Citrus Sinensis ID: 042013

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MANLPQSLSMNVPFGGGPSASSPSAPAGAGANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPTLQAGTAFDHMLVS
cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHcHHHHHHHHHHHHHccccHHHHHHHccccEEEcHcccccccccccHEEEEHHHHHHHHHEccccHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHcHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHcccccHHHHHHccHHHHHHHHHHHHHccccccccccccccccHcccc
manlpqslsmnvpfgggpsasspsapagagankdrKMASAEHLVLdlsnpdlreNALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSiypvlsppnltpaqsnRVCNALALLQCVASHPDTRMLFLnahiplylypflnttsksrpfeyLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLrlsdnpracDALRSclpdmlrdatfssclredptTRRWLQQLLHNvgvnrvptlqagtafdhmlvs
MANLPQSLSMNVPFGGGPSASSPSAPAGAGANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHnvgvnrvptlqagtafdhmlvs
MANLPQSLSMNVPFgggpsasspsapagagaNKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPTLQAGTAFDHMLVS
*******************************************************ALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPTLQAGTAFD*****
****************************************EHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLH**********************
MANLPQSLSMNVPFG***********************SAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPTLQAGTAFDHMLVS
**********************************RKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGV******************
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MANLPQSLSMNVPFGGGPSASSPSAPAGAGANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPTLQAGTAFDHMLVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
Q6P819299 Cell differentiation prot yes no 0.875 0.939 0.679 1e-108
Q6IP65299 Cell differentiation prot N/A no 0.875 0.939 0.679 1e-108
Q5PQL2299 Cell differentiation prot yes no 0.813 0.872 0.712 1e-108
Q9JKY0299 Cell differentiation prot yes no 0.813 0.872 0.712 1e-108
Q4R347299 Cell differentiation prot N/A no 0.813 0.872 0.712 1e-108
A7MB47299 Cell differentiation prot yes no 0.813 0.872 0.712 1e-108
Q5R6Z6299 Cell differentiation prot yes no 0.813 0.872 0.712 1e-108
Q92600299 Cell differentiation prot yes no 0.813 0.872 0.712 1e-108
Q6NWL4298 Cell differentiation prot yes no 0.813 0.875 0.701 1e-106
Q92368283 Cell differentiation prot yes no 0.806 0.915 0.671 1e-97
>sp|Q6P819|RCD1_XENTR Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1 Back     alignment and function desciption
 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/284 (67%), Positives = 229/284 (80%), Gaps = 3/284 (1%)

Query: 24  SAPAGAG-ANKDRKMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIA 82
           +AP  A  A  DR+       + +LS+PD RENALLELSK +E   DLAP +W+SFGTIA
Sbjct: 7   AAPVPAALAQVDRE--KIYQWINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIA 64

Query: 83  ALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLN 142
           AL+QEIV+IYP ++PP LT  QSNRVCNALALLQCVASHP+TR  FL AHIPL+LYPFL+
Sbjct: 65  ALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLH 124

Query: 143 TTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATF 202
           T SK+RPFEYLRLTSLGVIGALVK D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATF
Sbjct: 125 TVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATF 184

Query: 203 IVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPR 262
           I+QKILLDD GL YIC T ERF  V  +LG MV  L+++PS+RLLKH++RCYLRLSDNPR
Sbjct: 185 ILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 244

Query: 263 ACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRV 306
           A +ALR CLPD L+D TF+  L++D TT+RWL QL+ N+   +V
Sbjct: 245 AREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQV 288
Transcription factor that down-regulates MYB- and JUN-dependent transcription. May play a role in cell differentiation.
Xenopus tropicalis (taxid: 8364)
>sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog OS=Xenopus laevis GN=rqcd1 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQL2|RCD1_RAT Cell differentiation protein RCD1 homolog OS=Rattus norvegicus GN=Rqcd1 PE=1 SV=1 Back     alignment and function description
>sp|Q9JKY0|RCD1_MOUSE Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R347|RCD1_MACFA Cell differentiation protein RCD1 homolog OS=Macaca fascicularis GN=RQCD1 PE=2 SV=1 Back     alignment and function description
>sp|A7MB47|RCD1_BOVIN Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R6Z6|RCD1_PONAB Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1 PE=2 SV=2 Back     alignment and function description
>sp|Q92600|RCD1_HUMAN Cell differentiation protein RCD1 homolog OS=Homo sapiens GN=RQCD1 PE=1 SV=1 Back     alignment and function description
>sp|Q6NWL4|RCD1_DANRE Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1 PE=2 SV=1 Back     alignment and function description
>sp|Q92368|RCD1_SCHPO Cell differentiation protein rcd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rcd1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
255577151328 Cell differentiation protein rcd1, putat 0.993 0.972 0.940 1e-172
225460895319 PREDICTED: cell differentiation protein 0.993 1.0 0.909 1e-168
449444060319 PREDICTED: cell differentiation protein 0.993 1.0 0.909 1e-167
224056413323 predicted protein [Populus trichocarpa] 0.996 0.990 0.929 1e-167
224116534320 predicted protein [Populus trichocarpa] 0.996 1.0 0.928 1e-166
225460897319 PREDICTED: cell differentiation protein 0.993 1.0 0.894 1e-165
356567322325 PREDICTED: cell differentiation protein 1.0 0.987 0.901 1e-162
356527073325 PREDICTED: cell differentiation protein 1.0 0.987 0.892 1e-160
297835046316 hypothetical protein ARALYDRAFT_479606 [ 0.984 1.0 0.865 1e-156
15232369316 CCR4-NOT transcription complex subunit 9 0.984 1.0 0.862 1e-156
>gi|255577151|ref|XP_002529459.1| Cell differentiation protein rcd1, putative [Ricinus communis] gi|223531075|gb|EEF32925.1| Cell differentiation protein rcd1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 302/321 (94%), Positives = 310/321 (96%), Gaps = 2/321 (0%)

Query: 1   MANLPQSLSMNVPFGGGPSASSPSAPAGAGANKDRKMASAEHLVLDLSNPDLRENALLEL 60
           MANLPQSLSMN  FGG PSAS+P+A AGA ANKDRKMASAEHLVLDLSNPDLRENALLEL
Sbjct: 1   MANLPQSLSMNAQFGG-PSASTPTA-AGAPANKDRKMASAEHLVLDLSNPDLRENALLEL 58

Query: 61  SKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS 120
           SK +ELFQDLAP +WNSFGTIAAL+QEIVSIYPVLSPPNL+PAQSNRVCNALALLQCVAS
Sbjct: 59  SKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLSPAQSNRVCNALALLQCVAS 118

Query: 121 HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE 180
           HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE
Sbjct: 119 HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE 178

Query: 181 IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE 240
           IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE
Sbjct: 179 IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE 238

Query: 241 QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHN 300
           QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRD TFSSCLREDPTTRRWLQQLLHN
Sbjct: 239 QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDNTFSSCLREDPTTRRWLQQLLHN 298

Query: 301 VGVNRVPTLQAGTAFDHMLVS 321
           VGV+RVP L AG AF+HMLVS
Sbjct: 299 VGVSRVPGLPAGAAFEHMLVS 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225460895|ref|XP_002278757.1| PREDICTED: cell differentiation protein RCD1 homolog isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444060|ref|XP_004139793.1| PREDICTED: cell differentiation protein RCD1 homolog [Cucumis sativus] gi|449517076|ref|XP_004165572.1| PREDICTED: cell differentiation protein RCD1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|224056413|ref|XP_002298844.1| predicted protein [Populus trichocarpa] gi|222846102|gb|EEE83649.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224116534|ref|XP_002317325.1| predicted protein [Populus trichocarpa] gi|222860390|gb|EEE97937.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225460897|ref|XP_002278722.1| PREDICTED: cell differentiation protein RCD1 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567322|ref|XP_003551870.1| PREDICTED: cell differentiation protein RCD1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356527073|ref|XP_003532138.1| PREDICTED: cell differentiation protein RCD1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|297835046|ref|XP_002885405.1| hypothetical protein ARALYDRAFT_479606 [Arabidopsis lyrata subsp. lyrata] gi|297331245|gb|EFH61664.1| hypothetical protein ARALYDRAFT_479606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15232369|ref|NP_188716.1| CCR4-NOT transcription complex subunit 9 [Arabidopsis thaliana] gi|20258840|gb|AAM13902.1| putative cell differentiation protein [Arabidopsis thaliana] gi|21689729|gb|AAM67486.1| putative cell differentiation protein [Arabidopsis thaliana] gi|332642903|gb|AEE76424.1| CCR4-NOT transcription complex subunit 9 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
TAIR|locus:2091936316 AT3G20800 "AT3G20800" [Arabido 0.984 1.0 0.833 4.6e-137
TAIR|locus:2182315311 AT5G12980 "AT5G12980" [Arabido 0.965 0.996 0.736 2.8e-121
UNIPROTKB|Q6IP65299 rqcd1 "Cell differentiation pr 0.813 0.872 0.716 3.5e-98
UNIPROTKB|Q6P819299 rqcd1 "Cell differentiation pr 0.813 0.872 0.716 3.5e-98
UNIPROTKB|F2Z4M8299 RQCD1 "Uncharacterized protein 0.813 0.872 0.712 9.4e-98
UNIPROTKB|A7MB47299 RQCD1 "Cell differentiation pr 0.813 0.872 0.712 9.4e-98
UNIPROTKB|Q92600299 RQCD1 "Cell differentiation pr 0.813 0.872 0.712 9.4e-98
UNIPROTKB|F2Z5T0299 RQCD1 "Uncharacterized protein 0.813 0.872 0.712 9.4e-98
UNIPROTKB|Q4R347299 RQCD1 "Cell differentiation pr 0.813 0.872 0.712 9.4e-98
UNIPROTKB|Q5R6Z6299 RQCD1 "Cell differentiation pr 0.813 0.872 0.712 9.4e-98
TAIR|locus:2091936 AT3G20800 "AT3G20800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1342 (477.5 bits), Expect = 4.6e-137, P = 4.6e-137
 Identities = 266/319 (83%), Positives = 279/319 (87%)

Query:     1 MANLPQSLSMNVPFXXXXXXXXXXXXXXXXXNKDRKMASAEHLVLDLSNPDLRENALLEL 60
             MANLP SLSM  PF                 NKDR +ASAE LVLDLSNP+LRENALLEL
Sbjct:     1 MANLPSSLSMGTPFGGPSTSAQNPTGAPA--NKDRNLASAEQLVLDLSNPELRENALLEL 58

Query:    61 SKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS 120
             SK +ELFQDLAP +WNSFGTIAAL+QEIVSIY VL+PPNLTPAQSNRVCN+LALLQCVAS
Sbjct:    59 SKKRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLTPAQSNRVCNSLALLQCVAS 118

Query:   121 HPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE 180
             H DTRMLFL AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE
Sbjct:   119 HSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE 178

Query:   181 IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE 240
             IIPLCLRTMEMGSELSKTVATFIVQKILLDDVG+DYICTTAERFFAVGRVLGNMV +L E
Sbjct:   179 IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGMDYICTTAERFFAVGRVLGNMVQSLVE 238

Query:   241 QPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHN 300
             QPS RLLKHIIRCYLRLSDNPRAC AL SCLPD LRD +FS+CLREDPT RRWLQQL+HN
Sbjct:   239 QPSPRLLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFSNCLREDPTARRWLQQLVHN 298

Query:   301 VGVNRVPTLQAGTAFDHML 319
             VGV RVPT Q G  F+HML
Sbjct:   299 VGVGRVPTHQGG-GFEHML 316
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0007275 "multicellular organismal development" evidence=ISS
TAIR|locus:2182315 AT5G12980 "AT5G12980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IP65 rqcd1 "Cell differentiation protein RCD1 homolog" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P819 rqcd1 "Cell differentiation protein RCD1 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4M8 RQCD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A7MB47 RQCD1 "Cell differentiation protein RCD1 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q92600 RQCD1 "Cell differentiation protein RCD1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5T0 RQCD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R347 RQCD1 "Cell differentiation protein RCD1 homolog" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R6Z6 RQCD1 "Cell differentiation protein RCD1 homolog" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JKY0RCD1_MOUSENo assigned EC number0.71260.81300.8729yesno
Q6IP65RCD1_XENLANo assigned EC number0.67950.87530.9397N/Ano
A7MB47RCD1_BOVINNo assigned EC number0.71260.81300.8729yesno
Q6P819RCD1_XENTRNo assigned EC number0.67950.87530.9397yesno
Q92368RCD1_SCHPONo assigned EC number0.67180.80680.9151yesno
Q6NWL4RCD1_DANRENo assigned EC number0.70110.81300.8758yesno
Q5PQL2RCD1_RATNo assigned EC number0.71260.81300.8729yesno
Q4R347RCD1_MACFANo assigned EC number0.71260.81300.8729N/Ano
Q5R6Z6RCD1_PONABNo assigned EC number0.71260.81300.8729yesno
Q92600RCD1_HUMANNo assigned EC number0.71260.81300.8729yesno
P53829CAF40_YEASTNo assigned EC number0.58000.87220.7506yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
pfam04078262 pfam04078, Rcd1, Cell differentiation family, Rcd1 0.0
COG5209315 COG5209, RCD1, Uncharacterized protein involved in 1e-117
>gnl|CDD|190856 pfam04078, Rcd1, Cell differentiation family, Rcd1-like Back     alignment and domain information 
 Score =  509 bits (1312), Expect = 0.0
 Identities = 208/261 (79%), Positives = 227/261 (86%)

Query: 42  HLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLT 101
            L+ DL+NP+ RENALLELSK +E F DLAP +W+SFGTIAAL+QEIVSIYP+LSPPNLT
Sbjct: 1   QLICDLTNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIVSIYPLLSPPNLT 60

Query: 102 PAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI 161
             QSNRVCNALALLQCVASHP+TR LFL AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI
Sbjct: 61  AQQSNRVCNALALLQCVASHPETRRLFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI 120

Query: 162 GALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTA 221
           GALVK DD EVI+FLLSTEIIPLCLR ME GSELSKTVATFI+QKILLDDVGL+YIC TA
Sbjct: 121 GALVKSDDPEVINFLLSTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTA 180

Query: 222 ERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFS 281
           ERF+AV  VL  MV  L  QPS RLLKH+IRCYLRLSDNPRA +ALR CLP+ LRD TFS
Sbjct: 181 ERFYAVATVLNKMVEQLTRQPSPRLLKHVIRCYLRLSDNPRAREALRKCLPEELRDGTFS 240

Query: 282 SCLREDPTTRRWLQQLLHNVG 302
             L+EDP T+RWL QLL N+G
Sbjct: 241 QLLKEDPATKRWLLQLLQNLG 261

Two of the members in this family have been characterized as being involved in regulation of Ste11 regulated sex genes. Mammalian Rcd1 is a novel transcriptional cofactor that mediates retinoic acid-induced cell differentiation. Length = 262
>gnl|CDD|227534 COG5209, RCD1, Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 100.0
KOG3036293 consensus Protein involved in cell differentiation 100.0
COG5209315 RCD1 Uncharacterized protein involved in cell diff 100.0
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.08
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 92.84
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 91.56
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 91.11
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 90.56
PF05804 708 KAP: Kinesin-associated protein (KAP) 82.95
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 81.35
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 81.32
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-125  Score=878.96  Aligned_cols=261  Identities=80%  Similarity=1.261  Sum_probs=244.3

Q ss_pred             HHHHhcCCcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhcC
Q 042013           42 HLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASH  121 (321)
Q Consensus        42 q~I~~L~~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAsh  121 (321)
                      |||.||++|++||+||+||||+||++|||||+||||||||++|||||+++||+++||+||+++|||||||||||||||||
T Consensus         1 q~i~~L~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh   80 (262)
T PF04078_consen    1 QLILDLCNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH   80 (262)
T ss_dssp             HHHHHTSSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-
T ss_pred             ChhHHhcCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHH
Q 042013          122 PDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVAT  201 (321)
Q Consensus       122 petR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAt  201 (321)
                      ||||.+||+||||+||||||||++|+|||||||||||||||||||+||+|||+||++|||||+|||+||+|||+||||||
T Consensus        81 petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAt  160 (262)
T PF04078_consen   81 PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVAT  160 (262)
T ss_dssp             TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHH
T ss_pred             hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHHhcCCcccchhhhh
Q 042013          202 FIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFS  281 (321)
Q Consensus       202 fIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~~~LP~~Lrd~~f~  281 (321)
                      ||+||||+||+||+|+|||+|||+||++||++||.+++++||+||||||||||+|||||||||++|++|||++|||++|+
T Consensus       161 fIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~Lrd~~f~  240 (262)
T PF04078_consen  161 FILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQLRDGTFS  240 (262)
T ss_dssp             HHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGGTSSTTT
T ss_pred             HHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHHhcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHhC
Q 042013          282 SCLREDPTTRRWLQQLLHNVG  302 (321)
Q Consensus       282 ~~l~~D~~~k~~l~qLl~nl~  302 (321)
                      +++++|+++|+|++||+.|++
T Consensus       241 ~~l~~D~~~k~~l~qLl~nl~  261 (262)
T PF04078_consen  241 NILKDDPSTKRWLQQLLSNLN  261 (262)
T ss_dssp             TGGCS-HHHHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHHHHhc
Confidence            999999999999999999997

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
2fv2_A268 Crystal Structure Analysis Of Human Rcd-1 Conserved 1e-109
>pdb|2FV2|A Chain A, Crystal Structure Analysis Of Human Rcd-1 Conserved Region Length = 268 Back     alignment and structure 
Iteration: 1

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/256 (72%), Positives = 218/256 (85%)
Query: 46  DLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQS 105
           +LS+P+ RENALLELSK +E   DLAP +W+SFGTIAAL+QEIV+IYP ++PP LT  QS
Sbjct: 11  ELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQS 70
Query: 106 NRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALV 165
           NRVCNALALLQCVASHP+TR  FL AHIPL+LYPFL+T SK+RPFEYLRLTSLGVIGALV
Sbjct: 71  NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALV 130
Query: 166 KVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFF 225
           K D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL YIC T ERF 
Sbjct: 131 KTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS 190
Query: 226 AVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLR 285
            V  +LG MV  L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+D TF+  L+
Sbjct: 191 HVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK 250
Query: 286 EDPTTRRWLQQLLHNV 301
           +D TT+RWL QL+ N+
Sbjct: 251 DDTTTKRWLAQLVKNL 266

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 1e-148
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Length = 268 Back     alignment and structure
 Score =  415 bits (1069), Expect = e-148
 Identities = 185/266 (69%), Positives = 219/266 (82%)

Query: 37  MASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLS 96
                  + +LS+P+ RENALLELSK +E   DLAP +W+SFGTIAAL+QEIV+IYP ++
Sbjct: 2   REKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSIN 61

Query: 97  PPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLT 156
           PP LT  QSNRVCNALALLQCVASHP+TR  FL AHIPL+LYPFL+T SK+RPFEYLRLT
Sbjct: 62  PPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLT 121

Query: 157 SLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDY 216
           SLGVIGALVK D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD GL Y
Sbjct: 122 SLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAY 181

Query: 217 ICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLR 276
           IC T ERF  V  +LG MV  L+++PS+RLLKH++RCYLRLSDNPRA +ALR CLPD L+
Sbjct: 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241

Query: 277 DATFSSCLREDPTTRRWLQQLLHNVG 302
           D TF+  L++D TT+RWL QL+ N+ 
Sbjct: 242 DTTFAQVLKDDTTTKRWLAQLVKNLQ 267
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 100.0
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.06
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.69
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.61
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.45
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.34
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.19
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.17
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 96.89
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.17
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 96.09
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 95.88
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 95.82
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 95.67
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 95.52
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 95.33
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 95.09
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 94.44
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 93.84
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 93.54
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 93.22
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 93.01
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 93.0
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 92.67
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 92.51
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 91.39
3nmz_A458 APC variant protein; protein-protein complex, arma 90.64
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 89.44
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 89.32
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 86.14
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 85.48
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 84.98
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 84.03
3nmz_A458 APC variant protein; protein-protein complex, arma 83.66
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 81.93
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.8e-128  Score=899.04  Aligned_cols=267  Identities=69%  Similarity=1.124  Sum_probs=264.7

Q ss_pred             hhhHHHHHHHhcCCcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHH
Q 042013           36 KMASAEHLVLDLSNPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALL  115 (321)
Q Consensus        36 ~~~~v~q~I~~L~~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLL  115 (321)
                      |+++++|||.||++|++||+||+|||||||+||||||+||||||||++|||||+++||+++||+||+++|||||||||||
T Consensus         1 ~~~~i~qli~~L~~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl   80 (268)
T 2fv2_A            1 DREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL   80 (268)
T ss_dssp             -CHHHHHHHHHTSSTTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHhcCchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCchhhhhhhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchh
Q 042013          116 QCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSEL  195 (321)
Q Consensus       116 Q~vAshpetR~~FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~Gsel  195 (321)
                      ||||||||||++||+||||+||||||||++|+|||||||||||||||||||+||+|||+||++|||||+|||+||+|||+
T Consensus        81 QcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gsel  160 (268)
T 2fv2_A           81 QCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSEL  160 (268)
T ss_dssp             HHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred             HHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhCChhhHHHHHhcCCccc
Q 042013          196 SKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDML  275 (321)
Q Consensus       196 SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~n~rar~aL~~~LP~~L  275 (321)
                      ||||||||+||||+||+||+|+|+|+|||+||++||++||.+++++||+||||||||||+|||||||||++|++|||++|
T Consensus       161 SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~L  240 (268)
T 2fv2_A          161 SKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQL  240 (268)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhcCCHHHHHHHHHHHHHhC
Q 042013          276 RDATFSSCLREDPTTRRWLQQLLHNVG  302 (321)
Q Consensus       276 rd~~f~~~l~~D~~~k~~l~qLl~nl~  302 (321)
                      ||++|++++++|+.+|+|++||+.|++
T Consensus       241 rd~tf~~~l~~D~~~k~~l~qLl~n~~  267 (268)
T 2fv2_A          241 KDTTFAQVLKDDTTTKRWLAQLVKNLQ  267 (268)
T ss_dssp             TSSTTHHHHTSCHHHHHHHHHHHHHSC
T ss_pred             hChHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999986
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.55
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.35
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.23
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.85
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.69
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 93.67
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 92.74
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 90.74
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 86.17
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 81.71
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.028  Score=47.22  Aligned_cols=193  Identities=19%  Similarity=0.210  Sum_probs=124.7

Q ss_pred             CcchHHHHHHHHhhhhhcccchhhHHhhhhchHHHHHHHHHhhcCCCCCCCCChhhhhHHHHHHHHHHHHhc-Cchhhhh
Q 042013           49 NPDLRENALLELSKNKELFQDLAPFVWNSFGTIAALIQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS-HPDTRML  127 (321)
Q Consensus        49 ~p~~Re~AL~eLsk~re~~~~La~~LW~S~Gtia~LLQEIisiYp~Lspp~Lt~~~SnRVCnaLaLLQ~vAs-hpetR~~  127 (321)
                      +.+.|+.|+..|..--+.. |.|- -++..|-+..++.      ..++.+    +..-|. .|...+-.++. +|..+..
T Consensus        30 ~~~~~~~Al~~L~~L~~~~-d~a~-~l~~~gg~~~ll~------~ll~s~----~~~vr~-~A~~~L~~l~~~~~~~~~~   96 (264)
T d1xqra1          30 DQQEREGALELLADLCENM-DNAA-DFCQLSGMHLLVG------RYLEAG----AAGLRW-RAAQLIGTCSQNVAAIQEQ   96 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSH-HHHH-HHHHTTHHHHHHH------TTTTCS----SHHHHH-HHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCH-HHHH-HHHHcCCHHHHHH------HHhCCC----CHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            3456777766665544432 2333 3456676666633      334332    122222 34444555665 6788999


Q ss_pred             hhhhccccccccccccccCCCCcchhhhhhhhhhhhhcccCchHHHHHHhhhchhhhhhhhccccchhhHHHHHHHHHHH
Q 042013          128 FLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKI  207 (321)
Q Consensus       128 FL~a~iplyLyPfL~ttsk~r~~E~LRLtSLGVIgaLvK~dd~evI~fLL~tEiiPLCLriME~GselSKtvAtfIlqKI  207 (321)
                      ++.++..-.|..+|+..    +...+|...++.++.+++.++. ...-+.....+|..++.+..+++-.+..|.+.+..+
T Consensus        97 ~~~~~~i~~Lv~lL~~~----~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l  171 (264)
T d1xqra1          97 VLGLGALRKLLRLLDRD----ACDTVRVKALFAISCLVREQEA-GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL  171 (264)
T ss_dssp             HHHTTHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHcCchHHHHHHhhcC----CCHHHHHHHHHHHHHHhccchh-hHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHH
Confidence            99998777777777532    2345788999999999887554 444556777899999999999999999999999988


Q ss_pred             hccccchhhhhhhhhHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHHHHhhC-ChhhHHHH
Q 042013          208 LLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSD-NPRACDAL  267 (321)
Q Consensus       208 L~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirCYlRLs~-n~rar~aL  267 (321)
                      +..+.....      +|.. ..++..++. +.+.+++.+-+++.++...|+. +|..+...
T Consensus       172 ~~~~~~~~~------~~~~-~~~v~~L~~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  224 (264)
T d1xqra1         172 LVGHPEHKG------TLCS-MGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTDFPQGVREC  224 (264)
T ss_dssp             HHHCGGGHH------HHHH-TTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhccHHHHH------HHHH-hhhHHHHHH-HHcCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            765432221      1111 123444444 4467899999999999999987 44444433
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure