Citrus Sinensis ID: 042204

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
FYSGNRALNLPSLERLLVDDCTNMKIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQPGPQPGLPHAGNEGEDALGSNVITNGKVY
ccccccccccccHHHHHHccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
********NLPSLERLLVDDCTNMK******LSTPMLH*****M*DEACWAWKEGLNTTIEQVNLKKESFLRKR*****************LNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVG*******************************
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FYSGNRALNLPSLERLLVDDCTNMKIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQPGPQPGLPHAGNEGEDALGSNVITNGKVY

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Importin subunit alpha-1a Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.confidentQ71VM4
Importin subunit alpha-B Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.probableQ76P29
Importin subunit alpha Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.probableO22478

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2JDQ, chain A
Confidence level:very confident
Coverage over the Query: 101-525
View the alignment between query and template
View the model in PyMOL
Template: 4B8J, chain A
Confidence level:very confident
Coverage over the Query: 96-523
View the alignment between query and template
View the model in PyMOL