFWNTHLKKKLIQMGFD 122

Query:   125 LLTYQXXXXXXXXTVKSDFPSTRQMVKCASAR--VEAEAGLPIESSSIKTGGESVRVEAE 182
              +T+Q             F S  Q++  ++ R  V+ +   P+E  ++     +++ E  
Sbjct:   123 PMTHQPRTDDI-------FSSLSQLMSLSNLRGLVDLQQQFPMEDQALL----NLQTEM- 170

Query:   183 APLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSLQMKL 242
             A L +    L  SP      ++I   + N ++  +   +    G LS +   Q      L
Sbjct:   171 AKLQLFQYLLQPSP-APMSINNINPNILNLLIKENSVTSNIDLGFLSSHL--QDFNNNNL 227

Query:   243 EPGSIVEDQAKANRTSAS-SDTAPEQDDSYKPKVDMMAVS-DSIGSNEFTDSSDTALKLL 300
                  ++D   +  TS       P  + +  P  D  A S D  GSN+ + S D  + + 
Sbjct:   228 PSLKTLDDNHFSQNTSPIWLHEPPSLNQTMLPTHDPCAQSVDGFGSNQASSSHDQEVAVT 287

Query:   301 --LDFPD----DDGM 309
               +D+PD    DD M
Sbjct:   288 DSVDWPDHHLFDDSM 302

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2195528 AtMYB103 "myb domain protein 103" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 82/188 (43%), Positives = 118/188 (62%)

Query:     9 CDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIK 68
             C+ +K+KRG+WSPEED KLI+YI  HG+G W  +P++AG+ R GKSCRLRW+NYLRPDI+
Sbjct:     7 CNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIR 66

Query:    69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTY 128
             RG F+PEE   II LHG+ GN+WA IASHLPGRTDN+IKN WN+ +KK ++  +H+   +
Sbjct:    67 RGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPHHHYSRH 126

Query:   129 QXXXXXXXXTVKSDFPSTRQMVKCASARVEAEAGLPIESSSIKTGGESVRVEAEAPLSIQ 188
             Q        T+ +D  S    ++ ++        L  +  +      +   + E  + IQ
Sbjct:   127 QPSVTTV--TLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTNDQETNIKIQ 184

Query:   189 SSSLLNSP 196
              +   + P
Sbjct:   185 ETFFSHKP 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:1901430 "positive regulation of syringal lignin biosynthetic process" evidence=IMP

TAIR|locus:2023951 MYB93 "myb domain protein 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 78/125 (62%), Positives = 95/125 (76%)

Query:     5 KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
             ++P CD   +K+G W+PEED KLI YI +HGHG+WR LPK A + R GKSCRLRW NYLR
Sbjct:     3 RSPCCDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNYLR 62

Query:    65 PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
             PDIKRG F+ EE  TI+ LH + GNKW+AIA+HL GRTDN+IKN WNT LKK L  M  +
Sbjct:    63 PDIKRGKFSAEEEQTILHLHSILGNKWSAIATHLQGRTDNEIKNFWNTHLKKKLIQMGID 122

Query:   125 LLTYQ 129
              +T+Q
Sbjct:   123 PVTHQ 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2145402 MYB92 "myb domain protein 92" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 106/274 (38%), Positives = 153/274 (55%)

Query:     5 KTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
             ++P  D   +K+G W+P+ED KL+ Y+++HGH +WR LPK AG+ R GKSCRLRW NYLR
Sbjct:     3 RSPISDDSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNYLR 62

Query:    65 PDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
             PDIKRG F+P+E  TI+ LH + GNKW+ IA+ LPGRTDN+IKN WNT LKK L  M  +
Sbjct:    63 PDIKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKKLIQMGFD 122

Query:   125 LLTYQXXXXXXXXTVKSD-FPSTRQMVKCAS-AR--VEAEAGLPI--ESSSIKTGGESVR 178
              +T++          ++D F    Q++  +S  R  V+ +   PI  E + +K   E  +
Sbjct:   123 PMTHRP---------RTDIFSGLSQLMSLSSNLRGFVDLQQQFPIDQEHTILKLQTEMAK 173

Query:   179 VEAEAPLSIQSSSLLNSPLVDKPYSDIYLGLWNSIVGGSFRKTARKSGGLSENAISQTSL 238
             ++    L +Q SS+ N+     P     L L NSI   SF++T   S   + N +    L
Sbjct:   174 LQLFQYL-LQPSSMSNNV---NPNDFDTLSLLNSIA--SFKET---SNNTTSNNLDLGFL 224

Query:   239 QMKLEPGSIVEDQAKANRTSASSDTAPEQ-DDSY 271
                L+    +      N     S   P+  DD++
Sbjct:   225 GSYLQDFHSLPSLKTLNSNMEPSSVFPQNLDDNH 258

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	7e-50
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	6e-44
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-16
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-12
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-11
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	4e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	5e-08
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-05

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  171 bits (435), Expect = 7e-50
 Identities = 85/199 (42%), Positives = 123/199 (61%), Gaps = 13/199 (6%)

Query: 9   CDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIK 68
           C  +K+++G+WSPEED KL+++I ++GHG W  +PKQAG+ R GKSCRLRW+NYLRPD+K
Sbjct: 7   CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK 66

Query: 69  RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTY 128
           RG F+ +E   II+LH + GN+W+ IA+ LPGRTDN+IKNLWN+ LKK L+    +  T+
Sbjct: 67  RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTH 126

Query: 129 QS-----------PSSSGPSTVKSDFPSTR-QMVKCASARVEAEAGLPIESSSIKTGGES 176
           +            P +   S   S   S    ++K  +++  A A     SSSI   G  
Sbjct: 127 KPLSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLA-ALQEKRSSSISPAGYQ 185

Query: 177 VRVEAEAPLSIQSSSLLNS 195
           + VE+ +   I +S+  N 
Sbjct: 186 LEVESSSSSKINNSNNNNH 204

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  150 bits (381), Expect = 6e-44
 Identities = 68/118 (57%), Positives = 85/118 (72%)

Query: 1   MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWM 60
           + K+ TP C    MKRG W+ EED  L+ +IK+ G G WR LPK+AG+LR GKSCRLRWM
Sbjct: 10  VSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWM 69

Query: 61  NYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
           NYLRP +KRG    +E   I++LH L GN+W+ IA  +PGRTDN+IKN WNT L+K L
Sbjct: 70  NYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 70.6 bits (174), Expect = 5e-16
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL 63
          RG W+PEED  LI+ +K+HG+G W  + K     R+   C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 19 WSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVA 78
          W+ EED KL++ ++++G   W+ + ++ G  R+  +CR RW   LRP   RGP+  EE  
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEELG--RTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRP 65
          +G W+ EED  LI+ +K++G   W  + K+    R+ + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 69  RGPFAPEEVATIIQLHGLFGNK-WAAIASHLPGRTDNDIKNLWNTRL 114
           RGP+ PEE   +I+     GN  W+ IA HLPGRTDN  KN WN  L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 19 WSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL 63
          W+ EED  L++ +K++G   W  + K+    R+ K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 11  MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRG 70
             K K G W   ED  L   +K+ G   W  +     I  +GK    RW N+L P +K+ 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVAS-LLISSTGKQSSNRWNNHLNPQLKKK 73

Query: 71  PFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWN 111
            ++ EE   +I L    G +W+ IA +   RT       + 
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 69  RGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKK 116
           +G +  EE   +I+L   +G N W  IA  LPGRT    +  W   LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 71  PFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRL 114
           P+  EE   +++    +G N W  IA  LPGRT    +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 72  FAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ 119
           +  EE   +++L   +GN W  IA  L GRT +  ++ W  +L+    
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRS 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.64
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.63
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.56
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.51
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.41
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.22
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.21
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.09
PLN03212	249	Transcription repressor MYB5; Provisional	99.09
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.05
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.95
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.9
PLN03091	459	hypothetical protein; Provisional	98.86
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.77
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.38
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.95
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.58
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.56
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.55
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.38
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.28
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.11
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.07
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.96
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.65
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.65
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.59
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.59
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.57
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.13
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.1
PRK13923	170	putative spore coat protein regulator protein YlbO	95.87
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.74
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.24
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.17
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.16
PRK13923	170	putative spore coat protein regulator protein YlbO	94.88
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.84
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.31
KOG4282	345	consensus Transcription factor GT-2 and related pr	94.29
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	93.8
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.41
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.47
KOG1194	534	consensus Predicted DNA-binding protein, contains	90.85
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	88.7
KOG4282	345	consensus Transcription factor GT-2 and related pr	84.98
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	84.67
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	83.48

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=7.5e-40  Score=303.53  Aligned_cols=132  Identities=52%  Similarity=0.994  Sum_probs=127.0

Q ss_pred             CCCCCCcccccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHH
Q 041991            1 MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATI   80 (325)
Q Consensus         1 lG~~R~~~cdk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~L   80 (325)
                      |++++.|||+|.+++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.|||+|.+++++||+|||++|
T Consensus        10 ~~~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lL   89 (249)
T PLN03212         10 VSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLI   89 (249)
T ss_pred             CCCCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHH
Confidence            57899999999999999999999999999999999999999999997789999999999999999999999999999999


Q ss_pred             HHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcccCcCCCCCCC
Q 041991           81 IQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQSPS  132 (325)
Q Consensus        81 l~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~~~~~~~~~s  132 (325)
                      ++++.+||++|+.||++|||||+++|||||+.++++++.+.++++.++++..
T Consensus        90 lel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~  141 (249)
T PLN03212         90 LRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD  141 (249)
T ss_pred             HHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999988877643

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-39  Score=320.73  Aligned_cols=161  Identities=47%  Similarity=0.842  Sum_probs=145.4

Q ss_pred             CCCcccccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHH
Q 041991            4 RKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQL   83 (325)
Q Consensus         4 ~R~~~cdk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l   83 (325)
                      +|++||||.+++||+||+|||++|+++|++||..+|..||+.++++|+++|||+||.|||+|++++++||+|||++|+++
T Consensus         2 gr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL   81 (459)
T PLN03091          2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL   81 (459)
T ss_pred             CCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999998789999999999999999999999999999999999


Q ss_pred             HHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhhcC
Q 041991           84 HGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQSPSSSGPSTVKSDFPSTRQMVKCASARVEAEAGL  163 (325)
Q Consensus        84 ~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~~~~~~~~~sss~~~~~~s~~ps~~h~~q~esarlEaearl  163 (325)
                      |++||++|+.||++|||||+++|||||+.++||++++.++++.++++.....  ......|....+++..++++++|..+
T Consensus        82 ~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E--~~~d~~p~~~~~~~~~s~~~~~el~~  159 (459)
T PLN03091         82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE--NGEDKNPPTDDKSDKASSVVSNELNL  159 (459)
T ss_pred             HHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc--cccccCCccccccccchhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999988865432  12234567778888888888777654


Q ss_pred             CCc
Q 041991          164 PIE  166 (325)
Q Consensus       164 ~~~  166 (325)
                      ...
T Consensus       160 ~~~  162 (459)
T PLN03091        160 LKA  162 (459)
T ss_pred             hhh
Confidence            433

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=3.8e-39  Score=299.18  Aligned_cols=114  Identities=55%  Similarity=0.954  Sum_probs=109.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHH
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAA   93 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~   93 (325)
                      +.||+||+|||++|++||++||+++|..||+.+|++||+|+||+||+|||+|++++|.||+|||++|+++|..|||+|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHHHHhhcccCcCC
Q 041991           94 IASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLT  127 (325)
Q Consensus        94 IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~~~~~  127 (325)
                      ||++|||||+|+|||||++.+||++..+++++..
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~  120 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPST  120 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999998855443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=6.4e-18  Score=173.01  Aligned_cols=105  Identities=23%  Similarity=0.400  Sum_probs=96.4

Q ss_pred             cccccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHh
Q 041991            7 PFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGL   86 (325)
Q Consensus         7 ~~cdk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~   86 (325)
                      ...-.|++++|+||.+||-+|+.+|.+||..+|..|-..++ +|+..|||+||+|.|....|.+.||-.||+.|+.++.+
T Consensus       351 ~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~  429 (939)
T KOG0049|consen  351 SHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKV  429 (939)
T ss_pred             eeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHH
Confidence            34446999999999999999999999999999999999998 89999999999999999999999999999999999999


Q ss_pred             hC-CCHHHHHhhCCCCCHHHHHHHHHH
Q 041991           87 FG-NKWAAIASHLPGRTDNDIKNLWNT  112 (325)
Q Consensus        87 ~G-~kWs~IA~~LpGRT~nq~KnRW~t  112 (325)
                      || ++|.+||..||+||..|...|=..
T Consensus       430 YG~g~WakcA~~Lp~~t~~q~~rrR~R  456 (939)
T KOG0049|consen  430 YGKGNWAKCAMLLPKKTSRQLRRRRLR  456 (939)
T ss_pred             HccchHHHHHHHccccchhHHHHHHHH
Confidence            99 679999999999999766554333

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.64  E-value=1.3e-16  Score=163.51  Aligned_cols=119  Identities=22%  Similarity=0.473  Sum_probs=106.0

Q ss_pred             CCCCCCc--ccc-----cCCCCcCCCCHHHHHHHHHHHHHhCCC---CcccccccccccccchhhhhhhhhhcCCCCCCC
Q 041991            1 MGKRKTP--FCD-----MEKMKRGVWSPEEDAKLIQYIKEHGHG---TWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRG   70 (325)
Q Consensus         1 lG~~R~~--~cd-----k~~lkKG~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg   70 (325)
                      ||+.|+.  |..     ..-++...||.|||.+|..+|+....+   +|++|-..|+ +|+..|...||.+.|+|.+++|
T Consensus       283 Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg  361 (939)
T KOG0049|consen  283 LGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHG  361 (939)
T ss_pred             hCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCC
Confidence            6787775  432     234778999999999999999988544   8999999998 8999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhhCCC-HHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991           71 PFAPEEVATIIQLHGLFGNK-WAAIASHLPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        71 ~WT~EED~~Ll~l~~~~G~k-Ws~IA~~LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      +||.+||.+|+.++.+||.+ |.+|-..+|||++.||+.||.+.|....+.
T Consensus       362 ~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~  412 (939)
T KOG0049|consen  362 RWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKV  412 (939)
T ss_pred             CCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999976 999999999999999999999988765543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.63  E-value=2.1e-16  Score=116.67  Aligned_cols=60  Identities=42%  Similarity=0.899  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHH
Q 041991           19 WSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATI   80 (325)
Q Consensus        19 WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~L   80 (325)
                      ||+|||++|+.+|.+||. +|..||+.++ .|++.+|+.||.++|+|.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999996 9999999997 79999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.56  E-value=2.4e-15  Score=153.07  Aligned_cols=108  Identities=27%  Similarity=0.464  Sum_probs=103.0

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK   90 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~k   90 (325)
                      ..+++.|.|+..||+.|..+|+++|..+|..||..+. .|+++||+.||.++++|.+++..|+.+||+.|+.+..++|++
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            5678899999999999999999999999999999998 499999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHHHHh
Q 041991           91 WAAIASHLPGRTDNDIKNLWNTRLKKHLQ  119 (325)
Q Consensus        91 Ws~IA~~LpGRT~nq~KnRW~t~lkkkl~  119 (325)
                      |+.||..++|||..+|.+||...+.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988876655

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=1.7e-14  Score=145.18  Aligned_cols=152  Identities=23%  Similarity=0.406  Sum_probs=121.8

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHH
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWA   92 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs   92 (325)
                      -++.|-|+.-||+.|...|.+||...|..|++.+. ..+.+||+.||..+|+|.|++..|+.|||++||.+.+.+...|.
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr   82 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR   82 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence            36789999999999999999999999999999997 68999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHHHHHHhhccc-CcCC---CCCCCCCCCCCCCCCCCCCccccchhhhhh-hhhhcCCCc
Q 041991           93 AIASHLPGRTDNDIKNLWNTRLKKHLQSMNH-NLLT---YQSPSSSGPSTVKSDFPSTRQMVKCASARV-EAEAGLPIE  166 (325)
Q Consensus        93 ~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~-~~~~---~~~~sss~~~~~~s~~ps~~h~~q~esarl-Eaearl~~~  166 (325)
                      .|+..| ||+.++|-.||+.++-........ .+.+   ..+.-..|-.-....-|-.-.|-..+..++ ||.|||++-
T Consensus        83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ePn~e~~~aRpd~~dmdEde~eMl~eaRarlaNt  160 (617)
T KOG0050|consen   83 TIADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEIEPNQETNPARPDGFDMDEDEGEMLSEARARLANT  160 (617)
T ss_pred             hHHHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcCCCccccccccCCcccchHHHHHHHHHHHHHHhcc
Confidence            999999 999999999999999776554333 1111   222222211111223344446777777777 888888775

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.42  E-value=2.2e-13  Score=140.35  Aligned_cols=102  Identities=27%  Similarity=0.572  Sum_probs=92.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCC--CCCCCCChHHHHHHHHHHH-------
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD--IKRGPFAPEEVATIIQLHG-------   85 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~--lkrg~WT~EED~~Ll~l~~-------   85 (325)
                      .+|.||+||++.|..+|.++|. .|..|++.++  |.+..||+||.+|..+.  .+++.||.||++.|++++.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999997 9999999987  99999999999999997  4899999999999999995       


Q ss_pred             hh-------------------CCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHh
Q 041991           86 LF-------------------GNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ  119 (325)
Q Consensus        86 ~~-------------------G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~  119 (325)
                      ++                   +..|..|++.+..|+..+|+.+|+.++.+...
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~  512 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF  512 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence            34                   13599999988899999999999999886543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.41  E-value=7.2e-14  Score=99.45  Aligned_cols=48  Identities=40%  Similarity=0.785  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      |++||+|||++|+++|.+||.++|..|++.++.+|+..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999779999999987899999999999986

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=1.1e-12  Score=93.37  Aligned_cols=46  Identities=30%  Similarity=0.684  Sum_probs=42.0

Q ss_pred             CCCCChHHHHHHHHHHHhhCCC-HHHHHhhCC-CCCHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNK-WAAIASHLP-GRTDNDIKNLWNTRL  114 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~k-Ws~IA~~Lp-GRT~nq~KnRW~t~l  114 (325)
                      +++||+|||++|++++.+||.+ |..||..|| |||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999998 999999999 999999999999874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.22  E-value=1.1e-11  Score=91.41  Aligned_cols=46  Identities=33%  Similarity=0.661  Sum_probs=39.8

Q ss_pred             CChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991           72 FAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH  117 (325)
Q Consensus        72 WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk  117 (325)
                      ||+|||++|++++.+||++|..||++|+.||..+|++||+..|++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~   46 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPK   46 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTT
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCccc
Confidence            9999999999999999999999999996699999999999977543

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.21  E-value=2.7e-11  Score=83.31  Aligned_cols=47  Identities=40%  Similarity=0.784  Sum_probs=44.4

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      +++||++||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.09  E-value=2.2e-10  Score=77.73  Aligned_cols=44  Identities=34%  Similarity=0.725  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHH
Q 041991           71 PFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRL  114 (325)
Q Consensus        71 ~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~l  114 (325)
                      +||.+|++.|++++.+|| .+|..||..+++||..+|++||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998763

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.09  E-value=1.1e-10  Score=109.47  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=52.3

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHhh
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHL-PGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~L-pGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      ++.+++++||+|||++|++++++|| ++|..||+++ +|||..||+.||.++|+..+++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~k   78 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR   78 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhccc
Confidence            3678999999999999999999999 5799999998 6999999999999999987665

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.05  E-value=1.5e-10  Score=79.63  Aligned_cols=48  Identities=38%  Similarity=0.834  Sum_probs=44.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      +++||++||++|+.++.+||..+|..|++.++ +|++.+|+.||.++++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            57899999999999999999669999999998 8999999999998875

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.95  E-value=4.7e-10  Score=104.61  Aligned_cols=60  Identities=25%  Similarity=0.408  Sum_probs=53.6

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhCCC-HHHHHhhCC-CCCHHHHHHHHHHHHHHHHhhccc
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFGNK-WAAIASHLP-GRTDNDIKNLWNTRLKKHLQSMNH  123 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G~k-Ws~IA~~Lp-GRT~nq~KnRW~t~lkkkl~~~~~  123 (325)
                      ++.+.+|+||.|||++|+++|++||.+ |..|++.++ ||+..+|+-||.++|+..+++..+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~f   65 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNF   65 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCC
Confidence            344567999999999999999999955 999999998 999999999999999998886444

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.90  E-value=1e-09  Score=74.38  Aligned_cols=45  Identities=38%  Similarity=0.780  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc
Q 041991           18 VWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        18 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      +||++||++|+.++.+||..+|..|++.++ +|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999669999999998 799999999998764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03091 hypothetical protein; Provisional

Probab=98.86  E-value=8.3e-10  Score=110.51  Aligned_cols=54  Identities=22%  Similarity=0.449  Sum_probs=50.5

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD   66 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~   66 (325)
                      .+.++||+||+|||++|++++++||. .|..||+.++ +|++.+|+.||...|+..
T Consensus        62 dP~IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk~LP-GRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         62 RPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLP-GRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHhCc-chHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999999998 9999999997 899999999999887653

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.77  E-value=1.1e-08  Score=106.14  Aligned_cols=103  Identities=30%  Similarity=0.424  Sum_probs=83.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHh----CC-------------------CCcccccccccccccchhhhhhhhhhcCCCC-C
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEH----GH-------------------GTWRHLPKQAGILRSGKSCRLRWMNYLRPDI-K   68 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~----G~-------------------~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~l-k   68 (325)
                      .++.+.|+.+||..|-..|..|    |-                   +.|..|.+.++. |+.+.+..+-++.-.|-- +
T Consensus       305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE~~  383 (607)
T KOG0051|consen  305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFENK  383 (607)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCccccc
Confidence            3555899999999999999888    11                   135778888885 999888663223323322 8


Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH  117 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk  117 (325)
                      +|.||+||++.|..+|.++|+.|..|++.| ||.+..|+.+|+.+.+..
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g  431 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCG  431 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccc
Confidence            999999999999999999999999999999 999999999999887643

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.38  E-value=4.9e-08  Score=100.14  Aligned_cols=94  Identities=28%  Similarity=0.594  Sum_probs=81.8

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCC--CCCCCCCChHHHHHHHHHHHhhC---
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRP--DIKRGPFAPEEVATIIQLHGLFG---   88 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P--~lkrg~WT~EED~~Ll~l~~~~G---   88 (325)
                      -.+|.||+||++.|...+.++|. .|..|.+.++  |-+..||+||.+|..+  .+++++|+.||+.+|...+...-   
T Consensus       289 ~~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~  365 (512)
T COG5147         289 EQRGKWTKEEEQELAKLVVEHGG-SWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEA  365 (512)
T ss_pred             hhhccCccccccccccccccccc-hhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHH
Confidence            45699999999999999999997 9999998775  9999999999999999  68899999999999998887322   


Q ss_pred             -----CCHHHHHhhCCCCCHHHHHHHH
Q 041991           89 -----NKWAAIASHLPGRTDNDIKNLW  110 (325)
Q Consensus        89 -----~kWs~IA~~LpGRT~nq~KnRW  110 (325)
                           ..|..|+.++++|....|+.++
T Consensus       366 ~~~~~~~~~li~~~~~~~~~~~~~~~~  392 (512)
T COG5147         366 QQSSRILWLLIAQNIRNRLQHHCRDKY  392 (512)
T ss_pred             hhhhhhhHHHHHHhhhccccCCCCCcc
Confidence                 3499999999888887776644

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.95  E-value=8.4e-06  Score=60.85  Aligned_cols=49  Identities=14%  Similarity=0.344  Sum_probs=44.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-cchhhhhhhhhhc
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHGTW---RHLPKQAGILR-SGKSCRLRWMNYL   63 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~nW---~~IAk~lg~~R-t~kQCR~RW~n~L   63 (325)
                      ++-.||+||.++++++|+.+|.++|   ..|++.++..| +..||+.+++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999999   99999887667 9999999998874

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.58  E-value=0.00018  Score=53.71  Aligned_cols=47  Identities=13%  Similarity=0.185  Sum_probs=40.9

Q ss_pred             CCCCChHHHHHHHHHHHhhCC-CH---HHHHhhCC-CC-CHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGN-KW---AAIASHLP-GR-TDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~-kW---s~IA~~Lp-GR-T~nq~KnRW~t~lk  115 (325)
                      +-.||+||..++++++..||. +|   ..|++.|. .| |..+|+.|.+.+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            558999999999999999996 89   99999984 35 99999999876653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.56  E-value=4.4e-05  Score=76.79  Aligned_cols=50  Identities=16%  Similarity=0.577  Sum_probs=46.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      .+-..-||.+|+-+|++++..||-|||..||+++| .|+..+|+++|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            45568899999999999999999999999999999 899999999999875

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.55  E-value=0.00028  Score=64.97  Aligned_cols=100  Identities=20%  Similarity=0.346  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccc--ccchhhhhhhhhhcC-CCC--------------------CCCCCCh
Q 041991           18 VWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL--RSGKSCRLRWMNYLR-PDI--------------------KRGPFAP   74 (325)
Q Consensus        18 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~--Rt~kQCR~RW~n~L~-P~l--------------------krg~WT~   74 (325)
                      +|++++|-+|+.+|..-.  +-..|.+-+.+.  -|-+.+..||+..|. |.+                    .+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998765  556666544432  366778899999874 332                    3558999


Q ss_pred             HHHHHHHHHHHhhCC---CHHHHHh-----hCCCCCHHHHHHHHHHHHHHHHh
Q 041991           75 EEVATIIQLHGLFGN---KWAAIAS-----HLPGRTDNDIKNLWNTRLKKHLQ  119 (325)
Q Consensus        75 EED~~Ll~l~~~~G~---kWs~IA~-----~LpGRT~nq~KnRW~t~lkkkl~  119 (325)
                      +||++|.........   .+.+|=.     +.++||+.++.++|+.+.+.++-
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            999999997766543   3777732     23789999999999976665553

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.38  E-value=0.00027  Score=71.21  Aligned_cols=50  Identities=18%  Similarity=0.413  Sum_probs=44.7

Q ss_pred             CCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           66 DIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        66 ~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      .+-...||.+||.+||+++..|| ++|..||.++..||..+||.||..++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            34556899999999999999999 889999999988999999999986653

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.00022  Score=73.19  Aligned_cols=55  Identities=27%  Similarity=0.457  Sum_probs=49.9

Q ss_pred             CCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991           66 DIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        66 ~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      .++.|-|+.-||++|-..+.+|| +.|+.|++.++-.|..||++||...+...+++
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~   59 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKK   59 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhh
Confidence            35789999999999999999999 55999999999999999999999988877655

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.11  E-value=0.00069  Score=51.87  Aligned_cols=51  Identities=24%  Similarity=0.427  Sum_probs=33.2

Q ss_pred             CCCCChHHHHHHHHHHHhh--------CCC-HHHHHhhCC-CCCHHHHHHHHHHHHHHHHh
Q 041991           69 RGPFAPEEVATIIQLHGLF--------GNK-WAAIASHLP-GRTDNDIKNLWNTRLKKHLQ  119 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~--------G~k-Ws~IA~~Lp-GRT~nq~KnRW~t~lkkkl~  119 (325)
                      |-+||.|||.+|++.++++        ||+ |.++++..+ .+|-...++||...|+.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            4589999999999999664        233 999999987 89999999999888876543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.07  E-value=0.00051  Score=53.74  Aligned_cols=51  Identities=31%  Similarity=0.484  Sum_probs=36.1

Q ss_pred             CCCCChHHHHHHHHHHHh------hC--C------CHHHHHhhC----CCCCHHHHHHHHHHHHHHHHh
Q 041991           69 RGPFAPEEVATIIQLHGL------FG--N------KWAAIASHL----PGRTDNDIKNLWNTRLKKHLQ  119 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~------~G--~------kWs~IA~~L----pGRT~nq~KnRW~t~lkkkl~  119 (325)
                      |..||.+|...||+++..      ++  .      .|..||..|    ..||..||+++|+++.++..+
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            357999999999999877      32  1      399999987    359999999999997765443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.96  E-value=0.0012  Score=58.96  Aligned_cols=52  Identities=17%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             CCCCCChHHHHHHHHHHHhh---CCC----HHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991           68 KRGPFAPEEVATIIQLHGLF---GNK----WAAIASHLPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~---G~k----Ws~IA~~LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      +...||.|||.+|.+.+-.|   |..    +..++..| +||.-.|.=|||..+||++..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45689999999999999887   432    88999999 999999999999999988754

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.65  E-value=0.00087  Score=68.24  Aligned_cols=46  Identities=22%  Similarity=0.554  Sum_probs=43.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY   62 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~   62 (325)
                      ....||.+|..+|++.|+.||. +|..||+++| +|+.-||.+||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            6679999999999999999998 9999999999 89999999999875

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.65  E-value=0.00068  Score=60.40  Aligned_cols=50  Identities=26%  Similarity=0.646  Sum_probs=42.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhC-CC-----CcccccccccccccchhhhhhhhhhcCC
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHG-HG-----TWRHLPKQAGILRSGKSCRLRWMNYLRP   65 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G-~~-----nW~~IAk~lg~~Rt~kQCR~RW~n~L~P   65 (325)
                      .++-.||.|||.+|.+.|-+|- .|     -+..|++.++  ||.--|.-||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            4678999999999999999992 22     3678888775  9999999999999884

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.59  E-value=0.0029  Score=65.57  Aligned_cols=47  Identities=13%  Similarity=0.340  Sum_probs=43.4

Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRL  114 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~l  114 (325)
                      -++.||++|..+|++.+..||..|.+||.++.+||..+|--|+..+=
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LP  298 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLP  298 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999987654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.59  E-value=0.0023  Score=65.31  Aligned_cols=45  Identities=13%  Similarity=0.334  Sum_probs=42.0

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTR  113 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~  113 (325)
                      ...||.+|..+|++.+..||..|.+||+|+..||..||--||-++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            348999999999999999999999999999999999999999754

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.57  E-value=0.0014  Score=67.79  Aligned_cols=49  Identities=22%  Similarity=0.566  Sum_probs=44.5

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh
Q 041991           12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY   62 (325)
Q Consensus        12 ~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~   62 (325)
                      ...-++.||.+|+.+|++.|+.||. +|..|+.+++ .|+..||-+++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            3445789999999999999999998 9999999999 89999999998765

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.13  E-value=0.0023  Score=49.97  Aligned_cols=48  Identities=33%  Similarity=0.722  Sum_probs=33.1

Q ss_pred             cCCCCHHHHHHHHHHHHH--h----CC-C------Ccccccccc---cccccchhhhhhhhhhc
Q 041991           16 RGVWSPEEDAKLIQYIKE--H----GH-G------TWRHLPKQA---GILRSGKSCRLRWMNYL   63 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k--~----G~-~------nW~~IAk~l---g~~Rt~kQCR~RW~n~L   63 (325)
                      +-.||.+|...|++++..  +    +. +      -|..|+..|   |..|++.||+.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            357999999999999988  2    11 1      499999875   45699999999998864

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.10  E-value=0.0026  Score=48.68  Aligned_cols=52  Identities=31%  Similarity=0.552  Sum_probs=32.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------C--CcccccccccccccchhhhhhhhhhcCCCC
Q 041991           16 RGVWSPEEDAKLIQYIKEHGH------G--TWRHLPKQAGILRSGKSCRLRWMNYLRPDI   67 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~------~--nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~l   67 (325)
                      +-+||.|||+.|+++|.++..      |  -|..+++..+..++-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            458999999999999976621      2  399998887656888889999999997643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.87  E-value=0.011  Score=53.38  Aligned_cols=50  Identities=14%  Similarity=0.253  Sum_probs=42.1

Q ss_pred             CCCCCChHHHHHHHHHHHhhCCC-------HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGNK-------WAAIASHLPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~k-------Ws~IA~~LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      +.+.||.|||.+|.+.+-.|+..       ...++..| +||.-+|.-|||.++++++
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            46789999999998888887632       66667788 9999999999999998765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.74  E-value=0.026  Score=43.42  Aligned_cols=51  Identities=25%  Similarity=0.423  Sum_probs=41.1

Q ss_pred             CCCCChHHHHHHHHHHHhhC----C-------------CHHHHHhhC-----CCCCHHHHHHHHHHHHHHHHh
Q 041991           69 RGPFAPEEVATIIQLHGLFG----N-------------KWAAIASHL-----PGRTDNDIKNLWNTRLKKHLQ  119 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G----~-------------kWs~IA~~L-----pGRT~nq~KnRW~t~lkkkl~  119 (325)
                      ...||.+|.+.|++++.+|-    +             -|..|+..|     +.||..+|+.+|..+....-+
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45799999999999998872    1             299999886     249999999999988765433

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.24  E-value=0.0086  Score=58.80  Aligned_cols=50  Identities=18%  Similarity=0.498  Sum_probs=45.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      +----|+.+|+.+|++.....|-|||..||..+| .|....|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            3345799999999999999999999999999999 8999999999998865

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.17  E-value=0.063  Score=60.19  Aligned_cols=103  Identities=12%  Similarity=0.234  Sum_probs=76.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhh-------hhhh---------h------------------
Q 041991           17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRL-------RWMN---------Y------------------   62 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~-------RW~n---------~------------------   62 (325)
                      +.|+.-+=..++.+..+||..+...||..+. +++...++.       ||..         .                  
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3488888888888999999888888988886 566666552       1111         0                  


Q ss_pred             ---------------c-CCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHh------------hCCCCCHHHHHHHHHHH
Q 041991           63 ---------------L-RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIAS------------HLPGRTDNDIKNLWNTR  113 (325)
Q Consensus        63 ---------------L-~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~------------~LpGRT~nq~KnRW~t~  113 (325)
                                     + .+.-++..||+|||..|+-++.+|| .+|..|-.            ++..||+.+|..|.+++
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                           0 1223445799999999999999999 67999944            24689999999999999


Q ss_pred             HHHHHhh
Q 041991          114 LKKHLQS  120 (325)
Q Consensus       114 lkkkl~~  120 (325)
                      ++-..+.
T Consensus       984 ~~~~~~e  990 (1033)
T PLN03142        984 IRLIEKE  990 (1033)
T ss_pred             HHHHHHH
Confidence            8765443

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.16  E-value=0.024  Score=55.78  Aligned_cols=47  Identities=19%  Similarity=0.383  Sum_probs=42.2

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      ...|+.+||.+|++....+| ++|..||.++..|+..+||.||..+.-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34799999999999999999 789999999988999999999875543

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.88  E-value=0.0083  Score=54.09  Aligned_cols=51  Identities=22%  Similarity=0.528  Sum_probs=40.0

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCC------CcccccccccccccchhhhhhhhhhcCC
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEHGHG------TWRHLPKQAGILRSGKSCRLRWMNYLRP   65 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~G~~------nW~~IAk~lg~~Rt~kQCR~RW~n~L~P   65 (325)
                      +.++..||.|||.+|.+.|.+|+..      -...++..+  +|+...|..||..+++.
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vrk   58 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVRK   58 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHHH
Confidence            4578899999999999999998542      234555555  49999999999877763

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.84  E-value=0.012  Score=45.36  Aligned_cols=49  Identities=22%  Similarity=0.449  Sum_probs=39.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----cccccchhhhhhhhhhc
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGH----------------GTWRHLPKQA----GILRSGKSCRLRWMNYL   63 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~----------------~nW~~IAk~l----g~~Rt~kQCR~RW~n~L   63 (325)
                      ++..||.+|.+.|+++|.+|..                .-|..|+..+    +..|+..||+.+|.|+.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999822                1599888765    22599999999998864

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.31  E-value=0.076  Score=45.19  Aligned_cols=53  Identities=21%  Similarity=0.333  Sum_probs=42.3

Q ss_pred             CCCCCCCChHHHHHHHHHHHhhCC----CHHHHHhh------------CCCCCHHHHHHHHHHHHHHHH
Q 041991           66 DIKRGPFAPEEVATIIQLHGLFGN----KWAAIASH------------LPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        66 ~lkrg~WT~EED~~Ll~l~~~~G~----kWs~IA~~------------LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      .-++..||++||.-|+-++.+||-    .|..|-..            +..||+.+|..|.+++++-..
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE  114 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence            556789999999999999999997    69998652            367999999999999987543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=94.29  E-value=0.12  Score=50.55  Aligned_cols=54  Identities=22%  Similarity=0.335  Sum_probs=43.2

Q ss_pred             CCCCChHHHHHHHHHHHhh----------CCCHHHHHhhC----CCCCHHHHHHHHHHHHHHHHhhcc
Q 041991           69 RGPFAPEEVATIIQLHGLF----------GNKWAAIASHL----PGRTDNDIKNLWNTRLKKHLQSMN  122 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~----------G~kWs~IA~~L----pGRT~nq~KnRW~t~lkkkl~~~~  122 (325)
                      ...|+.+|-..||++..+.          +..|..||+.+    --||+.+||++|.++.++..+...
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~  121 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKA  121 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            3689999999999988653          23499999965    239999999999999887665533

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=93.80  E-value=0.16  Score=40.08  Aligned_cols=46  Identities=33%  Similarity=0.550  Sum_probs=36.4

Q ss_pred             CCChHHHHHHHHHHHhh---CC----------CHHHHHhhC---CC--CCHHHHHHHHHHHHHH
Q 041991           71 PFAPEEVATIIQLHGLF---GN----------KWAAIASHL---PG--RTDNDIKNLWNTRLKK  116 (325)
Q Consensus        71 ~WT~EED~~Ll~l~~~~---G~----------kWs~IA~~L---pG--RT~nq~KnRW~t~lkk  116 (325)
                      .||+++++.|++++.+.   |+          .|..|+..|   +|  .|..+|+|||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            59999999999998653   22          299999887   33  5789999999877765

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.41  E-value=0.1  Score=52.59  Aligned_cols=54  Identities=22%  Similarity=0.320  Sum_probs=47.8

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHhh-----CCC-CCHHHHHHHHHHHHHHHHhhcc
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIASH-----LPG-RTDNDIKNLWNTRLKKHLQSMN  122 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~-----LpG-RT~nq~KnRW~t~lkkkl~~~~  122 (325)
                      ...||.+|-.-|.++++.|.-+|-.||..     ++. ||-.++|.||+.+.++.++-.+
T Consensus       130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            35799999999999999999999999987     555 9999999999999998876543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.47  E-value=0.26  Score=49.64  Aligned_cols=48  Identities=19%  Similarity=0.354  Sum_probs=44.0

Q ss_pred             CCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991           70 GPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH  117 (325)
Q Consensus        70 g~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk  117 (325)
                      .+|+.+|-++.+++..++|..++.|+..||.|...|||-+|..--|+.
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~n  413 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVN  413 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhC
Confidence            389999999999999999999999999999999999999998665543

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=90.85  E-value=0.83  Score=47.05  Aligned_cols=48  Identities=19%  Similarity=0.328  Sum_probs=43.4

Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      -...||.||-.++-+++..||.++.+|-+.||.|+-..|..+|....|
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK  233 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence            345899999999999999999999999999999999999998876554

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=88.70  E-value=1.4  Score=31.24  Aligned_cols=42  Identities=31%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           74 PEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        74 ~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      ++++..++.++...|-.|.+||..+ |.+...|+++....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4678889999999999999999999 99999999987665553

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=84.98  E-value=0.57  Score=45.87  Aligned_cols=48  Identities=31%  Similarity=0.542  Sum_probs=37.8

Q ss_pred             cCCCCHHHHHHHHHHHHHh----CCC-----Ccccccccc---cccccchhhhhhhhhhc
Q 041991           16 RGVWSPEEDAKLIQYIKEH----GHG-----TWRHLPKQA---GILRSGKSCRLRWMNYL   63 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~----G~~-----nW~~IAk~l---g~~Rt~kQCR~RW~n~L   63 (325)
                      -..|+.+|-..|+++..+.    ..+     .|..|++.+   |..|++.||+.||.|..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3789999999999988644    222     599999843   44599999999998854

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=84.67  E-value=0.66  Score=46.87  Aligned_cols=49  Identities=16%  Similarity=0.220  Sum_probs=43.6

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh
Q 041991           12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY   62 (325)
Q Consensus        12 ~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~   62 (325)
                      .+..--+||.+|-+++.+++...|. ++..|+..+| +|..+|+..+|.+-
T Consensus       361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~E  409 (507)
T COG5118         361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIKE  409 (507)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHHH
Confidence            3444568999999999999999998 9999999998 89999999999875

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=83.48  E-value=0.84  Score=38.88  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=30.3

Q ss_pred             ccCCCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 041991           10 DMEKMKRGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQA   46 (325)
Q Consensus        10 dk~~lkKG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~l   46 (325)
                      +.+..++..||.+||.-|+-.+.+||.   +.|..|-..+
T Consensus        43 y~~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   43 YPPNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             STSTSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             cCCCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            345778999999999999999999999   8998887655

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		5e-20
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-19
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		4e-19
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		5e-19
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-18
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		4e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		8e-14
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		7e-13
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		6e-08
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		7e-08
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		8e-05
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-04
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 16  RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPE 75
           +G W+ EED K+I+ +K++G   W  + K     R GK CR RW N+L P++K+  +  E
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 76  EVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS 120
           E   I + H + GN+WA IA  LPGRTDN +KN WN+ +K+ + +
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDT 110

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 14  MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFA 73
           + +G W+ EED ++I++++++G   W  + K     R GK CR RW N+L P++K+  + 
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 74  PEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116
            EE   I Q H   GN+WA IA  LPGRTDN +KN WN+ +++
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Query: 16  RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPE 75
           +G W+ EED ++I+ ++++G   W  + K     R GK CR RW N+L P++K+  +  E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 76  EVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
           E   I Q H   GN+WA IA  LPGRTDN IKN WN+ +++ +
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 13  KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPF 72
           ++ +G W+ EED ++I+ ++++G   W  + K     R GK CR RW N+L P++K+  +
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59
Query: 73  APEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
             EE   I Q H   GN+WA IA  LPGRTDN IKN WN+ +++ +
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 16  RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPE 75
           +G W+ EED ++I+ ++++G   W  + K     R GK CR RW N+L P++K+  +  E
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 76  EVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116
           E   I Q H   GN+WA IA  LPGRTDN IKN WN+ +++
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 16  RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL--RSGKSCRLRWMNYLRPDIKRGPFA 73
           +G ++  ED  + +Y+KE+G   W   P+    L  RS K CR RW N+L P + +  + 
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 74  PEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHN 124
           PEE  TI + +   G+KW+ IA  +PGRTDN IKN WN+ + K + S N N
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI-STNSN 108

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 9   CDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL--RSGKSCRLRWMNYLRPD 66
            +++  K+  ++PEED  L + + +HG   W+ +   A     R+ + CR RW NYL P 
Sbjct: 4   VNLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMI---AATFPNRNARQCRDRWKNYLAPS 59
Query: 67  IKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNT 112
           I   P+  EE A ++Q    +G +WA IA   PGRTD  IKN W T
Sbjct: 60  ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20  SPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVAT 79
           + EED KL Q +  +G   W  +  Q  I R+ + CR RW NY+ P ++  P++PEE   
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 80  IIQLHGLFGNKWAAIASHLPGRTDNDIKNLW 110
           + Q +  +G KW  I+  L  R+DN+I+N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 67  IKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
           +K+  +  EE   I Q H   GN+WA IA  LPGRTDN IKN WN+ +++ +
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 66  DIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116
           ++K+  +  EE   + Q H   GN+WA IA  LPGRTDN IKN WN+ +++
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 52

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66
          +G W+ EED +LI+ ++++G   W  + K     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66
          +G W+ EED ++I+ ++++G   W  + K     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66
          +G W+ EED ++I+ ++++G   W  + K     R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-65
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	4e-64
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-63
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	4e-58
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-53
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-33
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	8e-53
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-26
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-23
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-07
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	4e-20
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-15
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	3e-06
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	9e-10
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-06
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	1e-08
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-08
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	8e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	6e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	4e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	6e-05
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	1e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	8e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  200 bits (510), Expect = 2e-65
 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 1/106 (0%)

Query: 13  KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPF 72
           ++ +G W+ EED ++I+ ++++G   W  + K     R GK CR RW N+L P++K+  +
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59

Query: 73  APEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
             EE   I Q H   GN+WA IA  LPGRTDN IKN WN+ +++ +
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  197 bits (504), Expect = 4e-64
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 16  RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPE 75
           +G ++  ED  + +Y+KE+G   W  +       RS K CR RW N+L P + +  + PE
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 76  EVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQSPSSSG 135
           E  TI + +   G+KW+ IA  +PGRTDN IKN WN+ + K + + +++        S  
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 136 PS 137
             
Sbjct: 121 RK 122

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  195 bits (498), Expect = 3e-63
 Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 1/106 (0%)

Query: 13  KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPF 72
           ++ +G W+ EED ++I++++++G   W  + K     R GK CR RW N+L P++K+  +
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 82

Query: 73  APEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
             EE   I Q H   GN+WA IA  LPGRTDN +KN WN+ +++ +
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  182 bits (464), Expect = 4e-58
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 10  DMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKR 69
           +++  K+  ++PEED  L + + +HG   W+ +       R+ + CR RW NYL P I  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 70  GPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLTYQ 129
            P+  EE A ++Q    +G +WA IA   PGRTD  IKN W T   K        +L + 
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  170 bits (433), Expect = 6e-53
 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 1/106 (0%)

Query: 13  KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPF 72
           ++ +G W+ EED ++I+ ++++G   W  + K     R GK CR RW N+L P++K+  +
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 73  APEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHL 118
             EE   I Q H   GN+WA IA  LPGRTDN IKN WN+ +++ +
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  118 bits (299), Expect = 4e-33
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 14  MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFA 73
           + +  W+ EED KL + ++++G   W+ +       R+   C+ RW   L P++ +GP+ 
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 74  PEEVATIIQLHGLFGNK-WAAIASHLPGRTD 103
            EE   +I+L   +G K W+ IA HL GR  
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIG 93

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  168 bits (427), Expect = 8e-53
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 16  RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPE 75
           +  ++ EED KL Q +  +G   W  + +     R+ + CR RW NY+ P ++  P++PE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 76  EVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ 119
           E   + Q +  +G KW  I+  L  R+DN+I+N W    +   +
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 98.4 bits (246), Expect = 1e-26
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66
          + +G W+ EED +LI+ ++++G   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 91.6 bits (228), Expect = 1e-23
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTW----RHLPKQAGILRSGKSCRLRWMNYLRPDIKRG 70
          K GVW   ED  L   + ++G   W      L +     +S K C+ RW  +L P IK+ 
Sbjct: 8  KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-----KSAKQCKARWYEWLDPSIKKT 62

Query: 71 PFAPEE 76
           ++   
Sbjct: 63 EWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 64  RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTD 103
               K G +   E   +      +G N+W+ IAS L  ++ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 81.1 bits (201), Expect = 4e-20
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66
          + +  W+ EED KL + ++++G   W+ +       R+   C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 67  IKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLK 115
           + +  +  EE   + +L    G + W  IA++LP RTD   ++ W   L 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 13 KMKRGVWSPEEDAKLIQYIKEHGHGTW----RHLPKQAGILRSGKSCRLRWMNYLRPDIK 68
             +  W+ EED +L   +++ G   W     H P      R+ + C+ RW+  L     
Sbjct: 5  SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-----RTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 64  RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTD 103
                +  +  EE   +  L   FG   W  +ASH P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 52.7 bits (127), Expect = 9e-10
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTWRH-LPKQAGILRSGKSCRLRWMNYLR 64
          KR  W  EED  L   ++++G G W   L       R+    + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 68  KRGPFAPEEVATIIQLHGLFGN-KWAAIASHLP--GRTDNDIKNLWNTRLKK 116
           KR  +  EE   +      +G   W+ I  H     RT   +K+ W T  K 
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.4 bits (123), Expect = 4e-09
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKR 69
            K+  WS EE+ KL+   K      WR +    G  R+   C   +   L    +R
Sbjct: 6  SGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.5 bits (100), Expect = 5e-06
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 67  IKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQ 119
            K+  ++ EE   ++ L  L   +W  IA  + GRT       +   L K  Q
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQ 58

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL---RSGKSCRLRWMNYLR-----PD 66
           R  +S  E   L+Q +++ G G WR +   A      R+    + +W   +      P 
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 67 IKRGPFAPEEV-ATIIQLHGLFGNKWA 92
           +RG   P+E+   ++  HG +  +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 19 WSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL---RSGKSCRLRWMNYLR-----PDIKRG 70
          +S  E   L++ ++  G G WR +  +A      R+    + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 71 PFAPEEV-ATIIQLHGLFGNK 90
             P+++   ++  H  +  +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 49.4 bits (117), Expect = 8e-08
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 3   KRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL---RSGKSCRLRW 59
            R       ++  R  ++  E   L++ ++  G G WR +  +A      R+    + +W
Sbjct: 18  SRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKW 77

Query: 60  MNYLR-----PDIKRGPFAPEEV-ATIIQLHGLFGNKWAA 93
              +      P  +RG   P+E+   ++     +    + 
Sbjct: 78  KTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL-RSGKSCRLRWMNYLRPDI 67
          K+  W+ EE   +   ++++G G W  + K    + R+    + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 68  KRGPFAPEEVATIIQLHGLFGN-KWAAIASHLP--GRTDNDIKNLWNTRLKK 116
           K+  +  EE   +      +G   WAAI+ + P   RT   IK+ W T +K+
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT-MKR 51

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL 63
              W+ +E+  L++ + + G G W+ +  Q    ++ + C   +M Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYF 54

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 15  KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL---RSGKSCRLRWMNYLR-----PD 66
            R  +S  E   L++ ++  G G WR +  +A      R+    + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 67  IKRGPFAPEEV-ATIIQLHGLFGNKWA 92
            +RG   P+++   ++  H  +  +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 1  MGKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWM 60
           G+    F   ++   G ++PEE  KL +   +HG   W  +    G  RS  S + R  
Sbjct: 9  SGRENLYFQG-DRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC- 63

Query: 61 NYLRPDIKRG 70
            ++     G
Sbjct: 64 RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 68  KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNT 112
             G + PEE+  + +L    GN WA I + L GR+ + +K+    
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL 65

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL-RSGKSCRLRWMNYLRPDI 67
             K+  W+ EE   +   ++++G G W  + K    + R+    + RW    R  +
Sbjct: 7  NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 68  KRGPFAPEEVATIIQLHGLFGN-KWAAIASHLP--GRTDNDIKNLWNTRLK 115
           K+  +  EE   +      +G   WAAI+ + P   RT   IK+ W T  +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTWRH-LPKQAGILRSGKSCRLRWMNYLRPDI 67
          KR  W  EED  L   ++++G G W   L       R+    + RW    +  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 68  KRGPFAPEEVATIIQLHGLFGN-KWAAIASHLP--GRTDNDIKNLWNTRLKKHLQSMNHN 124
           KR  +  EE   +      +G   W+ I  H     RT   +K+ W T  K  L S +  
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 56  RLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK 115
                +  R ++    +  EE+ T  +     G  W+AIA  +  +T +  KN +    K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 116 KH 117
           + 
Sbjct: 63  RQ 64

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 41.7 bits (98), Expect = 8e-06
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 19 WSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY 62
          W  +E+  LI   +  G G W  +    G  R+ + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 15/138 (10%)

Query: 15  KRGVWSPEEDAKLIQYIKEH-----GHGTWRHLPKQAGIL--RSGKSCRLRWMNYLRPDI 67
            +  ++ EED  ++  ++++      H  +  +   +  +   +G S R R+  YL   +
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEI---SHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 68  KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLLT 127
           +      +    +       GN        LP           +  L   ++   +  L 
Sbjct: 64  EYVYEVDKFGKLVRDDD---GNLIK--TKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLF 118

Query: 128 YQSPSSSGPSTVKSDFPS 145
              P +        D P+
Sbjct: 119 QIDPDTGRSLITDEDTPT 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 59/363 (16%), Positives = 110/363 (30%), Gaps = 81/363 (22%)

Query: 10  DMEKMKRGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRS-GKSCRLRWMN-YLR 64
           D++ M + + S EE    I +I        GT R        L S  +    +++   LR
Sbjct: 37  DVQDMPKSILSKEE----IDHIIMSKDAVSGTLRLF----WTLLSKQEEMVQKFVEEVLR 88

Query: 65  PD-------IKRGPFAPEEVAT--IIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK 115
            +       IK     P  +    I Q   L+ +       ++  R    ++     +L+
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-R----LQPYL--KLR 141

Query: 116 KHLQSMNHN-LLTYQSPSSSGPST----VKSDFPSTRQMV---------KCASARVEAEA 161
           + L  +     +       SG +     V   +    +M           C S     E 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 162 GLPIESSSIKTGGESVRVEAEAPLSIQS-SSLLNSPLVDKPYSDIYLGL---WNSIVGGS 217
              +               +   L I S  + L   L  KPY +  L L    N+    +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 218 FR---K---TAR-KSGGLSENAISQTSLQMKLEPGSIVEDQAK---ANRTSASSDTAPEQ 267
           F    K   T R K      +A + T + +     ++  D+ K              P +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 268 DDSYKP-KVDMMA--VSDSIGSNEF-----TDSSDTALKLLLD----------------F 303
             +  P ++ ++A  + D + + +       D   T ++  L+                F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 304 PDD 306
           P  
Sbjct: 382 PPS 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.84
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.74
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.73
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.72
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.71
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.71
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.69
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.69
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.69
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.67
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.67
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.63
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.62
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.6
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.59
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.57
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.54
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.52
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.25
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.49
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.47
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.47
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.47
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.41
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.38
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.38
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.38
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.31
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.3
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.3
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.3
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.93
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.27
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.26
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.26
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.26
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.25
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.24
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.18
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.16
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	99.02
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.97
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.96
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.91
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.72
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.72
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.69
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.45
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.43
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.43
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.4
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.35
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.23
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.17
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.15
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.13
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.99
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.22
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.94
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.86
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.59
2crg_A	70	Metastasis associated protein MTA3; transcription	97.57
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.55
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.44
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.34
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.05
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.04
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.89
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.78
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.74
2crg_A	70	Metastasis associated protein MTA3; transcription	96.71
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.66
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.65
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.15
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.55
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.26
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.81
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.59
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.98
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	89.31
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	81.98

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=1.5e-34  Score=235.01  Aligned_cols=105  Identities=41%  Similarity=0.820  Sum_probs=99.7

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHH
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWA   92 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs   92 (325)
                      .+++|+||+|||++|+++|++||.++|..||+.++ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999989999999997 89999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991           93 AIASHLPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        93 ~IA~~LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      .||++|||||+++|+|||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998764

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=4e-34  Score=234.17  Aligned_cols=104  Identities=31%  Similarity=0.609  Sum_probs=100.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHH
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIA   95 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA   95 (325)
                      ||+||+|||++|+++|.+||.++|..||..++ +|+++|||+||.++|+|.+++|+||+|||++|++++.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999989999999998 89999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991           96 SHLPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        96 ~~LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      ++|||||+++|++||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999886654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=1.4e-33  Score=238.56  Aligned_cols=107  Identities=37%  Similarity=0.704  Sum_probs=102.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHH
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAI   94 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~I   94 (325)
                      .||+||+|||++|+++|.+||.++|..||+.++ +|+++|||+||.++|+|.+++|+||+|||++|++++.+||++|+.|
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence            379999999999999999999889999999997 8999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 041991           95 ASHLPGRTDNDIKNLWNTRLKKHLQSMN  122 (325)
Q Consensus        95 A~~LpGRT~nq~KnRW~t~lkkkl~~~~  122 (325)
                      |++|||||+++|+|||++++++++....
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999876543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=9e-34  Score=238.42  Aligned_cols=107  Identities=39%  Similarity=0.804  Sum_probs=102.6

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK   90 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~k   90 (325)
                      ++.+++|+||+|||++|+++|++||.++|..||+.++ +|+++||++||.++|+|.+++++||+|||++|++++.+||++
T Consensus        22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~  100 (128)
T 1h8a_C           22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  100 (128)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            6889999999999999999999999989999999998 899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991           91 WAAIASHLPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        91 Ws~IA~~LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      |+.||++|||||+++|+|||+.++++++
T Consensus       101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999998763

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=2.8e-33  Score=235.44  Aligned_cols=105  Identities=38%  Similarity=0.725  Sum_probs=101.1

Q ss_pred             ccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCC
Q 041991           10 DMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGN   89 (325)
Q Consensus        10 dk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~   89 (325)
                      .+...+||+||+|||++|+++|.+||. +|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467899999999999999999999998 9999999997 89999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           90 KWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        90 kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      +|+.||++|||||+++|++||+.++++
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998886

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.3e-31  Score=232.68  Aligned_cols=107  Identities=40%  Similarity=0.796  Sum_probs=102.4

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK   90 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~k   90 (325)
                      .+.+++|+||+|||++|+++|.+||..+|..||+.++ +|+++|||.||.++|+|.+++++||+|||++|++++.+||++
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~  131 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  131 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence            6789999999999999999999999888999999997 899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991           91 WAAIASHLPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        91 Ws~IA~~LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      |+.||++|||||+++|+|||+.++++++
T Consensus       132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999998764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=4.2e-30  Score=223.13  Aligned_cols=103  Identities=29%  Similarity=0.709  Sum_probs=60.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCC-CH
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGN-KW   91 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~-kW   91 (325)
                      ++++++||+|||++|+++|.+||.++|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|++++.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            57899999999999999999999989999999998 89999999999999999999999999999999999999996 69


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           92 AAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        92 s~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      ..||.+|||||+++|++||+++|.+
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p  106 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNP  106 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCc
Confidence            9999999999999999999988754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=3.5e-22  Score=151.93  Aligned_cols=66  Identities=27%  Similarity=0.563  Sum_probs=63.8

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHH
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEV   77 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED   77 (325)
                      .+.+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.+||+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            5789999999999999999999999889999999998 89999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.81  E-value=1.2e-20  Score=158.27  Aligned_cols=74  Identities=28%  Similarity=0.682  Sum_probs=50.5

Q ss_pred             ccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           42 LPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        42 IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      ||+.++ +|+++||+.||.++|+|++++|+||+|||++|++++.+||. +|..||.+|||||+.+|++||+++|.+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   75 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP   75 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence            677887 89999999999999999999999999999999999999996 699999999999999999999988753

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.74  E-value=2.6e-18  Score=158.60  Aligned_cols=106  Identities=17%  Similarity=0.293  Sum_probs=91.9

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccchhhhhhhhhhcCCCCC-----------------
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHG-----TWRHLPKQAGILRSGKSCRLRWMNYLRPDIK-----------------   68 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~-----nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lk-----------------   68 (325)
                      ...++|++||+|||++|+++|+++|..     .|..||+.|+ +|++.|||.||.++|++.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            356889999999999999999999764     2999999998 89999999999999999986                 


Q ss_pred             ------------CCCCChHHHHHHHHHHHh-h------------------------------------------------
Q 041991           69 ------------RGPFAPEEVATIIQLHGL-F------------------------------------------------   87 (325)
Q Consensus        69 ------------rg~WT~EED~~Ll~l~~~-~------------------------------------------------   87 (325)
                                  +..||.+||-.|+..+.+ |                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999998876 2                                                


Q ss_pred             -----CC----CHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991           88 -----GN----KWAAIASHLPGRTDNDIKNLWNTRLKKH  117 (325)
Q Consensus        88 -----G~----kWs~IA~~LpGRT~nq~KnRW~t~lkkk  117 (325)
                           |.    .|.+||+.+|+||.+.+|+||+..+++.
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 11    6999999999999999999999888754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.73  E-value=1.4e-18  Score=134.28  Aligned_cols=58  Identities=24%  Similarity=0.424  Sum_probs=47.3

Q ss_pred             hhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 041991           56 RLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRL  114 (325)
Q Consensus        56 R~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~l  114 (325)
                      .-||.|+|+|++++++||+|||++|++++.+||++|+.||+.| |||+++|||||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999999 999999999998654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.72  E-value=1.6e-18  Score=145.68  Aligned_cols=83  Identities=19%  Similarity=0.404  Sum_probs=77.6

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccchhhhhhhhhhcC-----CCCCCC-CCChHHHHHHH
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG---ILRSGKSCRLRWMNYLR-----PDIKRG-PFAPEEVATII   81 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L~-----P~lkrg-~WT~EED~~Ll   81 (325)
                      +...++++||+|||+.|+++|++||.++|..|++.+.   .+|++.+|++||.|+|+     |.++++ +|+++|+.+|+
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~   91 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL   91 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence            4788999999999999999999999999999999852   37999999999999998     999999 99999999999


Q ss_pred             HHHHhhCCCHHH
Q 041991           82 QLHGLFGNKWAA   93 (325)
Q Consensus        82 ~l~~~~G~kWs~   93 (325)
                      ++|..|||+|++
T Consensus        92 ~~h~~~gn~~~~  103 (121)
T 2juh_A           92 AAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHccchhc
Confidence            999999999976

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.71  E-value=1.5e-17  Score=127.10  Aligned_cols=63  Identities=17%  Similarity=0.171  Sum_probs=58.4

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcccCcC
Q 041991           63 LRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNLL  126 (325)
Q Consensus        63 L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~~~~  126 (325)
                      ++|++++++||+|||++|++++.+||++|..||.+|||||++|||+||+.++++.++. ++++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~   65 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKE   65 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence            5789999999999999999999999999999999999999999999999999998776 65544

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.71  E-value=6.8e-18  Score=142.05  Aligned_cols=80  Identities=19%  Similarity=0.377  Sum_probs=73.7

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccchhhhhhhhhhc-----CCCCCCCCCChHH-HHHHH
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG---ILRSGKSCRLRWMNYL-----RPDIKRGPFAPEE-VATII   81 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L-----~P~lkrg~WT~EE-D~~Ll   81 (325)
                      +...++++||+|||+.|+++|++||.|+|..|++.+.   .+|++.||++||.|++     +|.++++.|+++| +.+|+
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            4567899999999999999999999999999998742   3799999999999999     8999999999999 89999


Q ss_pred             HHHHhhCCC
Q 041991           82 QLHGLFGNK   90 (325)
Q Consensus        82 ~l~~~~G~k   90 (325)
                      ++|..||++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999985

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=1e-17  Score=123.44  Aligned_cols=57  Identities=23%  Similarity=0.550  Sum_probs=54.2

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIK   68 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lk   68 (325)
                      .+.+++++||+|||++|+++|.+||.++|..||+.++ +|+++|||.||.++|+|+++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            4789999999999999999999999889999999998 89999999999999999986

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.69  E-value=9.7e-18  Score=120.27  Aligned_cols=52  Identities=38%  Similarity=0.820  Sum_probs=49.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCC
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD   66 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~   66 (325)
                      ++||+||+|||++|+++|.+||.++|..||+.++ +|+++|||.||.+||+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5899999999999999999999889999999997 899999999999999985

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=3.7e-17  Score=122.76  Aligned_cols=59  Identities=24%  Similarity=0.322  Sum_probs=56.7

Q ss_pred             hcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhc
Q 041991           62 YLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSM  121 (325)
Q Consensus        62 ~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~  121 (325)
                      ||+|.+++++||.|||++|++++.+||++|..||+ |+|||++||++||+.+|++.+++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            79999999999999999999999999999999999 889999999999999999988764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.67  E-value=1.7e-17  Score=118.83  Aligned_cols=52  Identities=27%  Similarity=0.690  Sum_probs=48.5

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCC
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD   66 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~   66 (325)
                      +++|+||+|||++|+++|.+||.++|..||+.++ +|+++|||.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999989999999998 899999999999999985

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.67  E-value=2.3e-17  Score=125.06  Aligned_cols=63  Identities=21%  Similarity=0.337  Sum_probs=58.3

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccchhhhhhhhhhcCCCCCCCCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGI-LRSGKSCRLRWMNYLRPDIKRGPFA   73 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCR~RW~n~L~P~lkrg~WT   73 (325)
                      ++..++++||+|||++|+++|.+||.++|..|++.+++ +|+++|||+||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999999999999999998899999999975 7999999999999999999988764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.63  E-value=9.2e-17  Score=120.80  Aligned_cols=57  Identities=21%  Similarity=0.406  Sum_probs=50.2

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccchhhhhhhhhhcCCCCC
Q 041991           12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGI-LRSGKSCRLRWMNYLRPDIK   68 (325)
Q Consensus        12 ~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCR~RW~n~L~P~lk   68 (325)
                      ...+|++||+|||++|+++|++||.++|..|++.+++ +|+++|||+||.|+++|.++
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4468999999999999999999999999999998653 69999999999999999874

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=2.7e-16  Score=115.84  Aligned_cols=55  Identities=27%  Similarity=0.428  Sum_probs=51.4

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      .|.+++++||+|||++|++++.+|| ++|..||.+|+|||+.||++||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 699999999999999999999999987643

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.60  E-value=1.1e-15  Score=109.46  Aligned_cols=50  Identities=28%  Similarity=0.498  Sum_probs=46.2

Q ss_pred             CCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           67 IKRGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        67 lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      +++++||+|||++|++++.+||. +|..||++|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999998 899999999999999999999999864

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.59  E-value=6.1e-16  Score=114.35  Aligned_cols=55  Identities=18%  Similarity=0.529  Sum_probs=51.7

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCC
Q 041991           12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDI   67 (325)
Q Consensus        12 ~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~l   67 (325)
                      +.+++++||+|||++|+++|++||.++|..||+.++ +|+++|||.||.+||.+..
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence            678999999999999999999999889999999998 8999999999999998753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.59  E-value=2.1e-15  Score=114.21  Aligned_cols=60  Identities=27%  Similarity=0.295  Sum_probs=54.9

Q ss_pred             hcCCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHhhc
Q 041991           62 YLRPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLP--GRTDNDIKNLWNTRLKKHLQSM  121 (325)
Q Consensus        62 ~L~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~Lp--GRT~nq~KnRW~t~lkkkl~~~  121 (325)
                      ...+..++++||+|||++|+++|.+|| ++|..||.+|+  |||+.||++||+++|++.+.+.
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            456778999999999999999999999 69999999999  9999999999999999876553

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.58  E-value=6.8e-16  Score=111.25  Aligned_cols=50  Identities=26%  Similarity=0.473  Sum_probs=47.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccchhhhhhhhhhcC
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGI-LRSGKSCRLRWMNYLR   64 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~-~Rt~kQCR~RW~n~L~   64 (325)
                      ++|+||+|||++|+++|.+||.++|..|++.+++ +|+++||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999975 5999999999999986

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.57  E-value=2.1e-15  Score=108.08  Aligned_cols=50  Identities=32%  Similarity=0.737  Sum_probs=46.9

Q ss_pred             CCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           67 IKRGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        67 lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      +++++||+|||++|++++.+||. +|..||.+|+|||+.||++||+++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999997 699999999999999999999998863

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=3.4e-15  Score=107.57  Aligned_cols=50  Identities=28%  Similarity=0.387  Sum_probs=46.7

Q ss_pred             CCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFG-NKWAAIASHLP--GRTDNDIKNLWNTRLKKH  117 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G-~kWs~IA~~Lp--GRT~nq~KnRW~t~lkkk  117 (325)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            579999999999999999999 69999999999  999999999999998753

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.7e-15  Score=113.77  Aligned_cols=57  Identities=23%  Similarity=0.358  Sum_probs=53.2

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.+++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            4788999999999999999999999 79999999999999999999999999876654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=5.9e-15  Score=109.05  Aligned_cols=52  Identities=10%  Similarity=0.234  Sum_probs=49.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      .+.+++++||+|||++|++++.+|| ++|..||++|+|||+.||++||+++|.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            4678999999999999999999999 799999999999999999999998876

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=6.2e-16  Score=116.07  Aligned_cols=58  Identities=24%  Similarity=0.357  Sum_probs=53.4

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGP   71 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~   71 (325)
                      .|.+++++||+|||++|+++|++||. +|..||+ ++ +|+++|||.||.++|+|.++++.
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            58899999999999999999999998 9999999 65 69999999999999999876653

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-15  Score=116.92  Aligned_cols=61  Identities=21%  Similarity=0.309  Sum_probs=56.3

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccchhhhhhhhhhcCCCCCCCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGH-----GTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPF   72 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~-----~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~W   72 (325)
                      ++.+++++||+|||++|+++|.+||.     .+|..||+.|+ +|+.+|||.||++||.+.++.|..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence            58899999999999999999999996     68999999998 899999999999999998877643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.54  E-value=2.8e-15  Score=110.29  Aligned_cols=52  Identities=21%  Similarity=0.457  Sum_probs=47.9

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc
Q 041991           12 EKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        12 ~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      ..+.+++||+|||++|+++|++||.++|..||+.++.+|+++|||.||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3466899999999999999999998899999999986799999999999986

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=8e-15  Score=112.46  Aligned_cols=57  Identities=19%  Similarity=0.228  Sum_probs=52.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhC------CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFG------NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G------~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      +|.+++++||+|||++|++++.+||      ++|..||.+|+|||+.||++||+.+|++.++.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999      78999999999999999999999999876543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.25  E-value=1.6e-15  Score=120.78  Aligned_cols=57  Identities=23%  Similarity=0.259  Sum_probs=53.7

Q ss_pred             hhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991           61 NYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH  117 (325)
Q Consensus        61 n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk  117 (325)
                      ..+.|.+++++||.|||++|++++.+||++|..||.+|+|||++||++||++++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            357789999999999999999999999999999999999999999999999998864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=2.8e-14  Score=107.22  Aligned_cols=52  Identities=29%  Similarity=0.453  Sum_probs=46.9

Q ss_pred             CCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCC--CCCHHHHHHHHHHHHHHHH
Q 041991           67 IKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLP--GRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        67 lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~Lp--GRT~nq~KnRW~t~lkkkl  118 (325)
                      .++++||+|||++|+++|.+|| .+|..||++++  |||+.||++||++++|..+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            5789999999999999999999 58999999966  9999999999999988643

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.49  E-value=6.6e-15  Score=112.43  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKR   69 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkr   69 (325)
                      .+.+++++||+|||++|+++|.+||. +|..||+.++ +|+..||+.||.+||++.++.
T Consensus         4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999998 9999999998 899999999999999887766

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.47  E-value=2.7e-14  Score=117.28  Aligned_cols=79  Identities=24%  Similarity=0.437  Sum_probs=69.5

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccchhhhhhhhhhc-----CCCCCCCCCChHHHHH-HH
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG---ILRSGKSCRLRWMNYL-----RPDIKRGPFAPEEVAT-II   81 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg---~~Rt~kQCR~RW~n~L-----~P~lkrg~WT~EED~~-Ll   81 (325)
                      +...++++||+|||+.|+++|++||.++|..|++.++   .+|++.+|++||.|++     +|.+++|.-+++|-.. ++
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~   87 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL   87 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence            5778999999999999999999999999999999762   3799999999999999     6999999888887765 88


Q ss_pred             HHHHhhCC
Q 041991           82 QLHGLFGN   89 (325)
Q Consensus        82 ~l~~~~G~   89 (325)
                      +++..+|+
T Consensus        88 ~~~~~~~~   95 (105)
T 2aje_A           88 NAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887663

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.47  E-value=6.2e-14  Score=103.02  Aligned_cols=50  Identities=18%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCC-CCCHHHHHHHHHHHH
Q 041991           65 PDIKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLP-GRTDNDIKNLWNTRL  114 (325)
Q Consensus        65 P~lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~Lp-GRT~nq~KnRW~t~l  114 (325)
                      ..+.+++||+|||++|++++.+|| ++|..||++|+ |||+.||++||++++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999999 89999999999 999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.47  E-value=4.3e-14  Score=111.51  Aligned_cols=69  Identities=22%  Similarity=0.488  Sum_probs=61.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc----ccccccchhhhhhhhhhc-----CCCCCCC-CCChHHHHHHHHHHHh
Q 041991           17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQ----AGILRSGKSCRLRWMNYL-----RPDIKRG-PFAPEEVATIIQLHGL   86 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~----lg~~Rt~kQCR~RW~n~L-----~P~lkrg-~WT~EED~~Ll~l~~~   86 (325)
                      ++||+|||+.|+++|++||.|+|..|++.    ++ +|++++|++||.|+|     .|.+++| +...+...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999985    55 799999999999998     6877776 6777777889998865

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.41  E-value=1.3e-13  Score=107.61  Aligned_cols=60  Identities=17%  Similarity=0.353  Sum_probs=53.3

Q ss_pred             CCCCCcccccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc
Q 041991            2 GKRKTPFCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus         2 G~~R~~~cdk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      |..+...+.+....+++||+|||++|+++|++|| ++|..||+.++ +|+..||+.||.++.
T Consensus         4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~   63 (79)
T 2yus_A            4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP   63 (79)
T ss_dssp             SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred             cccCccCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            4445455677888999999999999999999999 69999999998 799999999999983

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=3.8e-13  Score=103.69  Aligned_cols=52  Identities=13%  Similarity=0.289  Sum_probs=48.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      ++.+.+++||.+||++|++++.+||    ++|.+||.+|||||.++|++||+.+++
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3567889999999999999999999    789999999999999999999998875

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.38  E-value=2.1e-13  Score=105.21  Aligned_cols=58  Identities=22%  Similarity=0.359  Sum_probs=48.4

Q ss_pred             ccccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCC
Q 041991            8 FCDMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKR   69 (325)
Q Consensus         8 ~cdk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkr   69 (325)
                      -...|.+++|+||+|||++|+++|++||. .|..||+.+  +|+++||+.||.. |....+.
T Consensus        15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            34579999999999999999999999998 699999999  6999999999974 5555444

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.38  E-value=2e-13  Score=114.87  Aligned_cols=82  Identities=20%  Similarity=0.309  Sum_probs=61.2

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK   90 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~k   90 (325)
                      .+.+++|+||+|||++|+++|.+||. +|..|++.++ +|++.||+.||.++|++.++.++|+.+--    ......+.+
T Consensus        49 ~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~  122 (131)
T 3zqc_A           49 DPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRK  122 (131)
T ss_dssp             STTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC----
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhh
Confidence            67899999999999999999999997 9999999998 89999999999999999999999887631    011222456


Q ss_pred             HHHHHhhC
Q 041991           91 WAAIASHL   98 (325)
Q Consensus        91 Ws~IA~~L   98 (325)
                      |+.|++.|
T Consensus       123 ~~~i~k~~  130 (131)
T 3zqc_A          123 AADVPKKL  130 (131)
T ss_dssp             --------
T ss_pred             hhhcchhc
Confidence            88877765

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=102.23  Aligned_cols=48  Identities=10%  Similarity=0.293  Sum_probs=45.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 041991           66 DIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTR  113 (325)
Q Consensus        66 ~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~  113 (325)
                      ...+++||+|||++|++++.+||++|..||++|++||+.||++||+.+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999755

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.30  E-value=5.6e-12  Score=99.42  Aligned_cols=49  Identities=24%  Similarity=0.503  Sum_probs=45.6

Q ss_pred             CCCChHHHHHHHHHHHhhCC-CHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 041991           70 GPFAPEEVATIIQLHGLFGN-KWAAIASH----LPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        70 g~WT~EED~~Ll~l~~~~G~-kWs~IA~~----LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      ++||+|||+.|++++.+||. +|+.|++.    |+|||+++||+||++++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999997 99999996    899999999999999998654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.30  E-value=2.1e-12  Score=108.07  Aligned_cols=54  Identities=24%  Similarity=0.492  Sum_probs=49.8

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH  117 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkk  117 (325)
                      .+..++|+||+|||++|++++.+||.+|..||..|+|||..||+.||+++|...
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   59 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS   59 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence            456889999999999999999999999999999999999999999999988643

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.30  E-value=1.7e-12  Score=104.92  Aligned_cols=50  Identities=32%  Similarity=0.761  Sum_probs=47.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           66 DIKRGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        66 ~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      ++++|+||+|||++|++++.+||. +|..||..|||||..||++||..+|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~   51 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   51 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence            478999999999999999999997 69999999999999999999998875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.93  E-value=3.6e-13  Score=107.10  Aligned_cols=53  Identities=23%  Similarity=0.485  Sum_probs=50.2

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRP   65 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P   65 (325)
                      .+.+++|+||+|||++|+++|.+||. +|..||+.++ +|+..||+.||.++|+.
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            57899999999999999999999998 8999999998 89999999999999874

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.27  E-value=8.6e-12  Score=102.40  Aligned_cols=55  Identities=25%  Similarity=0.430  Sum_probs=49.1

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhhC----CCCCHHHHHHHHHHHHHHHH
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFGN-KWAAIASHL----PGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~L----pGRT~nq~KnRW~t~lkkkl  118 (325)
                      .+..++++||.|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||++++++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34678899999999999999999997 999999975    89999999999999998643

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.26  E-value=5.7e-12  Score=94.24  Aligned_cols=49  Identities=24%  Similarity=0.419  Sum_probs=45.8

Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCHHHHH---hhCCCCCHHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGNKWAAIA---SHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~kWs~IA---~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      ++.+||+|||+.|+++|++||.+|..|+   .++++||+.+||+||+++.|+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5789999999999999999999999999   567999999999999998874

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.26  E-value=7e-12  Score=105.29  Aligned_cols=56  Identities=25%  Similarity=0.461  Sum_probs=51.0

Q ss_pred             cCCCCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 041991           63 LRPDIKRGPFAPEEVATIIQLHGLFGN-KWAAIASH----LPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        63 L~P~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~----LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+++||+||+++++...
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            456788999999999999999999997 99999998    499999999999999998643

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.26  E-value=8.6e-12  Score=100.29  Aligned_cols=59  Identities=15%  Similarity=0.371  Sum_probs=50.4

Q ss_pred             CCCCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHHHH-HhhcccCcC
Q 041991           68 KRGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLKKH-LQSMNHNLL  126 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lkkk-l~~~~~~~~  126 (325)
                      .+++||.|||++|++++.+||    ++|.+||.+|||||.++|++||+.++... ..+.|..|.
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~   70 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF   70 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            367999999999999999996    67999999999999999999999988764 455555543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.25  E-value=2.7e-12  Score=118.63  Aligned_cols=55  Identities=24%  Similarity=0.410  Sum_probs=49.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhCCC------HHHHHhhCCCCCHHHHHHHHHHHHHHHHh
Q 041991           65 PDIKRGPFAPEEVATIIQLHGLFGNK------WAAIASHLPGRTDNDIKNLWNTRLKKHLQ  119 (325)
Q Consensus        65 P~lkrg~WT~EED~~Ll~l~~~~G~k------Ws~IA~~LpGRT~nq~KnRW~t~lkkkl~  119 (325)
                      +.+++++||+|||++|+++|.+||++      |..||++|||||+++||+||+++|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            46789999999999999999999986      99999999999999999999999999875

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.24  E-value=1.9e-12  Score=99.74  Aligned_cols=55  Identities=11%  Similarity=0.286  Sum_probs=50.2

Q ss_pred             cccCCCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhhhhhhcC
Q 041991            9 CDMEKMKRGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus         9 cdk~~lkKG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      .++....+++||+|||++|+++|.+||.   .+|..||+.|+ +|+.+||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4677889999999999999999999993   48999999998 8999999999998875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.18  E-value=1.5e-11  Score=100.04  Aligned_cols=48  Identities=23%  Similarity=0.431  Sum_probs=45.2

Q ss_pred             CCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      +|+||+|||++|++++.+||. +|..||..|||||..||+.||.++|.+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p   49 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINP   49 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcc
Confidence            589999999999999999996 799999999999999999999988864

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.16  E-value=6.9e-11  Score=99.38  Aligned_cols=54  Identities=24%  Similarity=0.447  Sum_probs=48.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhCC-CHHHHHhh----CCCCCHHHHHHHHHHHHHHHH
Q 041991           65 PDIKRGPFAPEEVATIIQLHGLFGN-KWAAIASH----LPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        65 P~lkrg~WT~EED~~Ll~l~~~~G~-kWs~IA~~----LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      ...++++||.|||+.|++++.+||. +|+.|++.    |+|||+.+||+||+++++..-
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            3457899999999999999999997 99999987    489999999999999998654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=99.02  E-value=5.8e-10  Score=89.67  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=60.3

Q ss_pred             chhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhC-----CCCCHHHHHHHHHHHHHHHHhhc
Q 041991           52 GKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHL-----PGRTDNDIKNLWNTRLKKHLQSM  121 (325)
Q Consensus        52 ~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~L-----pGRT~nq~KnRW~t~lkkkl~~~  121 (325)
                      ..-+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..+||+||..+.++.++..
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            35678999999987    89999999999999999999999999999     58999999999999999877664

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=8.6e-10  Score=81.65  Aligned_cols=48  Identities=15%  Similarity=0.027  Sum_probs=44.3

Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      ..++||+||++++++++.+||.+|..||..||+||..+|.++|....|
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999976554

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.96  E-value=6.5e-10  Score=85.36  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             CCCCCCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcccCc
Q 041991           66 DIKRGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLKKHLQSMNHNL  125 (325)
Q Consensus        66 ~lkrg~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~~~~  125 (325)
                      ..+.+.||.||+++|.+++.+|+    ++|.+||.++ |||.++|++||+.+.+......|..+
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp   67 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVS   67 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence            35678999999999999999997    6799999998 99999999999998776544444443

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.91  E-value=3e-10  Score=91.27  Aligned_cols=49  Identities=10%  Similarity=0.245  Sum_probs=43.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhhhhhhc
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      ..+++||+|||++|.+++.+||.   ..|..||+.++ +|+.+||+.||.+++
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            34789999999999999999973   46999999998 899999999999875

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.72  E-value=6.1e-09  Score=77.85  Aligned_cols=50  Identities=16%  Similarity=0.194  Sum_probs=44.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccccc---cccccccchhhhhhhhhhcCC
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPK---QAGILRSGKSCRLRWMNYLRP   65 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk---~lg~~Rt~kQCR~RW~n~L~P   65 (325)
                      .++++||+|||+.|++.|++||. +|..|+.   .+. +|+...+.+||.+..+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence            47899999999999999999998 9999994   443 79999999999998764

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.72  E-value=8.3e-09  Score=94.72  Aligned_cols=49  Identities=16%  Similarity=0.287  Sum_probs=45.9

Q ss_pred             CCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      ..++||+||++++++++.+||++|..||+.+++||.+|||++|+..+++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3569999999999999999999999999999999999999999987765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=9.8e-09  Score=75.93  Aligned_cols=53  Identities=13%  Similarity=0.211  Sum_probs=46.6

Q ss_pred             ccCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           10 DMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        10 dk~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      ++.....++||+||++++++++.+||. +|..||+.++ +|+..||+.+|....+
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHTC
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhcC
Confidence            345567799999999999999999996 9999999998 8999999999976544

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.45  E-value=6.4e-08  Score=74.21  Aligned_cols=52  Identities=13%  Similarity=0.227  Sum_probs=45.1

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhhhhhhcCC
Q 041991           12 EKMKRGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRSGKSCRLRWMNYLRP   65 (325)
Q Consensus        12 ~~lkKG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P   65 (325)
                      ...+.+.||.|||++|.+++.+|+.   ..|..||+.+  +|+.++|+.||..++..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence            4566889999999999999999984   4699999997  49999999999887654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.43  E-value=1.8e-07  Score=72.00  Aligned_cols=47  Identities=9%  Similarity=0.229  Sum_probs=42.8

Q ss_pred             CCCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      ...||.+|+++|.+++..|+    .+|..||..+||||..+|+.||..+++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46899999999999999998    469999999999999999999987744

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.43  E-value=1.3e-07  Score=95.19  Aligned_cols=46  Identities=17%  Similarity=0.304  Sum_probs=42.6

Q ss_pred             CCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           70 GPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        70 g~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      .+||+||.+++++++.+||.+|..||++++.||..|||++|..+.+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999975443

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.40  E-value=8.7e-08  Score=70.75  Aligned_cols=48  Identities=27%  Similarity=0.555  Sum_probs=43.0

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccchhhhhhhhhhcC
Q 041991           16 RGVWSPEEDAKLIQYIKEH--------GHGTWRHLPK-QAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~--------G~~nW~~IAk-~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      |.+||+|||+.|+++|.+|        |..-|..+++ .++ +++-.+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5689999999999999999        5456999999 676 8999999999999885

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.35  E-value=4.5e-07  Score=66.89  Aligned_cols=47  Identities=21%  Similarity=0.356  Sum_probs=42.5

Q ss_pred             CCCCChHHHHHHHHHHHhh--------CCC-HHHHHh-hCCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLF--------GNK-WAAIAS-HLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~--------G~k-Ws~IA~-~LpGRT~nq~KnRW~t~lk  115 (325)
                      |.+||+|||.+|++.+.+|        |+. |.+|++ .+|++|-.++++||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        555 999999 7999999999999987664

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.23  E-value=5.2e-07  Score=82.88  Aligned_cols=52  Identities=21%  Similarity=0.361  Sum_probs=47.1

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      ......++||.||++++++++.+||. +|..||+.++ +|+..||+.+|.+|.+
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34456789999999999999999997 9999999998 8999999999998875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.17  E-value=6.6e-07  Score=68.89  Aligned_cols=49  Identities=24%  Similarity=0.437  Sum_probs=43.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccchhhhhhhhhhcCC
Q 041991           16 RGVWSPEEDAKLIQYIKEHGH---GTWRHLPKQAGILRSGKSCRLRWMNYLRP   65 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P   65 (325)
                      ...||.+|+++|.+++..|+.   ++|..||..+| +|+..+|+.||..+++-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            468999999999999999975   47999999998 79999999999987653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.15  E-value=2.6e-06  Score=67.97  Aligned_cols=45  Identities=13%  Similarity=0.273  Sum_probs=43.0

Q ss_pred             CCChHHHHHHHHHHHhhCC---CHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           71 PFAPEEVATIIQLHGLFGN---KWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        71 ~WT~EED~~Ll~l~~~~G~---kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      -||.|||+.||..+++-|.   .|+.||+.|.+|+.+||++||+.+++
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            6999999999999999996   79999999999999999999999887

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=5.5e-06  Score=61.55  Aligned_cols=51  Identities=12%  Similarity=0.230  Sum_probs=45.9

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhh-CCCCCHHHHHHHHHHHH
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASH-LPGRTDNDIKNLWNTRL  114 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~-LpGRT~nq~KnRW~t~l  114 (325)
                      .|.++...||+||-++..+.+.+||.+|..|+++ +++||..+|..+|....
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK   55 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK   55 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence            4778889999999999999999999999999995 89999999999886433

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.99  E-value=1.9e-05  Score=63.29  Aligned_cols=60  Identities=17%  Similarity=0.266  Sum_probs=52.7

Q ss_pred             hhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCC-----CCCHHHHHHHHHHHHHHHHhh
Q 041991           57 LRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLP-----GRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        57 ~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~Lp-----GRT~nq~KnRW~t~lkkkl~~  120 (325)
                      +.|..+|..    ..||.||...|++|+++|+-+|..|+..+.     +||-.++|.||..+.++.++.
T Consensus        22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            456677763    689999999999999999999999999874     699999999999999987765

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.22  E-value=9.3e-07  Score=67.06  Aligned_cols=44  Identities=16%  Similarity=0.257  Sum_probs=41.6

Q ss_pred             CCChHHHHHHHHHHHhhCC---CHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           71 PFAPEEVATIIQLHGLFGN---KWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        71 ~WT~EED~~Ll~l~~~~G~---kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      -||.|||+.||..+++-|.   .|..||..| +|+++||++||+.+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            6999999999999999997   799999999 9999999999998775

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.94  E-value=2.4e-05  Score=74.70  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhh-------hhhh---------h------------------
Q 041991           17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRL-------RWMN---------Y------------------   62 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~-------RW~n---------~------------------   62 (325)
                      +.||..+...++.++.+||..+|..||..++ +++...++.       ||..         .                  
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999997 677766642       2200         0                  


Q ss_pred             -------------c---CCCCCCCCCChHHHHHHHHHHHhhCC----CHHHHHh------------hCCCCCHHHHHHHH
Q 041991           63 -------------L---RPDIKRGPFAPEEVATIIQLHGLFGN----KWAAIAS------------HLPGRTDNDIKNLW  110 (325)
Q Consensus        63 -------------L---~P~lkrg~WT~EED~~Ll~l~~~~G~----kWs~IA~------------~LpGRT~nq~KnRW  110 (325)
                                   |   .+.-+...||++||..||-++.+||.    .|..|..            ++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         0   02234568999999999999999995    4999962            45779999999999


Q ss_pred             HHHHHHHHhh
Q 041991          111 NTRLKKHLQS  120 (325)
Q Consensus       111 ~t~lkkkl~~  120 (325)
                      +++++-..+.
T Consensus       270 ~tLi~~iekE  279 (304)
T 1ofc_X          270 NTLITLIERE  279 (304)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999754443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.86  E-value=2.7e-06  Score=65.44  Aligned_cols=43  Identities=19%  Similarity=0.380  Sum_probs=38.5

Q ss_pred             CCCCChHHHHHHHHHHHhhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGN----KWAAIASHLPGRTDNDIKNLWN  111 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~----kWs~IA~~LpGRT~nq~KnRW~  111 (325)
                      .++||.+|+++|.+++.+|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999874

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.59  E-value=9.5e-05  Score=59.12  Aligned_cols=46  Identities=15%  Similarity=0.085  Sum_probs=42.1

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRL  114 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~l  114 (325)
                      ...||+||.++..+.+.+||.+|..|+..||+||..+|-.+|....
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K   88 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   88 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence            4689999999999999999999999999999999999999886443

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.57  E-value=0.00015  Score=54.97  Aligned_cols=44  Identities=14%  Similarity=0.246  Sum_probs=40.9

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIAS-HLPGRTDNDIKNLWNT  112 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~-~LpGRT~nq~KnRW~t  112 (325)
                      ...||+||-++..+.+.+||.+|..|++ .||+||..+|..+|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4689999999999999999999999999 5899999999999873

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.55  E-value=2.2e-05  Score=60.37  Aligned_cols=45  Identities=9%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccchhhhhhhh
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHG---TWRHLPKQAGILRSGKSCRLRWM   60 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCR~RW~   60 (325)
                      ....||.||+++|.+++..|..+   .|..||..+| +|+..+|+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            45689999999999999999764   7999999998 799999999984

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.44  E-value=9.6e-05  Score=54.79  Aligned_cols=51  Identities=8%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccchhhhhhhhhhc
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPK-QAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCR~RW~n~L   63 (325)
                      .+.++..+||+||-++..+.+.+||. +|..|++ .++ +|+..+|..-|...-
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~wK   55 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYYWK   55 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhccc
Confidence            46778899999999999999999998 9999998 477 899999988775543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.34  E-value=0.00011  Score=74.08  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=44.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      .....+||.||.+++++++.+||. +|..|++.++ +|+..|||..|.+|-+
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            345689999999999999999997 9999999998 8999999999987643

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.05  E-value=0.00031  Score=56.33  Aligned_cols=51  Identities=12%  Similarity=0.217  Sum_probs=44.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccchhhhhhhhhhcC
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG----ILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCR~RW~n~L~   64 (325)
                      .++..+||.||++.|++++++|+. .|..|+..+.    .+|+.-+.+.||....+
T Consensus        27 ~L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             HcCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            355699999999999999999998 9999999983    26999999999977543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.04  E-value=0.00057  Score=53.01  Aligned_cols=50  Identities=18%  Similarity=0.401  Sum_probs=41.4

Q ss_pred             CCCCChHHHHHHHHHHHhhC----------CCHHHHHhhCC----CCCHHHHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFG----------NKWAAIASHLP----GRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G----------~kWs~IA~~Lp----GRT~nq~KnRW~t~lkkkl  118 (325)
                      ...||.+|-..||+++.+..          ..|..||..|.    .||+.||+++|.++.+...
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999997632          14999999873    6999999999998887643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.89  E-value=0.00017  Score=56.02  Aligned_cols=51  Identities=24%  Similarity=0.562  Sum_probs=41.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---cccccchhhhhhhhhhcC
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGH---------GTWRHLPKQA---GILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~---------~nW~~IAk~l---g~~Rt~kQCR~RW~n~L~   64 (325)
                      .+...||.+|-..|++++..+..         .-|..|+..|   |..|++.||+.+|.|..+
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            35689999999999999976421         1599999875   356999999999998753

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.78  E-value=0.0036  Score=55.49  Aligned_cols=45  Identities=16%  Similarity=0.310  Sum_probs=36.3

Q ss_pred             CCChHHHHHHHHHHHhhC-CCHHHHHhh--C----------CC--CCHHHHHHHHHHHHH
Q 041991           71 PFAPEEVATIIQLHGLFG-NKWAAIASH--L----------PG--RTDNDIKNLWNTRLK  115 (325)
Q Consensus        71 ~WT~EED~~Ll~l~~~~G-~kWs~IA~~--L----------pG--RT~nq~KnRW~t~lk  115 (325)
                      .||.+||..||..+.+|| ++|..|..-  |          ..  ++..++..|-..+|+
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence            699999999999999999 889999652  1          12  456679999887776

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.74  E-value=0.0053  Score=60.08  Aligned_cols=105  Identities=17%  Similarity=0.236  Sum_probs=79.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh----------------------------------
Q 041991           17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY----------------------------------   62 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~----------------------------------   62 (325)
                      +.||.-+=..++.++.+||..+-..|+..++.+.+...++. |.+.                                  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999999889999998853455555541 1111                                  


Q ss_pred             --------------cC----CC-CCCCCCChHHHHHHHHHHHhhCC----CHHHHHhh------------CCCCCHHHHH
Q 041991           63 --------------LR----PD-IKRGPFAPEEVATIIQLHGLFGN----KWAAIASH------------LPGRTDNDIK  107 (325)
Q Consensus        63 --------------L~----P~-lkrg~WT~EED~~Ll~l~~~~G~----kWs~IA~~------------LpGRT~nq~K  107 (325)
                                    |.    +. -+...||++||..||-++.+||-    .|..|-..            +..||+.+|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                          00    11 13558999999999999999994    59999443            4679999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 041991          108 NLWNTRLKKHLQSMN  122 (325)
Q Consensus       108 nRW~t~lkkkl~~~~  122 (325)
                      .|.+++++-..+...
T Consensus       283 rRc~tLi~~IeKE~~  297 (374)
T 2y9y_A          283 RRGNTLLQCLEKEFN  297 (374)
T ss_dssp             HHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999986655533

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.71  E-value=0.00092  Score=50.54  Aligned_cols=47  Identities=13%  Similarity=0.159  Sum_probs=40.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccchhhhhhhhhhc
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPK-QAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk-~lg~~Rt~kQCR~RW~n~L   63 (325)
                      ....||+||-+++.+.+.+||. +|..|++ .++ +|+..+|..-|...-
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~wK   54 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYMWK   54 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHhhc
Confidence            4568999999999999999998 9999999 477 899999988776443

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.66  E-value=0.00064  Score=54.29  Aligned_cols=46  Identities=20%  Similarity=0.416  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCcccccccccccccchhhhhhhhhhc
Q 041991           17 GVWSPEEDAKLIQYIKEHGH--GTWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      --||.|||..|+...++.|.  ..|..|++.++ +|++.|+.+||+.++
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence            46999999999999999976  37999999998 899999999997754

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.65  E-value=0.001  Score=53.02  Aligned_cols=45  Identities=13%  Similarity=0.273  Sum_probs=40.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhh
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY   62 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~   62 (325)
                      ...||+||.+++.+.+..||. +|..|++.++ +|+..+|...|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhcc
Confidence            368999999999999999997 9999999998 89999999877543

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.15  E-value=0.00086  Score=50.86  Aligned_cols=46  Identities=13%  Similarity=0.313  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCcccccccccccccchhhhhhhhhhcC
Q 041991           17 GVWSPEEDAKLIQYIKEHGH--GTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~--~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      -.||.|||..|+..+++.|.  .-|..||+.+  +|++.|+..||+..++
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            47999999999999999987  3699999888  5999999999988764

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.55  E-value=0.12  Score=38.62  Aligned_cols=48  Identities=10%  Similarity=0.008  Sum_probs=40.9

Q ss_pred             CCCCCChHHHHHHHHHHHhhCCC---HHHHHhhC--CCCCHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGNK---WAAIASHL--PGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~k---Ws~IA~~L--pGRT~nq~KnRW~t~lk  115 (325)
                      .+-.||+|..+..++++.++|..   +..|-+.|  +|.|..+|+.|.+.+..
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45689999999999999999955   88998886  78999999998876543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.26  E-value=0.054  Score=43.27  Aligned_cols=49  Identities=12%  Similarity=0.245  Sum_probs=41.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccchhhhhhhhhhc
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG----ILRSGKSCRLRWMNYL   63 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg----~~Rt~kQCR~RW~n~L   63 (325)
                      ++...||.||.+.|++++++|.- .|..|+....    ..|+--+.++||....
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            55678999999999999999997 9999988764    2588888888887653

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.81  E-value=0.16  Score=44.67  Aligned_cols=50  Identities=22%  Similarity=0.318  Sum_probs=42.3

Q ss_pred             CCCCCChHHHHHHHHHHHhhC---CCHHHHHhh--CCCCCHHHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFG---NKWAAIASH--LPGRTDNDIKNLWNTRLKKH  117 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G---~kWs~IA~~--LpGRT~nq~KnRW~t~lkkk  117 (325)
                      ....||+.|-..|+..+.+||   .+|..|+..  |.++|..+|+.++..++..-
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            456899999999999999999   579999865  78999999999887766543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.59  E-value=0.19  Score=47.92  Aligned_cols=47  Identities=13%  Similarity=0.246  Sum_probs=41.6

Q ss_pred             CCCCChHHHHHHHHHHHhhCC-CHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGN-KWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~-kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      .+.||..+...++.++.+||. .|..||..++|+|..+|+.+......
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            457999999999999999995 69999999999999999887765554

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.98  E-value=0.22  Score=46.69  Aligned_cols=29  Identities=31%  Similarity=0.680  Sum_probs=26.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc
Q 041991           17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQ   45 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~   45 (325)
                      ..|+.+||..|+..|.+||.|+|..|-.-
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            46999999999999999999999999753

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=89.31  E-value=0.32  Score=36.22  Aligned_cols=50  Identities=12%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCC---cccccccccc-cccchhhhhhhhhh
Q 041991           12 EKMKRGVWSPEEDAKLIQYIKEHGHGT---WRHLPKQAGI-LRSGKSCRLRWMNY   62 (325)
Q Consensus        12 ~~lkKG~WT~EEDe~L~~lV~k~G~~n---W~~IAk~lg~-~Rt~kQCR~RW~n~   62 (325)
                      .+..+-.||+|..++++++|++.|. .   +..|.+.|+. +.+..++..+.+.|
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4556789999999999999999994 4   4566666553 46777887766655

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=81.98  E-value=3  Score=38.95  Aligned_cols=47  Identities=15%  Similarity=0.266  Sum_probs=41.4

Q ss_pred             CCCCChHHHHHHHHHHHhhC---CCHHHHHhh--CCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFG---NKWAAIASH--LPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G---~kWs~IA~~--LpGRT~nq~KnRW~t~lk  115 (325)
                      +++||+.|-..|++.+.+||   .+|..|+..  |+.++...|+.-++.++.
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~   54 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME   54 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            57899999999999999999   589999765  789999999998886664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-20
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-10
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	4e-18
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-16
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	8e-08
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	6e-16
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-11
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-07
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-13
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	5e-09
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-12
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	9e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	9e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	6e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-10
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	9e-04
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	0.001

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (197), Expect = 6e-20
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66
          + +G W+ EED +LI+ ++++G   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 67  IKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLK 115
           + +GP+  EE   +I+L   +G  +W+ IA HL GR     +  W+  L 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.7 bits (189), Expect = 6e-19
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD 66
          +  W+ EED KL + ++++G   W+ +       R+   C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (119), Expect = 3e-09
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 69  RGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLK 115
           +  +  EE   + +L    G + W  IA++LP RTD   ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 75.5 bits (185), Expect = 4e-18
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 19 WSPEEDAKLIQYIKEHGHGTWRHLPKQA---GILRSGKSCRLRWMNYLR-----PDIKRG 70
          +S  E   L++ ++  G G WR +  +A      R+    + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 71 PFAPEE-VATIIQLHGLFGNK 90
             P++ +  ++  H  +  +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 4e-16
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL-RSGKSCRLRWMNYLRPDI 67
          K+  W+ EE   +   ++++G G W  + K    + R+    + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 8e-08
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 68  KRGPFAPEEVATIIQLHGLFGNK-WAAIASH--LPGRTDNDIKNLWNTRLKK 116
           K+  +  EE   +      +G   WAAI+ +     RT   IK+ W T  + 
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.0 bits (171), Expect = 6e-16
 Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLP--KQAGIL--RSGKSCRLRWMNYLRPDIKRGP 71
          +  ++ EED  ++  ++++      H    + +  +   +G S R R+  YL   ++   
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 72 FAPEEVATIIQLHG 85
             +    +    G
Sbjct: 61 EVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 69  RGPFAPEEVATIIQLHGLFGNK------WAAIASHLPGRTDNDIKNLWNTRLKKHLQ 119
           +  F  EE   I+ +      +      +  I+ ++P  T N I++ +   L K L+
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 57

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 1e-15
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL-RSGKSCRLRWMNYLR 64
          KR  W  EED  L   ++++G G W  +        R+    + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 68  KRGPFAPEEVATIIQLHGLFGNK-WAAIASHLP--GRTDNDIKNLWNTRLK 115
           KR  +  EE   +      +G   W+ I  H     RT   +K+ W T  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 23/47 (48%), Positives = 29/47 (61%)

Query: 69  RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK 115
           +  +  EE   I Q H   GN+WA IA  LPGRTDN IKN WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (131), Expect = 7e-11
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 16 RGVWSPEEDAKLIQYIKEHGHGTW---RHLPKQAGILRSGKSCRLRWMNYLR 64
          +  W+ EED  + Q  K  G+      + LP      R+  + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG-----RTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 8/61 (13%)

Query: 19 WSPEEDAKLIQYIKEHGHGTW---RHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPE 75
          W+ EE     Q + + G       + +       R+    +     Y +  +K G     
Sbjct: 5  WTIEEKELFEQGLAKFGRRWTKISKLIGS-----RTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 76 E 76
           
Sbjct: 60 P 60

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 5e-09
 Identities = 11/48 (22%), Positives = 17/48 (35%)

Query: 69  RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116
              +  EE     Q    FG +W  I+  +  RT   +K+      K 
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKN 49

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 1e-12
 Identities = 9/57 (15%), Positives = 18/57 (31%)

Query: 60  MNYLRPDIKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKK 116
           M   +       ++ +E  T  +        +  IAS L  +T  +    +    K 
Sbjct: 8   MKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 9e-12
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 19 WSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNY 62
          W+ +E+  L++ + + G G W+ +  Q    ++ + C   +M Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 8/50 (16%), Positives = 20/50 (40%)

Query: 68  KRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKH 117
               +  EE    +Q    +G  + AI+  +  ++   +KN +    ++ 
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 53

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 15 KRGVWSPEEDAKLIQYIKEHGHGTW---RHLPKQAGILRSGKSCRLRWMNYLR 64
              W+ EE    +Q I+++G         +       +S    +  ++NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGN-----KSVVQVKNFFVNYRR 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 9e-11
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 10 DMEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL--RSGKSCRLRW 59
          +  +     W+  +   L   ++++  G+     K A  +  +S + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 6e-08
 Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 64  RPDIKRGPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLW 110
           R      P+   +   +      +     + W  IA  +P ++  D    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 19 WSPEEDAKLIQYIKEHGHGTWRHLPKQAGIL--RSGKSCRLRWMNYLRPDIKR 69
          WS +E+    + +  +   T       A  +  R+ +  +  +   L  DIK 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 71  PFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLKK 116
           P++ +E     +   ++     ++WA +A  + GRT  ++K  +   ++ 
Sbjct: 3   PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 52

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 9e-04
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 19 WSPEEDAKLIQYIKEHG--HGTWRHLPKQAGILRSGKSCRLRWMNYLR 64
          W+ E D  ++   +E G    T+  + +Q G  ++      R+   ++
Sbjct: 36 WTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELMQ 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 50  RSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK---WAAIASHLPGRTDNDI 106
            S  +             K   +  E    I+ +    G +   ++ I+  L  +T  ++
Sbjct: 14  ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEV 73

Query: 107 KNLWNTRLKKHLQSMNHNLLTYQSPSS 133
            + +   ++    +          PSS
Sbjct: 74  SHRFRELMQLFHTACE------SGPSS 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.74
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.73
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.61
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.55
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.51
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.46
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.46
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.44
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.43
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.42
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.41
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.3
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.25
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.24
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.18
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.18
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.11
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.09
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.89
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.88
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.7
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.15
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.02
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.6
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.55
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.21
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.72
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.28
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.36
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.8
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	93.21
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.23
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	87.83

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.1e-19  Score=126.85  Aligned_cols=52  Identities=38%  Similarity=0.820  Sum_probs=50.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCC
Q 041991           14 MKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD   66 (325)
Q Consensus        14 lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~   66 (325)
                      ++||+||+|||++|+++|++||.++|..||+.|+ +|+++||+.||.+||+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5899999999999999999999989999999998 899999999999999995

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2e-20  Score=146.82  Aligned_cols=71  Identities=14%  Similarity=0.199  Sum_probs=65.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhh
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHG-----TWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLF   87 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~-----nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~   87 (325)
                      |++||+|||++|+++|.+||..     +|..||+.|+ +|+++|||.||.+||+|.+++++||.+||++|+..+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     4999999998 899999999999999999999999999999988766544

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5.4e-18  Score=119.83  Aligned_cols=50  Identities=28%  Similarity=0.706  Sum_probs=48.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCC
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD   66 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~   66 (325)
                      |++||+|||++|+++|.+||.++|..||+.|+ +|+++||+.||.|||+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999989999999998 899999999999999995

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.7e-17  Score=115.05  Aligned_cols=47  Identities=49%  Similarity=0.851  Sum_probs=45.1

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      +++||+|||++|++++.+||++|+.||.+|||||+++|||||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.61  E-value=9e-17  Score=124.60  Aligned_cols=74  Identities=20%  Similarity=0.411  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccc---cccccchhhhhhhhhhc-----CCCCCCCCCChHHHHHHHHHHHhhC
Q 041991           17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQA---GILRSGKSCRLRWMNYL-----RPDIKRGPFAPEEVATIIQLHGLFG   88 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~l---g~~Rt~kQCR~RW~n~L-----~P~lkrg~WT~EED~~Ll~l~~~~G   88 (325)
                      .+||+|||++|+++|.+||.++|..|++.+   ..+|+++||++||.|+|     +|..+++.|+++|   |+..+.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999863   23799999999999998     4778899999877   344444444


Q ss_pred             CCHHH
Q 041991           89 NKWAA   93 (325)
Q Consensus        89 ~kWs~   93 (325)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56653

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.4e-16  Score=112.27  Aligned_cols=50  Identities=32%  Similarity=0.749  Sum_probs=46.9

Q ss_pred             CCCCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           67 IKRGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        67 lkrg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      |++|+||+|||++|++++.+|| ++|..||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5799999999999999999999 5799999999999999999999998763

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.9e-16  Score=111.31  Aligned_cols=54  Identities=22%  Similarity=0.452  Sum_probs=49.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccchhhhhhhhhhcCCCCC
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG-ILRSGKSCRLRWMNYLRPDIK   68 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg-~~Rt~kQCR~RW~n~L~P~lk   68 (325)
                      |+++||+|||++|+++|++||.++|..|++.++ .+|++.||++||.|++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            588999999999999999999999999998743 379999999999999998764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.5e-15  Score=103.42  Aligned_cols=48  Identities=29%  Similarity=0.519  Sum_probs=45.0

Q ss_pred             CCCCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      +++||.|||++|++++.+|| ++|..||.+|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999998863

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.9e-15  Score=106.55  Aligned_cols=50  Identities=26%  Similarity=0.448  Sum_probs=45.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccchhhhhhhhhhcC
Q 041991           15 KRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG-ILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg-~~Rt~kQCR~RW~n~L~   64 (325)
                      ++++||+|||++|+++|.+||.++|..|++.++ .+|++.||++||.|+.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            689999999999999999999999999998764 36999999999999764

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.1e-14  Score=101.67  Aligned_cols=47  Identities=26%  Similarity=0.512  Sum_probs=44.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      |.+||+|||++|+++|++||. +|..||+.++ +|++.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999998 8999999998 8999999999999875

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.4e-14  Score=100.30  Aligned_cols=48  Identities=29%  Similarity=0.414  Sum_probs=43.9

Q ss_pred             CCCCCChHHHHHHHHHHHhhCC-CHHHHHhhC--CCCCHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGN-KWAAIASHL--PGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~-kWs~IA~~L--pGRT~nq~KnRW~t~lk  115 (325)
                      ++++||+|||+.|++++.+||. +|..|++.+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999995 899999985  48999999999998765

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.4e-14  Score=100.46  Aligned_cols=51  Identities=27%  Similarity=0.418  Sum_probs=46.2

Q ss_pred             CCCCCChHHHHHHHHHHHhhC-CCHHHHHhh--CCCCCHHHHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFG-NKWAAIASH--LPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G-~kWs~IA~~--LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      ++++||+|||++|+++|.+|| .+|..|++.  |++||+.||++||+++++..+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            578999999999999999999 589999998  569999999999999988643

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-14  Score=100.39  Aligned_cols=45  Identities=22%  Similarity=0.715  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhc
Q 041991           18 VWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        18 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      .||+|||++|+++|++||.++|..||+.++ +|++.|||.||.+|.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999999999999998 899999999999873

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=3.6e-14  Score=110.75  Aligned_cols=54  Identities=22%  Similarity=0.365  Sum_probs=50.1

Q ss_pred             CCCCChHHHHHHHHHHHhhCCC------HHHHHhhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 041991           69 RGPFAPEEVATIIQLHGLFGNK------WAAIASHLPGRTDNDIKNLWNTRLKKHLQSMN  122 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~k------Ws~IA~~LpGRT~nq~KnRW~t~lkkkl~~~~  122 (325)
                      +++||+|||++|++++.+||.+      |..||.+|||||++||++||+++|.+.+++..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~   60 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY   60 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEE
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCC
Confidence            5899999999999999999975      99999999999999999999999999886543

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-13  Score=100.67  Aligned_cols=52  Identities=21%  Similarity=0.290  Sum_probs=48.2

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHhh
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      ...||.|||++|++++.+||.+|..||.+|||||+.+|++||+.++++..+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999999999999999999876654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.5e-13  Score=91.73  Aligned_cols=43  Identities=12%  Similarity=0.313  Sum_probs=40.8

Q ss_pred             CCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHH
Q 041991           71 PFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTR  113 (325)
Q Consensus        71 ~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~  113 (325)
                      .||.|||++|++++.+|| ++|..||++|+|||+.||++||+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.3e-13  Score=96.50  Aligned_cols=51  Identities=14%  Similarity=0.359  Sum_probs=46.7

Q ss_pred             ccCCCCcCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccchhhhhhhhh
Q 041991           10 DMEKMKRGVWSPEEDAKLIQYIKEHGHG---TWRHLPKQAGILRSGKSCRLRWMN   61 (325)
Q Consensus        10 dk~~lkKG~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCR~RW~n   61 (325)
                      +++...+++||+|||++|+++|.+||.+   +|..||+.|+ +|+++||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4677889999999999999999999986   4999999998 8999999999964

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.6e-12  Score=94.26  Aligned_cols=50  Identities=14%  Similarity=0.276  Sum_probs=45.6

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhhCC----CHHHHHhhCCCCCHHHHHHHHHHH
Q 041991           64 RPDIKRGPFAPEEVATIIQLHGLFGN----KWAAIASHLPGRTDNDIKNLWNTR  113 (325)
Q Consensus        64 ~P~lkrg~WT~EED~~Ll~l~~~~G~----kWs~IA~~LpGRT~nq~KnRW~t~  113 (325)
                      .+...+++||+|||++|++++.+||.    +|..||.+|||||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45677889999999999999999995    599999999999999999999764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.8e-13  Score=100.53  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcCCCCCCCCCChHH
Q 041991           17 GVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLRPDIKRGPFAPEE   76 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EE   76 (325)
                      .+||+|||++|+++|..||. +|..||+.++ +|+..||+.||.+++++..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            57999999999999999996 9999999998 8999999999999999888877766543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.25  E-value=8.4e-12  Score=91.33  Aligned_cols=47  Identities=19%  Similarity=0.510  Sum_probs=42.7

Q ss_pred             CCCChHHHHHHHHHHHhhCC----CHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 041991           70 GPFAPEEVATIIQLHGLFGN----KWAAIASHLPGRTDNDIKNLWNTRLKK  116 (325)
Q Consensus        70 g~WT~EED~~Ll~l~~~~G~----kWs~IA~~LpGRT~nq~KnRW~t~lkk  116 (325)
                      .+||.|||++|++++.+||.    +|.+||.+|||||.+||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999995    499999999999999999999766543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=3.9e-12  Score=100.56  Aligned_cols=70  Identities=11%  Similarity=0.090  Sum_probs=61.4

Q ss_pred             cccchhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHhhCCC---HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 041991           49 LRSGKSCRLRWMNYLRPDIKRGPFAPEEVATIIQLHGLFGNK---WAAIASHLPGRTDNDIKNLWNTRLKKHL  118 (325)
Q Consensus        49 ~Rt~kQCR~RW~n~L~P~lkrg~WT~EED~~Ll~l~~~~G~k---Ws~IA~~LpGRT~nq~KnRW~t~lkkkl  118 (325)
                      ..+..+++.++.+......+...||.|||++||+.++++|.+   |..||+.|+||++++|++||+.+++-.-
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            356666777777777788888899999999999999999988   9999999999999999999998887543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.18  E-value=2.5e-11  Score=93.45  Aligned_cols=51  Identities=24%  Similarity=0.478  Sum_probs=46.0

Q ss_pred             CCCChHHHHHHHHHHHhhCC-CHHHHHhh----CCCCCHHHHHHHHHHHHHHHHhh
Q 041991           70 GPFAPEEVATIIQLHGLFGN-KWAAIASH----LPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        70 g~WT~EED~~Ll~l~~~~G~-kWs~IA~~----LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      .+||.|||++|+++|.+||. +|..|++.    ++|||+.+|++||+++|+.....
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            38999999999999999995 89999985    68999999999999999876544

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.18  E-value=1.2e-12  Score=95.87  Aligned_cols=44  Identities=14%  Similarity=0.313  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---cccccccccccccchhhhhhhhh
Q 041991           17 GVWSPEEDAKLIQYIKEHGHGT---WRHLPKQAGILRSGKSCRLRWMN   61 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~n---W~~IAk~lg~~Rt~kQCR~RW~n   61 (325)
                      .+||+|||++|+++|++||.++   |..||+.++ +|+.+||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5899999999999999999865   999999998 8999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.9e-11  Score=88.65  Aligned_cols=47  Identities=17%  Similarity=0.300  Sum_probs=44.2

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      +.+||++|+++|++++..||.+|..||.+|||||..+|+++|+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999987764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-11  Score=89.93  Aligned_cols=48  Identities=15%  Similarity=0.056  Sum_probs=43.9

Q ss_pred             CCCCCCChHHHHHHHHHHHhhCCCHHHHHhhCCCCCHHHHHHHHHHHH
Q 041991           67 IKRGPFAPEEVATIIQLHGLFGNKWAAIASHLPGRTDNDIKNLWNTRL  114 (325)
Q Consensus        67 lkrg~WT~EED~~Ll~l~~~~G~kWs~IA~~LpGRT~nq~KnRW~t~l  114 (325)
                      -...+||+||+++|++++.+||.+|..||.+|||||..||+++|....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999997543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3e-10  Score=83.93  Aligned_cols=52  Identities=12%  Similarity=0.249  Sum_probs=46.0

Q ss_pred             cCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           11 MEKMKRGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        11 k~~lkKG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      +......+||+|||++|+++|.+||. +|..||+.++ +|+..||+.+|....+
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHTT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHHC
Confidence            44556688999999999999999997 9999999998 8999999999987643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.4e-10  Score=82.84  Aligned_cols=47  Identities=23%  Similarity=0.426  Sum_probs=43.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      ..+||++||++|++++.+||. +|..|++.++ +|+..||+.+|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999997 8999999998 8999999999998764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=2.7e-09  Score=84.01  Aligned_cols=52  Identities=17%  Similarity=0.353  Sum_probs=45.4

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCC--cccccccccccccchhhhhhhhhhcC
Q 041991           12 EKMKRGVWSPEEDAKLIQYIKEHGHGT--WRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        12 ~~lkKG~WT~EEDe~L~~lV~k~G~~n--W~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      .+.+...||.|||+.|++.++++|...  |..|++.++ +|++.|||.||..+++
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm~   82 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            455678999999999999999999632  999999998 8999999999977543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=1.9e-06  Score=61.24  Aligned_cols=44  Identities=14%  Similarity=0.251  Sum_probs=40.4

Q ss_pred             CCCChHHHHHHHHHHHhhCCCHHHHHhh-CCCCCHHHHHHHHHHH
Q 041991           70 GPFAPEEVATIIQLHGLFGNKWAAIASH-LPGRTDNDIKNLWNTR  113 (325)
Q Consensus        70 g~WT~EED~~Ll~l~~~~G~kWs~IA~~-LpGRT~nq~KnRW~t~  113 (325)
                      ..||+||..++.+.+.+||.+|..|++. +|+||..+|.++|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4799999999999999999999999986 6999999999998743

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.2e-06  Score=61.66  Aligned_cols=45  Identities=20%  Similarity=0.362  Sum_probs=40.3

Q ss_pred             CCCChHHHHHHHHHHHhhC----CCHHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           70 GPFAPEEVATIIQLHGLFG----NKWAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        70 g~WT~EED~~Ll~l~~~~G----~kWs~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      +.||.+|+.+|.+++.+|.    .+|.+||..+ |||..+|..|++.+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e   50 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   50 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence            5799999999999999996    5699999999 9999999999965543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=1.6e-05  Score=56.23  Aligned_cols=46  Identities=13%  Similarity=0.165  Sum_probs=40.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccchhhhhhhhhhcC
Q 041991           18 VWSPEEDAKLIQYIKEHGHGTWRHLPKQAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        18 ~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      .||+||-+++.+.+..||. +|..|++.+..+|+..||...|.+.-+
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fYY~~Kk   48 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYMWKT   48 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence            6999999999999999998 999999865338999999998866543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.3e-05  Score=57.55  Aligned_cols=45  Identities=18%  Similarity=0.371  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccchhhhhhhhhhc
Q 041991           17 GVWSPEEDAKLIQYIKEHGHG---TWRHLPKQAGILRSGKSCRLRWMNYL   63 (325)
Q Consensus        17 G~WT~EEDe~L~~lV~k~G~~---nW~~IAk~lg~~Rt~kQCR~RW~n~L   63 (325)
                      +.||.||+.+|.+++.+|..+   .|..||+.+|  |+..+|..||...-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            579999999999999999654   5999999995  99999999997543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.00049  Score=46.43  Aligned_cols=45  Identities=27%  Similarity=0.449  Sum_probs=39.8

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCHHHHHhhC---CCCCHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKWAAIASHL---PGRTDNDIKNLWNTR  113 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kWs~IA~~L---pGRT~nq~KnRW~t~  113 (325)
                      |..||+||-.-|...++.+|+.|..|--.+   |||+..++..+|+.+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            357999999999999999999999996554   899999999888765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00038  Score=49.61  Aligned_cols=47  Identities=19%  Similarity=0.313  Sum_probs=40.4

Q ss_pred             CCCCChHHHHHHHHHHHhhC--------CC-HHHHHh-hCCCCCHHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFG--------NK-WAAIAS-HLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G--------~k-Ws~IA~-~LpGRT~nq~KnRW~t~lk  115 (325)
                      |.+||.|||+.|++.+.++.        |. |..+++ .+|.+|-...|+||...||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999998873        33 999995 6899999999999987764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.72  E-value=0.0019  Score=46.58  Aligned_cols=46  Identities=11%  Similarity=0.042  Sum_probs=39.2

Q ss_pred             CCCCChHHHHHHHHHHHhhCCCH---HHHHhh--CCCCCHHHHHHHHHHHH
Q 041991           69 RGPFAPEEVATIIQLHGLFGNKW---AAIASH--LPGRTDNDIKNLWNTRL  114 (325)
Q Consensus        69 rg~WT~EED~~Ll~l~~~~G~kW---s~IA~~--LpGRT~nq~KnRW~t~l  114 (325)
                      +-.||+||.++.++++.+||..|   ..|...  ++|+|..+|+.|.+.+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999887   477666  59999999999877654

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00043  Score=49.32  Aligned_cols=48  Identities=25%  Similarity=0.508  Sum_probs=39.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------Ccccccc-cccccccchhhhhhhhhhcC
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHG--------TWRHLPK-QAGILRSGKSCRLRWMNYLR   64 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~--------nW~~IAk-~lg~~Rt~kQCR~RW~n~L~   64 (325)
                      +-+||.|||+.|+++|.++...        -|..+++ .++ .++-.+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4689999999999999998432        3888885 454 7899999999999885

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.28  E-value=0.0017  Score=46.84  Aligned_cols=50  Identities=12%  Similarity=0.225  Sum_probs=38.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCc--ccccccccc-cccchhhhhhhhhh
Q 041991           13 KMKRGVWSPEEDAKLIQYIKEHGHGTW--RHLPKQAGI-LRSGKSCRLRWMNY   62 (325)
Q Consensus        13 ~lkKG~WT~EEDe~L~~lV~k~G~~nW--~~IAk~lg~-~Rt~kQCR~RW~n~   62 (325)
                      +..+-.||+||.++++.+|+.+|.+.|  ..|.+.++. +++..||+.+.+.|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            344678999999999999999998544  355555432 57899999877666

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.014  Score=42.52  Aligned_cols=51  Identities=24%  Similarity=0.408  Sum_probs=43.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHh---CCCCcccccccccccccchhhhhhhhhhcCCC
Q 041991           15 KRGVWSPEEDAKLIQYIKEH---GHGTWRHLPKQAGILRSGKSCRLRWMNYLRPD   66 (325)
Q Consensus        15 kKG~WT~EEDe~L~~lV~k~---G~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~   66 (325)
                      .-+.|+++|=++|-.++.-.   ..+.|..||..+| .|+.-.|...|+..+.-.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCcccc
Confidence            44799999999999988754   5678999999999 899999999998876543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.1  Score=37.83  Aligned_cols=48  Identities=8%  Similarity=0.247  Sum_probs=41.4

Q ss_pred             CCCCCChHHHHHHHHHHHhhCCC----HHHHHhhCCCCCHHHHHHHHHHHHH
Q 041991           68 KRGPFAPEEVATIIQLHGLFGNK----WAAIASHLPGRTDNDIKNLWNTRLK  115 (325)
Q Consensus        68 krg~WT~EED~~Ll~l~~~~G~k----Ws~IA~~LpGRT~nq~KnRW~t~lk  115 (325)
                      ..+.|+++|-.+|-.++..+..+    |..+|..+..||..+|..+|...++
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            34689999999999999988754    9999999999999999998876543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.21  E-value=0.13  Score=41.37  Aligned_cols=56  Identities=14%  Similarity=0.166  Sum_probs=44.9

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhhCC-C---HHHHHh------------hCCCCCHHHHHHHHHHHHHHHHhh
Q 041991           65 PDIKRGPFAPEEVATIIQLHGLFGN-K---WAAIAS------------HLPGRTDNDIKNLWNTRLKKHLQS  120 (325)
Q Consensus        65 P~lkrg~WT~EED~~Ll~l~~~~G~-k---Ws~IA~------------~LpGRT~nq~KnRW~t~lkkkl~~  120 (325)
                      +..++..+|+|||.-|+-++.+||- +   |..|-.            .|..||+.+|..|.+++++-..+.
T Consensus        45 ~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          45 GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             TTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            3455567999999999999999993 3   999843            236799999999999999865544

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.23  E-value=0.41  Score=32.61  Aligned_cols=43  Identities=14%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             CCChHHHHHHHHHHHhhC-CCHHHHHhhCCCCCHHHHHHHHHHH
Q 041991           71 PFAPEEVATIIQLHGLFG-NKWAAIASHLPGRTDNDIKNLWNTR  113 (325)
Q Consensus        71 ~WT~EED~~Ll~l~~~~G-~kWs~IA~~LpGRT~nq~KnRW~t~  113 (325)
                      .|+..|=..++.+..+|| .+-..||..|.|+|..+|+.+.+..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            499999999999999999 5799999999999999998865443

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.83  E-value=0.19  Score=33.39  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=36.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccc--ccccchhhhhhhhhh
Q 041991           16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAG--ILRSGKSCRLRWMNY   62 (325)
Q Consensus        16 KG~WT~EEDe~L~~lV~k~G~~nW~~IAk~lg--~~Rt~kQCR~RW~n~   62 (325)
                      +..||.||-.-|...|+++|. .|..|-=.++  .+|+......+|...
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            357999999999999999998 9998865544  358887777777653