Citrus Sinensis ID: 042174

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MESSCLQISAESPFNSSAFDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSSSVSNKKIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAATATIW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEcccccHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccHHHcccccccHHHHHHHHcccccccEEEEcccccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEcccHHHHccccccccccccccccHHHHHHHHccccccccccccccEcccEEEEEEcccccccccEEEccccHccEEEccHHHHHHHHHHccccccccEEccc
Coil and Loop (DISEMBL)
messclqisaespfnssafddqsfswdellfshnsslpfnindseETLLLDVLAegtttgttkessadsnssnnnnnnnnnnnkedhevtsstsnksyrgvrrrpwgkfAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMrgslatlnfpADMVRESLQEMKykcedgcspvvALKKRHsirkkskssssssvsnkkikmnnqdrdHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCgaatatiw
Flexible Loop (DISEMBL)
MESSCLQISAESPFNSSAFDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEGTTTGttkessadsnssnnnnnnnnnnnkedhevtsstsnksyrgvrrrpwgkfaaeirdstrngVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVValkkrhsirkkskssssssvsnkKIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCgaatatiw
Low Complexity Region (SEG)
MESSCLQISAESPFNSSAFDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEgtttgttKESSADsnssnnnnnnnnnnnKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSaeaaalaydqaaFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALkkrhsirkkskssssssvsnkkikMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAATATIW
Disordered region (IsUnstruct)
***********************FSWDELLFSHNSSLPFNI******LLL******************************************************PWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVA***********************************LAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAAT****
Disordered Region (DISOPRED)
***********************************SLPFNINDSEETLLLD*************************************************VRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPAD*********************************************************************VVVFEDLGADYLEQLLMSSC********
Disordered Region (DISEMBL)
**********ESPFNSSAFDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEGT****************NNNNNNNNNNK*****************RRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALK**********************KMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAATATIW
Disordered Region (DISPRO)
***************************ELLFSHNSSLPFNINDSEETLLLDVLAEGTT************************************NKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPADMVRESLQEMK*******************************SNKKIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAATATI*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSCLQISAESPFNSSAFDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSSSVSNKKIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAATATIW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q8LDC8	218	Ethylene-responsive trans	yes	no	0.716	0.834	0.546	8e-55
Q8VYM0	243	Ethylene-responsive trans	no	no	0.669	0.699	0.541	4e-46
Q9LND1	244	Ethylene-responsive trans	no	no	0.590	0.614	0.527	4e-34
Q40479	233	Ethylene-responsive trans	N/A	no	0.728	0.793	0.371	1e-27
O04681	161	Pathogenesis-related gene	N/A	no	0.488	0.770	0.466	1e-26
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.468	0.502	0.449	2e-26
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.437	0.454	0.451	5e-25
Q8L9K1	226	Ethylene-responsive trans	no	no	0.523	0.588	0.423	3e-24
O80337	268	Ethylene-responsive trans	no	no	0.468	0.444	0.429	4e-24
O80338	243	Ethylene-responsive trans	no	no	0.476	0.497	0.472	1e-23

>sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2

 Score =  213 bits (543), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 117/214 (54%), Positives = 145/214 (67%), Gaps = 32/214 (14%)

Query: 37  LPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHEVTSSTSNK 96
           LPFN NDSEE  L  ++ +     +T+++  DS+S +    +          V+S  S K
Sbjct: 36  LPFNENDSEEMFLYGLIEQ-----STQQTYIDSDSQDLPIKS----------VSSRKSEK 80

Query: 97  SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPA 156
           SYRGVRRRPWGKFAAEIRDSTRNG+RVWLGTF+SAE AALAYDQAAFSMRGS A LNF A
Sbjct: 81  SYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSA 140

Query: 157 DMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSSSVSNKKIKMNNQDRDHHQLA 216
           + V+ESL E+KY  EDGCSPVVALK++HS+R++        ++NKK K  + D DH  + 
Sbjct: 141 ERVQESLSEIKYTYEDGCSPVVALKRKHSMRRR--------MTNKKTK--DSDFDHRSVK 190

Query: 217 VAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAAT 250
           +        NVVVFEDLG  YLE+LL SS  + T
Sbjct: 191 L-------DNVVVFEDLGEQYLEELLGSSENSGT 217

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato).
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYM0|ERF93_ARATH Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1

 Score =  184 bits (468), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 123/179 (68%), Gaps = 9/179 (5%)

Query: 77  NNNNNNNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAAL 136
            N + +N E+ E       +SYRGVR+RPWGKFAAEIRDSTRNG+RVWLGTFD AE AAL
Sbjct: 65  QNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAAL 124

Query: 137 AYDQAAFSMRGSLATLNFPADMVRESLQEMK-YKCEDGCSPVVALKKRHSIRKKSKSSSS 195
           AYDQAAF+ +GSLATLNFP ++VRESL++M+     DG SPV+ALK++HS+R + +    
Sbjct: 125 AYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRGKKR 184

Query: 196 SSVSNKKIKMNNQDRDHHQLAV--------AVGSQLSQNVVVFEDLGADYLEQLLMSSC 246
           SS S+     ++        +         +V  Q S  +VVFEDLGA+YLEQLLMSSC
Sbjct: 185 SSSSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMSSC 243

May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LND1|ERF94_ARATH Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 114/165 (69%), Gaps = 15/165 (9%)

Query: 96  KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFP 155
           KSYRGVR+RPWGKFAAEIRDSTR G+RVWLGTFD+AEAAALAYDQAAF+++GSLA LNFP
Sbjct: 80  KSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139

Query: 156 ADMVRESLQEMK-YKCEDGCSPVVALKKRHSIRKKSKSSSS-------------SSVSNK 201
           AD+V ESL++M+     DG SPV+ALK++HS+R + +                 SS  + 
Sbjct: 140 ADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSYSS 199

Query: 202 KIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSC 246
               ++      + +V +  + +  +VV EDLGA+YLE+ LM SC
Sbjct: 200 SSSSSSLSSRSRKQSVVMTQESNTTLVVLEDLGAEYLEE-LMRSC 243

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 117/229 (51%), Gaps = 44/229 (19%)

Query: 37  LPFNINDSEETLLLDVLAEGTTTG------TTKESSADSNSSNNNNNNNNNNNKEDHEVT 90
           LP  ++DSE+ ++  +L++  T G      T+ E  A+             +     E T
Sbjct: 28  LPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAETT 87

Query: 91  SSTS----NKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMR 146
           ++ +     + YRGVR+RPWGKFAAEIRD  +NG RVWLGT+++AE AALAYD+AA+ MR
Sbjct: 88  TAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMR 147

Query: 147 GSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSS---------- 196
           GS A LNFP    R  L E +        PV    KR S    S S SS+          
Sbjct: 148 GSKALLNFPH---RIGLNEPE--------PVRLTAKRRSPEPASSSISSALENGSPKRRR 196

Query: 197 -SVSNKKIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMS 244
            +V+ KK ++  Q R +   A+ VG Q+ Q  V          EQLL+S
Sbjct: 197 KAVAAKKAELEVQSRSN---AMQVGCQMEQFPVG---------EQLLVS 233

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 80/135 (59%), Gaps = 11/135 (8%)

Query: 29  LLFSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHE 88
           ++ +  S LP N NDS+E +L +VL E            +     NN             
Sbjct: 1   MVPTPQSDLPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNN-----------IL 49

Query: 89  VTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGS 148
                  K YRGVRRRPWGK+AAEIRDS R+G RVWLGTF++AE AALAYD+AAF MRG+
Sbjct: 50  RPLQCIGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGA 109

Query: 149 LATLNFPADMVRESL 163
            A LNFP+++V  S+
Sbjct: 110 KALLNFPSEIVNASV 124

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 81/129 (62%), Gaps = 10/129 (7%)

Query: 37  LPFNINDSEETLLLDVLAEGTTTG------TTKESSADSNSSNNNNNNNNNNNKEDHEVT 90
           LP  ++DSE+ ++  +L++  TTG      T+ E  A+         +   +     E T
Sbjct: 32  LPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETT 91

Query: 91  SSTS----NKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMR 146
           ++ +     + YRGVR+RPWGKFAAEIRD  +NG RVWLGT+++AE AALAYD+AA+ MR
Sbjct: 92  TAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMR 151

Query: 147 GSLATLNFP 155
           GS A LNFP
Sbjct: 152 GSKALLNFP 160

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  114 bits (286), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 76/133 (57%), Gaps = 22/133 (16%)

Query: 37  LPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHEVTSSTS-- 94
           LP  +NDSE+ ++   L +  + G T         SN  +       +E+ E   STS  
Sbjct: 40  LPLKVNDSEDMVIYGFLQDAFSIGWT--------PSNLTSEEVKLEPREEIEPAMSTSVS 91

Query: 95  ------------NKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAA 142
                        + YRGVR+RPWGKFAAEIRD  +NG RVWLGT++SAE AALAY +AA
Sbjct: 92  PPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAA 151

Query: 143 FSMRGSLATLNFP 155
           F MRG+ A LNFP
Sbjct: 152 FRMRGTKALLNFP 164

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 4/137 (2%)

Query: 19  FDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNN 78
           F + SFS + +L  + S LP +++DS++  + + L +  ++G T      ++ +  N   
Sbjct: 17  FRNPSFS-NVILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPP 75

Query: 79  NNNNNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAY 138
                K             YRGVRRRPWGKFAAEIRD  +NG RVWLGT+++ E AA+AY
Sbjct: 76  AT---KASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAY 132

Query: 139 DQAAFSMRGSLATLNFP 155
           D+AAF +RGS A LNFP
Sbjct: 133 DRAAFQLRGSKAKLNFP 149

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 76/135 (56%), Gaps = 16/135 (11%)

Query: 37  LPFNINDSEETLLLDVLAEGTTTG----------------TTKESSADSNSSNNNNNNNN 80
           LP   NDSE+ L+  +L +    G                + K  + +S ++ ++     
Sbjct: 71  LPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKK 130

Query: 81  NNNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQ 140
                     ++   K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++AE AALAYD+
Sbjct: 131 EKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDR 190

Query: 141 AAFSMRGSLATLNFP 155
           AAF MRGS A LNFP
Sbjct: 191 AAFRMRGSRALLNFP 205

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 74/129 (57%), Gaps = 8/129 (6%)

Query: 35  SSLPFNINDSEETLLLDVLAEGTTTGTTK-------ESSADSNSSNNNNNNNNNNNKEDH 87
             LP   NDSE+ L+  +L +     T+        +  A       N        K+  
Sbjct: 46  GGLPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAI 105

Query: 88  EVT-SSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMR 146
            VT ++   K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++AE AALAYD AAF MR
Sbjct: 106 PVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMR 165

Query: 147 GSLATLNFP 155
           GS A LNFP
Sbjct: 166 GSRALLNFP 174

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
300079016	216	ethylene response factor 10 [Actinidia d	0.803	0.944	0.587	2e-64
350535226	245	ethylene responsive element binding prot	0.791	0.820	0.539	8e-56
224082796	228	AP2/ERF domain-containing transcription	0.744	0.828	0.580	6e-55
225437872	223	PREDICTED: ethylene-responsive transcrip	0.744	0.847	0.571	1e-54
147854608	226	hypothetical protein VITISV_012060 [Viti	0.744	0.836	0.571	1e-54
225437874	226	PREDICTED: ethylene-responsive transcrip	0.744	0.836	0.566	8e-54
255583194	225	Ethylene-responsive transcription factor	0.807	0.911	0.566	2e-53
15229405	218	ethylene-responsive transcription factor	0.716	0.834	0.546	5e-53
297831062	218	ATERF1/ERF1 [Arabidopsis lyrata subsp. l	0.716	0.834	0.542	3e-52
350539884	240	transcription factor TSRF1 [Solanum lyco	0.736	0.779	0.551	7e-52

>gi|300079016|gb|ADJ67439.1| ethylene response factor 10 [Actinidia deliciosa]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 138/235 (58%), Positives = 165/235 (70%), Gaps = 31/235 (13%)

Query: 11  ESPFNSSAFDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSN 70
           +SP  SS    QSFSWD+LLF HNS LPFN+NDSEE LLL VLAEG +    KESS   +
Sbjct: 13  DSP-ESSLGSPQSFSWDDLLFYHNS-LPFNVNDSEEMLLLGVLAEGAS----KESSETIS 66

Query: 71  SSNNNNNNNNNNNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDS 130
           S         +  K+   +      KSYRGVRRRPWGKFAAEIRDSTRNG+RVWLGTFDS
Sbjct: 67  SGGIKEEEVTSVAKDQKPIK----EKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFDS 122

Query: 131 AEAAALAYDQAAFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKS 190
           AE AALAYDQAAFS+RGS+A LNFP + V++SL+EMKY CE+GCSPVVALKKRHS+R+  
Sbjct: 123 AEEAALAYDQAAFSVRGSMAVLNFPVERVKDSLREMKYGCEEGCSPVVALKKRHSMRE-- 180

Query: 191 KSSSSSSVSNKKIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSS 245
           +SS   + +NK++K+     DH              VV+ EDLGA+YLE+LL SS
Sbjct: 181 RSSYKRNKANKEVKV-----DH--------------VVILEDLGAEYLEELLNSS 216

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535226|ref|NP_001234695.1| ethylene responsive element binding protein [Solanum lycopersicum] gi|25992126|gb|AAN77067.1| ethylene responsive element binding protein [Solanum lycopersicum]

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 149/226 (65%), Gaps = 25/226 (11%)

Query: 31  FSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHEVT 90
           F+  S LPFN+NDSEE LL  VL         +E+++++ +S+        +  E  E  
Sbjct: 30  FNTQSYLPFNVNDSEEMLLFGVL-----NAAHEETTSETVTSHRVKEEEVTSESEVIEAI 84

Query: 91  SSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLA 150
            +   KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAE AALAYDQAAFSMRG+ A
Sbjct: 85  PA-KEKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEDAALAYDQAAFSMRGNSA 143

Query: 151 TLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKK---SKSSSSSSVSNKKIKMNN 207
            LNFP + VR+SL++MK   +D CSPVVALKKRHS+RK+   SK  +S S   +++KM N
Sbjct: 144 ILNFPVETVRDSLRDMKCHVDDDCSPVVALKKRHSMRKRSTNSKKVNSISKVVREVKMEN 203

Query: 208 QDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAATATI 253
            +                NVVVFEDLGADYLEQLL +SC      +
Sbjct: 204 VN----------------NVVVFEDLGADYLEQLLSTSCQVIKVVV 233

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082796|ref|XP_002306842.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222856291|gb|EEE93838.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 134/231 (58%), Positives = 159/231 (68%), Gaps = 42/231 (18%)

Query: 23  SFSWDELLFSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNN 82
           SFSWDELLF  NS LPFN NDSEE +L + LA G    +++ +S+              +
Sbjct: 27  SFSWDELLFQSNS-LPFNTNDSEEMVLFNALANGPPKESSESNSS--------------S 71

Query: 83  NKEDHEVTSSTSNK-------SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAA 135
             ++ EVTS+   +       SYRGVRRRPWGK+AAEIRDSTRNG+RVWLGTFDSAEAAA
Sbjct: 72  GIKEEEVTSNAKEEEEAKREKSYRGVRRRPWGKYAAEIRDSTRNGIRVWLGTFDSAEAAA 131

Query: 136 LAYDQAAFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSS 195
           LAYDQAAFSMRGS+A LNFP +MVRESLQ+M Y+CEDGCSPVVALK++HS+R+KSKS   
Sbjct: 132 LAYDQAAFSMRGSMAVLNFPVEMVRESLQDMNYRCEDGCSPVVALKRKHSMRRKSKS--- 188

Query: 196 SSVSNKKIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSC 246
                 K K+N            V     QNVVV EDLGADYLE+LL +SC
Sbjct: 189 -----WKTKVNQ-----------VPHSRPQNVVVLEDLGADYLEELL-NSC 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437872|ref|XP_002264523.1| PREDICTED: ethylene-responsive transcription factor 1B [Vitis vinifera]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 152/224 (67%), Gaps = 35/224 (15%)

Query: 26  WDELLFSHNSSLPFNINDSEETLLLDVLAEG----TTTGTTKESSADSNSSNNNNNNNNN 81
           WDE LF HNS LPFNINDS+E +L D+LAEG    + T ++   +A      +N      
Sbjct: 31  WDEPLFHHNS-LPFNINDSDEMILFDMLAEGARDSSETASSVGGAAKEEEVTSNAKEPTP 89

Query: 82  NNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQA 141
           N KE          K+YRGVR+RPWGKFAAEIRDSTR+GVRVWLGTFDSAEAAALAYDQA
Sbjct: 90  NKKE--------KEKTYRGVRKRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQA 141

Query: 142 AFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSSSVSNK 201
           AFSMRG++A LNFP + V ESL+++KY CEDG SPVVALK+RHS+R+KS    + S   K
Sbjct: 142 AFSMRGTMAVLNFPVERVVESLRDIKYACEDGGSPVVALKRRHSMRRKSTGRKNKS---K 198

Query: 202 KIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSS 245
           ++K                   +QNVVV EDLGADYLEQLL SS
Sbjct: 199 EVK-------------------AQNVVVLEDLGADYLEQLLCSS 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854608|emb|CAN78568.1| hypothetical protein VITISV_012060 [Vitis vinifera]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 152/224 (67%), Gaps = 35/224 (15%)

Query: 26  WDELLFSHNSSLPFNINDSEETLLLDVLAEG----TTTGTTKESSADSNSSNNNNNNNNN 81
           WDE LF HNS LPFNINDS+E +L D+LAEG    + T ++   +A      +N      
Sbjct: 31  WDEPLFHHNS-LPFNINDSDEMILFDMLAEGARDSSETASSVGGAAKEEEVTSNAKEPTP 89

Query: 82  NNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQA 141
           N KE          K+YRGVR+RPWGKFAAEIRDSTR+GVRVWLGTFDSAEAAALAYDQA
Sbjct: 90  NKKE--------KEKTYRGVRKRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQA 141

Query: 142 AFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSSSVSNK 201
           AFSMRG++A LNFP + V ESL+++KY CEDG SPVVALK+RHS+R+KS    + S   K
Sbjct: 142 AFSMRGTMAVLNFPVERVVESLRDIKYACEDGGSPVVALKRRHSMRRKSTGRKNKS---K 198

Query: 202 KIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSS 245
           ++K                   +QNVVV EDLGADYLEQLL SS
Sbjct: 199 EVK-------------------AQNVVVLEDLGADYLEQLLCSS 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437874|ref|XP_002264656.1| PREDICTED: ethylene-responsive transcription factor 1B [Vitis vinifera]

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/224 (56%), Positives = 152/224 (67%), Gaps = 35/224 (15%)

Query: 26  WDELLFSHNSSLPFNINDSEETLLLDVLAEG----TTTGTTKESSADSNSSNNNNNNNNN 81
           WDE LF HNS LPFNINDS+E +L D+LAEG    + T ++   +A      +N      
Sbjct: 31  WDEPLFHHNS-LPFNINDSDEMILFDMLAEGARDSSETASSVGGAAKEEEVTSNAKEPTP 89

Query: 82  NNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQA 141
           N KE          K+YRGVR+RPWGKFAAEIRDSTR+GVRVWLGTFDSAEAAALAYDQA
Sbjct: 90  NKKE--------KEKTYRGVRKRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQA 141

Query: 142 AFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSSSVSNK 201
           AFSMRG++A LNFP + V ESL+++KY CEDG SPVVALK+RHS+R+KS    + S   K
Sbjct: 142 AFSMRGTMAVLNFPVERVVESLRDIKYACEDGGSPVVALKRRHSMRRKSTGRKNKS---K 198

Query: 202 KIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSS 245
           ++K                   +QNVVV E+LGADYLEQLL SS
Sbjct: 199 EVK-------------------AQNVVVLENLGADYLEQLLCSS 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583194|ref|XP_002532362.1| Ethylene-responsive transcription factor 1B, putative [Ricinus communis] gi|223527918|gb|EEF30005.1| Ethylene-responsive transcription factor 1B, putative [Ricinus communis]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/233 (56%), Positives = 168/233 (72%), Gaps = 28/233 (12%)

Query: 18  AFDD-QSFSW----DELLFSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSS 72
           +FD  Q FSW    D  LF   SSLPF+ NDSE+ +L DVL++ T     ++ S++SNS+
Sbjct: 16  SFDSLQPFSWELEDDGFLFHPPSSLPFDCNDSEQMILFDVLSKATN----RDQSSESNST 71

Query: 73  NNNNNNNNNNNKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAE 132
           ++       ++ ++ EV++    KSYRGVR+RPWGK+AAEIRDSTRNG+RVWLGTFDSAE
Sbjct: 72  SSRVKEEEVSSSKEEEVSTGKKEKSYRGVRKRPWGKYAAEIRDSTRNGIRVWLGTFDSAE 131

Query: 133 AAALAYDQAAFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKS 192
           AAALAYDQAAFSMRGS+A LNFP +MVRES+QE+KY+CEDGCSPVVALK+RHS+R+ S S
Sbjct: 132 AAALAYDQAAFSMRGSMAILNFPVEMVRESMQEIKYRCEDGCSPVVALKRRHSMRRNSSS 191

Query: 193 SSSSSVSNKKIKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSS 245
           + S      K K  N +R             +Q+VVV EDLGA+YLE+LL SS
Sbjct: 192 TES------KGKEVNNNR-------------TQHVVVLEDLGAEYLEELLSSS 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229405|ref|NP_188965.1| ethylene-responsive transcription factor 1B [Arabidopsis thaliana] gi|57012702|sp|Q8LDC8.2|ERF92_ARATH RecName: Full=Ethylene-responsive transcription factor 1B; Short=AtERF1B; AltName: Full=Ethylene-responsive element-binding factor 1B; Short=EREBP-1B gi|16226399|gb|AAL16158.1|AF428390_1 AT3g23240/K14B15_13 [Arabidopsis thaliana] gi|4128208|gb|AAD03544.1| ethylene response factor 1 [Arabidopsis thaliana] gi|4128210|gb|AAD03545.1| ethylene response factor 1 [Arabidopsis thaliana] gi|7939534|dbj|BAA95737.1| ethylene response DNA binding protein-like [Arabidopsis thaliana] gi|22137228|gb|AAM91459.1| AT3g23240/K14B15_13 [Arabidopsis thaliana] gi|332643217|gb|AEE76738.1| ethylene-responsive transcription factor 1B [Arabidopsis thaliana]

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 117/214 (54%), Positives = 145/214 (67%), Gaps = 32/214 (14%)

Query: 37  LPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHEVTSSTSNK 96
           LPFN NDSEE  L  ++ +     +T+++  DS+S +    +          V+S  S K
Sbjct: 36  LPFNENDSEEMFLYGLIEQ-----STQQTYIDSDSQDLPIKS----------VSSRKSEK 80

Query: 97  SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPA 156
           SYRGVRRRPWGKFAAEIRDSTRNG+RVWLGTF+SAE AALAYDQAAFSMRGS A LNF A
Sbjct: 81  SYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSA 140

Query: 157 DMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSSSVSNKKIKMNNQDRDHHQLA 216
           + V+ESL E+KY  EDGCSPVVALK++HS+R++        ++NKK K  + D DH  + 
Sbjct: 141 ERVQESLSEIKYTYEDGCSPVVALKRKHSMRRR--------MTNKKTK--DSDFDHRSVK 190

Query: 217 VAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAAT 250
           +        NVVVFEDLG  YLE+LL SS  + T
Sbjct: 191 L-------DNVVVFEDLGEQYLEELLGSSENSGT 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831062|ref|XP_002883413.1| ATERF1/ERF1 [Arabidopsis lyrata subsp. lyrata] gi|297329253|gb|EFH59672.1| ATERF1/ERF1 [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 138/214 (64%), Gaps = 32/214 (14%)

Query: 37  LPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHEVTSSTSNK 96
           LPFN NDSEE  L  ++ +               S+  N   +N  +     V+S  S K
Sbjct: 36  LPFNENDSEEMFLYGLIKQ---------------STQRNFIESNLQDLPVKSVSSRNSEK 80

Query: 97  SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPA 156
           SYRGVRRRPWGKFAAEIRDSTRNG+RVWLGTF+SAE AALAYDQAAFSMRGS A LNF  
Sbjct: 81  SYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSP 140

Query: 157 DMVRESLQEMKYKCEDGCSPVVALKKRHSIRKKSKSSSSSSVSNKKIKMNNQDRDHHQLA 216
           + V+ESL EMKY  EDGCSPVVALK++HS+R++         +NKK K  + D DH  + 
Sbjct: 141 ERVQESLSEMKYTYEDGCSPVVALKRKHSMRRRK--------TNKKTK--DSDFDHRSVK 190

Query: 217 VAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAAT 250
           +        NVVVFEDLG  YLE+LL SS  + T
Sbjct: 191 L-------DNVVVFEDLGEQYLEELLGSSENSGT 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539884|ref|NP_001234818.1| transcription factor TSRF1 [Solanum lycopersicum] gi|23452024|gb|AAN32899.1|AF494201_1 transcription factor TSRF1 [Solanum lycopersicum]

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 117/212 (55%), Positives = 142/212 (66%), Gaps = 25/212 (11%)

Query: 31  FSHNSSLPFNINDSEETLLLDVLAEGTTTGTTKESSADSNSSNNNNNNNNNNNKEDHEVT 90
           F+  S LPFN+NDSEE LL  VL         +E+++++ +S+        +  E  E  
Sbjct: 30  FNTQSYLPFNVNDSEEMLLFGVL-----NAAHEETTSETVTSHRVKEEEVTSESEVIEAI 84

Query: 91  SSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLA 150
            +   KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAE AALAYDQAAFSMRG+ A
Sbjct: 85  PA-KEKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEDAALAYDQAAFSMRGNSA 143

Query: 151 TLNFPADMVRESLQEMKYKCEDGCSPVVALKKRHSIRKK---SKSSSSSSVSNKKIKMNN 207
            LNFP + VR+SL++MK   +D CSPVVALKKRHS+RK+   SK  +S S   +++KM N
Sbjct: 144 ILNFPVETVRDSLRDMKCHVDDDCSPVVALKKRHSMRKRSTNSKKVNSISKVVREVKMEN 203

Query: 208 QDRDHHQLAVAVGSQLSQNVVVFEDLGADYLE 239
            +                NVVVFEDLGADYLE
Sbjct: 204 VN----------------NVVVFEDLGADYLE 219

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2086223	218	ERF1 "ethylene response factor	0.606	0.706	0.5	4e-39
TAIR|locus:2042496	243	ERF15 "ethylene-responsive ele	0.637	0.666	0.450	3.4e-34
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.614	0.639	0.416	3e-31
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.279	0.234	0.563	2.8e-20
TAIR|locus:2124504	303	AT4G18450 [Arabidopsis thalian	0.287	0.240	0.5	3.2e-19
TAIR|locus:2176511	131	AT5G43410 [Arabidopsis thalian	0.228	0.442	0.620	2.1e-18
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.251	0.460	0.562	3.4e-18
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.562	0.632	0.344	1.4e-16
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.468	0.489	0.385	2.3e-16
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.311	0.357	0.5	2.3e-16

TAIR|locus:2086223 ERF1 "ethylene response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 86/172 (50%), Positives = 96/172 (55%)

Query:     9 SAESPFNSSAFDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEXXXXXXXKESSAD 68
             S  SP  S      SFS      S+N SLPFN NDSEE  L  ++ +          S D
Sbjct:    11 SGFSPEYSIGSSPDSFSSSS---SNNYSLPFNENDSEEMFLYGLIEQSTQQTYIDSDSQD 67

Query:    69 XXXXXXXXXXXXXXXKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTF 128
                                 V+S  S KSYRGVRRRPWGKFAAEIRDSTRNG+RVWLGTF
Sbjct:    68 LPIKS---------------VSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTF 112

Query:   129 DSXXXXXXXXXXXXFSMRGSLATLNFPADMVRESLQEMKYKCEDGCSPVVAL 180
             +S            FSMRGS A LNF A+ V+ESL E+KY  EDGCSPVVAL
Sbjct:   113 ESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVAL 164

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0006952 "defense response" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;TAS

TAIR|locus:2042496 ERF15 "ethylene-responsive element binding factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 77/171 (45%), Positives = 93/171 (54%)

Query:    85 EDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFS 144
             E+ E       +SYRGVR+RPWGKFAAEIRDSTRNG+RVWLGTFD             F+
Sbjct:    73 EEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFA 132

Query:   145 MRGSLATLNFPADMVRESLQEMK-YKCEDGCSPVVALXXXXXXX--------XXXXXXXX 195
              +GSLATLNFP ++VRESL++M+     DG SPV+AL                       
Sbjct:   133 TKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRGKKRSSSSSSSS 192

Query:   196 XXXXXXXXXMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSC 246
                       +           +V  Q S  +VVFEDLGA+YLEQLLMSSC
Sbjct:   193 SNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMSSC 243

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
 Identities = 72/173 (41%), Positives = 92/173 (53%)

Query:    89 VTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFSMRGS 148
             V +    KSYRGVR+RPWGKFAAEIRDSTR G+RVWLGTFD+            F+++GS
Sbjct:    73 VAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGS 132

Query:   149 LATLNFPADMVRESLQEMK-YKCEDGCSPVVALX--------------XXXXXXXXXXXX 193
             LA LNFPAD+V ESL++M+     DG SPV+AL                           
Sbjct:   133 LAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPS 192

Query:   194 XXXXXXXXXXXMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSC 246
                         +   R   Q +V +  + +  +VV EDLGA+YLE+L M SC
Sbjct:   193 SSSSYSSSSSSSSLSSRSRKQ-SVVMTQESNTTLVVLEDLGAEYLEEL-MRSC 243

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 210 (79.0 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 40/71 (56%), Positives = 45/71 (63%)

Query:    85 EDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFS 144
             E   V  ++  K YRGVR+RPWGKFAAEIRD  +NG RVWLGTFDS            + 
Sbjct:   136 EGEAVAVASRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYR 195

Query:   145 MRGSLATLNFP 155
             MRGS A LNFP
Sbjct:   196 MRGSRALLNFP 206

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2124504 AT4G18450 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
 Identities = 37/74 (50%), Positives = 47/74 (63%)

Query:    92 STSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFSMRGSL-A 150
             S   + YRGVR+RPWGKFAAEIRDSTRNGVRVWLGTF +              +RG+  A
Sbjct:   104 SCKTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKA 163

Query:   151 TLNFPADMVRESLQ 164
               NF  + V ++++
Sbjct:   164 HTNFQLETVIKAME 177

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2176511 AT5G43410 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 36/58 (62%), Positives = 41/58 (70%)

Query:    98 YRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFSMRGSLATLNFP 155
             YRGVRRRPWGK+AAEIRDS ++G RVWLGTFD+            +SMRG  A LNFP
Sbjct:    15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFP 72

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 36/64 (56%), Positives = 43/64 (67%)

Query:    92 STSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFSMRGSLAT 151
             +T+   YRGVR+RPWGK+AAEIRDS R+G RVWLGTF++            F MRG  A 
Sbjct:     8 NTNEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAI 67

Query:   152 LNFP 155
             LNFP
Sbjct:    68 LNFP 71

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 51/148 (34%), Positives = 69/148 (46%)

Query:     9 SAESPFNSSA-FDDQSFSWDELLFSHNSSLPFNINDSEETLLLDVLAEXXXXXXXKESSA 67
             S  +  NS   F + SFS + +L  + S LP +++DS++  + + L +         S  
Sbjct:     6 SVNNGVNSRMYFRNPSFS-NVILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTP-SVP 63

Query:    68 DXXXXXXXXXXXXXXXKEDHEVTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGT 127
                                H          YRGVRRRPWGKFAAEIRD  +NG RVWLGT
Sbjct:    64 PVTSPAEENKPPATKASGSH--APRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGT 121

Query:   128 FDSXXXXXXXXXXXXFSMRGSLATLNFP 155
             +++            F +RGS A LNFP
Sbjct:   122 YETPEDAAVAYDRAAFQLRGSKAKLNFP 149

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 49/127 (38%), Positives = 62/127 (48%)

Query:    37 LPFNINDSEETLLLDVLAEXXXXXXXKESSA---DXXXXXXXXXXXXXXXKEDHE----V 89
             LP   NDSE+ L+  +L +           +   D               +E  +    V
Sbjct:    48 LPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPV 107

Query:    90 T-SSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFSMRGS 148
             T ++   K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++            F MRGS
Sbjct:   108 TETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGS 167

Query:   149 LATLNFP 155
              A LNFP
Sbjct:   168 RALLNFP 174

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 40/80 (50%), Positives = 48/80 (60%)

Query:    89 VTSSTSNKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFSMRGS 148
             V      + YRGVRRRPWGK+AAEIRD  + GVRVWLGTFD+            F +RGS
Sbjct:    63 VVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGS 122

Query:   149 LATLNFPADMVR-ESLQEMK 167
              A LNFP +  + E L + K
Sbjct:   123 KAILNFPLEAGKHEDLGDNK 142

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LDC8	ERF92_ARATH	No assigned EC number	0.5467	0.7165	0.8348	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007520001 SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (223 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-32
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	7e-30
pfam00847	53	pfam00847, AP2, AP2 domain	1e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  112 bits (282), Expect = 3e-32
 Identities = 41/59 (69%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 97  SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFP 155
            YRGVR+RPWGK+ AEIRD ++ G RVWLGTFD+AE AA AYD+AAF  RG  A LNFP
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  106 bits (266), Expect = 7e-30
 Identities = 40/62 (64%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 96  KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFP 155
             YRGVR+RPWGK+ AEIRD    G R+WLGTFD+AE AA AYD+AA  +RGS A LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDP-SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

Query: 156 AD 157
             
Sbjct: 60  DS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 63.1 bits (154), Expect = 1e-13
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 98  YRGVRRRP-WGKFAAEIRD-STRNGVRVWLGTFDSAEAAALAYDQAAFSMRG 147
           Y+GVR    WG++ AEIRD   +   R  LGTF + EAA  A   A   +RG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEEAAR-AAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.53
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.24
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	82.42

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=5.3e-21  Score=137.85  Aligned_cols=61  Identities=66%  Similarity=1.164  Sum_probs=57.0

Q ss_pred             CceeEEEECCCCcEEEEEeeCCCCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 042174           96 KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPAD  157 (254)
Q Consensus        96 S~YRGV~~r~~GKW~A~Ir~~~~~Gkrv~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~  157 (254)
                      |+|+||+++++|||+|+|+++.+ |+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~-gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCC-CceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999999999999999999542 89999999999999999999999999999999999963

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=5e-21  Score=139.72  Aligned_cols=63  Identities=65%  Similarity=1.153  Sum_probs=59.5

Q ss_pred             ceeEEEECCCCcEEEEEeeCCCCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 042174           97 SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPADMVR  160 (254)
Q Consensus        97 ~YRGV~~r~~GKW~A~Ir~~~~~Gkrv~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~~y~  160 (254)
                      +|+||+++++|||+|+|+++. +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999999999999999965 489999999999999999999999999999999999999885

>PHA00280 putative NHN endonuclease

Probab=99.53  E-value=1.3e-14  Score=119.60  Aligned_cols=62  Identities=15%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             ccccCCCCCCCceeEEEECCC-CcEEEEEeeCCCCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCCC
Q 042174           86 DHEVTSSTSNKSYRGVRRRPW-GKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLAT  151 (254)
Q Consensus        86 ~~~~~~~~~~S~YRGV~~r~~-GKW~A~Ir~~~~~Gkrv~LGtFdT~EEAArAYD~AA~~~~G~~A~  151 (254)
                      .+...++.++|+|+||++++. |||+|+|+.   +||+++||.|+++|+|+.||+ ++.+++|.+|.
T Consensus        57 ~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         57 WNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             cccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            334556778999999997765 999999998   899999999999999999997 77889999874

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.24  E-value=2.1e-11  Score=85.73  Aligned_cols=53  Identities=32%  Similarity=0.446  Sum_probs=46.6

Q ss_pred             CceeEEEECCC-CcEEEEEeeCCCCC--eEEecCCCCcHHHHHHHHHHHHHHhcCC
Q 042174           96 KSYRGVRRRPW-GKFAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFSMRGS  148 (254)
Q Consensus        96 S~YRGV~~r~~-GKW~A~Ir~~~~~G--krv~LGtFdT~EEAArAYD~AA~~~~G~  148 (254)
                      |+|+||++++. ++|+|+|++...+|  ++++||.|++++||++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999998775 99999999954444  9999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=82.42  E-value=4.9  Score=27.31  Aligned_cols=38  Identities=13%  Similarity=0.103  Sum_probs=28.9

Q ss_pred             cEEEEEe--eC-CCCCeEEecCCCCcHHHHHHHHHHHHHHh
Q 042174          108 KFAAEIR--DS-TRNGVRVWLGTFDSAEAAALAYDQAAFSM  145 (254)
Q Consensus       108 KW~A~Ir--~~-~~~Gkrv~LGtFdT~EEAArAYD~AA~~~  145 (254)
                      +|...|.  ++ +.+.++++-+.|.|..||-.+..++...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5778883  33 34447789999999999999988876655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-17
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		5e-17

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 41/60 (68%)
Query: 96  KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFSMRGSLATLNFP 155
           K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++            F MRGS A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 41/60 (68%)
Query: 96  KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXXFSMRGSLATLNFP 155
           K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++            F MRGS A LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
1gcc_A	63	Ethylene responsive element binding factor 1; tran	8e-43

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  138 bits (351), Expect = 8e-43
 Identities = 47/63 (74%), Positives = 53/63 (84%)

Query: 96  KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFP 155
           K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++AE AALAYD+AAF MRGS A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 156 ADM 158
             +
Sbjct: 61  LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	89.02

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=3.8e-26  Score=166.88  Aligned_cols=61  Identities=75%  Similarity=1.280  Sum_probs=58.6

Q ss_pred             ceeEEEECCCCcEEEEEeeCCCCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 042174           97 SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPAD  157 (254)
Q Consensus        97 ~YRGV~~r~~GKW~A~Ir~~~~~Gkrv~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~  157 (254)
                      +||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|++.++|..|.||||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999887799999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=89.02  E-value=0.24  Score=37.34  Aligned_cols=29  Identities=21%  Similarity=0.170  Sum_probs=23.3

Q ss_pred             CCCCceeEEEECCC-CcEEEEEeeCCCCCeEEe
Q 042174           93 TSNKSYRGVRRRPW-GKFAAEIRDSTRNGVRVW  124 (254)
Q Consensus        93 ~~~S~YRGV~~r~~-GKW~A~Ir~~~~~Gkrv~  124 (254)
                      ..+|+|.||++.+. +.|.|.-.+   +|+|..
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrs   32 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRRS   32 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEee
Confidence            35799999998877 999999988   566643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	8e-34

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  114 bits (288), Expect = 8e-34
 Identities = 47/60 (78%), Positives = 52/60 (86%)

Query: 96  KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFP 155
           K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++AE AALAYD+AAF MRGS A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=8.9e-27  Score=169.07  Aligned_cols=61  Identities=75%  Similarity=1.280  Sum_probs=58.7

Q ss_pred             ceeEEEECCCCcEEEEEeeCCCCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 042174           97 SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPAD  157 (254)
Q Consensus        97 ~YRGV~~r~~GKW~A~Ir~~~~~Gkrv~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~  157 (254)
                      +||||+++++|||+|+|+++..+++++|||+|+|+||||+|||+||+.++|..+.+|||.+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999999999999999999888899999999999999999999999999999999999975