Citrus Sinensis ID: 042013

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MANLPQSLSMNVPFGGGPSASSPSAPAGAGANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPTLQAGTAFDHMLVS
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccc
****************************************EHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGV******************
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MANLPQSLSMNVPFGGGPSASSPSAPAGAGANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPTLQAGTAFDHMLVS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Cell differentiation protein RCD1 homolog Transcription factor that down-regulates MYB- and JUN-dependent transcription. May play a role in cell differentiation.confidentQ6NWL4
Cell differentiation protein RCD1 homolog Transcription factor that down-regulates MYB- and JUN-dependent transcription. May play a role in cell differentiation.confidentA7MB47
Cell differentiation protein RCD1 homolog Transcription factor that down-regulates MYB- and JUN-dependent transcription. May play a role in cell differentiation. Required for retinoic acid-induced differentiation of F9 teratocarcinoma cells. Does not bind DNA by itself.confidentQ9JKY0

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2FV2, chain A
Confidence level:very confident
Coverage over the Query: 37-302
View the alignment between query and template
View the model in PyMOL