Citrus Sinensis ID: 042204

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
FYSGNRALNLPSLERLLVDDCTNMKIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQPGPQPGLPHAGNEGEDALGSNVITNGKVY
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
fysgnralnlpslerllvddctnmkifsrgelstpmlHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLrkrreappsqqflsfapapnlnlQTRLEIFAAMVAGvwsddnnlqLEATTKFRKLLsiersppieeviqsgvvprfVEFLMREDYPQLQYEAAWALTNIasktsedtkvvidhGAVPIFVKLlaspnddiREQAVWALGnvagdsprcrdlvlSEEALIPLLAQLNEHAKLSMLRTATWTLsnfcrgmprpifeqvrpaLPVLAQLVHSNDKEVLTDACWALYFlsngkndkIQAVIEAGVCPRLVELlghrsssvlspalqtighivagddfqtqciincgaLPYLLVLLIHSHKKSIKNHACWTiskitagnREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISnatsggsheQIKYLVREKCikplcdllpcanptIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENlqshenneiHEKSVKILETYWcgrvvgpqpgpqpglphagnegedalgsnvitngkvy
Flexible Loop (DISEMBL)
fysgnralnlpsleRLLVDDCTNMKIFsrgelstpmLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREappsqqflsfapapNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKllsiersppieeviqsgvVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENlqshenneiHEKSVKILETYWCGRVVGPQPGPQPGLPHAgnegedalgsnvitngkvy
Low Complexity Region (SEG)
FYSGNRALNLPSLERLLVDDCTNMKIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCgrvvgpqpgpqpgLPHAGNEGEDALGSNVITNGKVY
Disordered region (IsUnstruct)
**********PSLERLLVDDCTNMKIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLK*****************LSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEA****************IHEKSVKILETYWCGRVV********************************
Disordered Region (DISOPRED)
********NLPSLERLLV******************************************EQVNLKKESFLRKR***************************AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVG*******************************
Disordered Region (DISEMBL)
FYSGNRALNLPSLERLLVDDCTNMKIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQPGPQPGLPHAGNEGEDALGSNVITNGKVY
Disordered Region (DISPRO)
*YSGNRALNLPSLERLLVDDCTNMK******LSTPMLH*****M*DEACWAWKEGLNTTIEQVNLKKESFLRKRREA**************LNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FYSGNRALNLPSLERLLVDDCTNMKIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQPGPQPGLPHAGNEGEDALGSNVITNGKVY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	559	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.805	0.855	0.745	0.0
Q96321	532	Importin subunit alpha-1	no	no	0.851	0.894	0.694	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.813	0.852	0.711	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.815	0.865	0.708	0.0
O04294	531	Importin subunit alpha-2	no	no	0.813	0.856	0.652	1e-171
Q76P29	516	Importin subunit alpha-B	yes	no	0.803	0.870	0.558	1e-141
O35345	536	Importin subunit alpha-7	yes	no	0.744	0.776	0.598	1e-135
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.744	0.776	0.598	1e-135
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.744	0.776	0.596	1e-134
O60684	536	Importin subunit alpha-7	yes	no	0.744	0.776	0.596	1e-134

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/460 (74%), Positives = 391/460 (85%), Gaps = 10/460 (2%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPN---LNLQTRLEIFAAMVAGVWSDDNNLQLEATTK 122
           ++ES L+KRRE   +Q     AP P      +  +LE   AM+ GV+SDDNNLQLEATT+
Sbjct: 41  REESLLKKRREGLQAQ-----APVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQ 95

Query: 123 FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182
           FRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQ+EAAWALTNIAS TSE+TKVVI
Sbjct: 96  FRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI 155

Query: 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL 242
           DHGAVPIFVKLL S +DD+REQAVWALGNVAGDSP+CRDLVL+  AL+PLLAQLNEH KL
Sbjct: 156 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL 215

Query: 243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302
           SMLR ATWTLSNFCRG P+P FEQ RPALP LA+L+HSND+EVLTDACWAL +LS+G ND
Sbjct: 216 SMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND 275

Query: 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362
           KIQAVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQCII+  ALP LL LL
Sbjct: 276 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 335

Query: 363 IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
             + KKSIK  ACWTIS ITAGN++QIQAVI+AG+IGPL+NLLQ AE +IK  AAWAISN
Sbjct: 336 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN 395

Query: 423 ATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD 482
           ATSGGSH+QIKYLV E CIKPLCDLL C +  IVTVCL+GLENILKVGE +K +  A GD
Sbjct: 396 ATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTL--AAGD 453

Query: 483 VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           VN ++Q+++EAEGLEKIENLQSH+NNEI+EK+VKILE YW
Sbjct: 454 VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/485 (69%), Positives = 393/485 (81%), Gaps = 9/485 (1%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
           ++ES ++KRRE    Q    F  A   ++  +L+    MVAGVWSDD  LQLE+TT+FRK
Sbjct: 41  REESLMKKRREG--MQALQGFPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRK 98

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           LLSIERSPPIEEVI +GVVPRFVEFL +EDYP +Q+EAAWALTNIAS TS+ TKVVIDH 
Sbjct: 99  LLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHN 158

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AVPIFV+LLASP+DD+REQAVWALGNVAGDSPRCRDLVL   AL+PLL QLNEHAKLSML
Sbjct: 159 AVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSML 218

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           R ATWTLSNFCRG P+P F+QV+PALP L +L+HS+D+EVLTDACWAL +LS+G NDKIQ
Sbjct: 219 RNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQ 278

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
            VI+AGV P+LVELL H S SVL PAL+T+G+IV GDD QTQC+IN GALP L  LL  +
Sbjct: 279 TVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQN 338

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           HKKSIK  ACWTIS ITAGN++QIQ V++A LI PL++LLQNAE +IK  AAWAISNATS
Sbjct: 339 HKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATS 398

Query: 426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
           GGSH+QIKYLV + CIKPLCDLL C +P I+TVCL+GLENILKVGEAEKN+    GD+N 
Sbjct: 399 GGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNY 457

Query: 486 YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGP--QP----GPQPGLPH 539
           YAQL+++AEGLEKIENLQSH+NNEI+EK+VKILETYW         QP    G Q G   
Sbjct: 458 YAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQF 517

Query: 540 AGNEG 544
            GN+ 
Sbjct: 518 GGNQA 522

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/461 (71%), Positives = 388/461 (84%), Gaps = 6/461 (1%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLN----LQTRLEIFAAMVAGVWSDDNNLQLEATT 121
           ++ES L+KRR+  P+    + A +P L     LQ +LE   AMV  V SDD+ +QLEATT
Sbjct: 41  REESLLKKRRDGLPAAAAAAAAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATT 100

Query: 122 KFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181
           +FRKLLSIERSPPIEEVI +GVVPRF+ FL REDYPQLQ+EAAWALTNIAS TS++TKVV
Sbjct: 101 QFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVV 160

Query: 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAK 241
           ++ GAVPIFVKLL+SP++D+REQAVWALGNVAGDSP+CRDLVL+   L PLL QLNEHAK
Sbjct: 161 VESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAK 220

Query: 242 LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN 301
           LSMLR ATWTLSNFCRG P+P FEQV+PAL  L +L+HS D+EVLTDACWAL +LS+G N
Sbjct: 221 LSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTN 280

Query: 302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL 361
           DKIQAVIE+GV PRLVELL H S+SVL PAL+T+G+IV GDD QTQC+I+  ALP LL L
Sbjct: 281 DKIQAVIESGVFPRLVELLMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNL 340

Query: 362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS 421
           L ++HKKSIK  ACWTIS ITAGNREQIQAVI+A +I PL++LLQ AE +IK  AAWAIS
Sbjct: 341 LTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAIS 400

Query: 422 NATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIG 481
           NATSGG+H+QIKYLV + CIKPLCDLL C +P IVTVCL+GLENILKVGEAEKN+    G
Sbjct: 401 NATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL--GAG 458

Query: 482 DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           DVN YAQ++++AEGLEKIENLQSH+N EI+EK+VK+LE+YW
Sbjct: 459 DVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYW 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/460 (70%), Positives = 387/460 (84%), Gaps = 4/460 (0%)

Query: 64  NLKKESFLRKRREAP-PSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTK 122
           N ++E+ L+KRRE    +QQF S A   +L+   +LE    ++AGVWSDD++LQLE TT+
Sbjct: 39  NKREENLLKKRREGLLQAQQFPSTAAVSHLD--KKLETLPELIAGVWSDDSSLQLECTTQ 96

Query: 123 FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182
           FRKLLSIER+PPIEEVIQSGVVPRFVEFL R+DYPQLQ+EAAWALTNIAS TSE+TKVVI
Sbjct: 97  FRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVI 156

Query: 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL 242
           D+G+VPIF++LL+SP+DD+REQAVWALGN+AGDSP+ RDLVL   AL+ LLAQ NE AKL
Sbjct: 157 DYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKL 216

Query: 243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302
           SMLR ATWTLSNFCRG P+P+FEQ + ALP L +L+HSND+EVLTDACWAL +LS+G ND
Sbjct: 217 SMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTND 276

Query: 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362
           KIQAVIEAGVC RLVELL H S SVL PAL+T+G+IV GDD QTQ +I+  ALP L+ LL
Sbjct: 277 KIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLL 336

Query: 363 IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
             ++KKSIK  ACWTIS ITAGNR QIQ VI+AG+I PL+ LLQNAE  IK  AAWAISN
Sbjct: 337 TQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISN 396

Query: 423 ATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD 482
           ATSGG+H+QIK+LV + CIKPLCDLL C +P IVTVCL+GLENILK+GEA+K++    G 
Sbjct: 397 ATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEG- 455

Query: 483 VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           VN YAQL++EAEGLEKIENLQSH+N EI+EK+VKILETYW
Sbjct: 456 VNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 495

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  603 bits (1554), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 300/460 (65%), Positives = 371/460 (80%), Gaps = 5/460 (1%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEI---FAAMVAGVWSDDNNLQLEATTK 122
           K+E  L+K+R    S  F S       +L +  ++     AMVAG+WS+D+N QLEAT  
Sbjct: 40  KREENLQKKR-FTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNL 98

Query: 123 FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182
            RKLLSIE++PPI EV+QSGVVPR V+FL R+D+P+LQ+EAAWALTNIAS TSE+T V+I
Sbjct: 99  LRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVII 158

Query: 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL 242
           + GAVPIF++LL+S ++D+REQAVWALGNVAGDSP+CRDLVLS  A+ PLL+Q NE+ KL
Sbjct: 159 ESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKL 218

Query: 243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302
           SMLR ATWTLSNFCRG P P FEQ +PALPVL +LV S D+EVLTDACWAL +LS+  ND
Sbjct: 219 SMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSND 278

Query: 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362
           KIQAVIEAGV PRL++LLGH S SVL PAL+TIG+IV GDD QTQ +++  ALP LL LL
Sbjct: 279 KIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLL 338

Query: 363 IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
            +++KKSIK  ACWTIS ITAGN +QIQAVIDAG+I  L+ +LQ+AE  +K  AAW ISN
Sbjct: 339 KNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISN 398

Query: 423 ATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD 482
           ATSGG+H+QIK++V + CIKPLCDLL C +  +VTVCL+ LENIL VGEAEKN+    G+
Sbjct: 399 ATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHT-GE 457

Query: 483 VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
            N YAQ+++EAEGLEKIENLQSH+NN+I++K+VKILET+W
Sbjct: 458 DNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  502 bits (1292), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/460 (55%), Positives = 341/460 (74%), Gaps = 11/460 (2%)

Query: 64  NLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKF 123
           N ++ES L+KR +A P    +      N     RLE   ++VA + S++ +L L++TT F
Sbjct: 36  NKREESLLKKRTQAVPGSTPVKVDSLIN----QRLEQLPSLVAEINSENPDLILKSTTAF 91

Query: 124 RKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVID 183
           RKLLSIE+SPPIEEVI++G+VPR V+FL  +D+PQLQ+EAAWALTNIAS T E T+VVI+
Sbjct: 92  RKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIE 151

Query: 184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA--K 241
           +GA+ +FV LL+SP+DD+REQAVWALGN+AGDS  CRDLVLS  AL PLL+ L   A  K
Sbjct: 152 NGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIK 211

Query: 242 LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN 301
           +SM+R ATWTLSNFCRG P+P FE VR +LPVLA+L++  D+EVL DACWAL +LS+G N
Sbjct: 212 VSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYYQDEEVLIDACWALSYLSDGSN 271

Query: 302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL 361
           ++IQ VI+A VC ++VELLGH + +V +PAL+TIG+IV GDD QTQ +++  AL +LL L
Sbjct: 272 ERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNIVTGDDNQTQIVLSVQALSHLLNL 331

Query: 362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS 421
           L  S K++I+  ACWTIS ITAG++ QIQ VIDA +I  L+ LL NAE  I+  AAWAIS
Sbjct: 332 L-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSLVYLLANAEFEIQKEAAWAIS 390

Query: 422 NATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIG 481
           NATS G+ +QI +LV + C+KPLCDLL  ++P I+ V L+G+ENIL  G+ E      + 
Sbjct: 391 NATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKE----AQVT 446

Query: 482 DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521
            VN Y +++E+A+GL KI +LQ H N +  EK  +I+ TY
Sbjct: 447 GVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTY 486

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  483 bits (1243), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/421 (59%), Positives = 309/421 (73%), Gaps = 5/421 (1%)

Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQYE 162
           MV  ++SDD++LQL  T KFRKLLS E SPPI+EVI + GVV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           AAWALTNIAS TS+ TK+VI+ GAVPIF++LL S  +D++EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDY 204

Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN 281
           VL+   L PLL  L +  +L+M R A W LSN CRG  P P F +V P LPVL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341
           D ++L DACWAL +LS+G N+KIQAVI++GVC RLVELL H    V SPAL+ +G+IV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPL 401
           DD QTQ I+NC ALP LL LL  S K+SI+  ACWTIS ITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 402 INLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLK 461
           I +LQ AE   +  AAWAI+NATSGG+ EQI+YLV   CIKPLCDLL   +  IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 462 GLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521
           GLENIL++GE E     +   VN Y  L+EEA GL+KIE LQSHEN EI++K+  ++E Y
Sbjct: 444 GLENILRLGEQESKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 522 W 522
           +
Sbjct: 502 F 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  481 bits (1239), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/421 (59%), Positives = 309/421 (73%), Gaps = 5/421 (1%)

Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQYE 162
           MV  ++SDD +LQL  T KFRKLLS E SPPI+EVI + GVV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           AAWALTNIAS TS+ TK+VI+ GAVPIF++LL S  +D++EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN 281
           VL+   L PLL  L +  +L+M R A W LSN CRG  P P F +V P LPVL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341
           D ++L DACWAL +LS+G N+KIQAVI++GVC RLVELL H  + V SPAL+ +G+IV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPL 401
           DD QTQ I+NC ALP LL LL  S K+SI+  ACWTIS ITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 402 INLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLK 461
           I +LQ AE   +  AAWAI+NATSGG+ EQI+YLV   CIKPLCDLL   +  IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 462 GLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521
           GLENIL++GE E     +   VN Y  L+EEA GL+KIE LQSHEN EI++K+  ++E Y
Sbjct: 444 GLENILRLGEQEGKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 522 W 522
           +
Sbjct: 502 F 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/421 (59%), Positives = 308/421 (73%), Gaps = 5/421 (1%)

Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQYE 162
           MV  ++SDD++LQL  T KFRKLLS E SPPI+EVI +  VV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           AAWALTNIAS TS+ TK+VI+ GAVPIF++LL S  +D++EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN 281
           VL+   L PLL  L +  +L+M R A W LSN CRG  P P F +V P LPVL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341
           D ++L DACWAL +LS+G N+KIQAVI++GVC RLVELL H    V SPAL+ +G+IV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPL 401
           DD QTQ I+NC ALP LL LL  S K+SI+  ACWTIS ITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 402 INLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLK 461
           I +LQ AE   +  AAWAI+NATSGG+ EQI+YLV   CIKPLCDLL   +  IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 462 GLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521
           GLENIL++GE E     +   VN Y  L+EEA GL+KIE LQSHEN EI++K+  ++E Y
Sbjct: 444 GLENILRLGEQEGKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 522 W 522
           +
Sbjct: 502 F 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/421 (59%), Positives = 308/421 (73%), Gaps = 5/421 (1%)

Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQYE 162
           MV  ++SDD++LQL  T KFRKLLS E SPPI+EVI +  VV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           AAWALTNIAS TS+ TK+VI+ GAVPIF++LL S  +D++EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN 281
           VL+   L PLL  L +  +L+M R A W LSN CRG  P P F +V P LPVL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341
           D ++L DACWAL +LS+G N+KIQAVI++GVC RLVELL H    V SPAL+ +G+IV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPL 401
           DD QTQ I+NC ALP LL LL  S K+SI+  ACWTIS ITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 402 INLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLK 461
           I +LQ AE   +  AAWAI+NATSGG+ EQI+YLV   CIKPLCDLL   +  IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 462 GLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521
           GLENIL++GE E     +   VN Y  L+EEA GL+KIE LQSHEN EI++K+  ++E Y
Sbjct: 444 GLENILRLGEQEGKRSGS--GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 522 W 522
           +
Sbjct: 502 F 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
224130302	529	predicted protein [Populus trichocarpa]	0.817	0.863	0.773	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.851	0.898	0.748	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.849	0.897	0.744	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.853	0.898	0.744	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.851	0.898	0.742	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.851	0.896	0.744	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.849	0.897	0.735	0.0
119866037	529	Impa2 [Nicotiana benthamiana]	0.812	0.858	0.768	0.0
13752562	529	importin alpha 2 [Capsicum annuum]	0.812	0.858	0.763	0.0
255542844	531	importin alpha, putative [Ricinus commun	0.847	0.892	0.718	0.0

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/459 (77%), Positives = 406/459 (88%), Gaps = 2/459 (0%)

Query: 64  NLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKF 123
           N ++ES  +KRRE   +QQF + A   + N++ +LE   +MV+GVWSDD+NLQLEATT+F
Sbjct: 39  NKREESLQKKRREGLLAQQFPA-AVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQF 97

Query: 124 RKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVID 183
           RKLLSIERSPPIEEVIQ+GVVPRFVE L+RED+PQLQ+EAAWALTNIAS TSE+TKVVID
Sbjct: 98  RKLLSIERSPPIEEVIQAGVVPRFVELLVREDFPQLQFEAAWALTNIASGTSENTKVVID 157

Query: 184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLS 243
           HGAVPIFVKLL SP+DD+REQAVWALGNVAGDSP+CRDLVLS  ALIPLLAQLNEHAKLS
Sbjct: 158 HGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLS 217

Query: 244 MLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK 303
           MLR ATWTLSNFCRG P+P+FE+VRPALP L +LVHS D+EVLTDACWAL +LS+G NDK
Sbjct: 218 MLRNATWTLSNFCRGKPQPLFEKVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDK 277

Query: 304 IQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI 363
           IQAVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQCIIN GALP LL LL 
Sbjct: 278 IQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLT 337

Query: 364 HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423
           H+HKKSIK  ACWTIS ITAGN+EQIQAVI+AGLIGPL+NLLQNAE +IK  AAWA+SNA
Sbjct: 338 HNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWAVSNA 397

Query: 424 TSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDV 483
           TSGG+HEQIK+LV + CIKPLCDLL C +P IVTVCL+GLENILKVGEAEKN+  + GDV
Sbjct: 398 TSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNS-GDV 456

Query: 484 NQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           N YAQ++++AEGLEKIENLQSH+NNEI+EK+VKILETYW
Sbjct: 457 NFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/481 (74%), Positives = 408/481 (84%), Gaps = 5/481 (1%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
           ++ES L+KRRE   +QQ    AP  N  +  +LE   AMVAGVWSDDN++QLEATT+FRK
Sbjct: 41  REESLLKKRREGLQAQQQFP-APLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRK 99

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           LLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQ+EAAWALTNIAS TSE+TKVVIDHG
Sbjct: 100 LLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 159

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AVPIFVKLL+SP+DD+REQAVWALGNVAGDSPRCRDLVLS+ AL+PLLAQLNEHAKLSML
Sbjct: 160 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSML 219

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           R ATWTLSNFCRG P+P FEQVRPALP L +LV SND+EVLTDACWAL +LS+G NDKIQ
Sbjct: 220 RNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQ 279

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
           AVIEAGVC RLV+LL H S SVL PAL+T+G+IV GDD QTQCIIN GALP LL LL ++
Sbjct: 280 AVIEAGVCARLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNN 339

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           HKKSIK  ACWTIS ITAGN+EQIQ VI+AGL+ PL+NLLQNAE +IK  AAWAISNATS
Sbjct: 340 HKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATS 399

Query: 426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
           GG HEQIKYLV + CIKPLCDLL C +P IVTVCL+GLENILKVGEAEK++    GDVN+
Sbjct: 400 GGIHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNE 458

Query: 486 YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQP---GPQPGLPHAGN 542
           YAQ++++AEGLEKIENLQSH+NNEI+EK+VKILETYW        P   G QPG     N
Sbjct: 459 YAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNFGNN 518

Query: 543 E 543
           E
Sbjct: 519 E 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/481 (74%), Positives = 408/481 (84%), Gaps = 6/481 (1%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
           ++ES  +KRRE   +QQF + A A  +  + +LE   +MVAGVWSD+++LQLEATT+FRK
Sbjct: 41  REESLQKKRREGLQAQQFPAAAHASTV--EKKLESLPSMVAGVWSDNSSLQLEATTQFRK 98

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           LLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQ+EAAWALTNIAS TSE+TKVVIDHG
Sbjct: 99  LLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 158

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AVPIFVKLL SP+DD+REQAVWALGNVAGDSPRCRDLVL   ALIPLLAQLNEHAKLSML
Sbjct: 159 AVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSML 218

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           R ATWTLSNFCRG P+P F+QV+PALP L +LVHS+D+EVLTDACWAL +LS+G NDKIQ
Sbjct: 219 RNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQ 278

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
           AVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQ IIN GALP LL LL H+
Sbjct: 279 AVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHN 338

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           HKKSIK  ACWTIS ITAGN+EQIQAVI+AG+I PL++LLQ AE +IK  AAWAISNATS
Sbjct: 339 HKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATS 398

Query: 426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
           GG+HEQIKYLV + CIKPLCDLL C +P IVTVCL+GLENILKVGEAEK +  + GDVN 
Sbjct: 399 GGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNS-GDVNY 457

Query: 486 YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQP---GPQPGLPHAGN 542
           YAQL+++AEGLEKIENLQSH+NNEI+EK+VKILETYW        P   G QPG    GN
Sbjct: 458 YAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGSQPGFQFGGN 517

Query: 543 E 543
           +
Sbjct: 518 D 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/481 (74%), Positives = 404/481 (83%), Gaps = 4/481 (0%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
           ++ES  +KRRE   +QQ        +  ++ +LE   AMVAGVWSDDN+ QLEATT+FRK
Sbjct: 41  REESLQKKRREGLQAQQQFPTPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRK 100

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           LLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQ+EAAWALTNIAS TSE+TKVVIDHG
Sbjct: 101 LLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AVPIFVKLL+SP+DD+REQAVWALGNVAGDSPRCRDLVLS  ALIPLLAQLNEHAKLSML
Sbjct: 161 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSML 220

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           R ATWTLSNFCRG P+P FEQVR ALP L +LV SND+EVLTDACWAL +LS+G NDKIQ
Sbjct: 221 RNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQ 280

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
           AVIEAGVCPRLV+LL H S SVL PAL+T+G+IV GDD QTQ IIN GALP LL LL H+
Sbjct: 281 AVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHN 340

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           HKKSIK  ACWTIS ITAGNR+QIQAVI+AGLI PL+NLLQNAE +IK  AAWAISNATS
Sbjct: 341 HKKSIKKEACWTISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATS 400

Query: 426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
           GG+HEQIKYLV + CIKPLCDLL C +P IVTVCL+GLENILKVGEAEK++    GDVN 
Sbjct: 401 GGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNL 459

Query: 486 YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC---GRVVGPQPGPQPGLPHAGN 542
           YAQ+++EAEGLEKIENLQSH+NNEI+EK+VKILETYW       +    G QPG     N
Sbjct: 460 YAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDETLPAGDGAQPGFNFGNN 519

Query: 543 E 543
           +
Sbjct: 520 D 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/481 (74%), Positives = 406/481 (84%), Gaps = 5/481 (1%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
           ++ES L+KRRE   + Q L  AP  N  +   LE   AMVAGVWS+DN+LQLEATT+FRK
Sbjct: 41  REESLLKKRREGLQAHQQLP-APLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRK 99

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           LLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQ+EAAWALTNIAS TSE+TKVVIDHG
Sbjct: 100 LLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 159

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AVPIFVKLL+SP+DD+REQAVWALGNVAGDSPRCRDLVLS  AL+PLLAQLNEHAKLSML
Sbjct: 160 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSML 219

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           R ATWTLSNFCRG P+P FEQVRPALP L +LV SND+EVLTDACWAL +LS+G NDKIQ
Sbjct: 220 RNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQ 279

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
           AVIEAGVCPRL++LL H S SVL PAL+T+G+IV GDD QTQCIIN GALP LL LL ++
Sbjct: 280 AVIEAGVCPRLMQLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNN 339

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           HKKSIK  ACWTIS ITAGN+EQIQ VI+AGL+ PL+NLLQ+AE +IK  A+WAISNATS
Sbjct: 340 HKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATS 399

Query: 426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
           GG+H+QIKYLV + C+KPLCDLL C +P IVTVCL+GLENILKVGEAEK++    GDVN 
Sbjct: 400 GGTHDQIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNV 458

Query: 486 YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQP---GPQPGLPHAGN 542
           YAQ+++EAEGLEKIENLQSH+NNEI+EK VKILETYW        P   G QPG     N
Sbjct: 459 YAQMIDEAEGLEKIENLQSHDNNEIYEKVVKILETYWLEEEDETLPSGNGAQPGFNFGNN 518

Query: 543 E 543
           E
Sbjct: 519 E 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/482 (74%), Positives = 408/482 (84%), Gaps = 6/482 (1%)

Query: 66  KKESFLRKRREA-PPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFR 124
           ++ES  +KRRE     QQF +   A ++ ++ +LE   AMVAGVWSDDN+ QLEATT+FR
Sbjct: 41  REESLQKKRREGLQAQQQFPTPLQAASI-VEKKLESLPAMVAGVWSDDNSQQLEATTQFR 99

Query: 125 KLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDH 184
           KLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQ+EAAWALTNIAS TSE+TKVVIDH
Sbjct: 100 KLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDH 159

Query: 185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSM 244
           GAVPIFVKLL+SP+DD+REQAVWALGNVAGDSP+CRDLVLS  ALIPLLAQLNEHAKLSM
Sbjct: 160 GAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSM 219

Query: 245 LRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKI 304
           LR ATWTLSNFCRG P+P FEQVR ALP L +LV SND+EVLTDACWAL +LS+G NDKI
Sbjct: 220 LRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKI 279

Query: 305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364
           QAVIEAGVCPRLV+LL H S SVL PAL+T+G+IV GDD QTQ IIN GALP LL LL H
Sbjct: 280 QAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTH 339

Query: 365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424
           +HKKSIK  ACWTIS ITAGNR+QIQAV++AGLI PL+NLLQNAE +IK  AAWAISNAT
Sbjct: 340 NHKKSIKKEACWTISNITAGNRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNAT 399

Query: 425 SGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVN 484
           SGG+HEQIKYLV + CIKPLCDLL C +P IVTVCL+GLENILKVGEAEK+M  + GDVN
Sbjct: 400 SGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGNS-GDVN 458

Query: 485 QYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC---GRVVGPQPGPQPGLPHAG 541
            YAQ+++EAEGLEKIENLQSH+NNEI+EK+VKILETYW       +    G QPG     
Sbjct: 459 LYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDETLPTGDGAQPGFNFGN 518

Query: 542 NE 543
           N+
Sbjct: 519 ND 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/484 (73%), Positives = 407/484 (84%), Gaps = 9/484 (1%)

Query: 64  NLKKESFLRKRREAPPSQQFLSFAPA--PNLNLQTRLEIFAAMVAGVWSDDNNLQLEATT 121
           N ++ES L+KRRE   +QQF    PA   + N++ +LE   +MVAGVWS+D NLQLE+TT
Sbjct: 39  NKREESLLKKRREGLQAQQF---PPAILSSSNVEKKLENLPSMVAGVWSEDGNLQLESTT 95

Query: 122 KFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV 181
           +FRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQ+EAAWALTNIAS TSE+TKVV
Sbjct: 96  QFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVV 155

Query: 182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAK 241
           IDHGAVPIFVKLL SP+DD+REQAVWALGNVAGDSP+CRDLVLS  ALIPLLAQLNEHAK
Sbjct: 156 IDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAK 215

Query: 242 LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN 301
           LSMLR ATWTLSNFCRG P+P FEQVRPALP L +LVHS D+EVLTD+CWAL +LS+G +
Sbjct: 216 LSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDEEVLTDSCWALSYLSDGTD 275

Query: 302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL 361
           DKIQAVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQCII  GALP LL L
Sbjct: 276 DKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIITTGALPCLLSL 335

Query: 362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS 421
           L H+HKKSIK  ACWTIS ITAGN+EQIQAVI+ GLIGPL+NLLQNAE +IK  AAWA+S
Sbjct: 336 LTHNHKKSIKKEACWTISNITAGNKEQIQAVIENGLIGPLVNLLQNAEFDIKKEAAWAVS 395

Query: 422 NATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIG 481
           NATSGG+HEQIK+LV + CIKPLCDLL   +P IVTV L+GLENILKVGEAEKN+  + G
Sbjct: 396 NATSGGTHEQIKFLVSQGCIKPLCDLLVSPDPRIVTVSLEGLENILKVGEAEKNLGNS-G 454

Query: 482 DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC---GRVVGPQPGPQPGLP 538
           D N YAQ++++AEGLEKIENLQSH+NNEI+EK+VKILETYW       +    G Q G  
Sbjct: 455 DANFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETLPSGDGAQQGFQ 514

Query: 539 HAGN 542
             GN
Sbjct: 515 FGGN 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119866037|gb|ABM05488.1| Impa2 [Nicotiana benthamiana]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/457 (76%), Positives = 391/457 (85%), Gaps = 3/457 (0%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
           ++ES L+KRRE    QQ    A      ++ +LE   +MVAGVWS+DNNLQLEATT+FRK
Sbjct: 41  REESLLKKRREGLQPQQQPFPANLHTSTVEKKLESLPSMVAGVWSNDNNLQLEATTQFRK 100

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           LLSIERSPPIEEVIQSGVVPRFVEFLMRED+PQLQ+EAAWALTNIAS TS++T+VVIDHG
Sbjct: 101 LLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSDNTRVVIDHG 160

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AVPIFVKLL SP+DD+REQAVWALGNVAGDSPRCRDLVLS  ALIPLLAQLNEH KLSML
Sbjct: 161 AVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHTKLSML 220

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           R ATWTLSNFCRG P+P FEQVRPAL  L +LVHSND+EVLTDACWAL +LS+G NDKIQ
Sbjct: 221 RNATWTLSNFCRGKPQPPFEQVRPALSALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
           AVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQCII  GAL  LL LL H+
Sbjct: 281 AVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDLQTQCIIEHGALTCLLSLLTHN 340

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           HKKSIK  ACWTIS ITAGN+EQIQAVI+AGLI PL+NLLQ AE +IK  AAWAISNATS
Sbjct: 341 HKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATS 400

Query: 426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
           GG+HEQIK+LV + CIKPLCDLL C +P IVTVCL+GLENILKVGEAEK      G +N 
Sbjct: 401 GGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK---ANTGGINY 457

Query: 486 YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           YAQL ++AEGLEKIENLQSH+NNEI+EK+VKILETYW
Sbjct: 458 YAQLTDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13752562|gb|AAK38727.1|AF369707_1 importin alpha 2 [Capsicum annuum]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/457 (76%), Positives = 390/457 (85%), Gaps = 3/457 (0%)

Query: 66  KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
           ++ES L+KRRE   +QQ    +      ++ +L    +MVAGVWS DNNLQLEA T+FRK
Sbjct: 41  REESLLKKRREGLQAQQQQFPSNLQTSTVEKKLASLPSMVAGVWSTDNNLQLEANTQFRK 100

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           LLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQ+EAAWALTNIAS TSE+T+VVIDHG
Sbjct: 101 LLSIERSPPIEEVIQSGVVPRFVEFLLREDFPQLQFEAAWALTNIASGTSENTRVVIDHG 160

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AVPIFVKLL SP+DD+REQAVWALGNVAGDSPRCRDLVLS  ALIPLLAQLNEHAKLSML
Sbjct: 161 AVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHAKLSML 220

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           R ATWTLSNFCRG P+P FEQVRPAL  L +LVHS D+EVLTDACWAL +LS+G NDKIQ
Sbjct: 221 RNATWTLSNFCRGKPQPPFEQVRPALSALQRLVHSTDEEVLTDACWALSYLSDGTNDKIQ 280

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
           AVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQCII  GALP LL LL H+
Sbjct: 281 AVIEAGVCPRLVELLVHPSPSVLIPALRTVGNIVTGDDLQTQCIIEHGALPCLLSLLTHN 340

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           HKKSIK  ACWTIS ITAGN+EQIQAVI AGLI PL+NLLQ+AE +IK  AAWAISNATS
Sbjct: 341 HKKSIKKEACWTISNITAGNKEQIQAVIAAGLISPLVNLLQSAEFDIKKEAAWAISNATS 400

Query: 426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
           GG+HEQIK+LV + CIKPLCDLL C +P IVTVCL+GLENILKVGEAEK      G +N 
Sbjct: 401 GGTHEQIKFLVSQNCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK---ANTGGINY 457

Query: 486 YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           YAQL ++AEGLEKIENLQSH+NNEI+EK+VKILETYW
Sbjct: 458 YAQLTDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/487 (71%), Positives = 407/487 (83%), Gaps = 13/487 (2%)

Query: 64  NLKKESFLRKRREAPPSQQFLSFAPAP----NLNLQTRLEIFAAMVAGVWSDDNNLQLEA 119
           N ++ES  +KRRE   +Q      P P    +  ++ +LE   +MVAGVWSDD+NLQLEA
Sbjct: 39  NRREESLQKKRREGLQAQ------PMPASLHSSAVEKKLEHLPSMVAGVWSDDSNLQLEA 92

Query: 120 TTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179
           TT+FRKLLSIERSPPIEEVIQ+GVVPRFVEFLMRED+PQLQ+EAAWALTNIAS TSE+T+
Sbjct: 93  TTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTR 152

Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH 239
           VVIDHGAVPIFVKLLASP+DD+REQAVWALGNVAGDSP+CRDLVL   AL+PLLAQLNEH
Sbjct: 153 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLVLGNGALLPLLAQLNEH 212

Query: 240 AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG 299
           AKLSMLR ATWTLSNFCRG P+P FEQV+PALP LA+L+HSND+EVLTDACWAL +LS+G
Sbjct: 213 AKLSMLRNATWTLSNFCRGKPQPFFEQVKPALPALARLIHSNDEEVLTDACWALSYLSDG 272

Query: 300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLL 359
            NDKIQAVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQCIIN  ALP LL
Sbjct: 273 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 332

Query: 360 VLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWA 419
            LL +++KKSIK  ACWTIS ITAGN+EQIQAVI+A +IGPL++LL+NAE +IK  AAWA
Sbjct: 333 NLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEANIIGPLVHLLENAEFDIKKEAAWA 392

Query: 420 ISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTA 479
           ISNATSGG+H+QIKYLV + CIKPLCDLL C +P IVTVCL+GLENILKVGEA+KN+   
Sbjct: 393 ISNATSGGTHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNLGNN 452

Query: 480 IGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC---GRVVGPQPGPQPG 536
            G VN YAQ++++AEGLEKIENLQSH+N EI+EK+VKILETYW       + P    Q G
Sbjct: 453 DGGVNLYAQMIDDAEGLEKIENLQSHDNIEIYEKAVKILETYWLEEEDETMPPGDASQSG 512

Query: 537 LPHAGNE 543
               G++
Sbjct: 513 FQFGGSD 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.815	0.852	0.739	3.9e-179
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.812	0.853	0.722	2.8e-176
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.819	0.851	0.693	1.4e-167
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.810	0.840	0.653	2.6e-157
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.813	0.856	0.652	1.1e-156
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.797	0.859	0.615	2.1e-141
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.794	0.840	0.588	1.4e-133
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.763	0.772	0.598	8.1e-131
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.824	0.836	0.572	2.5e-129
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.821	0.889	0.549	1.7e-128

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1739 (617.2 bits), Expect = 3.9e-179, P = 3.9e-179
 Identities = 340/460 (73%), Positives = 393/460 (85%)

Query:    66 KKESFLRKRREAPPSQQFLSFAPAP---NLNLQTRLEIFAAMVAGVWSDDNNLQLEATTK 122
             ++ES  +KRRE   + Q   FAP+P   +  ++ +LE   AMV GVWSDD +LQLEATT+
Sbjct:    41 REESLQKKRREGLQANQLPQFAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQ 100

Query:   123 FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182
             FRKLLSIERSPPIEEVI +GVVPRFVEFL REDYPQLQ+EAAWALTNIAS TSE+TKVVI
Sbjct:   101 FRKLLSIERSPPIEEVIDAGVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVI 160

Query:   183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL 242
             +HGAVPIFV+LLAS +DD+REQAVWALGNVAGDSPRCRDLVL + ALIPLL+QLNEHAKL
Sbjct:   161 EHGAVPIFVQLLASQSDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKL 220

Query:   243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302
             SMLR ATWTLSNFCRG P+P F+QVRPALP L +L+HS D+EVLTDACWAL +LS+G ND
Sbjct:   221 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTND 280

Query:   303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362
             KIQ+VIEAGV PRLVELL H+S SVL PAL++IG+IV GDD QTQC+I+ GAL  LL LL
Sbjct:   281 KIQSVIEAGVVPRLVELLQHQSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLL 340

Query:   363 IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
              H+HKKSIK  ACWTIS ITAGNR+QIQAV +AGLI PL+NLLQNAE +IK  AAWAISN
Sbjct:   341 THNHKKSIKKEACWTISNITAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISN 400

Query:   423 ATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD 482
             ATSGGS +QIKY+V +  +KPLCDLL C +P I+TVCL+GLENILKVGEAEK      GD
Sbjct:   401 ATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNT-GD 459

Query:   483 VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
             VN YAQL+++AEGLEKIENLQSH+N+EI+EK+VKILETYW
Sbjct:   460 VNFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILETYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1712 (607.7 bits), Expect = 2.8e-176, P = 2.8e-176
 Identities = 330/457 (72%), Positives = 386/457 (84%)

Query:    66 KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
             ++ES ++KRRE   + Q   F  A   ++  +L+    MVAGVWSDD  LQLE+TT+FRK
Sbjct:    41 REESLMKKRREGMQALQ--GFPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRK 98

Query:   126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
             LLSIERSPPIEEVI +GVVPRFVEFL +EDYP +Q+EAAWALTNIAS TS+ TKVVIDH 
Sbjct:    99 LLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHN 158

Query:   186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
             AVPIFV+LLASP+DD+REQAVWALGNVAGDSPRCRDLVL   AL+PLL QLNEHAKLSML
Sbjct:   159 AVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSML 218

Query:   246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
             R ATWTLSNFCRG P+P F+QV+PALP L +L+HS+D+EVLTDACWAL +LS+G NDKIQ
Sbjct:   219 RNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQ 278

Query:   306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
              VI+AGV P+LVELL H S SVL PAL+T+G+IV GDD QTQC+IN GALP L  LL  +
Sbjct:   279 TVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQN 338

Query:   366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
             HKKSIK  ACWTIS ITAGN++QIQ V++A LI PL++LLQNAE +IK  AAWAISNATS
Sbjct:   339 HKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATS 398

Query:   426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ 485
             GGSH+QIKYLV + CIKPLCDLL C +P I+TVCL+GLENILKVGEAEKN+    GD+N 
Sbjct:   399 GGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNY 457

Query:   486 YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
             YAQL+++AEGLEKIENLQSH+NNEI+EK+VKILETYW
Sbjct:   458 YAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1630 (578.8 bits), Expect = 1.4e-167, P = 1.4e-167
 Identities = 322/464 (69%), Positives = 381/464 (82%)

Query:    64 NLKKESFLRKRREAPPSQQFLSFA-----PAPNLNLQTRLEIFAAMVAGVWSDDNNLQLE 118
             N +++S L+KRRE    QQ L        P     ++ RLE    MV GV+SDD   QLE
Sbjct:    39 NKREDSLLKKRREGMMLQQQLPLGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLE 98

Query:   119 ATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178
             ATT+FRKLLSIERSPPI+EVI++GV+PRFVEFL R D+PQLQ+EAAWALTN+AS TS+ T
Sbjct:    99 ATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHT 158

Query:   179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE 238
             +VVI+ GAVPIFVKLL S +DD+REQAVWALGNVAGDSP CR+LVL+  AL PLLAQLNE
Sbjct:   159 RVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNE 218

Query:   239 HAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298
             ++KLSMLR ATWTLSNFCRG P   FEQV+PALP+L QL++ ND+EVLTDACWAL +LS+
Sbjct:   219 NSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSD 278

Query:   299 GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYL 358
             G NDKIQAVIEAGVCPRLVELLGH+S +VL PAL+T+G+IV GDD QTQ II  G LP+L
Sbjct:   279 GPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHL 338

Query:   359 LVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW 418
               LL  +HKKSIK  ACWTIS ITAGN+ QI+AV+ AG+I PL++LLQNAE +IK  AAW
Sbjct:   339 YNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAW 398

Query:   419 AISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDT 478
             AISNATSGGSHEQI+YLV + CIKPLCDLL C +P IVTVCL+GLENILKVGEA+K M  
Sbjct:   399 AISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGL 458

Query:   479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
               G VN YAQ++EE++GL+K+ENLQSH+NNEI+EK+VKILE YW
Sbjct:   459 NSG-VNLYAQIIEESDGLDKVENLQSHDNNEIYEKAVKILERYW 501

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1533 (544.7 bits), Expect = 2.6e-157, P = 2.6e-157
 Identities = 305/467 (65%), Positives = 372/467 (79%)

Query:    64 NLKKESFLRKRREA--P-----PSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQ 116
             N ++E+  +KRRE   P     P Q F S  P      +TRLE    M+AGV S+D +LQ
Sbjct:    39 NKREENLQKKRREGFNPSMASQPGQDFSSSLPT-----ETRLENIQQMIAGVMSEDRDLQ 93

Query:   117 LEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE 176
             LEAT  FR+LLSIER+PPI EV+QSGVVP  V+FL R+D+ QLQ+EAAWALTNIAS TSE
Sbjct:    94 LEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRDDFTQLQFEAAWALTNIASGTSE 153

Query:   177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL 236
             +T+V+ID GAVP+FVKLL+S ++++REQAVWALGNVAGDSP+CRD VLS EA++ LLAQ 
Sbjct:   154 NTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQF 213

Query:   237 NEHAKLSMLRTATWTLSNFCRGMPRPIFEQ-VRPALPVLAQLVHSNDKEVLTDACWALYF 295
             +EH+KLSMLR ATWTLSNFCRG P+P FEQ  + ALP L +L+HS D+EVLTDA WAL +
Sbjct:   214 HEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPALERLLHSTDEEVLTDASWALSY 273

Query:   296 LSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL 355
             LS+G N+KIQ VI+AGV PRLV+LL H S SVL PAL+TIG+IV GDD QTQ +I+  AL
Sbjct:   274 LSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALRTIGNIVTGDDIQTQAVISSQAL 333

Query:   356 PYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNW 415
             P LL LL +++KKSIK  ACWTIS ITAGN  QIQ V  AG+I PLINLL+  E  IK  
Sbjct:   334 PGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKE 393

Query:   416 AAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKN 475
             A WAISNATSGG+H+QIK+LV + CI+PLCDLLPC +P +VTV L+GLENILKVGEAEKN
Sbjct:   394 AVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLEGLENILKVGEAEKN 453

Query:   476 MDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
             +    G+ N YAQ++E+A+GL+KIENLQSH+NNEI+EK+VKILE+YW
Sbjct:   454 LGNT-GNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKAVKILESYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
 Identities = 300/460 (65%), Positives = 371/460 (80%)

Query:    66 KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEI---FAAMVAGVWSDDNNLQLEATTK 122
             K+E  L+K+R    S  F S       +L +  ++     AMVAG+WS+D+N QLEAT  
Sbjct:    40 KREENLQKKRFTS-SMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNL 98

Query:   123 FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182
              RKLLSIE++PPI EV+QSGVVPR V+FL R+D+P+LQ+EAAWALTNIAS TSE+T V+I
Sbjct:    99 LRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVII 158

Query:   183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL 242
             + GAVPIF++LL+S ++D+REQAVWALGNVAGDSP+CRDLVLS  A+ PLL+Q NE+ KL
Sbjct:   159 ESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKL 218

Query:   243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302
             SMLR ATWTLSNFCRG P P FEQ +PALPVL +LV S D+EVLTDACWAL +LS+  ND
Sbjct:   219 SMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSND 278

Query:   303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362
             KIQAVIEAGV PRL++LLGH S SVL PAL+TIG+IV GDD QTQ +++  ALP LL LL
Sbjct:   279 KIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLL 338

Query:   363 IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
              +++KKSIK  ACWTIS ITAGN +QIQAVIDAG+I  L+ +LQ+AE  +K  AAW ISN
Sbjct:   339 KNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISN 398

Query:   423 ATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD 482
             ATSGG+H+QIK++V + CIKPLCDLL C +  +VTVCL+ LENIL VGEAEKN+    G+
Sbjct:   399 ATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHT-GE 457

Query:   483 VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
              N YAQ+++EAEGLEKIENLQSH+NN+I++K+VKILET+W
Sbjct:   458 DNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
 Identities = 282/458 (61%), Positives = 345/458 (75%)

Query:    66 KKESFLRKRREA--PPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKF 123
             + E+ ++KRR    PP  + +S  P  +L     LEI A M+ GV+SDD +LQLE TT+F
Sbjct:    41 RNENLMKKRRVKVLPPDYKLISNDPFESL-----LEI-ANMITGVFSDDPSLQLEYTTRF 94

Query:   124 RKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVID 183
             R +LS +RSPP + VI+SGVVPRFVEFL ++D P+LQ+EAAWALTNIAS  SE TKVVID
Sbjct:    95 RVVLSFDRSPPTDNVIKSGVVPRFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVID 154

Query:   184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLS 243
             HG VP+FV+LLASP+DD+REQA+W LGNVAGDS +CRD VL+  A IPLL QLN HA LS
Sbjct:   155 HGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLS 214

Query:   244 MLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK 303
             +LR ATWTLSNF RG P P F+ V+  LPVL +LV+S+D++VL DACWAL  LS+  N+ 
Sbjct:   215 ILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNEN 274

Query:   304 IQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI 363
             IQ+VIEAGV PRLVELL H S  VL PAL+ IG+IV+G+  QT C+INCG LP L  LL 
Sbjct:   275 IQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLT 334

Query:   364 HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA 423
              +H + I+  ACWTIS ITAG  EQIQ+VIDA LI  L+NL Q+AE +IK  A WAISNA
Sbjct:   335 QNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNA 394

Query:   424 TSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDV 483
             + GGS  QIKYLV + CIK LCD+L C +  I+ V L GLE IL  GE +KN+     DV
Sbjct:   395 SVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGLEMILIAGEVDKNLR----DV 450

Query:   484 NQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521
             N Y+Q++E+AEGLEKIENLQ H NNEI+EK+VKIL+TY
Sbjct:   451 NCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 273/464 (58%), Positives = 345/464 (74%)

Query:    66 KKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK 125
             ++ES L+KRREA P       +P+ + +L  +L      ++ +WSD+ +L +EATT+ R 
Sbjct:    39 REESLLKKRREALPH------SPSAD-SLDQKL------ISCIWSDERDLLIEATTQIRT 85

Query:   126 LLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDH 184
             LL  E  +  +EEVIQ+G+VPRFVEFL  +D PQLQ+EAAWALTNIAS TSE+T+VVIDH
Sbjct:    86 LLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFEAAWALTNIASGTSENTEVVIDH 145

Query:   185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSM 244
             GAV I V+LL SP D +REQ VWALGN++GDSPRCRD+VL   AL  LL QLN  AKLSM
Sbjct:   146 GAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDIVLGHAALPSLLLQLNHGAKLSM 205

Query:   245 LRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKI 304
             L  A WTLSN CRG P+P F+QV  ALP LAQL+  +DKE+L   CWAL +LS+G N+KI
Sbjct:   206 LVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDDKELLAYTCWALVYLSDGSNEKI 265

Query:   305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364
             QAVIEA VC RL+ L  HRS SV++PAL+TIG+IV G+D QTQ II+  ALP L+ LL  
Sbjct:   266 QAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGNDSQTQHIIDLQALPCLVNLLRG 325

Query:   365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424
             S+ K+I+  ACWT+S ITAG + QIQAV DA +   L+NLLQN+E ++K  AAWAI NA 
Sbjct:   326 SYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALVNLLQNSEGDVKKEAAWAICNAI 385

Query:   425 SGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE------AEKNMDT 478
             +GGS++QI +LV+++CIKPLCDLL C++  +V VCL+ L+ ILKVGE      AE     
Sbjct:   386 AGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEALKKILKVGEVFSSRHAEGIYQC 445

Query:   479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
                +VN +AQL+EEAEGLEKIE LQSHENN+I+E +VKILETYW
Sbjct:   446 PQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVKILETYW 489

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
 Identities = 259/433 (59%), Positives = 326/433 (75%)

Query:    94 LQTRLEI-FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLM 152
             +++ L +    MV GV+SD    Q++ATTKFRKLLS ER+PPIE VI++GVV RFVEFL 
Sbjct:    76 IESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL- 134

Query:   153 REDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNV 212
             R  +  +Q+EAAWALTNIAS +++ T+VVI+ GAVPIFV+LL+SP  D+REQAVWALGN+
Sbjct:   135 RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNI 194

Query:   213 AGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPAL 271
             AGDSP+CRD VL+  AL PLL  +N+  K+SMLR ATWTLSNFCRG  P+P +  + PAL
Sbjct:   195 AGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPAL 254

Query:   272 PVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPA 331
             PVLA+L++  D EVL DACWA+ +LS+G N+KIQAVIEAG+  RLVELL H S+SV +PA
Sbjct:   255 PVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPA 314

Query:   332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQA 391
             L+++G+IV GDD QTQ IINCGALP LL LL  S K  I+  ACWTIS ITAGN  QIQ+
Sbjct:   315 LRSVGNIVTGDDVQTQVIINCGALPALLSLL-SSTKDGIRKEACWTISNITAGNSSQIQS 373

Query:   392 VIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLP 449
             VIDAG+I PL++LL N +   +  A WAISNATSGG    +QI+YLV + CIKPLCDLL 
Sbjct:   374 VIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLA 433

Query:   450 CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNE 509
             C +  I+ V L GLENILKVGE +K        VN+YA  +EEA G+EKI + Q++ N E
Sbjct:   434 CPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEE 493

Query:   510 IHEKSVKILETYW 522
             I+ K+  I+E Y+
Sbjct:   494 IYMKAYNIIEKYF 506

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 272/475 (57%), Positives = 341/475 (71%)

Query:    60 IEQVNLKKESFLRKRRE--APPSQQFLSFAPAPNLN-----LQTRL-EIFAAMVAGVWSD 111
             +E    K+E  L KRR       +   S   AP+ +      +++L E    MV GV+S+
Sbjct:    34 VEIRKAKREENLAKRRGIGTGADRPGASLGAAPDSDDDTAPTESQLNEDLPQMVQGVFSE 93

Query:   112 DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIA 171
               + Q++ATTKFRKLLS ER+PPIEEVI++GVV RFVEFL R  +  +Q+EAAWALTNIA
Sbjct:    94 SIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTLVQFEAAWALTNIA 152

Query:   172 SKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIP 231
             S ++  T+VVI+ GAVPIFV+LL SP  D+REQAVWALGN+AGDSP+CRD VLS  AL P
Sbjct:   153 SGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQCRDYVLSCGALKP 212

Query:   232 LLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDAC 290
             LL  L +  KLSMLR ATWTLSNFCRG  P+P +  + PALPVLA+LV+S D EVL DAC
Sbjct:   213 LLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKLVYSLDDEVLIDAC 272

Query:   291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCII 350
             WA+ +LS+G NDKIQAVIEAG+  RLVELL H S+SV +PAL+++G+IV GDD QTQ II
Sbjct:   273 WAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGDDVQTQVII 332

Query:   351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI 410
             NCGALP LL LL  S+K  I+  ACWTIS ITAGN  QIQ+V+DA +I PLI+LL N ++
Sbjct:   333 NCGALPCLLSLL-GSNKDGIRKEACWTISNITAGNSAQIQSVVDANIIPPLIHLLSNGDL 391

Query:   411 NIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468
               +  A WAISNATSGG    +QI+YLV + CIKPLCDLL C +  I+ V L GLENILK
Sbjct:   392 KTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKIIQVALDGLENILK 451

Query:   469 VGEAEKNMDTAIGD-VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
             VG+ +K       D +N+YA  +EE  G+EKI   Q++ N EI+ K+  I+E Y+
Sbjct:   452 VGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKAFNIIEKYF 506

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 259/471 (54%), Positives = 349/471 (74%)

Query:    53 KEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDD 112
             +E  + +I + N ++ES L+KR +A P    +      +L +  RLE   ++VA + S++
Sbjct:    26 REEASLSIRK-NKREESLLKKRTQAVPGSTPVK---VDSL-INQRLEQLPSLVAEINSEN 80

Query:   113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172
              +L L++TT FRKLLSIE+SPPIEEVI++G+VPR V+FL  +D+PQLQ+EAAWALTNIAS
Sbjct:    81 PDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAWALTNIAS 140

Query:   173 KTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPL 232
              T E T+VVI++GA+ +FV LL+SP+DD+REQAVWALGN+AGDS  CRDLVLS  AL PL
Sbjct:   141 GTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLVLSHNALPPL 200

Query:   233 LAQLNEHA--KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDAC 290
             L+ L   A  K+SM+R ATWTLSNFCRG P+P FE VR +LPVLA+L++  D+EVL DAC
Sbjct:   201 LSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYYQDEEVLIDAC 260

Query:   291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCII 350
             WAL +LS+G N++IQ VI+A VC ++VELLGH + +V +PAL+TIG+IV GDD QTQ ++
Sbjct:   261 WALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNIVTGDDNQTQIVL 320

Query:   351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI 410
             +  AL +LL LL  S K++I+  ACWTIS ITAG++ QIQ VIDA +I  L+ LL NAE 
Sbjct:   321 SVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSLVYLLANAEF 379

Query:   411 NIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470
              I+  AAWAISNATS G+ +QI +LV + C+KPLCDLL  ++P I+ V L+G+ENIL  G
Sbjct:   380 EIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAG 439

Query:   471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521
             + E      +  VN Y +++E+A+GL KI +LQ H N +  EK  +I+ TY
Sbjct:   440 KKEAQ----VTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5985	0.7441	0.7761	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4121	0.8246	0.8968	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5961	0.7441	0.7761	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5086	0.8407	0.8671	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5399	0.7477	0.7755	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5586	0.8032	0.8701	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7086	0.8157	0.8652	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5961	0.7441	0.7761	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5985	0.7441	0.7761	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7456	0.8050	0.8555	yes	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7114	0.8139	0.8520	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	559
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-179
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-30
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-20
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-16
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-09
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-08
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	1e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-07
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	9e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam01749	97	pfam01749, IBB, Importin beta binding domain	7e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-05
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.002
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.004
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.004

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  516 bits (1331), Expect = e-179
 Identities = 248/474 (52%), Positives = 314/474 (66%), Gaps = 22/474 (4%)

Query: 61  EQVNL---KKESFLRKRR-----EAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDD 112
           +QV L   K+E  L KRR            F+          Q        +   ++SDD
Sbjct: 32  QQVELRKQKREELLNKRRNLADVSEEAESSFIPME-------QQFYSELPQLTQQLFSDD 84

Query: 113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172
              QL+A  KFRKLLS E SPPI+ VI +GVVPRFVEF+       LQ+EAAWALTNIAS
Sbjct: 85  IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS 144

Query: 173 KTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPL 232
            T++ TKVV+D GAVP+F++LL+S  DD+REQAVWALGN+AGDS  CRD VL   AL PL
Sbjct: 145 GTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL 204

Query: 233 LAQLNEHA-KLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDAC 290
           L  L   A  +SMLR ATWTLSN CRG  P P +  +  ALP+LA+L++S D EVL DAC
Sbjct: 205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDAC 264

Query: 291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCII 350
           WA+ +LS+G N+KIQAV++ G+  RLVELL H S+ + +PAL+++G+IV G D QTQ II
Sbjct: 265 WAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVII 324

Query: 351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI 410
           NCGAL     LL  S K++I+  ACWTIS ITAGN EQIQAVIDA LI PLI+LL +AE 
Sbjct: 325 NCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY 383

Query: 411 NIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK 468
            IK  A WAISNATSGG +  + I+YLV +  IKPLCDLL   +  I+ V L  +ENILK
Sbjct: 384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443

Query: 469 VGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           VGE ++       ++N YA  VE+A G++ I  LQ   N  I++K+  I+E ++
Sbjct: 444 VGEQDRLRYGK--NINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  115 bits (290), Expect = 1e-30
 Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 2/122 (1%)

Query: 136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA 195
           E VIQ+G +P  V  L   D   +Q EAAWAL+N+++  +++ + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 196 SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255
           S ++++ + A+WAL N+A      + +VL     +P L  L + +   + + AT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 256 CR 257
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364
           +AVI+AG  P LV LL     +V   A   + ++ AG++   Q ++  G LP  LV L+ 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLP-ALVQLLK 59

Query: 365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424
           S  + +   A W +  + AG  +    V++AG +  L+NLL ++  +I+  A  A+SN  
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 425 S 425
           S
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 94.7 bits (236), Expect = 3e-23
 Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 270 ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
            LP L  L+ S+D+ V  +A WAL  LS G ND IQAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383
            AL  + ++ AG +     ++  G +P  LV L+ S  + I+ +A   +S + +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVP-KLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169
           S D N+Q EA      L S   +  I+ V+++G +P  V+ L  ED  ++   A WAL N
Sbjct: 18  SSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRN 75

Query: 170 IASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA 213
           +A+   ++  +V++ G VP  V LL S N+DI++ A  AL N+A
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 349 IINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA 408
           +I  G LP L+ LL  S +   +  A W +S ++AGN + IQAV++AG +  L+ LL++ 
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQRE-AAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 409 EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI 466
           +  +   A WA+ N  +G   +    ++    +  L +LL  +N  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 14/133 (10%)

Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
           +AVI AG +  L++LL +++ N++  AAWA+SN ++G + + I+ +V    +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLK 59

Query: 450 CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNE 509
             +  +V   L  L N+    E  K              +V EA G+ K+ NL    N +
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNK-------------LIVLEAGGVPKLVNLLDSSNED 106

Query: 510 IHEKSVKILETYW 522
           I + +   L    
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPA--LPVLAQLVHSNDKEVL 286
            +P L  L   +  ++ R A W LSN   G    I + V  A  LP L QL+ S D+EV+
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVV 66

Query: 287 TDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340
             A WAL  L+ G  D    V+EAG  P+LV LL   +  +   A   + ++ +
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 174 TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA 213
             E+ + V+D G +P  V+LL S ++++ ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 51.7 bits (125), Expect = 5e-09
 Identities = 19/40 (47%), Positives = 32/40 (80%)

Query: 174 TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA 213
           + E+ + VI+ GAVP  V+LL+SP+++++E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 55/281 (19%), Positives = 97/281 (34%), Gaps = 53/281 (18%)

Query: 118 EATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED 177
           EA    + L  ++    I E+         +  L+ ++   ++  AA AL  + S+    
Sbjct: 22  EAAAALQALAELDDL--ILELAPEAA--DELLKLLEDEDLLVRLSAAVALGELGSEE--- 74

Query: 178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN 237
                   AVP+  +LL+  +  +R+ A  ALG +              EA+ PL+  L 
Sbjct: 75  --------AVPLLRELLSDEDPRVRDAAADALGELG-----------DPEAVPPLVELLE 115

Query: 238 EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297
                 +   A   L     G  R +     P L  L      +    L  A   +   +
Sbjct: 116 NDENEGVRAAAARALGKL--GDERALD----PLLEALQDEDSGSAAAALDAALLDVRAAA 169

Query: 298 NGKNDKIQAVIEAGV---CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGA 354
                  +A+ E G     P L+ELL    + V   A   +G + + +            
Sbjct: 170 ------AEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VE 213

Query: 355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA 395
              LLV  +      ++  A   + +I  G+ E + A+  A
Sbjct: 214 AADLLVKALSDESLEVRKAALLALGEI--GDEEAVDALAKA 252

Length = 335

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNV 212
            +++  AA AL  +A    E  +  +    +P  + LL   +D++RE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 131 RSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172
                + V+ +G +P  VE L  ED  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 385 NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           + E  QAVI+AG + PL+ LL + +  ++  AAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.5 bits (109), Expect = 6e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 132 SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 172
               + VI++G VP  V+ L   D  ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 22/110 (20%)

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
           +   +E L+ +  P+++  AA AL  +               A+P  ++LL  P+ ++R 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELGDPE-----------ALPALLELLKDPDPEVRR 49

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253
            A  ALG +              EAL  LL  L +     +   A   L+
Sbjct: 50  AAAEALGKLG-----------DPEALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340
            +  QAVIEAG  P LV+LL      V   A   + ++ A
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 16/73 (21%)

Query: 61  EQVNLKK----ESFLRKRREAPPSQQFLSFAP-------APNLNLQTRLEIFAAMVAGVW 109
             V L+K    E  L++R    P +              A  L+L+  +     MV GV 
Sbjct: 30  VGVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSDADQLSLELPV-----MVQGVN 84

Query: 110 SDDNNLQLEATTK 122
           SDD   QL AT  
Sbjct: 85  SDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340
            ++  QAV++AG  P LVELL      V+  A   + ++ +
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383
             Q +I  GA+P  LV L+ S  + ++  A W +S + A
Sbjct: 4   NKQAVIEAGAVP-PLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 7e-05
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 385 NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
           + E  QAV+DAG +  L+ LL++ +  +   AAWA+SN +S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 201 IREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255
           +RE A  ALG +AG  P      + E  L+P L  L +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 21/245 (8%)

Query: 173 KTSEDTKVVI-DHG-AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALI 230
           KT E+ +  I  H  A+P+ V LL S     +  A   LG +      C++  L  + L+
Sbjct: 44  KTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVL------CKEEDLRVKVLL 97

Query: 231 -----PLLAQLNEHAKLSMLRTATWTLSNFCRG-----MPRPIF--EQVRPALPVLAQLV 278
                PLL+ L   +  +  + A   +     G     +   IF  E V P+L    Q  
Sbjct: 98  GGCIPPLLSLLKSGSAEAQ-KAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156

Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           +  DK V      AL  L    +    A +EAG    LV+LL   +S   + A   +  +
Sbjct: 157 NKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARL 216

Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           +   +     +++ GA+  LL LL   ++ S++  A   +  +++ ++E  QA+ DAG I
Sbjct: 217 MMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGI 276

Query: 399 GPLIN 403
             LIN
Sbjct: 277 PALIN 281

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 428 SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI 466
             E  + +V    +  L +LL   +  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.1 bits (82), Expect = 0.004
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383
           DD   Q +++ G LP  LV L+ S  + +   A W +S +++
Sbjct: 1   DDENKQAVVDAGGLP-ALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 270 ALPVLAQLVHSNDKEVLTDACWAL 293
           A+P L QL+ S D+EV  +A WAL
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWAL 36

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	559
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.93
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.87
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.82
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.78
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.77
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.75
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.7
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.69
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.68
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.67
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.67
PRK09687	280	putative lyase; Provisional	99.67
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.66
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.65
PRK09687	280	putative lyase; Provisional	99.63
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.62
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.59
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.57
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.57
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.57
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.57
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.56
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.52
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.52
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.46
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.44
PTZ00429	746	beta-adaptin; Provisional	99.44
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.43
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.42
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.42
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.41
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.35
PTZ00429	746	beta-adaptin; Provisional	99.33
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.28
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.22
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.22
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.14
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.13
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.11
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.11
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.1
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.03
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.01
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.01
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.01
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.99
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.95
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.9
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.89
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.85
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.83
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.82
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.81
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.78
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.73
COG5369	743	Uncharacterized conserved protein [Function unknow	98.72
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.7
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.69
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.69
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.68
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.65
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.65
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.64
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.56
TIGR02270	410	conserved hypothetical protein. Members are found	98.54
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.52
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.47
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.47
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.46
COG5369	743	Uncharacterized conserved protein [Function unknow	98.45
PF05536	543	Neurochondrin: Neurochondrin	98.42
TIGR02270	410	conserved hypothetical protein. Members are found	98.41
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.4
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.4
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.37
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.37
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.35
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.34
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.32
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.3
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.3
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.3
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.3
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.27
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.25
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.23
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.21
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.16
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.13
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.12
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.12
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.11
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.1
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.05
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.02
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.02
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.01
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.99
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.97
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.95
PF05536	543	Neurochondrin: Neurochondrin	97.95
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.92
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.91
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.91
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.9
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.89
KOG0567	289	consensus HEAT repeat-containing protein [General	97.86
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.85
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.85
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.81
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.79
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.73
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.71
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.68
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	97.68
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.6
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.58
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.57
KOG0567	289	consensus HEAT repeat-containing protein [General	97.52
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.5
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.5
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.46
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.45
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.45
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.43
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.42
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.32
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.28
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.28
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.28
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.24
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.22
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.19
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.19
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.16
PRK14707	2710	hypothetical protein; Provisional	97.1
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.1
PF05004	309	IFRD: Interferon-related developmental regulator (	97.08
PRK14707	2710	hypothetical protein; Provisional	97.08
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.07
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.03
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.01
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.96
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.84
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.81
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.78
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.77
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.77
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.75
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.74
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.73
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.68
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.66
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.58
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.57
KOG3036	293	consensus Protein involved in cell differentiation	96.53
PF05004	309	IFRD: Interferon-related developmental regulator (	96.51
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.49
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.4
KOG2025	892	consensus Chromosome condensation complex Condensi	96.3
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.27
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.23
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.15
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.1
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.08
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.08
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.07
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.01
KOG1243	690	consensus Protein kinase [General function predict	95.99
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.88
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.84
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.83
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.82
KOG2956	516	consensus CLIP-associating protein [General functi	95.76
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.76
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.75
KOG3036	293	consensus Protein involved in cell differentiation	95.74
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.73
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.68
KOG2956	516	consensus CLIP-associating protein [General functi	95.67
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.63
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.6
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.54
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.42
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.36
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.32
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.24
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.15
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.07
KOG1243	690	consensus Protein kinase [General function predict	94.94
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.91
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.89
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.86
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.77
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.6
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.52
KOG2032	533	consensus Uncharacterized conserved protein [Funct	94.44
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.4
KOG2025	892	consensus Chromosome condensation complex Condensi	94.33
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.32
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.21
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.2
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.18
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.17
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.12
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.06
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.06
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.94
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.93
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.93
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.69
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.58
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.54
COG5098	1128	Chromosome condensation complex Condensin, subunit	93.51
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	93.44
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.3
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	93.17
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.78
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.69
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	92.58
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.47
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.44
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	92.06
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.97
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.86
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	91.82
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	91.69
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.59
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.55
KOG2137	700	consensus Protein kinase [Signal transduction mech	91.47
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.25
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.04
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	90.97
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	90.84
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	90.74
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	90.52
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	90.16
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	90.1
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	90.08
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	89.86
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	89.86
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.84
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	89.82
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	89.8
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	89.49
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	89.17
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	88.91
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	88.75
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	88.59
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.45
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	88.27
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.09
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.94
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	87.59
KOG0413	1529	consensus Uncharacterized conserved protein relate	87.53
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	87.25
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	86.99
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.97
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.46
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	86.26
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.22
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	85.5
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	85.41
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	85.31
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	85.05
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.81
KOG2005	878	consensus 26S proteasome regulatory complex, subun	84.78
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.49
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	84.45
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.89
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	83.66
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	83.39
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.36
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	83.09
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	82.97
KOG1988	970	consensus Uncharacterized conserved protein [Funct	82.79
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	82.78
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	82.77
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	82.65
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	82.5
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.4
KOG0413	1529	consensus Uncharacterized conserved protein relate	82.38
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	82.2
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	81.88
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	81.8
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	81.61
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	81.05

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.8e-86  Score=603.16  Aligned_cols=488  Identities=51%  Similarity=0.786  Sum_probs=446.8

Q ss_pred             hhhHHHHhhhHHHHHhhhcCCCCCCCccCCCCCCCchhh-hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchH
Q 042204           57 NTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQ-TRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPI  135 (559)
Q Consensus        57 ~~~~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~  135 (559)
                      -....||+||||.|+||||....++...    .+.-+.+ +....+|.+.+.|.|+|.+.|+.|+..+|+++|.+..||+
T Consensus        32 QQvElRkqKreE~LnKrRNl~dv~e~a~----ss~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPI  107 (526)
T COG5064          32 QQVELRKQKREELLNKRRNLADVSEEAE----SSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPI  107 (526)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccchhh----hccCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCc
Confidence            3455899999999999999833222111    1111122 2234689999999999999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCC
Q 042204          136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD  215 (559)
Q Consensus       136 ~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~  215 (559)
                      +.++++|++|.|+++++......++++|+|+|+||++|+..++..++++|++|.++++|.+++.+++++++|+|+|+++|
T Consensus       108 q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD  187 (526)
T COG5064         108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD  187 (526)
T ss_pred             hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence            99999999999999996555468999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHH
Q 042204          216 SPRCRDLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWAL  293 (559)
Q Consensus       216 ~~~~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L  293 (559)
                      ++.+|+.++..|++.+++.++..+ .+..+.++++|+|+|||+++ |.+....+...+|.|.+++.+.|+++..+|||++
T Consensus       188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi  267 (526)
T COG5064         188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI  267 (526)
T ss_pred             chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            999999999999999999999544 35789999999999999999 8888899999999999999999999999999999


Q ss_pred             HHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 042204          294 YFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNH  373 (559)
Q Consensus       294 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~  373 (559)
                      +||++++.+.++.+++.|+.++|+++|.+++..++.+|++.+|||+++++.+++.++++|+++.+..+|.++ ...+|++
T Consensus       268 SYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKE  346 (526)
T COG5064         268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKE  346 (526)
T ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 8899999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhcCCCC
Q 042204          374 ACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG--SHEQIKYLVREKCIKPLCDLLPCA  451 (559)
Q Consensus       374 a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~  451 (559)
                      |||+++||++|+.++++.+++.+++|.|+++|...+..++++||||++|.+.++  .|+.+++|+++|+|++||++|...
T Consensus       347 aCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~  426 (526)
T COG5064         347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV  426 (526)
T ss_pred             hheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999876  578999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCCCC
Q 042204          452 NPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVVGPQP  531 (559)
Q Consensus       452 d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~~~~~  531 (559)
                      |.++.+++++++.++++.++.+.....  ...|.|..++++.||+++|..||++.|.+||.+|+.||++||++|+.-+++
T Consensus       427 dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~l  504 (526)
T COG5064         427 DNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDEL  504 (526)
T ss_pred             CccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhc
Confidence            999999999999999999998765432  356889999999999999999999999999999999999999998877789


Q ss_pred             CCCCCCCCCCCCCCCcCCCccccCCc
Q 042204          532 GPQPGLPHAGNEGEDALGSNVITNGK  557 (559)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (559)
                      +|++    .||.  |.||++.-.-|.
T Consensus       505 apet----~g~t--ftfg~~~~~qg~  524 (526)
T COG5064         505 APET----AGNT--FTFGSNVNQQGN  524 (526)
T ss_pred             Cccc----cCCe--eecCCCccccCC
Confidence            9988    5666  889998766553

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-81  Score=617.39  Aligned_cols=480  Identities=60%  Similarity=0.898  Sum_probs=438.0

Q ss_pred             chhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCCCCCccCCCCCCCchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 042204           46 DEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK  125 (559)
Q Consensus        46 ~~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~  125 (559)
                      +.++++-+..=+..-.||+||+|.++|||+..+.....     ......+......+.+++.+.|+++..++.++..+|+
T Consensus        18 ~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~S~~~~~q~~a~~~~rk   92 (514)
T KOG0166|consen   18 DAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLD-----ELLSDSQSQASNLELMLAALYSDDPQQQLTATQAFRK   92 (514)
T ss_pred             cHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccc-----cccchhHHHhhhhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            44555655555677799999999999999922111110     0011112222347889999999999999999999999


Q ss_pred             hccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHH
Q 042204          126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQA  205 (559)
Q Consensus       126 lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a  205 (559)
                      ++|.+.+|+++.++..|+||.||++|...+++.+|++|+|+|+|||+++.+++..++++|++|.|+.++.+++..++++|
T Consensus        93 llS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQa  172 (514)
T KOG0166|consen   93 LLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQA  172 (514)
T ss_pred             HHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHH
Confidence            99999899999999999999999999877779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHh
Q 042204          206 VWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKE  284 (559)
Q Consensus       206 ~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~  284 (559)
                      +|+|+||+++++.+|+.+++.|++.+|+.++..+....++++++|+|+|||+++ |.+.+..+..++|.|..++++.|++
T Consensus       173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~  252 (514)
T KOG0166|consen  173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEE  252 (514)
T ss_pred             HHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999999999999999999976666789999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 042204          285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH  364 (559)
Q Consensus       285 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~  364 (559)
                      |+.+|||+++||+++.++.++.+++.|++++|+.+|.+.+..++.+|++++|||+++++.+++.++++|+++.|..++..
T Consensus       253 Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~  332 (514)
T KOG0166|consen  253 VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS  332 (514)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999984


Q ss_pred             CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHH
Q 042204          365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPL  444 (559)
Q Consensus       365 ~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L  444 (559)
                      .+...+|++|||+++||++|++++++.+++.|++|.|+++|+.+++++|++|+|||+|++.+++++++.+|++.|+|++|
T Consensus       333 s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~pl  412 (514)
T KOG0166|consen  333 SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPL  412 (514)
T ss_pred             CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhh
Confidence            43777999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204          445 CDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG  524 (559)
Q Consensus       445 ~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~  524 (559)
                      |++|.-.|.+++.+++++|.+|++.++.....    ++ +++..+|+++||+++||.||.|+|.+||++|+.||++||+.
T Consensus       413 cdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~  487 (514)
T KOG0166|consen  413 CDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE  487 (514)
T ss_pred             hhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999987643    12 88999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCC
Q 042204          525 RVVGPQPGPQP  535 (559)
Q Consensus       525 ~~~~~~~~~~~  535 (559)
                      |++++.-.+.+
T Consensus       488 e~~~~~~~~~~  498 (514)
T KOG0166|consen  488 EDDEDDQQPTT  498 (514)
T ss_pred             Ccccccccccc
Confidence            86665433444

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-44  Score=352.28  Aligned_cols=368  Identities=26%  Similarity=0.388  Sum_probs=329.7

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.+|.+|+.|.. .++.+|++|+|+|.++.++. .+....++++|.+|.|+.++.+++ .+++++|+|+|+||+.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            789999999974 55899999999999999876 778888999999999999999999 899999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204          178 TKVVIDHGAVPIFVKLLASPND-DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC  256 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~  256 (559)
                      |+.+++.|++++|+.++...+. .+.+++.|+|.|+|.........-.-..+++.|..++ .+.|.+++..+||++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988665 7788999999999976522122222234678888888 8889999999999999999


Q ss_pred             cCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHH
Q 042204          257 RGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG-HRSSSVLSPALQT  334 (559)
Q Consensus       257 ~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~  334 (559)
                      .+.+... .....|++|.|+++|.+.+..++..|+++++|++.+++.+.+.+++.|+++.|..+|. ++...++..|+|+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            8874444 3445899999999999999999999999999999999999999999999999999999 5667799999999


Q ss_pred             HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      |+||+.|+.++++.++++|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++.|+++|.-.|.++.
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            9999999999999999999999999999999 89999999999999998 789999999999999999999998999999


Q ss_pred             HHHHHHHHHHhcCCCH-------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          414 NWAAWAISNATSGGSH-------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~-------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      ..++.++.|+...+..       .....+-+.|+++.+..|-.+++.++...|...+.+++..+
T Consensus       425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            9999999999875432       23455667899999999999999999999999999988554

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.9e-41  Score=381.82  Aligned_cols=407  Identities=22%  Similarity=0.248  Sum_probs=346.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           98 LEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        98 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      .+.+|.+++.|.++++..|..|++.+.++++.. .+++..+++.|+||.|+++|++++++.+|++|+|+|+||+++++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            478999999999999999999999988776553 5689999999999999999987654799999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHhhCCCC---------HHHHHHHHHHHHHHhCCCch-----------hhhhh---hccCCHHHHHH
Q 042204          178 TKVVIDHGAVPIFVKLLASPN---------DDIREQAVWALGNVAGDSPR-----------CRDLV---LSEEALIPLLA  234 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~r~~i---~~~g~l~~Ll~  234 (559)
                      +..+++.|++|.|++++.+++         ..++++|+|+|+|||++.+.           .|+..   ...|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999998655         34699999999999987543           22222   34577888888


Q ss_pred             HhchhhhHhHH----HHHHHHHHHhhcCC-CCCcHhh-------------------HhchHHHHHHhhccCCHhHHHHHH
Q 042204          235 QLNEHAKLSML----RTATWTLSNFCRGM-PRPIFEQ-------------------VRPALPVLAQLVHSNDKEVLTDAC  290 (559)
Q Consensus       235 ll~~~~~~~~~----~~a~~~L~nL~~~~-~~~~~~~-------------------~~~~l~~L~~lL~~~d~~v~~~a~  290 (559)
                      .+. ..+...+    ..++|+|.+|++++ |...+..                   ..++++.|+.++...+.+++.+++
T Consensus       347 l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            774 3333222    35789999999987 3332211                   135667888999989999999999


Q ss_pred             HHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 042204          291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSI  370 (559)
Q Consensus       291 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v  370 (559)
                      |+|++++.++++..+.+.+.|+++.|+++|.+++..++..|+++|+|++.+++++++.++++|++|.|+.+|.++ +..+
T Consensus       426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i  504 (2102)
T PLN03200        426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA  504 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence            999999999999999999999999999999999999999999999999999998899999999999999999999 9999


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHH-HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204          371 KNHACWTISKITAGNREQIQAVI-DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP  449 (559)
Q Consensus       371 ~~~a~~~L~nl~~~~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  449 (559)
                      +++|+|+|+|++.+ +++++.++ +.|+++.|+++|.++++++++.|+|+|.|++..++.+.         ++.|+.+|.
T Consensus       505 qeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLl  574 (2102)
T PLN03200        505 KEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLL  574 (2102)
T ss_pred             HHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhc
Confidence            99999999999885 45556655 78999999999999999999999999999998876554         377888999


Q ss_pred             CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCC
Q 042204          450 CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVV  527 (559)
Q Consensus       450 ~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~  527 (559)
                      ++++.+...+++++.+++...+..+          ...+.....||++.|.+|+.|+++++|+.|.++|.+||....+
T Consensus       575 sdd~~~~~~aL~vLgnIlsl~~~~d----------~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        575 GDLPESKVHVLDVLGHVLSVASLED----------LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             CCChhHHHHHHHHHHHHHhhcchhH----------HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            9999999999999999987655421          1233345679999999999999999999999999999986543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.2e-42  Score=318.14  Aligned_cols=366  Identities=25%  Similarity=0.337  Sum_probs=321.2

Q ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204           98 LEIFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        98 ~~~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      .+.+|++++.+. ....-.+++|+|+|.++.|+. ......++++|.+|.|+++|.+++ .+++++|.|+|+||+.+++.
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence            378999999995 455678999999999999886 666777889999999999999998 89999999999999999999


Q ss_pred             hHHHHHhCCCHHHHHHhhCCCC--HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          177 DTKVVIDHGAVPIFVKLLASPN--DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      +|+.+.+.|++.+++.++.+..  ..+.+.+.|.|+|+|.......+.-.-..+++.|.+++ ...|+++...|||+++.
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSY  269 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISY  269 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence            9999999999999999988744  47788999999999954322122211123577777777 78899999999999999


Q ss_pred             hhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204          255 FCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ  333 (559)
Q Consensus       255 L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  333 (559)
                      |+.+...... ....++.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+-.+|+++...++..|||
T Consensus       270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW  349 (526)
T COG5064         270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW  349 (526)
T ss_pred             hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence            9998733333 334778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC---CHHHHHHHHHcCCHHHHHHHhhcCCh
Q 042204          334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG---NREQIQAVIDAGLIGPLINLLQNAEI  410 (559)
Q Consensus       334 ~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~li~~~~i~~Li~lL~~~~~  410 (559)
                      +|+||..++.++++.+++++++|.|+.+|.+. +..+|++|||+++|.+.|   .|+.++++++.|++.+|+++|.-.+.
T Consensus       350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN  428 (526)
T COG5064         350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN  428 (526)
T ss_pred             eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence            99999999999999999999999999999998 999999999999999974   68999999999999999999999888


Q ss_pred             hHHHHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204          411 NIKNWAAWAISNATSGGSH----------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       411 ~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il  467 (559)
                      ++.+.++.++.|+...|..          ....++-+.|+++.+..+.++.+..+...+...+..++
T Consensus       429 kiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         429 KIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             cchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            8999999999999987632          23345455899999999999999999999999998877

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=9.7e-39  Score=360.00  Aligned_cols=415  Identities=18%  Similarity=0.169  Sum_probs=368.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.++.|+..|.+.+.+.|.++++.|+.+..++ .+.++.+++.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            45678899999999999999999999976553 778999999999999999999988 8999999999999999899999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.++.|..+.+.|++++|+.+| .+.+...++.++|+|.+++..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888999999999999 556789999999999999753


Q ss_pred             CCCCc-----------------------------------H---hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204          259 MPRPI-----------------------------------F---EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK  300 (559)
Q Consensus       259 ~~~~~-----------------------------------~---~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  300 (559)
                      .....                                   .   ....++++.|+.++.++++.++..|+|+|.+++.+.
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            31100                                   0   002468999999999999999999999999999999


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204          301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD-FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS  379 (559)
Q Consensus       301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  379 (559)
                      .+..+.++..|+++.++.+|.+.+..++..++|+|+|++.+.. .+...+++.|++++|+++|.+. +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            9888999999999999999999999999999999999997544 4556778999999999999998 9999999999999


Q ss_pred             HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH--HHHHHHcCChHHHHhcCCCCChHHHH
Q 042204          380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ--IKYLVREKCIKPLCDLLPCANPTIVT  457 (559)
Q Consensus       380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~--~~~l~~~~~l~~L~~lL~~~d~~v~~  457 (559)
                      |++.. ++....+.+.|+++.|+++|++++++.|+.|+|+|.+++...+.++  ..++...|.+.+|+++|+..|.+...
T Consensus       720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            99865 4566778888999999999999999999999999999999876555  36677899999999999999988777


Q ss_pred             H--HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204          458 V--CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG  524 (559)
Q Consensus       458 ~--~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~  524 (559)
                      .  ++++|..+.+..+...      ...+++..++|..++++.|.....|.+|.++++|..||+++..+
T Consensus       799 ~~~al~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~  861 (2102)
T PLN03200        799 TSEALEALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD  861 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence            6  9999999998654432      24578999999999999997777999999999999999999864

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-29  Score=233.60  Aligned_cols=402  Identities=19%  Similarity=0.197  Sum_probs=335.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.+..+...+++.++.+|..|...+.++.-.  ....-.++..+++..|+.-+..+. ..+|..+..|++|++. .++++
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk  160 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNK  160 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccch
Confidence            3556777889999999999999999997654  455566677778888777666666 5999999999999999 48899


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..+...|++.++..+-++++..++..+..+|.|+.. +.+.|..+...|+++.|+.++ +..+..++..++.+++|+.-.
T Consensus       161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd  238 (550)
T KOG4224|consen  161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD  238 (550)
T ss_pred             hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence            999999999999998889999999999999999964 456688889999999999999 788999999999999999877


Q ss_pred             CCCCcHhhH--hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204          259 MPRPIFEQV--RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG  336 (559)
Q Consensus       259 ~~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  336 (559)
                      .........  ..++|.|+.++.++++.++-.|..+|++++. +.+.+..++++|.+|.++++|+++..........||.
T Consensus       239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr  317 (550)
T KOG4224|consen  239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIR  317 (550)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence            644444333  4499999999999999999999999999995 4456678999999999999999988888888999999


Q ss_pred             HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHH
Q 042204          337 HIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWA  416 (559)
Q Consensus       337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a  416 (559)
                      ||+-..-.. ..+.++|++.+|+.+|...++.+++..|..+|.|+++.+......+.+.|.+|.++.++.++...+|.+.
T Consensus       318 nisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei  396 (550)
T KOG4224|consen  318 NISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI  396 (550)
T ss_pred             hcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence            998755432 3577899999999999988677799999999999998778888899999999999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHh---
Q 042204          417 AWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEA---  493 (559)
Q Consensus       417 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~---  493 (559)
                      ..++..++..  .....++.+.|+++.|+.++.+.+.+++-++..+|.|+...-+             .|...++.-   
T Consensus       397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~-------------~YarviEawd~P  461 (550)
T KOG4224|consen  397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE-------------HYARVIEAWDHP  461 (550)
T ss_pred             HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH-------------HHHHHHHHhcCc
Confidence            9999999885  3567788999999999999999999999999999999875433             345544432   


Q ss_pred             --ccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          494 --EGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       494 --g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                        |.-..|.....+....++..|.|-|.+...
T Consensus       462 ~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  462 VQGIQGRLARFLASHELTFRHIARWTIQQLLE  493 (550)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence              222344555555556666666666665543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.4e-28  Score=225.32  Aligned_cols=362  Identities=20%  Similarity=0.273  Sum_probs=315.1

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204           97 RLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        97 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      .+..+..++....++..+.|..++.++.+++..  +.....+...|++..+.++-++.+ ..+|..+..+|.|+.. ..+
T Consensus       124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E  199 (550)
T KOG4224|consen  124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE  199 (550)
T ss_pred             eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence            356777888888888889999999999998776  677778889999999999888887 8999999999999998 899


Q ss_pred             hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccC--CHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEE--ALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      +|+.++.+|++|.|+.++++.+.+++..|..+++||+.+.. .|..+.+.+  .++.|+.++ .+.+..++..|..+|.|
T Consensus       200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn  277 (550)
T KOG4224|consen  200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN  277 (550)
T ss_pred             hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999987754 477777777  899999999 77888999999999999


Q ss_pred             hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC-CcchhhHHH
Q 042204          255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS-SSVLSPALQ  333 (559)
Q Consensus       255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~al~  333 (559)
                      ++............+.+|.++++++++..........|+.|++-++-.. ..+++.|++..|+.+|...+ ++++..|..
T Consensus       278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHH
Confidence            9998766666667899999999999988888888888999999655433 46889999999999999865 459999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       334 ~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      +|.|++.........+.++|.++.+..++... ...+|.+...+++.++. +......+.+.|++|.|+.++.+.+.+++
T Consensus       357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~  434 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVR  434 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhc
Confidence            99999998888888899999999999999988 88999999888888865 45567889999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHH------cCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVR------EKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ..|+.||.|++..  .++...+++      .|+-..|..++.+.+..++..+.|.+..++..
T Consensus       435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED  494 (550)
T ss_pred             ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999984  455555554      35556788888888888899999999888743

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=3.2e-24  Score=225.15  Aligned_cols=388  Identities=20%  Similarity=0.171  Sum_probs=317.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      .++-..++..+ .....+...|.+++..  ......+.+.|+|+.|+++|++++ .++...++.+|.+++. ..+++..+
T Consensus       253 kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM  327 (708)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            44444444443 4445677788887654  677888899999999999999988 8999999999999999 78899999


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204          182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR  261 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~  261 (559)
                      .+.|+++.|.+++.+++.+++..++++|.|++.+ +..|..+.+.|.++.|+.+|.+   +..+..++.+|++++.....
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence            9999999999999999999999999999999877 4569999999999999999943   34556789999999998765


Q ss_pred             CcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204          262 PIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       262 ~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  340 (559)
                      .......+++|.+++++. .+++.+...+++.+.|++... ...+.+.+.+.++.|+........   ...+..+.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence            656666789999998764 456777888899999999554 466888888899999988655433   235578999998


Q ss_pred             CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhHHHHHHH
Q 042204          341 GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINIKNWAAW  418 (559)
Q Consensus       341 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~~~a~~  418 (559)
                      ++......+.  +.+..|+.++..+++++...++..+|+|++..+.+..+.+.+.+++|.|.++|..+  ++++..+++.
T Consensus       480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            8754333333  47788888888776889999999999999876555555555789999999999765  5689999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC--CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccH
Q 042204          419 AISNATSGGSHEQIKYLVREKCIKPLCDLLPC--ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL  496 (559)
Q Consensus       419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l  496 (559)
                      .++.++.  +++....+.+.|+++.|+++|..  +|.+++.+++.++.+++...+.             ...++.+.++.
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~  622 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIP  622 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchH
Confidence            9999987  67888888999999999999954  5789999999999999976543             45667889999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHH
Q 042204          497 EKIENLQSHENNEIHEKSVKILE  519 (559)
Q Consensus       497 ~~l~~L~~~~~~~v~~~a~~il~  519 (559)
                      ..+..|.++.|++|++.|..+++
T Consensus       623 ~ylidL~~d~N~~ir~~~d~~Ld  645 (708)
T PF05804_consen  623 AYLIDLMHDKNAEIRKVCDNALD  645 (708)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999987765554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.93  E-value=2.4e-23  Score=218.61  Aligned_cols=360  Identities=20%  Similarity=0.213  Sum_probs=299.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.++.|++.|.+++.+....++..|.++.-.  .++...|.+.|+++.|++++.+++ .+++..|+++|.|++. +++.|
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence            6789999999999999999999999997443  678999999999999999999988 8999999999999999 89999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..+++.|++|.|+.+|.++  ..+..|+.+|.+++.+. ..|..+...+.++.++.++...++..+...+++.+.|++..
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999865  46677999999998765 56889999999999999987777777777889999999998


Q ss_pred             CCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHH
Q 042204          259 MPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIG  336 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~  336 (559)
                      ..........++++.|+.... ..|+-    .+..++|++.+++.....+.  +.+..|+.++... ++.....++.+|+
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa  516 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA  516 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence            755554455678888887654 44433    33589999988754434443  4678888887764 5678899999999


Q ss_pred             HhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHH
Q 042204          337 HIVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN--AEINIK  413 (559)
Q Consensus       337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~  413 (559)
                      |+...+....+.+.+.+++|.|..+|..+ ..+++.-+++..++.++. ++.....+.+.|+++.|+.+|..  +|.++.
T Consensus       517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V  595 (708)
T PF05804_consen  517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIV  595 (708)
T ss_pred             hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence            99987666666666789999999999654 245799999999998874 56777777899999999999975  478999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHH-HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhc
Q 042204          414 NWAAWAISNATSGGSHEQIKYLV-REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEK  474 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~  474 (559)
                      .+.++++.++..+.  +.+..++ +.+++..|+++++++++.++..|-.+|.-+....+.+.
T Consensus       596 lQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~  655 (708)
T PF05804_consen  596 LQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA  655 (708)
T ss_pred             HHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            99999999999973  4555555 47899999999999999999999999999998877653

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.3e-19  Score=182.96  Aligned_cols=393  Identities=19%  Similarity=0.271  Sum_probs=315.5

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      ..+..|++.|+.. |+..|++|+..+..+++..+.+...-+--.-++|.|+.+|++..+++++..|+++|++++..-|..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            4677889999876 999999999999999987755555555455689999999999988999999999999999999999


Q ss_pred             HHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204          178 TKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC  256 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~  256 (559)
                      ...+|+.++||.|+.-|. -...++.++++.+|-.|+...+.   .++..|++...+..| +-....+++.|+.+.+|+|
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~C  322 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCC  322 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999998554 48899999999999999977654   577899999999888 6667889999999999999


Q ss_pred             cCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChhHHHHHHHhCcHHHHHHhhCCCC----Ccchh
Q 042204          257 RGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG---KNDKIQAVIEAGVCPRLVELLGHRS----SSVLS  329 (559)
Q Consensus       257 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~~~~----~~v~~  329 (559)
                      ..-+...+..+...+|.|..+|++.|...++.+|-++.+++++   .++..+.+...|++....++|.-..    ..+..
T Consensus       323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence            9988888888999999999999999999999999999999854   5567788999999999999987653    33556


Q ss_pred             hHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-------------chhHHHH-----------------------
Q 042204          330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-------------KKSIKNH-----------------------  373 (559)
Q Consensus       330 ~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-------------~~~v~~~-----------------------  373 (559)
                      ..++.+..++++.+-....++..++...|..+|....             .|.-..+                       
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~  482 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS  482 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence            6788899999987777677777777777777774320             0000000                       


Q ss_pred             -----------HH------------------HHHH-------------Hhh---------cCCHHHHHHHHHcCCHHHHH
Q 042204          374 -----------AC------------------WTIS-------------KIT---------AGNREQIQAVIDAGLIGPLI  402 (559)
Q Consensus       374 -----------a~------------------~~L~-------------nl~---------~~~~~~~~~li~~~~i~~Li  402 (559)
                                 +.                  ..+.             +.-         ...++..+.++.. ++|.|+
T Consensus       483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~-llpVLv  561 (1051)
T KOG0168|consen  483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD-LLPVLV  561 (1051)
T ss_pred             hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH-HHHHHH
Confidence                       00                  1111             000         0123444444443 899999


Q ss_pred             HHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccccccc
Q 042204          403 NLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVRE-KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAI  480 (559)
Q Consensus       403 ~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~  480 (559)
                      +++.+. ++.|+..++.||..+....+.+.+..++.. .+-..+-.+|.++|..++.-+|....-+++.-          
T Consensus       562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl----------  631 (1051)
T KOG0168|consen  562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL----------  631 (1051)
T ss_pred             HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh----------
Confidence            999765 899999999999999999899998887765 55567888999999999999999888888542          


Q ss_pred             CcchHHHHHHHHhccHHHHHHHhcCCCH
Q 042204          481 GDVNQYAQLVEEAEGLEKIENLQSHENN  508 (559)
Q Consensus       481 ~~~~~~~~~i~~~g~l~~l~~L~~~~~~  508 (559)
                        .+.|...|.+.|++..++.|....|+
T Consensus       632 --pd~F~~~F~REGV~~~v~~L~~~~~~  657 (1051)
T KOG0168|consen  632 --PDTFSPSFRREGVFHAVKQLSVDSNP  657 (1051)
T ss_pred             --HHHhhhhHhhhhHHHHHHHHhccCCc
Confidence              34477889999999999999874433

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.82  E-value=5.6e-18  Score=174.05  Aligned_cols=366  Identities=20%  Similarity=0.225  Sum_probs=285.1

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch--hh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR--CR  220 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~r  220 (559)
                      -+|..+.+|.+.+ +.+|..|+.-+..++.++.+.+..+.+.|+|+.|+.+|.+.+.+|+.+|+|+|-|+......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4688899999998 89999999999999999999999999999999999999999999999999999999966554  66


Q ss_pred             hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc----------C----CHhHH
Q 042204          221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS----------N----DKEVL  286 (559)
Q Consensus       221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~----------~----d~~v~  286 (559)
                      -.+.+.++++.++.++....|.++++.++.+|+||+..+ .....++...++.|..-+-.          +    +.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            678899999999999988889999999999999999984 45556667777777665421          1    36788


Q ss_pred             HHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCChH-----HH--------
Q 042204          287 TDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH------RSSSVLSPALQTIGHIVAGDDF-----QT--------  346 (559)
Q Consensus       287 ~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~-----~~--------  346 (559)
                      .++..+|+|++....+..+.+-+. |++..|+..+.+      .+..-.+.++.++.|++..-..     ..        
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            999999999998777666777664 889988888763      4556677888888888643220     00        


Q ss_pred             ------------------HH----------------------HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC-
Q 042204          347 ------------------QC----------------------IINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN-  385 (559)
Q Consensus       347 ------------------~~----------------------~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-  385 (559)
                                        ..                      +....++..-+.+|....++.+.+.++.+|-|++++. 
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                              00                      0011123333444433336778899999999999853 


Q ss_pred             --HHHH-HHH-HHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC------ChHH
Q 042204          386 --REQI-QAV-IDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA------NPTI  455 (559)
Q Consensus       386 --~~~~-~~l-i~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~------d~~v  455 (559)
                        ...+ ..+ .+..+++.|+++|..++..+.+.++.+|.|++.+.  . .+.++..++++.|++.|...      +.++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--R-NKELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--h-hhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence              2333 333 36789999999999999999999999999999953  3 34456688999999999542      3588


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHhhcCCCC
Q 042204          456 VTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH-ENNEIHEKSVKILETYWCGRV  526 (559)
Q Consensus       456 ~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~f~~~~  526 (559)
                      +..++..|.+++.....             .+..+.+.+|+++|..+..+ .++.+.+.|..++...|...|
T Consensus       629 v~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999855433             35667789999999999654 556888999999988877554

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.78  E-value=3.3e-15  Score=156.08  Aligned_cols=397  Identities=16%  Similarity=0.165  Sum_probs=299.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204          103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI  182 (559)
Q Consensus       103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  182 (559)
                      .+...|++.+.+....++..|.+++...  .+...  ..+..+.|...|.+++ +.+|..+++.|.+++.++......+.
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            3778888888888888889999988753  33222  4568899999999999 99999999999999998777788889


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC
Q 042204          183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP  262 (559)
Q Consensus       183 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~  262 (559)
                      +.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++...+..
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999876654 4566777788888888 4445567788999999998876433


Q ss_pred             cH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcc-----hh-hHHHHH
Q 042204          263 IF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSV-----LS-PALQTI  335 (559)
Q Consensus       263 ~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v-----~~-~al~~L  335 (559)
                      .. ....|+++.++..+.++|.-++.+++.+|..++. .+...+.+.+.|+++.|..++.+.+..-     .. ..+...
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            32 2336899999999999999999999999999998 5556688999999999999998743222     22 244677


Q ss_pred             HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH-HHcC-----CHHHHHHHhhcCC
Q 042204          336 GHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV-IDAG-----LIGPLINLLQNAE  409 (559)
Q Consensus       336 ~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-i~~~-----~i~~Li~lL~~~~  409 (559)
                      ++++...+....... ..++..+..++.+. ++..+..|..+++.|+. +.+..+.+ ...+     ++........++.
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            888875433222111 13555666777787 99999999999999974 45666666 3322     3444444555677


Q ss_pred             hhHHHHHHHHHHHHhcCCCH---HHH----HHH---HHcCChH-HHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccccc
Q 042204          410 INIKNWAAWAISNATSGGSH---EQI----KYL---VREKCIK-PLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDT  478 (559)
Q Consensus       410 ~~v~~~a~~aL~nl~~~~~~---~~~----~~l---~~~~~l~-~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~  478 (559)
                      .++|..++.++.++...++.   +.+    ...   ...+-.. .+.++++.+=++++..++..|..++.....      
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------  424 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------  424 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence            89999999999999655432   111    111   1234445 788888888899999999999999976543      


Q ss_pred             ccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       479 ~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                             ...++...|.++-+.+=....+.+..+.=+.++...-.
T Consensus       425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~  462 (503)
T PF10508_consen  425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK  462 (503)
T ss_pred             -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence                   34556667777777666667788888887888887763

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.77  E-value=1.1e-16  Score=164.65  Aligned_cols=362  Identities=18%  Similarity=0.207  Sum_probs=277.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch--
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE--  176 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~--  176 (559)
                      ..+|+.+.+|.+.++..|-.|+..+..+ +..++.....+.+.|.|+.||.+|.+.. .+++..|+++|.|+..++..  
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHl-cfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHL-CFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHH-HhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence            3689999999999999999999888875 6655777888889999999999999999 89999999999999998766  


Q ss_pred             hHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch-------------hhhH
Q 042204          177 DTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE-------------HAKL  242 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~-------------~~~~  242 (559)
                      ++-.+.+.++|+.++.+|.. .+.++++.+..+|+|++..+ .++..++ ...+..|...+..             ..+.
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccc
Confidence            89999999999999999986 89999999999999998763 3333333 3345555554421             1136


Q ss_pred             hHHHHHHHHHHHhhcCCC--CCcHhhHhchHHHHHHhhc------cCCHhHHHHHHHHHHHhccCChh-----H------
Q 042204          243 SMLRTATWTLSNFCRGMP--RPIFEQVRPALPVLAQLVH------SNDKEVLTDACWALYFLSNGKND-----K------  303 (559)
Q Consensus       243 ~~~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~l~~~~~~-----~------  303 (559)
                      ++..+++.+|.|++....  ...+....|++..|+..++      ..|...++++...+.|++..-..     .      
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~  468 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN  468 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence            789999999999998552  2233344788888888775      34677889999999999853220     0      


Q ss_pred             --------------------HHH----------------------HHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhc
Q 042204          304 --------------------IQA----------------------VIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       304 --------------------~~~----------------------~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~  340 (559)
                                          .+.                      +....++..-..+|. +.++.+.+.++.+|-|++.
T Consensus       469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence                                000                      011112333222332 3456678889999999998


Q ss_pred             CChH----HHHHH-HhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC------C
Q 042204          341 GDDF----QTQCI-INCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA------E  409 (559)
Q Consensus       341 ~~~~----~~~~~-~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~------~  409 (559)
                      +...    ....+ ....+++.|+++|+.+ +..+.+.++.+|.|++.+  ...+.++-...++.|++.|...      +
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d--~rnk~ligk~a~~~lv~~Lp~~~~~~~~s  625 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD--IRNKELIGKYAIPDLVRCLPGSGPSTSLS  625 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC--chhhhhhhcchHHHHHHhCcCCCCCcCch
Confidence            7642    33334 5779999999999999 999999999999999864  2345666678999999999654      3


Q ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHH
Q 042204          410 INIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILK  468 (559)
Q Consensus       410 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~  468 (559)
                      .++...++..|.|++.. +.+..+.+.+.+.++.|+.+..+. +++..+.+...+..+=.
T Consensus       626 edtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  626 EDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             HHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            68999999999999976 788899999999999999998765 45777777766666443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.75  E-value=1.3e-14  Score=151.68  Aligned_cols=402  Identities=17%  Similarity=0.176  Sum_probs=294.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      ..+++.|...  ...+.++..+..-+..  .+..+    ....+.+..+|+..+ .+....++.+|..+... ...... 
T Consensus         6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~----~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l-   74 (503)
T PF10508_consen    6 NELLEELSSK--AERLEALPELKTELSS--SPFLE----RLPEPVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL-   74 (503)
T ss_pred             HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHH----hchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH-
Confidence            4455555544  3345555555554433  12112    222344888888777 67778888999998873 222222 


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204          182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR  261 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~  261 (559)
                       ..+..+.|...|.++++.+|..+++.+++++.++......+.+.+.++.++..+ .+++..+...|+.+|.+++...+.
T Consensus        75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~  152 (503)
T PF10508_consen   75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG  152 (503)
T ss_pred             -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence             457889999999999999999999999999988877777888899999999999 788999999999999999987644


Q ss_pred             CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 042204          262 PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG  341 (559)
Q Consensus       262 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  341 (559)
                      .......+.++.|..++...++.++..++.++.+++..+++..+.+.+.|+++.++..|.+++.-++..|+.+|..++. 
T Consensus       153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-  231 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-  231 (503)
T ss_pred             HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence            3333345668889999988888999999999999999999999999999999999999999888899999999999999 


Q ss_pred             ChHHHHHHHhCCChHHHHHHhcCCC-ch---h-HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHH
Q 042204          342 DDFQTQCIINCGALPYLLVLLIHSH-KK---S-IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWA  416 (559)
Q Consensus       342 ~~~~~~~~~~~g~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a  416 (559)
                      .+...+.+.+.|+++.|..++.+.. ++   . .--......++++...+..+..... .++..|.+++.+.|...+..|
T Consensus       232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p-~~~~~l~~~~~s~d~~~~~~A  310 (503)
T PF10508_consen  232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYP-AFLERLFSMLESQDPTIREVA  310 (503)
T ss_pred             ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHhCCCChhHHHHH
Confidence            6667788999999999999997652 22   1 1122335667776644544433332 266777788888999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHH-HHc-----CChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHH
Q 042204          417 AWAISNATSGGSHEQIKYL-VRE-----KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLV  490 (559)
Q Consensus       417 ~~aL~nl~~~~~~~~~~~l-~~~-----~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i  490 (559)
                      ..+++.++.  +.+....| ...     .++..+.....+...+++..++.++.+++...+.....    .-.+-....+
T Consensus       311 ~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~  384 (503)
T PF10508_consen  311 FDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN----DILSITESWY  384 (503)
T ss_pred             HHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHH
Confidence            999999986  55665555 332     24556666667788899999999999999765431110    0001122223


Q ss_pred             HHhc--cHH-HHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204          491 EEAE--GLE-KIENLQSHENNEIHEKSVKILETYWCG  524 (559)
Q Consensus       491 ~~~g--~l~-~l~~L~~~~~~~v~~~a~~il~~~f~~  524 (559)
                      +..+  -.. .+..+.+.+=+|++-.++.++...+..
T Consensus       385 ~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  385 ESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            3323  233 666777778899999999999876553

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=5.5e-14  Score=135.83  Aligned_cols=387  Identities=17%  Similarity=0.104  Sum_probs=284.7

Q ss_pred             HHHHHHHhc---CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204          101 FAAMVAGVW---SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus       101 l~~lv~~L~---s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.++.+.++   .....+...|+..|.+++..  ...-..+...++|..||+.|+.++ .++-......|..++- ..++
T Consensus       262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eN  337 (791)
T KOG1222|consen  262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDEN  337 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccc
Confidence            344444443   23344555677777787543  455566788899999999999998 7999999999999998 6789


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..+.+.|++..|++++...+++++...+..+.|++.++. .|...+..|.+|.+..++..++.   ...|+..++.++.
T Consensus       338 K~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~  413 (791)
T KOG1222|consen  338 KIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSC  413 (791)
T ss_pred             hHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhcc
Confidence            9999999999999999999999999999999999988865 57777789999999999954432   3446677888887


Q ss_pred             CCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQTI  335 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L  335 (559)
                      +.....+.....+++.+.+.+- ..+.+|-...+..-.|++-+. ...+.+.+-..+..|++.- +..++    .....+
T Consensus       414 dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~----lLmK~v  488 (791)
T KOG1222|consen  414 DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL----LLMKVV  488 (791)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch----HHHHHH
Confidence            7655555666788888877654 445555555544445666433 2345666666677777653 33332    245667


Q ss_pred             HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhHH
Q 042204          336 GHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINIK  413 (559)
Q Consensus       336 ~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~  413 (559)
                      .|++.+.......+++  .+.-|...+....+...-.++..+++|++..+-+..+.+.+.+++|-+-..|+.+  ..+++
T Consensus       489 RniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLv  566 (791)
T KOG1222|consen  489 RNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLV  566 (791)
T ss_pred             HHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhh
Confidence            7888766544444554  4566777776665777888999999999876556556666788999999999865  56788


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC--CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHH
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC--ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVE  491 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~  491 (559)
                      ...+.+++.++.  +......+...++++.|+++|+.  .|.+.+..++-.+..++.....             ..-++.
T Consensus       567 L~~vi~~GT~a~--d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~mik  631 (791)
T KOG1222|consen  567 LQIVIACGTMAR--DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIK  631 (791)
T ss_pred             hHHHHHhhhhhh--hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHh
Confidence            888888888887  34566677788999999999965  5778888888888888866322             345566


Q ss_pred             HhccHHHHHHHhcCCCHHHHHHHHHH
Q 042204          492 EAEGLEKIENLQSHENNEIHEKSVKI  517 (559)
Q Consensus       492 ~~g~l~~l~~L~~~~~~~v~~~a~~i  517 (559)
                      +...-..+..|+++.|.+|++-+...
T Consensus       632 et~~~AylIDLMHDkN~eiRkVCDn~  657 (791)
T KOG1222|consen  632 ETALGAYLIDLMHDKNAEIRKVCDNA  657 (791)
T ss_pred             hccchHHHHHHHhcccHHHHHHHHHH
Confidence            66666788999999999998755433

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.2e-13  Score=133.61  Aligned_cols=389  Identities=15%  Similarity=0.148  Sum_probs=285.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..+..+|++|..++.++.......|.++.-.  .++...+.+.|+|..|++++...+ |+++...+..|.|++. +...+
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence            4678899999988888888888888886333  678889999999999999999999 9999999999999999 77899


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..++..|.+|.|..+|.+...  ...|+..|..++.++ ..+.++.....++.+...+....+..+-...+..--|+|.+
T Consensus       380 ~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            999999999999999987542  234777788887664 45778888888898888876666666666666666788888


Q ss_pred             CCCCcHhhHhchHHHHHHh-hccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHH
Q 042204          259 MPRPIFEQVRPALPVLAQL-VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIG  336 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~  336 (559)
                      +...........+..|.+. +++.|+-+    ...+++++.+.......+++  .+..|...++.. ++.....++.+++
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            7555555555666666653 45555543    34677888776655555654  466777776654 4567888999999


Q ss_pred             HhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHH
Q 042204          337 HIVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN--AEINIK  413 (559)
Q Consensus       337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~  413 (559)
                      |+.-.+-...+.+.+...+|++-..|+..- ..++..+..-+++.++. .......+..+++++.|+++|+.  .|.+..
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV  609 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFV  609 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence            998866667777778899999999997542 23456666666666643 23333445578999999999975  477888


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHH
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVR-EKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE  492 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~  492 (559)
                      ...++.+..+..+  ...++++++ ...-..|+++.+..+.+++.+|-.+|.-+......+.+.-.    .+  ......
T Consensus       610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~----~E--kFrwHN  681 (791)
T KOG1222|consen  610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIA----GE--KFRWHN  681 (791)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHh----hh--hcccch
Confidence            8899999998886  234455554 45567899999999999999999999888877665533200    00  111234


Q ss_pred             hccHHHHHHHhcCCCHH
Q 042204          493 AEGLEKIENLQSHENNE  509 (559)
Q Consensus       493 ~g~l~~l~~L~~~~~~~  509 (559)
                      +..++.+|.-|..+++.
T Consensus       682 sQWLeMVEs~q~ddsEq  698 (791)
T KOG1222|consen  682 SQWLEMVESQQRDDSEQ  698 (791)
T ss_pred             hHHHHHHHHhhccchhh
Confidence            45666777666555544

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.68  E-value=1.8e-14  Score=154.33  Aligned_cols=365  Identities=18%  Similarity=0.184  Sum_probs=278.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCCch
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED--YPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~--~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      .....+..++...|.+   +-++.|..+.+.  .+....+...|.+|.|+++|--++  ..+.+..|-.+|.||....++
T Consensus       197 ets~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD  271 (2195)
T KOG2122|consen  197 ETSNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD  271 (2195)
T ss_pred             hhhhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence            3445677777777754   344566776443  566788899999999999997544  257889999999999998887


Q ss_pred             hHHHHHhCCCHHHHHH----------hhCC-----CCHHHHH---HHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch
Q 042204          177 DTKVVIDHGAVPIFVK----------LLAS-----PNDDIRE---QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE  238 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~----------lL~~-----~~~~v~~---~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~  238 (559)
                      ....-.+..++..|-+          .+..     .+..+..   .|+.+|-.++.+ .++|...-+.|+++.+.+++.-
T Consensus       272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~v  350 (2195)
T KOG2122|consen  272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQV  350 (2195)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHH
Confidence            7654444444444332          2222     1122222   456666666555 6779999999999999998742


Q ss_pred             -----------hhhHhHHHHHHHHHHHhhcCCCCC--cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHH
Q 042204          239 -----------HAKLSMLRTATWTLSNFCRGMPRP--IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ  305 (559)
Q Consensus       239 -----------~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~  305 (559)
                                 .....+++.+..+|.||..++...  ......+++..++..|.+..+++..-...+|.||+-..+....
T Consensus       351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK  430 (2195)
T KOG2122|consen  351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK  430 (2195)
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence                       224578999999999999998332  3334589999999999888888888888999999965554444


Q ss_pred             H-HHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC-CChHHHHHHhcCCC---chhHHHHHHHHHH
Q 042204          306 A-VIEAGVCPRLVEL-LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC-GALPYLLVLLIHSH---KKSIKNHACWTIS  379 (559)
Q Consensus       306 ~-~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~-g~l~~L~~lL~~~~---~~~v~~~a~~~L~  379 (559)
                      . +-+.|-+-.|+.. |...++......|.+|+||+.+..+....+-.- |++..|+.+|....   .-.|.+.|..+|.
T Consensus       431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR  510 (2195)
T KOG2122|consen  431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR  510 (2195)
T ss_pred             HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence            4 5556877777776 444566778889999999998777665555443 99999999996541   3456777888888


Q ss_pred             Hhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHH
Q 042204          380 KITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIV  456 (559)
Q Consensus       380 nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~  456 (559)
                      |+..   ...++.|.+.+++.+..|+..|++...-+..++|.+|.||+.. +++..++|.+.|++..|.+++++++..+.
T Consensus       511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa  589 (2195)
T KOG2122|consen  511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIA  589 (2195)
T ss_pred             HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhh
Confidence            8765   5778888899999999999999999999999999999999987 77888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 042204          457 TVCLKGLENILKVG  470 (559)
Q Consensus       457 ~~~l~~l~~il~~~  470 (559)
                      +-...+|.|++..-
T Consensus       590 ~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  590 MGSAAALRNLLNFR  603 (2195)
T ss_pred             hhHHHHHHHHhcCC
Confidence            99999999999765

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.67  E-value=3.6e-15  Score=142.24  Aligned_cols=327  Identities=15%  Similarity=0.116  Sum_probs=242.2

Q ss_pred             HHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHH
Q 042204          138 VIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-------PNDDIREQAVWALG  210 (559)
Q Consensus       138 ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~  210 (559)
                      -++++++..|.+..++++ .++..+..++|+|++..+.+.|..+.+.|+-..++..|+.       .+.+...-+...|.
T Consensus        83 ~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~  161 (604)
T KOG4500|consen   83 CIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH  161 (604)
T ss_pred             hhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence            356778888888888887 7999999999999999999999999999998888887764       23466677888899


Q ss_pred             HHhCCCchhhhhhhccCCHHHHHHHhc-hhhhHhHHHHHHHHHHHhhcCCC--CCcHhhHhchHHHHHHhhcc-CCHhHH
Q 042204          211 NVAGDSPRCRDLVLSEEALIPLLAQLN-EHAKLSMLRTATWTLSNFCRGMP--RPIFEQVRPALPVLAQLVHS-NDKEVL  286 (559)
Q Consensus       211 nl~~~~~~~r~~i~~~g~l~~Ll~ll~-~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~-~d~~v~  286 (559)
                      |..-++...|..+.+.|+++.|...+- ...+....+.....+.||..-..  -..+.....+...+++++.+ -.+++.
T Consensus       162 Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~  241 (604)
T KOG4500|consen  162 NYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDID  241 (604)
T ss_pred             HhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchh
Confidence            999999999999999999999988773 12233333333333333222110  01111223344445555543 356677


Q ss_pred             HHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCC-------cchhhHHHHHHHhhcCChHHHHHHHhCC-ChHH
Q 042204          287 TDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSS-------SVLSPALQTIGHIVAGDDFQTQCIINCG-ALPY  357 (559)
Q Consensus       287 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~-------~v~~~al~~L~nl~~~~~~~~~~~~~~g-~l~~  357 (559)
                      +-+...+.+.++++.-. -.+.+.|++..+++++.. ...       .....++..+.-+.+|++.. +.+...+ +++.
T Consensus       242 eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~  319 (604)
T KOG4500|consen  242 EMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDF  319 (604)
T ss_pred             hHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHH
Confidence            77888888888665533 357788999999988876 221       12334555555666776654 3344444 8999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-----CChhHHHHHHHHHHHHhcCCCHHHH
Q 042204          358 LLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-----AEINIKNWAAWAISNATSGGSHEQI  432 (559)
Q Consensus       358 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~  432 (559)
                      +.+++.++ +....-.+..+++|+++. ++.+.++++.+++..|+++|..     ++.+++..++.||.|+...  ..+.
T Consensus       320 ~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP--v~nk  395 (604)
T KOG4500|consen  320 LESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP--VSNK  395 (604)
T ss_pred             HHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc--CCch
Confidence            99999999 999999999999999765 5667788899999999999964     4678999999999999873  3566


Q ss_pred             HHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204          433 KYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE  471 (559)
Q Consensus       433 ~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~  471 (559)
                      ..+...|+.+.+...++...|.+...-+..+..+....+
T Consensus       396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence            678899999999999999999999999988887765443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.8e-13  Score=126.80  Aligned_cols=317  Identities=16%  Similarity=0.186  Sum_probs=246.3

Q ss_pred             hcCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhC
Q 042204          140 QSGVVPRFVEFL---MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAG  214 (559)
Q Consensus       140 ~~g~v~~Lv~lL---~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~  214 (559)
                      ..|..+.++..+   .+++ ..+...++.+|..+..+.|+    +.+..++..++.+|..  ++.++....+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            345555554433   3444 67888899999888887665    4567788999998864  677888878888888887


Q ss_pred             CCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC-c---------HhhHhchHHHHHHhhcc-CCH
Q 042204          215 DSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP-I---------FEQVRPALPVLAQLVHS-NDK  283 (559)
Q Consensus       215 ~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~-~---------~~~~~~~l~~L~~lL~~-~d~  283 (559)
                      ....+|+.+.+.++++-+...|.......+.+.++|++.-|...+..+ .         ...-.+++..|++.++. -||
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            778889999999998888878866666679999999999998776321 1         11224567888888874 479


Q ss_pred             hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC-Ccch---hhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204          284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS-SSVL---SPALQTIGHIVAGDDFQTQCIINCGALPYLL  359 (559)
Q Consensus       284 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~---~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~  359 (559)
                      .++..++.+|..|+- .++..+.+.+.|.+..|++++.+.+ ...+   ..++..|..++. ++.....+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            999999999999994 4567788999999999999998843 3333   567888888775 556777899999999999


Q ss_pred             HHh-cCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 042204          360 VLL-IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINIKNWAAWAISNATSGGSHEQIKYLV  436 (559)
Q Consensus       360 ~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~  436 (559)
                      .++ ++..+|.|..+++.+++-++...|++-...++.|+-...++.++..  ...+|++|+|+|.|++.. +.++...++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence            987 4444899999999999999999999999999999999999988754  457999999999999987 456666666


Q ss_pred             HcCChHHHHhcCCCCChHHHHHHHHHHHH
Q 042204          437 REKCIKPLCDLLPCANPTIVTVCLKGLEN  465 (559)
Q Consensus       437 ~~~~l~~L~~lL~~~d~~v~~~~l~~l~~  465 (559)
                      ..| ++.|+..-....+.....+-.+|..
T Consensus       414 ~~G-iE~Li~~A~~~h~tce~~akaALRD  441 (461)
T KOG4199|consen  414 ANG-IEKLIRTAKANHETCEAAAKAALRD  441 (461)
T ss_pred             hcc-HHHHHHHHHhcCccHHHHHHHHHHh
Confidence            654 7777777767676666666666654

>PRK09687 putative lyase; Provisional

Probab=99.67  E-value=8.4e-15  Score=140.58  Aligned_cols=255  Identities=13%  Similarity=0.114  Sum_probs=202.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL  222 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  222 (559)
                      -++.|..+|.+.+ ..+|..|+++|..+..           ..+++.+..++.++++.+|..++|+|+.+-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4678899999888 8999999999998865           23677888899999999999999999998432211    


Q ss_pred             hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh
Q 042204          223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND  302 (559)
Q Consensus       223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~  302 (559)
                        ....++.|..++.++++..++..++.+|.+++...+..    ...+++.+...+.++++.|+..++++|+.+..  + 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11246677777668888999999999999997654222    12355667777888899999999999987652  1 


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204          303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT  382 (559)
Q Consensus       303 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  382 (559)
                              ..++.|+.+|.++++.|+..|+.+||.+...++         .+++.|+.+|.+. +..||..|+|+|+.+ 
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~-  219 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR-  219 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc-
Confidence                    257999999999999999999999999944333         3457799999988 999999999999987 


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHHHHHHH
Q 042204          383 AGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIVTVCLK  461 (559)
Q Consensus       383 ~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~  461 (559)
                       +++.         .+|.|++.|.+++  ++..|+.+|+++-.   ++         .++.|..+++ .+|+.++..+.+
T Consensus       220 -~~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~~  275 (280)
T PRK09687        220 -KDKR---------VLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAID  275 (280)
T ss_pred             -CChh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHHH
Confidence             3343         7889999998866  67788889888754   22         5888888886 789999999998


Q ss_pred             HHHH
Q 042204          462 GLEN  465 (559)
Q Consensus       462 ~l~~  465 (559)
                      ++..
T Consensus       276 a~~~  279 (280)
T PRK09687        276 KLKR  279 (280)
T ss_pred             HHhc
Confidence            8764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=3.8e-14  Score=131.30  Aligned_cols=310  Identities=13%  Similarity=0.124  Sum_probs=248.4

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCH
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASKTSEDTKVVIDHGAV  187 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i  187 (559)
                      .+++....++++..+..+....     ..+.+..+...++.+|... ++.++-...+.++..-+..+..+|+.+++.+++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            4567777788888887765432     2345667888888888643 226888889999999998899999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHHHhCCCc---------hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          188 PIFVKLLAS-PNDDIREQAVWALGNVAGDSP---------RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       188 ~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +.+.+.|.. ....+.+.+.|++.-+..++.         .....+...|++..|+..+.-..++.+...++.+|..|+-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999987765 444677779999999986553         2345677778899999998766789999999999999987


Q ss_pred             CCCCCcHhhHhchHHHHHHhhcc-CCHh---HHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHS-NDKE---VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLSPA  331 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~-~d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~a  331 (559)
                      ...........|++..++.++.+ ++..   ....+|..|+.|+ ++++....+++.|+.+.++.++..  +++.|...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            65444445568999999999986 3444   4467888888888 555567899999999999988653  578899999


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCCh
Q 042204          332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI  410 (559)
Q Consensus       332 l~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~  410 (559)
                      +.+++-++-..++....+++.|+-...++.++ +|....+++.|||.+.|++..+.++...++.. +++.|+..-...++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence            99999999888888889999999999999885 45467899999999999999888888888776 68889998888888


Q ss_pred             hHHHHHHHHHHHHhc
Q 042204          411 NIKNWAAWAISNATS  425 (559)
Q Consensus       411 ~v~~~a~~aL~nl~~  425 (559)
                      .....|-.||..+-.
T Consensus       430 tce~~akaALRDLGc  444 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGC  444 (461)
T ss_pred             cHHHHHHHHHHhcCc
Confidence            888888888887754

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.2e-14  Score=145.51  Aligned_cols=358  Identities=16%  Similarity=0.212  Sum_probs=231.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH-h---cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI-Q---SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT  174 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~---~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~  174 (559)
                      +.+|.|.+.|.+.+...+.-|..+|.++.... .+..+.-. .   .-.+|+++++.++++ |.+|..|+.|+..+....
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence            47899999999999888888999999874331 11111100 0   126899999999998 999999999998877633


Q ss_pred             chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhc-cCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204          175 SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLS-EEALIPLLAQLNEHAKLSMLRTATWTLS  253 (559)
Q Consensus       175 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-~g~l~~Ll~ll~~~~~~~~~~~a~~~L~  253 (559)
                      ++.-..-+ ...+..+..+-.+++++||.+.+.+|..+....+.  ..+.. .++++.++... ++.+.++.-.||....
T Consensus       206 ~qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFwl  281 (885)
T KOG2023|consen  206 TQALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWL  281 (885)
T ss_pred             cHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHH
Confidence            22211111 23566666677789999999999999999765443  11111 23455666555 6778889999999999


Q ss_pred             HhhcCCCC--CcHhhHhchHHHHHHhhccCCHhH--HH------------------------------------------
Q 042204          254 NFCRGMPR--PIFEQVRPALPVLAQLVHSNDKEV--LT------------------------------------------  287 (559)
Q Consensus       254 nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v--~~------------------------------------------  287 (559)
                      .++...-.  .-......++|.|+.-+...+.++  ..                                          
T Consensus       282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D  361 (885)
T KOG2023|consen  282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD  361 (885)
T ss_pred             HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence            99987611  112234567777665432211100  00                                          


Q ss_pred             ----HHHHHHHHhccCChhHHHHHHHhC----cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC--CChHH
Q 042204          288 ----DACWALYFLSNGKNDKIQAVIEAG----VCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC--GALPY  357 (559)
Q Consensus       288 ----~a~~~L~~l~~~~~~~~~~~~~~g----~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--g~l~~  357 (559)
                          ..-|-|+..+...-+....+....    ++|.|-+.|.++++.+++.+..++|.|+.|.-..   +..+  .++|.
T Consensus       362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~  438 (885)
T KOG2023|consen  362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVPHLPELIPF  438 (885)
T ss_pred             cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---cccchHHHHHH
Confidence                001222222211111111222223    4555666677889999999999999999876532   2222  46899


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHH
Q 042204          358 LLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYL  435 (559)
Q Consensus       358 L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  435 (559)
                      |+.+|.+. .+-||.-+||+|+..+..  ..+ .+..... ++..|++.+-+++.+||+.||.|+..+-..+..+.+.++
T Consensus       439 l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l  515 (885)
T KOG2023|consen  439 LLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL  515 (885)
T ss_pred             HHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            99999998 999999999999998751  111 1122211 455666677788999999999999999988777777765


Q ss_pred             HHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          436 VREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       436 ~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      -.  ++..|+..+..-..+-.....+++..+.+.-
T Consensus       516 ~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv  548 (885)
T KOG2023|consen  516 EY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV  548 (885)
T ss_pred             HH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence            43  5666666664433333445566777766553

>PRK09687 putative lyase; Provisional

Probab=99.63  E-value=1.1e-13  Score=132.99  Aligned_cols=254  Identities=15%  Similarity=0.120  Sum_probs=199.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.|...|.+.+..++..+++.|..+-.            ..+++.+..++++++ +.+|..|+|+|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            46788999999999999999999988522            236788888888888 99999999999998762211   


Q ss_pred             HHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          180 VVIDHGAVPIFVKL-LASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       180 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                         ...+++.|..+ ++++++.|+..|+.+|++++...+..     ...++..+...+ .+.+..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               12356788876 67899999999999999996433211     111344455555 56688999999999976542 


Q ss_pred             CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                               ...++.|+.++.++++.|+..|+.+|+.+...++         .+++.|+..|.+.++.|+..|++.|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3478999999999999999999999999943333         2467899999999999999999999986


Q ss_pred             hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-cCChhHHHHHH
Q 042204          339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ-NAEINIKNWAA  417 (559)
Q Consensus       339 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~~a~  417 (559)
                      -.  .         .+++.|+..|.++ +  ++..|+.+|+++  +++.         .+|.|..++. ++|.+++..|.
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~i--g~~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGEL--GDKT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhc--CCHh---------HHHHHHHHHhhCCChhHHHHHH
Confidence            43  2         4689999999877 4  788999999999  4443         7889999996 77999999999


Q ss_pred             HHHHH
Q 042204          418 WAISN  422 (559)
Q Consensus       418 ~aL~n  422 (559)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            98853

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.4e-12  Score=139.32  Aligned_cols=396  Identities=17%  Similarity=0.166  Sum_probs=270.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.++.+++..+|+++..|..|+..|..+...-.+.....+  ..+.+.|.+.+.+++.+ +|..|+++++.++...+..+
T Consensus       118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~  194 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNK  194 (1075)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccch
Confidence            3678888999999999999999999987543212111111  12567788888888855 99999999999988554233


Q ss_pred             HHHHh-CCCHHHHHHhh----CCCCHHHHHHHHHHHHHHhCCCchh-hhhhhccCCHHHHHHHhc-hhhhHhHHHHHHHH
Q 042204          179 KVVID-HGAVPIFVKLL----ASPNDDIREQAVWALGNVAGDSPRC-RDLVLSEEALIPLLAQLN-EHAKLSMLRTATWT  251 (559)
Q Consensus       179 ~~i~~-~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~l~~Ll~ll~-~~~~~~~~~~a~~~  251 (559)
                      ...-. ...+|.++..+    ...+.+....++.+|..++...|.+ +..+.+  ++...+.... +.-+..++..|+.+
T Consensus       195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~  272 (1075)
T KOG2171|consen  195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEF  272 (1075)
T ss_pred             HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHH
Confidence            22221 23566666655    4467777888999999998777663 222211  3333344442 23467888999999


Q ss_pred             HHHhhcCCCCC---cHhhHhchHHHHHHhhccC--C--------------HhHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 042204          252 LSNFCRGMPRP---IFEQVRPALPVLAQLVHSN--D--------------KEVLTDACWALYFLSNGKNDKIQAVIEAGV  312 (559)
Q Consensus       252 L~nL~~~~~~~---~~~~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  312 (559)
                      +..+++..|..   .......+++.++.++...  |              ..--..|..+|-.++.+-+..   .+-.-+
T Consensus       273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~  349 (1075)
T KOG2171|consen  273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPL  349 (1075)
T ss_pred             HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHH
Confidence            99988874321   1223456667766665311  1              112344556666665443311   111225


Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 042204          313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV  392 (559)
Q Consensus       313 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  392 (559)
                      ++.+-.++.++++.-|..++.+|+.++.|........++ .+++..+..|+++ +|.||..||.+++.++..-...++.-
T Consensus       350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence            677788899999999999999999999999877665554 6888888999999 99999999999999988655666666


Q ss_pred             HHcCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH-HHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          393 IDAGLIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIK-PLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       393 i~~~~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      ...-+.+.|+..+.+. +++++..|+.++.|++....++.+..... +++. .|..++.+..+.+++.+..+|..+....
T Consensus       428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA  506 (1075)
T KOG2171|consen  428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA  506 (1075)
T ss_pred             HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            6666888999998775 67999999999999999877666554222 3555 4444567788999999999999998776


Q ss_pred             hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCC-HHHHHHHHHHHH
Q 042204          471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHEN-NEIHEKSVKILE  519 (559)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~-~~v~~~a~~il~  519 (559)
                      +..         ..+|...+.     +.|.+...+.+ .+.+....+.++
T Consensus       507 ~~~---------F~pY~d~~M-----p~L~~~L~n~~~~d~r~LrgktmE  542 (1075)
T KOG2171|consen  507 QEK---------FIPYFDRLM-----PLLKNFLQNADDKDLRELRGKTME  542 (1075)
T ss_pred             hhh---------hHhHHHHHH-----HHHHHHHhCCCchhhHHHHhhHHH
Confidence            542         334555553     55555544433 555554444443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.59  E-value=1.7e-13  Score=147.04  Aligned_cols=326  Identities=18%  Similarity=0.166  Sum_probs=246.4

Q ss_pred             HHHHHHHHHHhcCC---CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHH----------HhhcC------CCCHH
Q 042204           98 LEIFAAMVAGVWSD---DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFV----------EFLMR------EDYPQ  158 (559)
Q Consensus        98 ~~~l~~lv~~L~s~---~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv----------~lL~~------~~~~~  158 (559)
                      .+-+|.+++.|...   +.+.+..|-.+|.+++..+ .+...-=.+..+++.|-          ..++.      +....
T Consensus       234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~  312 (2195)
T KOG2122|consen  234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDE  312 (2195)
T ss_pred             ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence            46788999999854   4567788888999987654 22211111222333332          12221      11123


Q ss_pred             HHH-HHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC------------CCHHHHHHHHHHHHHHhCCCchhh-hhhh
Q 042204          159 LQY-EAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS------------PNDDIREQAVWALGNVAGDSPRCR-DLVL  224 (559)
Q Consensus       159 ~~~-~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~r-~~i~  224 (559)
                      -+. .|+.+|-+++. +.+.|..+.+.|++..+-+|+.-            ....+|..+..+|.||...+...+ .++.
T Consensus       313 H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs  391 (2195)
T KOG2122|consen  313 HQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS  391 (2195)
T ss_pred             hhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            444 67778888888 89999999999999999887742            245789999999999996554444 4555


Q ss_pred             ccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH--hchHHHHHH-hhccCCHhHHHHHHHHHHHhccCCh
Q 042204          225 SEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV--RPALPVLAQ-LVHSNDKEVLTDACWALYFLSNGKN  301 (559)
Q Consensus       225 ~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~--~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~~~~  301 (559)
                      ..|++..++..| .....++......+|.||+-..........  .|-+-.|+. .++...+..+..++.+|+||+.+..
T Consensus       392 ~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  392 QRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence            678999999999 455557888889999999977643333333  344444544 3566777889999999999998777


Q ss_pred             hHHHHHHHh-CcHHHHHHhhCCC----CCcchhhHHHHHHHhhc---CChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 042204          302 DKIQAVIEA-GVCPRLVELLGHR----SSSVLSPALQTIGHIVA---GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNH  373 (559)
Q Consensus       302 ~~~~~~~~~-g~l~~L~~lL~~~----~~~v~~~al~~L~nl~~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~  373 (559)
                      ++...+... |.+..|+.+|...    ...+.+.+-.+|.|.+.   ..+.+.+.+.+++++..|++.|++. +..+...
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSN  549 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSN  549 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeec
Confidence            776666664 8999999999864    34578888788777654   3455777888999999999999999 9999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204          374 ACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       374 a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~  427 (559)
                      +|.+|.||.+.+++..+.+++.|.++.|.+++.+.+..+..-++.+|.|+...-
T Consensus       550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999998753

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.57  E-value=2.7e-12  Score=122.90  Aligned_cols=403  Identities=11%  Similarity=0.061  Sum_probs=288.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHhc
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR------EDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~------~~~~~~~~~a~~~L~nl~~  172 (559)
                      +.++.+.+...|+|.++..+..++|.++.. .+++.+..+.+.|+-..++..|+.      +.+.+.-..+...|.|..-
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCy-dn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICY-DNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhc-cCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            577888888889999999999999999744 558999999999997878777764      1224666777788999999


Q ss_pred             CCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhhhHhHHHHHH
Q 042204          173 KTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT  249 (559)
Q Consensus       173 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~  249 (559)
                      ++.+.+..+++.|+++.|...+.-  .+....+.+....+|+..-- ....+...+......+++++....+++..+.+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999988753  67777788887777776422 223345556667778888887667778888888


Q ss_pred             HHHHHhhcCCCCCcHhhHhchHHHHHHhhcc-CC-------HhHHHHHHHHHHHhccCChhHHHHHHHhC-cHHHHHHhh
Q 042204          250 WTLSNFCRGMPRPIFEQVRPALPVLAQLVHS-ND-------KEVLTDACWALYFLSNGKNDKIQAVIEAG-VCPRLVELL  320 (559)
Q Consensus       250 ~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~l~~L~~lL  320 (559)
                      ..|...+.++...-.....|.+..+..+++. .+       ......++....-+..+++. .+.+...+ +++.+...+
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence            8888888876444444556777888887764 22       22334455555555555554 45666666 899999999


Q ss_pred             CCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC----CchhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 042204          321 GHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS----HKKSIKNHACWTISKITAGNREQIQAVIDAG  396 (559)
Q Consensus       321 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~  396 (559)
                      .+++...+..+.-+|||+++.++..+ .+++.+++..|+++|...    .+..++..++.+|.|+.-. ..+...++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence            99999999999999999999776554 577889999999999541    1567788899999999753 33456788999


Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhcCCCCChH-HHHHHHHHHHHHHHhhhhhc
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR-EKCIKPLCDLLPCANPT-IVTVCLKGLENILKVGEAEK  474 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~-v~~~~l~~l~~il~~~~~~~  474 (559)
                      +.+.++..++...|.++..-...+.-+... -+.....+.+ ...++.|++--+++|-. +.-...+.+.-+++.+-.  
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~--  479 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY--  479 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh--
Confidence            999999999999888888877777655543 2222223332 23455666655666643 555555555555544221  


Q ss_pred             ccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 042204          475 NMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI  517 (559)
Q Consensus       475 ~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~i  517 (559)
                               ....-.+-+.||++.........+-..+..|.-.
T Consensus       480 ---------kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVa  513 (604)
T KOG4500|consen  480 ---------KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVA  513 (604)
T ss_pred             ---------hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHH
Confidence                     1134445667777777777666666666555433

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.57  E-value=1.4e-12  Score=146.04  Aligned_cols=276  Identities=16%  Similarity=0.167  Sum_probs=219.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..++.|++.|.++++.++..|+..|..+-.            .+.++.|+..|++++ +.+|..|+.+|..+....    
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence            467899999999999999999999998632            236899999998888 899999999999885421    


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                            ...+.|...|.++++.+|..|+.+|+.+...            ....++..| .+.+..++..++.+|..+-. 
T Consensus       684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                  1236788889999999999999999987422            123466666 78888999999999987621 


Q ss_pred             CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                                  .+.|..++.++++.|+..++.+|+.+.....         ..++.|..++.++++.+|..|+.+|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        1346678899999999999999999874322         2367888999999999999999999988


Q ss_pred             hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204          339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW  418 (559)
Q Consensus       339 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~  418 (559)
                      ....          .+.+.+...|.++ ++.||..|+++|+.+..  ++         .++.|+.+|.+++..||..|++
T Consensus       803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHH
Confidence            5421          1235678889888 99999999999988732  22         5688999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHH
Q 042204          419 AISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN  465 (559)
Q Consensus       419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~  465 (559)
                      +|..+.  +++.         ..+.|...+++.|+.|+..+..+|..
T Consensus       861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999962  2333         35667788899999999999998863

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.57  E-value=5.3e-13  Score=125.18  Aligned_cols=238  Identities=16%  Similarity=0.149  Sum_probs=185.1

Q ss_pred             hchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH
Q 042204          268 RPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT  346 (559)
Q Consensus       268 ~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  346 (559)
                      .+-++.|+.+|. +.|+.++..++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|++++.|++...+.+.
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~   89 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE   89 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence            556788899998 568999999999999988544 455778888999999999999999999999999999998765443


Q ss_pred             HHHHhCCChHHHHHHh-cCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204          347 QCIINCGALPYLLVLL-IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       347 ~~~~~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~  425 (559)
                        .++. .++.+...+ .++-+..++..+..+|.|++.. .+. +.++. +.++.++.+|..++..+|..++.+|.|++.
T Consensus        90 --~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   90 --QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             --HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence              2232 355555543 3333678999999999999754 222 34442 379999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHhhhhhccccc-ccCcchHHHHHHHHhc-cHHHHHHH
Q 042204          426 GGSHEQIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKVGEAEKNMDT-AIGDVNQYAQLVEEAE-GLEKIENL  502 (559)
Q Consensus       426 ~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~~~~~~~~~~-~~~~~~~~~~~i~~~g-~l~~l~~L  502 (559)
                        ++...+.++..+++..++.+++.. +.++...++..+.||-..-........ ...........+.+.+ .-++|..|
T Consensus       164 --np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l  241 (254)
T PF04826_consen  164 --NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQAL  241 (254)
T ss_pred             --CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHH
Confidence              678899999999999999999875 678899999999998654333211110 0113445556777776 77899999


Q ss_pred             hcCCCHHHHHHH
Q 042204          503 QSHENNEIHEKS  514 (559)
Q Consensus       503 ~~~~~~~v~~~a  514 (559)
                      ..|++++|+++.
T Consensus       242 ~~h~d~ev~~~v  253 (254)
T PF04826_consen  242 ANHPDPEVKEQV  253 (254)
T ss_pred             HcCCCHHHhhhc
Confidence            999999999874

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=9.5e-12  Score=133.12  Aligned_cols=394  Identities=18%  Similarity=0.196  Sum_probs=270.6

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204          100 IFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus       100 ~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .++.|...++ +.|++.+..|+..+|+++.+. -+.+..=.+..+-..++..+.+...+.+|..-+.++..|+...-.. 
T Consensus        37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-  114 (1075)
T KOG2171|consen   37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-  114 (1075)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence            4566777666 678999999999999998762 2222222333455566666666555899999999999999843222 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHh
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL  255 (559)
                      .   =.++++.|.+..+++++..|+.|+..|.++...-...     ..+.+..+..++.   .+.+..++..++.++..+
T Consensus       115 ~---WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~  186 (1075)
T KOG2171|consen  115 K---WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAF  186 (1075)
T ss_pred             c---hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            1   1256888999999999999999999999997543321     1223344444443   334444888899998888


Q ss_pred             hcCCC--CCcHhhHhchHHHHHH----hhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcc
Q 042204          256 CRGMP--RPIFEQVRPALPVLAQ----LVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSV  327 (559)
Q Consensus       256 ~~~~~--~~~~~~~~~~l~~L~~----lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v  327 (559)
                      +...+  ..........+|.++.    .+..+|......++.+|..+....+......+.. ++.....+..+.  ++.+
T Consensus       187 ~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~  265 (1075)
T KOG2171|consen  187 AEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSI  265 (1075)
T ss_pred             HHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHH
Confidence            76653  2223334555665544    4556777788888888888887766555443332 344444444432  3445


Q ss_pred             hhhHHHHHHHhhcCChHHH---------------------------------------------HHHH-----hCC----
Q 042204          328 LSPALQTIGHIVAGDDFQT---------------------------------------------QCII-----NCG----  353 (559)
Q Consensus       328 ~~~al~~L~nl~~~~~~~~---------------------------------------------~~~~-----~~g----  353 (559)
                      |..|+.+|..++...+...                                             ...+     ..|    
T Consensus       266 R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v  345 (1075)
T KOG2171|consen  266 RHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV  345 (1075)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe
Confidence            6666655555544311100                                             0011     011    


Q ss_pred             ---ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHH
Q 042204          354 ---ALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHE  430 (559)
Q Consensus       354 ---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~  430 (559)
                         +++.+-.+|.++ +..-|+.|..+|+-++.|.++.+...++. +++.+++.|.+++++||-.|+.|++.++..-.++
T Consensus       346 ~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~  423 (1075)
T KOG2171|consen  346 LPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE  423 (1075)
T ss_pred             hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence               255566677888 89999999999999999999988887765 9999999999999999999999999999976665


Q ss_pred             HHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHH
Q 042204          431 QIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNE  509 (559)
Q Consensus       431 ~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~  509 (559)
                      ..++ ....+++.|+..+++. ++++...+..++-+++....+.        ...+|...+.+.    ++..|.+++.+.
T Consensus       424 iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~--------~l~pYLd~lm~~----~l~~L~~~~~~~  490 (1075)
T KOG2171|consen  424 IQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS--------ILEPYLDGLMEK----KLLLLLQSSKPY  490 (1075)
T ss_pred             HHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHHHH----HHHHHhcCCchh
Confidence            5554 4556788899998775 5699999999999988765543        234566555432    777888899999


Q ss_pred             HHHHHHHHHH
Q 042204          510 IHEKSVKILE  519 (559)
Q Consensus       510 v~~~a~~il~  519 (559)
                      |++.+...|-
T Consensus       491 v~e~vvtaIa  500 (1075)
T KOG2171|consen  491 VQEQAVTAIA  500 (1075)
T ss_pred             HHHHHHHHHH
Confidence            9988776664

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.56  E-value=4.9e-12  Score=127.47  Aligned_cols=406  Identities=15%  Similarity=0.083  Sum_probs=274.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      .++..+...+++....|..-..+++.+. +++...+++.|.+|.++.+++..+ .++++.+.+-++...+.+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            3455666778888888998999987764 666668999999999999987644 26788888888899999999999999


Q ss_pred             HhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhc---cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          182 IDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLS---EEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~---~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      .+.+.++.|+++|.+++ ..+++.++.++.++...++. ++....   ..++..+..++ ........+.-+...+++|.
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~-q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~  169 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY-QDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS  169 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc-cccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence            99999999999999988 88999999999999876643 222211   11233333333 22333344445555666665


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHH---HhccCChhHHHH----HHHhCcHH--HHHHhhCCCCCcch
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALY---FLSNGKNDKIQA----VIEAGVCP--RLVELLGHRSSSVL  328 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~l~~~~~~~~~~----~~~~g~l~--~L~~lL~~~~~~v~  328 (559)
                      .........-.++.+.+.-++.......+..|+.+++   .+..+++.....    ..+.|+.+  .+.+++++++...+
T Consensus       170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~  249 (678)
T KOG1293|consen  170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER  249 (678)
T ss_pred             cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence            5433333334677777777777778889999999999   776666544333    44557776  45566777777777


Q ss_pred             hhHHHHHHHhhcCChH-----------------HHHH----------------------------------HHhCCChHH
Q 042204          329 SPALQTIGHIVAGDDF-----------------QTQC----------------------------------IINCGALPY  357 (559)
Q Consensus       329 ~~al~~L~nl~~~~~~-----------------~~~~----------------------------------~~~~g~l~~  357 (559)
                      ..++.++.++...+..                 ..+.                                  ..+...++.
T Consensus       250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~  329 (678)
T KOG1293|consen  250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT  329 (678)
T ss_pred             HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence            7777777777654400                 0000                                  000111111


Q ss_pred             HHHHhcCC---------------------------------------------------CchhHHHHHHHHHHHhhcCCH
Q 042204          358 LLVLLIHS---------------------------------------------------HKKSIKNHACWTISKITAGNR  386 (559)
Q Consensus       358 L~~lL~~~---------------------------------------------------~~~~v~~~a~~~L~nl~~~~~  386 (559)
                      +..++...                                                   .+...+..||..+-+++..-.
T Consensus       330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~  409 (678)
T KOG1293|consen  330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS  409 (678)
T ss_pred             HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence            11111100                                                   022333334444444432211


Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHH
Q 042204          387 EQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI  466 (559)
Q Consensus       387 ~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~i  466 (559)
                      .....+-+..+..+|+.++..++..++..+..+|+|++..-+ .....++..|+++.+.+++.+.++.++..++|+|.++
T Consensus       410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l  488 (678)
T KOG1293|consen  410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL  488 (678)
T ss_pred             HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            111112245689999999999999999999999999987533 4456778999999999999999999999999999998


Q ss_pred             HHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204          467 LKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG  524 (559)
Q Consensus       467 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~  524 (559)
                      +-..+..            ....+..-=+...|..+.++++..|++.+.+++.++...
T Consensus       489 ~f~~de~------------~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  489 MFNCDEE------------EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HhcchHH------------HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            7443321            222222222357888999999999999999999987655

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.52  E-value=9.3e-13  Score=123.55  Aligned_cols=196  Identities=19%  Similarity=0.229  Sum_probs=162.8

Q ss_pred             HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch
Q 042204          139 IQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR  218 (559)
Q Consensus       139 i~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  218 (559)
                      .+.+-++.|+.+|+...+|.+++.|..++++.+. .+..+..+.+.|+++.+..+|.++++.+++.|+++|.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            4566789999999977669999999999999887 789999999999999999999999999999999999999877554


Q ss_pred             hhhhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204          219 CRDLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS  297 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  297 (559)
                       +..+..  .+..++..+... -+..++..++.+|.||+.....  ...+...+|.++.+|..++..++..++++|.||+
T Consensus        88 -~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 -QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             -HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence             444432  466666655333 3678889999999999866422  3445678999999999999999999999999999


Q ss_pred             cCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcC
Q 042204          298 NGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIGHIVAG  341 (559)
Q Consensus       298 ~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~  341 (559)
                      .. +...+.++.++++..++.++... +..+...++..+.||..+
T Consensus       163 ~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 EN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            65 44667889999999999999886 567888999999999653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.52  E-value=3.9e-12  Score=142.55  Aligned_cols=277  Identities=15%  Similarity=0.158  Sum_probs=218.7

Q ss_pred             hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh
Q 042204          140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC  219 (559)
Q Consensus       140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  219 (559)
                      ....++.|++.|.+++ +.+|..|+.+|+.+..           .++++.|+..|+++++.+|..|+.+|..+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence            3456789999999988 9999999999998764           2478999999999999999999999998853222  


Q ss_pred             hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204          220 RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG  299 (559)
Q Consensus       220 r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  299 (559)
                              ..+.+...| .+.++.++..++.+|..+....           ...++..|.++|+.++..|+++|+.+-. 
T Consensus       685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence                    124566666 5678899999999888865321           2346778899999999999999997631 


Q ss_pred             ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204          300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS  379 (559)
Q Consensus       300 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  379 (559)
                                   .+.|..++.++++.||..++.+|+.+.....         ..++.|..+++++ ++.+|..|+.+|+
T Consensus       744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg  800 (897)
T PRK13800        744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA  800 (897)
T ss_pred             -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                         1345678899999999999999998865322         2367888999988 9999999999999


Q ss_pred             HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204          380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC  459 (559)
Q Consensus       380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~  459 (559)
                      ++... +.         .++.++..|.++++.||..|+++|..+...            ..++.|..+|+++++.|+..+
T Consensus       801 ~~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        801 ELGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             hcCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHH
Confidence            88432 11         335678889999999999999999876431            246889999999999999999


Q ss_pred             HHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 042204          460 LKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILE  519 (559)
Q Consensus       460 l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~  519 (559)
                      ..+|..+- ..                      ....+.|....++++.+|+..|...|+
T Consensus       859 ~~aL~~~~-~~----------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        859 VLALTRWP-GD----------------------PAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHhccC-CC----------------------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            99998851 00                      112466778888999999999998886

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.46  E-value=1.3e-12  Score=109.96  Aligned_cols=119  Identities=32%  Similarity=0.567  Sum_probs=110.2

Q ss_pred             HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC
Q 042204          137 EVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDS  216 (559)
Q Consensus       137 ~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  216 (559)
                      .+++.|+++.++++|.+++ +.++..++++|.+++..+++....+++.|+++.++.+|.++++.++..|+|+|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999988 899999999999999988999999999999999999999999999999999999999988


Q ss_pred             chhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          217 PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       217 ~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..+..+...|+++.++..+ .+.+..+++.++|+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888899999999999 55688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=6.1e-12  Score=126.34  Aligned_cols=347  Identities=14%  Similarity=0.146  Sum_probs=229.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204          103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI  182 (559)
Q Consensus       103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  182 (559)
                      ..+..+...++-++-..-..+..+++...-...     ..++|.|.++|.+++ ...++.|..+|.+|+.++++.-+.-+
T Consensus        94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~  167 (885)
T KOG2023|consen   94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDV  167 (885)
T ss_pred             HHHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhc
Confidence            455556555554444444455555554322222     247899999999998 68999999999999997666544322


Q ss_pred             h----CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccC-CHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          183 D----HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEE-ALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       183 ~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g-~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      .    .-.+|.++++.+++++.+|..|+.++..+.-..+..  .....+ ++..+..+- .+.+++++++.|.++..|..
T Consensus       168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Lle  244 (885)
T KOG2023|consen  168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLE  244 (885)
T ss_pred             ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHH
Confidence            1    136899999999999999999999999887554331  222111 233333333 77899999999999999999


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH--hCcHHHHHHhhCCCC-----------
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE--AGVCPRLVELLGHRS-----------  324 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~-----------  324 (559)
                      -.|........++++.++...++.|++|...||.....+++.+. ....+..  ..++|.|+.-+..++           
T Consensus       245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee  323 (885)
T KOG2023|consen  245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE  323 (885)
T ss_pred             hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence            88877777888999999999999999999999999999886652 2122211  135565554432110           


Q ss_pred             ---------------------------------------------CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204          325 ---------------------------------------------SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLL  359 (559)
Q Consensus       325 ---------------------------------------------~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~  359 (559)
                                                                   +.+|...+.+|.-++.--.   +.++. -++|.|-
T Consensus       324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk  399 (885)
T KOG2023|consen  324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLK  399 (885)
T ss_pred             cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHH
Confidence                                                         2233333333332222111   11221 2355556


Q ss_pred             HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHH-HHHHHc
Q 042204          360 VLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI-KYLVRE  438 (559)
Q Consensus       360 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~  438 (559)
                      ..|.+. .-.+|+.+..+++.|+.|.-...-.-+- .++|.|+.+|.+..+-||..+||.|+..+.....+.. .++.. 
T Consensus       400 ~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p-  476 (885)
T KOG2023|consen  400 EHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP-  476 (885)
T ss_pred             HHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH-
Confidence            666676 8889999999999998764332222111 2799999999999999999999999988764211111 22211 


Q ss_pred             CChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204          439 KCIKPLCDLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       439 ~~l~~L~~lL~~~d~~v~~~~l~~l~~il  467 (559)
                       ++..|...+-+.+.+|+++++.++..+-
T Consensus       477 -vL~~ll~~llD~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  477 -VLEGLLRRLLDSNKKVQEAACSAFATLE  504 (885)
T ss_pred             -HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence             4555555556778888888888876654

>PTZ00429 beta-adaptin; Provisional

Probab=99.44  E-value=1.4e-09  Score=116.98  Aligned_cols=338  Identities=12%  Similarity=0.096  Sum_probs=230.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..++.+++.+.+.|.+.+....-.+.++.... ++..  +.   +++.|.+-+++++ |.+|-.|+++|++|-.  ++..
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela--lL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~  138 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--LL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL  138 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--HH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence            46788999999999999998888888875432 2212  11   4778888888888 9999999999998876  3333


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..     +++.+.+.+.+.++.||..|+.++.++...+|+   .+...+.++.|..++ .+.++.+..+|+.+|..++..
T Consensus       139 e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        139 EY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence            32     356778888999999999999999999766654   445567788888877 788999999999999999876


Q ss_pred             CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                      .+. ........+..++..+..-++..+...+.+|......+....     ..++..+...|.+.++.|...|++++.++
T Consensus       210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            543 244446666777777777788888888888866442222221     24678888999999999999999999988


Q ss_pred             hcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH------------------------
Q 042204          339 VAGD-DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI------------------------  393 (559)
Q Consensus       339 ~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li------------------------  393 (559)
                      .... +.....+.. .+-+.++.++ +. ++++|..++..|.-+....+.....-+                        
T Consensus       284 ~~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L  360 (746)
T PTZ00429        284 ASRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL  360 (746)
T ss_pred             cCcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence            7643 222222211 2224455553 33 566666666665555443332221110                        


Q ss_pred             -Hc----CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          394 -DA----GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       394 -~~----~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                       +.    .++..|.....+.|.+++..++.+|+.++..- +...     ..++..|+++++.... ++..++..+.+|++
T Consensus       361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a-----~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilr  433 (746)
T PTZ00429        361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVA-----PDCANLLLQIVDRRPE-LLPQVVTAAKDIVR  433 (746)
T ss_pred             cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHH-----HHHHHHHHHHhcCCch-hHHHHHHHHHHHHH
Confidence             00    13344555555667889999999999998742 2222     2367778888865433 44456777777765


Q ss_pred             hh
Q 042204          469 VG  470 (559)
Q Consensus       469 ~~  470 (559)
                      ..
T Consensus       434 ky  435 (746)
T PTZ00429        434 KY  435 (746)
T ss_pred             HC
Confidence            43

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.43  E-value=5.9e-11  Score=119.83  Aligned_cols=371  Identities=13%  Similarity=0.081  Sum_probs=240.5

Q ss_pred             hHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 042204           97 RLEIFAAMVAGVWSDD--NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT  174 (559)
Q Consensus        97 ~~~~l~~lv~~L~s~~--~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~  174 (559)
                      +.++++.+...++..+  .+.+.+.+..+..+.+++ ......+.+.+.++.+.++|..++...++...++++.++.+.+
T Consensus        49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~  127 (678)
T KOG1293|consen   49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS  127 (678)
T ss_pred             hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence            3578899998888665  355555666666666665 7889999999999999999998885689999999999999854


Q ss_pred             chhHHH--HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204          175 SEDTKV--VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL  252 (559)
Q Consensus       175 ~~~~~~--i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L  252 (559)
                      +.+-..  .....+++.+..++..+.......-+....+.++. +..+....+.|+.+.+.-++ ...+...+..+..++
T Consensus       128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~  205 (678)
T KOG1293|consen  128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAALLCL  205 (678)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence            333222  22234555555555534444444444444444443 34455556666666555444 555667788888888


Q ss_pred             H---HhhcCCCCCcHhhH-----hchHH--HHHHhhccCCHhHHHHHHHHHHHhccCCh---------------------
Q 042204          253 S---NFCRGMPRPIFEQV-----RPALP--VLAQLVHSNDKEVLTDACWALYFLSNGKN---------------------  301 (559)
Q Consensus       253 ~---nL~~~~~~~~~~~~-----~~~l~--~L~~lL~~~d~~v~~~a~~~L~~l~~~~~---------------------  301 (559)
                      +   ++..+.|.......     .++.+  .+..++++.+...+..++.++.++...+.                     
T Consensus       206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q  285 (678)
T KOG1293|consen  206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ  285 (678)
T ss_pred             hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence            8   66666543333222     33444  34455555555555555555544443220                     


Q ss_pred             ------------------------------hHHHHHHHhCcHHHHHHhhC------------------------------
Q 042204          302 ------------------------------DKIQAVIEAGVCPRLVELLG------------------------------  321 (559)
Q Consensus       302 ------------------------------~~~~~~~~~g~l~~L~~lL~------------------------------  321 (559)
                                                    .......+....+.+++++.                              
T Consensus       286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~  365 (678)
T KOG1293|consen  286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL  365 (678)
T ss_pred             HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence                                          00000111112222222221                              


Q ss_pred             ----------------------CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204          322 ----------------------HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS  379 (559)
Q Consensus       322 ----------------------~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  379 (559)
                                            +.+...+..|+-++-+++..-......+-...+..+|++++..+ +..|+..+..+|.
T Consensus       366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~  444 (678)
T KOG1293|consen  366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAIC  444 (678)
T ss_pred             chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHH
Confidence                                  12223344444444444432222211223446788999999888 8899999999999


Q ss_pred             HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204          380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC  459 (559)
Q Consensus       380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~  459 (559)
                      |+.-.-.+....++..|++..+..++.+.++.++..+.|+|.++..+++.+....+...=.-..+..+.+++|+.|++.|
T Consensus       445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~  524 (678)
T KOG1293|consen  445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC  524 (678)
T ss_pred             HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence            99986566678899999999999999999999999999999999998766555555554445667778899999999999


Q ss_pred             HHHHHHHHHhhh
Q 042204          460 LKGLENILKVGE  471 (559)
Q Consensus       460 l~~l~~il~~~~  471 (559)
                      +..+.|+.+..+
T Consensus       525 fqllRNl~c~~~  536 (678)
T KOG1293|consen  525 FQLLRNLTCNSR  536 (678)
T ss_pred             HHHHHHhhcCcH
Confidence            999999987633

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.42  E-value=3.7e-11  Score=128.53  Aligned_cols=326  Identities=18%  Similarity=0.203  Sum_probs=229.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      ..+.+++.+.+.+...+.-+.-.+..+...  ++..-.+    ++..+.+=|.+++ +.++..|+++|++++.  ++...
T Consensus        43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~  113 (526)
T PF01602_consen   43 LFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE  113 (526)
T ss_dssp             THHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence            567888888999999998888888887554  2221221    5677888888888 9999999999999985  55444


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      .     +++.+.+++.++++.||..|+.++..+....|+.   +... .++.+..++ .+.++.++..|+.++..+ +..
T Consensus       114 ~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~  182 (526)
T PF01602_consen  114 P-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN  182 (526)
T ss_dssp             H-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred             H-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence            3     4688899999999999999999999998765552   2222 477888888 778899999999999999 322


Q ss_pred             CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204          260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV  339 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  339 (559)
                      +..........++.|..++...++..+..++..+..++.........   ..+++.+..++.+.++.|...|++++..+.
T Consensus       183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence            11111445666777777778899999999999999998665544321   346778888888888888888888888776


Q ss_pred             cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-cCChhHHHHHHH
Q 042204          340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ-NAEINIKNWAAW  418 (559)
Q Consensus       340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~-~~~~~v~~~a~~  418 (559)
                      ....      .-..+++.|..++.++ ++.+|..++..|..++...+..+.      .....+..+. +++..++..++.
T Consensus       260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~------~~~~~~~~l~~~~d~~Ir~~~l~  326 (526)
T PF01602_consen  260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF------NQSLILFFLLYDDDPSIRKKALD  326 (526)
T ss_dssp             SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG------THHHHHHHHHCSSSHHHHHHHHH
T ss_pred             cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh------hhhhhhheecCCCChhHHHHHHH
Confidence            6433      1125677888888877 888999999988888765433222      1222233444 677888888888


Q ss_pred             HHHHHhcCCCHHHHHHHHHcCChHHHHhcC-CCCChHHHHHHHHHHHHHHHh
Q 042204          419 AISNATSGGSHEQIKYLVREKCIKPLCDLL-PCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-~~~d~~v~~~~l~~l~~il~~  469 (559)
                      .+.+++..   .+...     +++.|...+ +..|++++..+...+..+...
T Consensus       327 lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~  370 (526)
T PF01602_consen  327 LLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEK  370 (526)
T ss_dssp             HHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence            88888753   33333     455566666 344666666666666555433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.42  E-value=3.7e-12  Score=107.06  Aligned_cols=119  Identities=32%  Similarity=0.497  Sum_probs=110.6

Q ss_pred             HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204          306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN  385 (559)
Q Consensus       306 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  385 (559)
                      .+++.|+++.++++|.++++.++..++++|++++...+.....+++.|+++.+..+|.++ ++.++..|+|+|+|++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence            356789999999999999999999999999999998888888889999999999999998 9999999999999999887


Q ss_pred             HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204          386 REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       386 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~  425 (559)
                      +.....+.+.|+++.|++++.+.+.+++..++|+|.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            7778888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.41  E-value=2.7e-10  Score=121.92  Aligned_cols=326  Identities=21%  Similarity=0.186  Sum_probs=237.8

Q ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          102 AAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       102 ~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.+.+.+.  +...+..++..+..+...+ .+ .     .-+.+.+++++.+.+ ...+.-+.-++..+...+++...
T Consensus         7 ~el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~-~-----~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~   78 (526)
T PF01602_consen    7 QELAKILNSFKIDISKKKEALKKLIYLMMLG-YD-I-----SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLI   78 (526)
T ss_dssp             HHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CC-C-----chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHH
Confidence            3455555555  7777888887777665443 21 1     147788999999877 89999999999999997766332


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      .     ++..+.+-|.++++.++..|+.+|++++  .++..+.     .++.+.+.+ .++++.+++.|+.++..+.+..
T Consensus        79 l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~  145 (526)
T PF01602_consen   79 L-----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKD  145 (526)
T ss_dssp             H-----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHC
T ss_pred             H-----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccC
Confidence            2     4678888899999999999999999997  2332222     356677777 6778899999999999999875


Q ss_pred             CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204          260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV  339 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  339 (559)
                      |....  .. .++.+..++.+.|+.++..|+.++..+ ..+++... -.-...+..|.+++...++-.+..+++++..++
T Consensus       146 p~~~~--~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  146 PDLVE--DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             HCCHH--GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             HHHHH--HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence            43211  12 689999999999999999999999999 33332211 112235666777778888889999999999998


Q ss_pred             cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHH
Q 042204          340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWA  419 (559)
Q Consensus       340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~a  419 (559)
                      .........   ..+++.+..++++. ++.|..+++.++..+... +.    +. ..+++.|..++.+.++.++-.++.+
T Consensus       221 ~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~----~~-~~~~~~L~~lL~s~~~nvr~~~L~~  290 (526)
T PF01602_consen  221 PMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE----LL-QKAINPLIKLLSSSDPNVRYIALDS  290 (526)
T ss_dssp             SSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH----HH-HHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             cCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH----HH-HhhHHHHHHHhhcccchhehhHHHH
Confidence            877655421   35678889999888 999999999999988643 33    22 2368889999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          420 ISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       420 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      |..++... +..    +. .....+..+..++|..++..+++.+..+...
T Consensus       291 L~~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  291 LSQLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             HHHHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             HHHhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence            99998863 222    22 1122222333488999999999999998843

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.35  E-value=4.1e-10  Score=112.55  Aligned_cols=350  Identities=15%  Similarity=0.182  Sum_probs=227.8

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC-----CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC
Q 042204          142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDH-----GAVPIFVKLLASPNDDIREQAVWALGNVAGDS  216 (559)
Q Consensus       142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  216 (559)
                      ..+..++.+|+....+++....+..+..+...++.....+.+.     .....++.+|..++.-+...++..|..+...+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            3567777788776667888888888888888777666666654     46778888999999999999999999998655


Q ss_pred             chhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC--CHhHHHHHHHHHH
Q 042204          217 PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN--DKEVLTDACWALY  294 (559)
Q Consensus       217 ~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~  294 (559)
                      +.........-.+..+...+....+...+..++.+|..|.+.++.+......++++.|+.+|+..  +.+++..++-+++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            43211110000223344444333346677778899999999876665554566899999999753  5688889999998


Q ss_pred             HhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCCh------HHHHHHHhCCChHHHHHHhcCC-C
Q 042204          295 FLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDD------FQTQCIINCGALPYLLVLLIHS-H  366 (559)
Q Consensus       295 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~~~~g~l~~L~~lL~~~-~  366 (559)
                      -++...+ ....+...++++.++++++. ..+++..-++.++.|+...+.      .....+++.|+++.+-.+.... .
T Consensus       213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~  291 (429)
T cd00256         213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD  291 (429)
T ss_pred             HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence            8885544 55566677999999999987 457788889999999998541      2334556667766554444322 1


Q ss_pred             chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCC---hhHH-HHHHHHHHHHhcCCCHHHHHHHHHcC--C
Q 042204          367 KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAE---INIK-NWAAWAISNATSGGSHEQIKYLVREK--C  440 (559)
Q Consensus       367 ~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~---~~v~-~~a~~aL~nl~~~~~~~~~~~l~~~~--~  440 (559)
                      |+++....-. |.....   +.++.+   --+..=..-+.++.   ..+. .+.-|          .++...+-+.+  +
T Consensus       292 DedL~edl~~-L~e~L~---~~~k~l---tsfD~Y~~El~sg~L~WSp~H~se~FW----------~EN~~kf~~~~~~l  354 (429)
T cd00256         292 DEDLTDDLKF-LTEELK---NSVQDL---SSFDEYKSELRSGRLHWSPVHKSEKFW----------RENADRLNEKNYEL  354 (429)
T ss_pred             cHHHHHHHHH-HHHHHH---HHHHHc---CCHHHHHHHHhcCCccCCCCCCCchHH----------HHHHHHHHhcchHH
Confidence            4444333221 111111   000000   00000011111110   0000 00111          23444444433  4


Q ss_pred             hHHHHhcC-CCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 042204          441 IKPLCDLL-PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILE  519 (559)
Q Consensus       441 l~~L~~lL-~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~  519 (559)
                      +..|+++| ++.|+.+...|+.-++.+++.-+.             -+..+++.|+-+.+.+|+.|+|++|+..|...++
T Consensus       355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ  421 (429)
T cd00256         355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ  421 (429)
T ss_pred             HHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            78889998 467899999999999998876443             3667889999999999999999999999999998


Q ss_pred             hhc
Q 042204          520 TYW  522 (559)
Q Consensus       520 ~~f  522 (559)
                      ++.
T Consensus       422 klm  424 (429)
T cd00256         422 KLM  424 (429)
T ss_pred             HHH
Confidence            764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.33  E-value=7e-09  Score=111.64  Aligned_cols=294  Identities=14%  Similarity=0.080  Sum_probs=209.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+..+.+.|++.+...+..+++.+..+.... .+..      .+++.+++++.+++ ..++.-..-.|.+++...++..-
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelal  104 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKAL  104 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHH
Confidence            4567788888988888888888776665443 2222      25677888998888 89999999999999886665432


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      .     ++..|.+=+.++++.+|-.|+++|++|...  ..-+.     .+.++.+.+ .+.++-+++.|+.++..+.+..
T Consensus       105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~  171 (746)
T PTZ00429        105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD  171 (746)
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence            2     467888889999999999999999998432  21111     245566666 6788999999999999998765


Q ss_pred             CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204          260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV  339 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  339 (559)
                      |.  .....+.++.|..+|.+.|+.|+.+|+.+|..+....+....  ...+.+..|+..+..-++-.+...+.+|....
T Consensus       172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~  247 (746)
T PTZ00429        172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR  247 (746)
T ss_pred             cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence            42  223356788899999999999999999999999865554332  23455777888887766666777777775543


Q ss_pred             cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204          340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW  418 (559)
Q Consensus       340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~  418 (559)
                      ..++...     ..++..+...|++. ++.|.-+|+.++.++... +++.+..+... +.+.|+.+ .++++++|-.++.
T Consensus       248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pLv~L-~ss~~eiqyvaLr  319 (746)
T PTZ00429        248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVR-VNTALLTL-SRRDAETQYIVCK  319 (746)
T ss_pred             CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHHHHh-hCCCccHHHHHHH
Confidence            3222222     14677888889998 999999999999998753 34444433321 34556655 3456778877777


Q ss_pred             HHHHHhcC
Q 042204          419 AISNATSG  426 (559)
Q Consensus       419 aL~nl~~~  426 (559)
                      .|.-++..
T Consensus       320 ~I~~i~~~  327 (746)
T PTZ00429        320 NIHALLVI  327 (746)
T ss_pred             HHHHHHHH
Confidence            77666553

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.28  E-value=7.8e-09  Score=103.49  Aligned_cols=344  Identities=13%  Similarity=0.107  Sum_probs=227.3

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhc-----CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 042204          100 IFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-----GVVPRFVEFLMREDYPQLQYEAAWALTNIASK  173 (559)
Q Consensus       100 ~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-----g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~  173 (559)
                      ....++..+. ....+.....+..+..++... +.....+.+.     .....++.+|.+++ .-++..|+.+|+.+.+.
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            4455666665 345677777888888887763 3334444443     46677888998887 79999999999999875


Q ss_pred             CchhHHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-hHhHHHHHHHH
Q 042204          174 TSEDTKVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-KLSMLRTATWT  251 (559)
Q Consensus       174 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-~~~~~~~a~~~  251 (559)
                      .+.........-.++.|...+.++ +...+..|+.+|..+... +.+|..+.+.+++++|+.+|.... +.+++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            443222111111334555566553 477788889999998766 457888888889999999996544 67889999999


Q ss_pred             HHHhhcCCCCCcHhhHhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCC------hhHHHHHHHhCcHHHHHHhhCC--
Q 042204          252 LSNFCRGMPRPIFEQVRPALPVLAQLVHS-NDKEVLTDACWALYFLSNGK------NDKIQAVIEAGVCPRLVELLGH--  322 (559)
Q Consensus       252 L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~------~~~~~~~~~~g~l~~L~~lL~~--  322 (559)
                      ++-|+...+........+++|.++.+++. ..+.+..-++.++.|+...+      ......+++.|+.+.+-.+...  
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            99998876433333346899999999975 46889999999999999643      1233456777776655444433  


Q ss_pred             CCCcchhhHHHHHHHhhcCC-------hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 042204          323 RSSSVLSPALQTIGHIVAGD-------DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA  395 (559)
Q Consensus       323 ~~~~v~~~al~~L~nl~~~~-------~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~  395 (559)
                      .++++ ...+..|.......       ++.... +..|-+.+         +|.-+.+..|         .++...+-+.
T Consensus       291 ~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~E-l~sg~L~W---------Sp~H~se~FW---------~EN~~kf~~~  350 (429)
T cd00256         291 DDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSE-LRSGRLHW---------SPVHKSEKFW---------RENADRLNEK  350 (429)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHH-HhcCCccC---------CCCCCCchHH---------HHHHHHHHhc
Confidence            23332 22333333222211       111111 11222211         1111223333         1233333333


Q ss_pred             C--CHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204          396 G--LIGPLINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       396 ~--~i~~Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il  467 (559)
                      +  ++..|+++|. +.|+.+..-||.=|+.++.. -|+....+-+.|+=..+++++.++|++|+..|+.++..++
T Consensus       351 ~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~-~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         351 NYELLKILIHLLETSVDPIILAVACHDIGEYVRH-YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             chHHHHHHHHHHhcCCCcceeehhhhhHHHHHHH-CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            2  5788999995 55788889999999999987 3566666667888899999999999999999999999886

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=6.3e-09  Score=106.82  Aligned_cols=361  Identities=14%  Similarity=0.160  Sum_probs=241.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+|.+-+.++++|+..+..|+-++..++.+. .+....-+-.+++|.++.++.++. -.++..++|+|+.|+.+.++...
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~  442 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAII  442 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhcc
Confidence            4566666899999999999999999988764 444444455678999999999777 78999999999999998775442


Q ss_pred             HH-HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh-----hhhhhccCCHHHHHHHhch------hhhHhHHHH
Q 042204          180 VV-IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC-----RDLVLSEEALIPLLAQLNE------HAKLSMLRT  247 (559)
Q Consensus       180 ~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----r~~i~~~g~l~~Ll~ll~~------~~~~~~~~~  247 (559)
                      .. ...+.++.++.-|. ..|.+...++|++.+++...++.     +..... ...+.++.-|..      ..+..++..
T Consensus       443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A  520 (859)
T KOG1241|consen  443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA  520 (859)
T ss_pred             cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence            22 22344555555544 45789999999999998432211     000111 244555554432      245678888


Q ss_pred             HHHHHHHhhcCCCCCcHhhHhchHHHHHH---------hhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204          248 ATWTLSNFCRGMPRPIFEQVRPALPVLAQ---------LVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAGVCP  314 (559)
Q Consensus       248 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~---------lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~  314 (559)
                      +..+|..+....+......+.+....+..         .+...|    .+++...|.+|..+.......+..+.+ .++.
T Consensus       521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~  599 (859)
T KOG1241|consen  521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG  599 (859)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence            99999999998876666666555555444         222222    356677777777776444333333333 3677


Q ss_pred             HHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204          315 RLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI  393 (559)
Q Consensus       315 ~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li  393 (559)
                      .+++++.+ .+..+.+.|+.+++.++..-..+....+. .+.|.|..-|++..+..|...|...++.++..-.+.+..+.
T Consensus       600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~  678 (859)
T KOG1241|consen  600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC  678 (859)
T ss_pred             HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            78888887 45668889999999988755544333333 57888888886554888999999999999875455555555


Q ss_pred             HcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC----CCCC-------hHHHHHHH
Q 042204          394 DAGLIGPLINLLQNA--EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL----PCAN-------PTIVTVCL  460 (559)
Q Consensus       394 ~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL----~~~d-------~~v~~~~l  460 (559)
                      +. ++..|++.|+++  +..++-.++.+++.++..-..+...|+-.  +++.|.+.-    ...|       .++++.++
T Consensus       679 d~-~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~--vm~llq~as~~~~d~~~~~~~dYvd~LRe~~l  755 (859)
T KOG1241|consen  679 DE-LMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM--VMPLLQQASSVQTDPADDSMVDYVDELREGIL  755 (859)
T ss_pred             HH-HHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHhccCCCCcccHHHHHHHHHHHHH
Confidence            53 888999999887  67888889999998887545555555332  233222222    1111       25677777


Q ss_pred             HHHHHHHHh
Q 042204          461 KGLENILKV  469 (559)
Q Consensus       461 ~~l~~il~~  469 (559)
                      ++..-|+..
T Consensus       756 eay~gi~qg  764 (859)
T KOG1241|consen  756 EAYTGIIQG  764 (859)
T ss_pred             HHHHHHHHH
Confidence            777666643

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=5.7e-09  Score=108.12  Aligned_cols=343  Identities=17%  Similarity=0.175  Sum_probs=245.2

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      ..+|.|+..|+. .+.+++..|++++..|... -++....+++.++||.|++-|..-.+-++.++++.+|-.|+..   .
T Consensus       211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev-lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H  286 (1051)
T KOG0168|consen  211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEV-LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---H  286 (1051)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhh-ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---c
Confidence            357888988885 4689999999999997554 2666888899999999998887766689999999999999984   3


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC  256 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~  256 (559)
                      -.++.++|++...+.+|.--+..+++.|+.+..|+|..-+ +--+.+.+  +++.|..+| +..+.+..++++-++..++
T Consensus       287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence            4678899999999999988888999999999999995322 22234444  577777777 7778888999999999998


Q ss_pred             cCC-CCCcH---hhHhchHHHHHHhhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC---
Q 042204          257 RGM-PRPIF---EQVRPALPVLAQLVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS---  325 (559)
Q Consensus       257 ~~~-~~~~~---~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~---  325 (559)
                      .+. +.+..   ..-.+++....+|+...+    ..+..-.+..++-++.+.+.....+...++...|..+|.+.+.   
T Consensus       364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n  443 (1051)
T KOG0168|consen  364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN  443 (1051)
T ss_pred             HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence            776 32222   222677777788876543    3445667777888888877777778888888888877754211   


Q ss_pred             -c-----chhh------H---------------------------------------------------HHHHHHh----
Q 042204          326 -S-----VLSP------A---------------------------------------------------LQTIGHI----  338 (559)
Q Consensus       326 -~-----v~~~------a---------------------------------------------------l~~L~nl----  338 (559)
                       .     .+.+      .                                                   .+++..+    
T Consensus       444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~  523 (1051)
T KOG0168|consen  444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT  523 (1051)
T ss_pred             cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence             0     0100      0                                                   0111100    


Q ss_pred             ---------hcCC---------hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHH-cCCH
Q 042204          339 ---------VAGD---------DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVID-AGLI  398 (559)
Q Consensus       339 ---------~~~~---------~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~-~~~i  398 (559)
                               -.++         ++..+.++. .++|.|+++..+.-++.||..+..+|..+.. .+.+.++.++. .++-
T Consensus       524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS  602 (1051)
T KOG0168|consen  524 GTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS  602 (1051)
T ss_pred             ccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence                     0000         011111111 4688888888776689999999999999886 67888888885 4566


Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204          399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP  449 (559)
Q Consensus       399 ~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  449 (559)
                      ..+-.+|.+.|..+..-|+...--+...-..-....+...|++..+-+|..
T Consensus       603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            677778888888877777766666665544455677788888887777765

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.14  E-value=1.3e-08  Score=103.94  Aligned_cols=386  Identities=13%  Similarity=0.146  Sum_probs=238.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCC-ch
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQYEAAWALTNIASKT-SE  176 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~~~-~~  176 (559)
                      ..+.+++.-++++.+..+...+....++.+.-...-+++-.+.-.+..++..++.++. ..+......++.|-..+. ..
T Consensus       716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kp  795 (1172)
T KOG0213|consen  716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKP  795 (1172)
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcccc
Confidence            3566777778888877777777777777665333333333333445555555554431 233334444443332210 11


Q ss_pred             hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh--hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD--LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~--~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      ..     ..++...+..|+++++.+|++|+..++.++..-..+.+  .+...|+  .|...| ....++++-..+.++..
T Consensus       796 yl-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAika  867 (1172)
T KOG0213|consen  796 YL-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKA  867 (1172)
T ss_pred             ch-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHH
Confidence            11     12456677889999999999999999999733222211  1112221  233344 45677888877777776


Q ss_pred             hhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204          255 FCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ  333 (559)
Q Consensus       255 L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  333 (559)
                      ++... -.....-+.+++|.|..+|++....|+++++..++.+++..++.+..---..++--|+++|+..+..+|..|..
T Consensus       868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~n  947 (1172)
T KOG0213|consen  868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVN  947 (1172)
T ss_pred             HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66543 12223345789999999999999999999999999999887765433222345666788888888899999999


Q ss_pred             HHHHhhcC--ChHHHHHHH----------------------h-C---CChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204          334 TIGHIVAG--DDFQTQCII----------------------N-C---GALPYLLVLLIHSHKKSIKNHACWTISKITAGN  385 (559)
Q Consensus       334 ~L~nl~~~--~~~~~~~~~----------------------~-~---g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  385 (559)
                      ++|.|+..  ..+....++                      + +   .++|.|+.=...+ ...|+.-.+.+++.+....
T Consensus       948 TfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyi 1026 (1172)
T KOG0213|consen  948 TFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYI 1026 (1172)
T ss_pred             hhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHH
Confidence            99998853  222111111                      1 1   2345555545566 7788888888888776532


Q ss_pred             HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC-------CCCChHHHHH
Q 042204          386 REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL-------PCANPTIVTV  458 (559)
Q Consensus       386 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-------~~~d~~v~~~  458 (559)
                      .+.-...+- .+.|.|-+.|.+.|..-+..|+.++.+++.+..        -.|+.+.++.||       -...|.++..
T Consensus      1027 gemskdYiy-av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa 1097 (1172)
T KOG0213|consen 1027 GEMSKDYIY-AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQA 1097 (1172)
T ss_pred             HHHhhhHHH-HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHH
Confidence            222222222 268888888988999999999999999998631        234444444444       3466788777


Q ss_pred             HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       459 ~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      ..+++..+-..                    +--.-.+..+..=..|+...|++..-.+.+..+
T Consensus      1098 ~~e~~eg~r~~--------------------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1098 FDEAMEGLRVA--------------------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred             HHHHHHHHHHH--------------------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence            77776664321                    111111233334457898899887777666543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=3.2e-09  Score=108.94  Aligned_cols=367  Identities=16%  Similarity=0.206  Sum_probs=230.7

Q ss_pred             HHHHHHHHHhcCCCHH-HHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCch
Q 042204           99 EIFAAMVAGVWSDDNN-LQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-EDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~-~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      +.++.++.....+.+. .+..++.++..+ |.+-.+..-.-....++..++.-... ..+..+|..|+.+|.|-......
T Consensus       129 ~li~~lv~nv~~~~~~~~k~~slealGyi-ce~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~  207 (859)
T KOG1241|consen  129 ELIVTLVSNVGEEQASMVKESSLEALGYI-CEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA  207 (859)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHH-HccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            3566677777766655 677788888886 44323331111223456666665543 23368999999999986653221


Q ss_pred             hHHH-HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          177 DTKV-VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       177 ~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                      +-.. .-..=++...+..-++++.+++..|..||..|..-..++-........+..-+..+ .+++.++.-.++...+++
T Consensus       208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWsti  286 (859)
T KOG1241|consen  208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTI  286 (859)
T ss_pred             hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHH
Confidence            2111 11123456677778889999999999999999754332212222222233334445 466778888888888888


Q ss_pred             hcCCC-------------CC--cHh----hHhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204          256 CRGMP-------------RP--IFE----QVRPALPVLAQLVHS-------NDKEVLTDACWALYFLSNGKNDKIQAVIE  309 (559)
Q Consensus       256 ~~~~~-------------~~--~~~----~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  309 (559)
                      |....             .+  ...    ....++|.|+++|..       ++...-..|-.||.-++....+.   ++.
T Consensus       287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~  363 (859)
T KOG1241|consen  287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP  363 (859)
T ss_pred             HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh
Confidence            85331             11  111    125788888888853       23445566666666555333322   222


Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204          310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI  389 (559)
Q Consensus       310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  389 (559)
                       -+++.+-+-+++++++-+..|..++|.+..+.+.....-+-.+++|.++.++.++ .-.++..++|+++.++.+.++.+
T Consensus       364 -~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~  441 (859)
T KOG1241|consen  364 -HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAI  441 (859)
T ss_pred             -hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhc
Confidence             3566667778889999999999999999999887666666778999999999977 88999999999999998655433


Q ss_pred             HHH-HHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHH----HHH---cCChHHHHhcCCC---CChHHHHH
Q 042204          390 QAV-IDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKY----LVR---EKCIKPLCDLLPC---ANPTIVTV  458 (559)
Q Consensus       390 ~~l-i~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~----l~~---~~~l~~L~~lL~~---~d~~v~~~  458 (559)
                      ..- .....++.++.-|.+ .|.+..+++|++.+++..........    ...   ..++..|+..-+.   .+..+|..
T Consensus       442 ~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~A  520 (859)
T KOG1241|consen  442 INQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSA  520 (859)
T ss_pred             ccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHH
Confidence            221 122345555555554 68999999999999985321000000    000   0123333333333   34578888


Q ss_pred             HHHHHHHHHHhhhhh
Q 042204          459 CLKGLENILKVGEAE  473 (559)
Q Consensus       459 ~l~~l~~il~~~~~~  473 (559)
                      +.++|..+.+...+.
T Consensus       521 AYeALmElIk~st~~  535 (859)
T KOG1241|consen  521 AYEALMELIKNSTDD  535 (859)
T ss_pred             HHHHHHHHHHcCcHH
Confidence            888888888776553

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.11  E-value=1.3e-08  Score=98.28  Aligned_cols=278  Identities=15%  Similarity=0.110  Sum_probs=201.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      +..+..|..+|.-+...+.+.+.++.+.. +....-....=....|...+++..+++-..-|++||..+.. -++.|..+
T Consensus       117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~  194 (442)
T KOG2759|consen  117 LSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAF  194 (442)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhee
Confidence            45677788888888877888888887654 22111100011234455566664447888899999999999 78999999


Q ss_pred             HhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          182 IDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      +...++..++..+.+  .+..++-+.+.|++-++...+. .+.+...+.++.|..++..+....+.+.++.++.|++...
T Consensus       195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~  273 (442)
T KOG2759|consen  195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG  273 (442)
T ss_pred             eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999998843  5678888999999999766544 4666788899999999988889999999999999999876


Q ss_pred             CCCc------HhhHhchHHHHHHhhc---cCCHhHHHHHHHHHHHhcc-------C--------------Ch--------
Q 042204          260 PRPI------FEQVRPALPVLAQLVH---SNDKEVLTDACWALYFLSN-------G--------------KN--------  301 (559)
Q Consensus       260 ~~~~------~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~-------~--------------~~--------  301 (559)
                      +...      ..++..-++..++.|.   .+|+++..+.-..-..|-.       .              ++        
T Consensus       274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW  353 (442)
T KOG2759|consen  274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW  353 (442)
T ss_pred             chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence            4322      2233444455555553   3566665544332222211       0              11        


Q ss_pred             -hHHHHHHHh--CcHHHHHHhhCCCC-CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHH
Q 042204          302 -DKIQAVIEA--GVCPRLVELLGHRS-SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT  377 (559)
Q Consensus       302 -~~~~~~~~~--g~l~~L~~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~  377 (559)
                       ++...+.+.  .++..|+.+|..++ +.+..-|+.=||..+...++....+.+.|+=+.++.+|+++ +++||.+|..+
T Consensus       354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALla  432 (442)
T KOG2759|consen  354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLA  432 (442)
T ss_pred             HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHH
Confidence             112223332  47889999998865 78888999999999999999888888999999999999999 99999999998


Q ss_pred             HHHhhc
Q 042204          378 ISKITA  383 (559)
Q Consensus       378 L~nl~~  383 (559)
                      +-.+..
T Consensus       433 vQ~lm~  438 (442)
T KOG2759|consen  433 VQKLMV  438 (442)
T ss_pred             HHHHHh
Confidence            876643

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.1e-08  Score=97.54  Aligned_cols=186  Identities=22%  Similarity=0.208  Sum_probs=155.1

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHH
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVP  188 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~  188 (559)
                      .+.+.+.+..|+..|..++..  -++...++..|+++.++..+++++ +.+|..|+|+|+.++..+|.....+++.|+++
T Consensus        93 ~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            466789999999999998654  788899999999999999999999 89999999999999999999999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204          189 IFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMPRPIFEQ  266 (559)
Q Consensus       189 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~  266 (559)
                      .|+..|.+ .+..++..|+.|++++....+...+.+...+++..|...+... .+..+++.++..+..+...........
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~  249 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA  249 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999986 5567789999999999999888888888888899999999543 678888999999999998774333333


Q ss_pred             H-hchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204          267 V-RPALPVLAQLVHSNDKEVLTDACWALYFLS  297 (559)
Q Consensus       267 ~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  297 (559)
                      . .+....+..+..+.+.++...++.++..+.
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            3 344445556666778888888877776655

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.7e-08  Score=94.97  Aligned_cols=188  Identities=20%  Similarity=0.204  Sum_probs=159.5

Q ss_pred             cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204          280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLL  359 (559)
Q Consensus       280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~  359 (559)
                      +.+.+-+..|+.-|.++++.-+ ....++..|++..++..+.+++..+|..|+++||.++.+++.....+++.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            4567788889999999885444 556789999999999999999999999999999999999999889999999999999


Q ss_pred             HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204          360 VLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN--AEINIKNWAAWAISNATSGGSHEQIKYLVR  437 (559)
Q Consensus       360 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  437 (559)
                      .++.+..+..+|..|.++++.+....+.....+...++...|.+.|++  .+..++..|+..+..++... ......+..
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~  251 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASS  251 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHH
Confidence            999877577888999999999999989989999998899999999998  57788899999999998853 333344455


Q ss_pred             cCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          438 EKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       438 ~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      .+....+..+...-+.++...++.++...+..
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            67777777777888888888888887776644

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=3.6e-07  Score=93.56  Aligned_cols=219  Identities=17%  Similarity=0.202  Sum_probs=165.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .-+.++..|.+.-+-++..|.-.+-++.-.- ++...     ..+|.|++-|.++| |.++..|..+++.+|..+|.+.-
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc
Confidence            4577888999999999999998888865432 23222     36899999999999 99999999999999998887654


Q ss_pred             HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH--Hhh
Q 042204          180 VVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS--NFC  256 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~--nL~  256 (559)
                      .     .-|.+.++|-+ .+.=+....+..+++++--.|.....     .+++|.+++....-.++...++.++.  +++
T Consensus       218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s  287 (877)
T KOG1059|consen  218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMS  287 (877)
T ss_pred             c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence            3     44778888764 34444556788888888777766555     47899999965555556655555543  334


Q ss_pred             cCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204          257 RGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG  336 (559)
Q Consensus       257 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  336 (559)
                      .+. ......+.-+++.|-.++.++|+.++.-+|-+++.+....+..++..     -+.++.+|.+.++.+|..|+..+.
T Consensus       288 ~g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  288 SGM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             cCC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence            332 23445567788889899999999999999999999997777555443     367889999999999999999999


Q ss_pred             HhhcC
Q 042204          337 HIVAG  341 (559)
Q Consensus       337 nl~~~  341 (559)
                      -++..
T Consensus       362 gmVsk  366 (877)
T KOG1059|consen  362 GMVSK  366 (877)
T ss_pred             HHhhh
Confidence            88864

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=8.9e-07  Score=91.63  Aligned_cols=323  Identities=17%  Similarity=0.192  Sum_probs=236.3

Q ss_pred             HHHHHHHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCc-
Q 042204           99 EIFAAMVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASKTS-  175 (559)
Q Consensus        99 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~-  175 (559)
                      +.++.|+..+.+.. .+.+..|+..|..+ +   ...+..+.. -+++.|++.|+.+ .++++...++..+.++.+.++ 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~-s---rkYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAF-S---RKYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHH-H---HHHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            57899999887654 68899999999886 3   234555554 4668888888754 348999999999999988542 


Q ss_pred             -----hhH----------HHH-HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC-chhhhhhhcc-CCHHHHHHHhc
Q 042204          176 -----EDT----------KVV-IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDS-PRCRDLVLSE-EALIPLLAQLN  237 (559)
Q Consensus       176 -----~~~----------~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~-g~l~~Ll~ll~  237 (559)
                           +.+          +.+ -..+.|..|+.++...+-.||..++..|.++.... ++.++.++.. -++..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 111          222 33578899999999999999999999999987554 4567766644 4688999999 


Q ss_pred             hhhhHhHHHHHHHHHHHhhcCCCCCcH-hhHhchHHHHHHhhccC---C-HhHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 042204          238 EHAKLSMLRTATWTLSNFCRGMPRPIF-EQVRPALPVLAQLVHSN---D-KEVLTDACWALYFLSNGKNDKIQAVIEAGV  312 (559)
Q Consensus       238 ~~~~~~~~~~a~~~L~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~---d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  312 (559)
                      .+....++-.++..|..+.++.+.... .....++..|..++...   | .-|..+|+..|.||...+....+.+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            666777888899999999998855443 44578899999998643   3 357899999999999888888888999999


Q ss_pred             HHHHHHhhCCC---CC-----c-----chhhHHHHHHHhhcCC-h----HHH-HHHHhCCChHHHHHHhcCC-CchhHHH
Q 042204          313 CPRLVELLGHR---SS-----S-----VLSPALQTIGHIVAGD-D----FQT-QCIINCGALPYLLVLLIHS-HKKSIKN  372 (559)
Q Consensus       313 l~~L~~lL~~~---~~-----~-----v~~~al~~L~nl~~~~-~----~~~-~~~~~~g~l~~L~~lL~~~-~~~~v~~  372 (559)
                      +|+|..+|...   +.     .     -...++.++..++.-. .    .+. ..+..++++..|..++.++ -..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            99999888642   21     1     1234667777666522 1    223 3456779999999999776 3568999


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHcC------CHHH----HHHHhhc-CChhHHHHHHHHHHHHhcCC
Q 042204          373 HACWTISKITAGNREQIQAVIDAG------LIGP----LINLLQN-AEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       373 ~a~~~L~nl~~~~~~~~~~li~~~------~i~~----Li~lL~~-~~~~v~~~a~~aL~nl~~~~  427 (559)
                      ++..++++..+++......+.+..      -.+.    ++.+..+ ..+..|..+.+++..+....
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            999999999998777666665321      1122    2222222 36788999999998887653

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=7.1e-07  Score=92.33  Aligned_cols=325  Identities=13%  Similarity=0.163  Sum_probs=237.9

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCc---
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSP---  217 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~---  217 (559)
                      .|+.|+.-+.+..-++-|..|++.|..++.   +.|..+. ..++++|++.|..  .++++...++.++.++.....   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            578888888776667889999999999887   4555554 4678999999876  678999999999999985442   


Q ss_pred             -----h--------hhh-hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH---hchHHHHHHhhcc
Q 042204          218 -----R--------CRD-LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV---RPALPVLAQLVHS  280 (559)
Q Consensus       218 -----~--------~r~-~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~---~~~l~~L~~lL~~  280 (559)
                           .        +.+ ++...+.+..++..+ ...|..++..++..++++.+..|......+   +.++..++.+|.+
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence                 1        112 233556677777777 677889999999999999988754433332   6788999999999


Q ss_pred             CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC---C-CcchhhHHHHHHHhhcCChHHHHHHHhCCChH
Q 042204          281 NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR---S-SSVLSPALQTIGHIVAGDDFQTQCIINCGALP  356 (559)
Q Consensus       281 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~---~-~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~  356 (559)
                      ..+.++..++..|+.++..++...+.+.=.+++.+|..++...   + .-|...|+..|.|+...+......+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            9999999999999999977775544555568999999999763   2 34778899999999998887778888999999


Q ss_pred             HHHHHhcCCC--c--------hhHH--HHHHHHHHHhhc-CCH----HHH-HHHHHcCCHHHHHHHhhcC--ChhHHHHH
Q 042204          357 YLLVLLIHSH--K--------KSIK--NHACWTISKITA-GNR----EQI-QAVIDAGLIGPLINLLQNA--EINIKNWA  416 (559)
Q Consensus       357 ~L~~lL~~~~--~--------~~v~--~~a~~~L~nl~~-~~~----~~~-~~li~~~~i~~Li~lL~~~--~~~v~~~a  416 (559)
                      .|..+|....  +        ..+.  ..|..++..+.. +++    .+. ..+...+++..|+.++.++  ..+++.++
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998885321  1        1121  345666666654 322    223 3455788999999999876  56899999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHcCC----------hHHHHhcCCC-CChHHHHHHHHHHHHHHHhhhhh
Q 042204          417 AWAISNATSGGSHEQIKYLVREKC----------IKPLCDLLPC-ANPTIVTVCLKGLENILKVGEAE  473 (559)
Q Consensus       417 ~~aL~nl~~~~~~~~~~~l~~~~~----------l~~L~~lL~~-~d~~v~~~~l~~l~~il~~~~~~  473 (559)
                      ..++.++..+ +......+.+-.+          +-.++.+..+ .....+.+++.++..++......
T Consensus       338 iitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  338 IITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            9999999987 4444445554221          2233444444 44588889999999888655443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=2.5e-07  Score=96.03  Aligned_cols=341  Identities=17%  Similarity=0.171  Sum_probs=237.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ...+.+++.....|.+.+...--.+.+.....  |.. .   .++++.++.=..+++ |.+|..|++.++.+--  +...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~-a---~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDL-A---ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chH-H---HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence            46899999999999888888878888876543  221 1   246777777777788 8999999988877665  2222


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      .     -+...+...+++.++.+|..++.+..++-..++   +.+...|.++.|-.++ .+.++.+..+|+.+|..+...
T Consensus       120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            2     356789999999999999999999999865543   5677888899999888 588899999999999999987


Q ss_pred             CCC-CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          259 MPR-PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       259 ~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      .+. .........+..++..+...++.-+...+.++.+-...++...+     .++.++...|.|.+..+...+...+.+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            753 33444456666677777666677777777777766544332222     357889999999999999999999988


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHH-------------------------H
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQA-------------------------V  392 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-------------------------l  392 (559)
                      ....-......+. ..+-+.++.++.+. . .++.-|..-+.-+....++....                         +
T Consensus       266 ~~~~~~~~~~~~~-~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNELLF-KKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHHHHH-HHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            8876554333333 35667777777766 3 55544444333333222321111                         0


Q ss_pred             H-HcC---CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          393 I-DAG---LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       393 i-~~~---~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                      . +.+   ++..|...-..-|.+..+++++||++++...+..       .++++.|.++++.+-..++..+...+..++.
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            0 111   2222222333457888899999999998853221       5789999999988777777777778888887


Q ss_pred             hhhh
Q 042204          469 VGEA  472 (559)
Q Consensus       469 ~~~~  472 (559)
                      ..++
T Consensus       416 kyP~  419 (734)
T KOG1061|consen  416 KYPN  419 (734)
T ss_pred             cCCC
Confidence            6544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.99  E-value=1.7e-07  Score=90.69  Aligned_cols=323  Identities=14%  Similarity=0.101  Sum_probs=222.3

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHH-------hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 042204           99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVI-------QSGVVPRFVEFLMREDYPQLQYEAAWALTNI  170 (559)
Q Consensus        99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii-------~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl  170 (559)
                      ..+..++..+... .++.....+..+..+++..  ..+..+.       ..-.-+.++.+|.+.+ .-+...+.++++.+
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~l  141 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKL  141 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence            3556667766643 3456667788888888863  3333222       1234677889999988 78888899999999


Q ss_pred             hcCCchhHHHHHhCC-CHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHh-chhhhHhHHHH
Q 042204          171 ASKTSEDTKVVIDHG-AVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL-NEHAKLSMLRT  247 (559)
Q Consensus       171 ~~~~~~~~~~i~~~g-~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll-~~~~~~~~~~~  247 (559)
                      +......... .+-. ....|...+++ .+.+....|+.||..+... +++|..+...+++..++..+ ....+.+++..
T Consensus       142 a~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq  219 (442)
T KOG2759|consen  142 ACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQ  219 (442)
T ss_pred             HHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence            8843322111 0100 12233344444 6777778888999998876 45688888888889999888 55567888999


Q ss_pred             HHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCCh------hHHHHHHHhCcHHHHHHhh
Q 042204          248 ATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKN------DKIQAVIEAGVCPRLVELL  320 (559)
Q Consensus       248 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~------~~~~~~~~~g~l~~L~~lL  320 (559)
                      .+.+++-|+.+.+........+.++.|..++++. .+.|..-++.++.|+.+..+      +....++..++.+.+-.+.
T Consensus       220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~  299 (442)
T KOG2759|consen  220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE  299 (442)
T ss_pred             HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence            9999999988764444444568899999999754 68899999999999997764      3334456656655554444


Q ss_pred             CC--CCCcchhhHHH-------HHHHhhcCChH-----------------------HHHHHHh--CCChHHHHHHhcCCC
Q 042204          321 GH--RSSSVLSPALQ-------TIGHIVAGDDF-----------------------QTQCIIN--CGALPYLLVLLIHSH  366 (559)
Q Consensus       321 ~~--~~~~v~~~al~-------~L~nl~~~~~~-----------------------~~~~~~~--~g~l~~L~~lL~~~~  366 (559)
                      ..  +++.+....-.       -.-.+++.+..                       ..+.+.+  ..++..|+.+|+...
T Consensus       300 ~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~  379 (442)
T KOG2759|consen  300 ERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN  379 (442)
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence            33  23332221111       11112221111                       0111111  246889999998875


Q ss_pred             chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          367 KKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       367 ~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      +|.+-.-||.=|+......|+....+.+.|+=+.+++++.++|++|+.+|+.|+..+..+
T Consensus       380 Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  380 DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            788999999999999999999988888999999999999999999999999999887653

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.95  E-value=4.5e-08  Score=96.64  Aligned_cols=227  Identities=15%  Similarity=0.153  Sum_probs=161.7

Q ss_pred             HHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCCCCcHhhHh-------chHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204          229 LIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMPRPIFEQVR-------PALPVLAQLVHSNDKEVLTDACWALYFLSNGK  300 (559)
Q Consensus       229 l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~-------~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  300 (559)
                      ...++++|... .+.++.+.++..+..++...+........       .....++.++..+|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            45566777666 78899999999999999988654433321       24566777888999999999999999998766


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh------cCCCchhH
Q 042204          301 NDKIQAVIEAGVCPRLVELLGH----RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL------IHSHKKSI  370 (559)
Q Consensus       301 ~~~~~~~~~~g~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL------~~~~~~~v  370 (559)
                      +....... .++++.++..+.+    ++..++..|+++++++.. .+..+..+.+.++++.+..+|      .+.....+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            65433322 4566777766654    445677889999999986 455667788899999999999      44436788


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204          371 KNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP  449 (559)
Q Consensus       371 ~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  449 (559)
                      +.+++.++.-++ .+++.+..+.+.++++.|+++++.. ..++.+-++.++.|++..........++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            899999998885 5688888999889999999999865 67899999999999999876668888888888887777764


Q ss_pred             --CCChHHHHH
Q 042204          450 --CANPTIVTV  458 (559)
Q Consensus       450 --~~d~~v~~~  458 (559)
                        ..|+++..-
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence              467876554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.90  E-value=4.5e-08  Score=96.63  Aligned_cols=228  Identities=20%  Similarity=0.239  Sum_probs=158.6

Q ss_pred             HHHHHHhhC--CCCHHHHHHHHHHHHHHhCCCchhhhhhhc------cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          187 VPIFVKLLA--SPNDDIREQAVWALGNVAGDSPRCRDLVLS------EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       187 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ...++.+|+  ++++++.+.++..+..+..+.+...+.+..      ...+.++++++ ..+|..+...++..++.+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            444555554  468999999999999999888876555544      22678889876 566889999999999999988


Q ss_pred             CCCCcHhhHhchHHHHHHhhc----cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-----CC--CCCcc
Q 042204          259 MPRPIFEQVRPALPVLAQLVH----SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-----GH--RSSSV  327 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-----~~--~~~~v  327 (559)
                      .+........+.++.++..+.    +++.+++..++.++.++.. .+.....+.+.+.++.+..++     .+  ....+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            766555544566666666665    4566778999999999984 455667888899999999999     22  23567


Q ss_pred             hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH-HHHHHHHcCCHHHHHHHhh
Q 042204          328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-QIQAVIDAGLIGPLINLLQ  406 (559)
Q Consensus       328 ~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li~~~~i~~Li~lL~  406 (559)
                      +..++.+++.++. +++....+.+.++++.|..+++....++|-+-+..++.|+....++ ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            7889999998887 4556677888889999999998766889999999999999975443 6777888877776666654


Q ss_pred             c--CChhHHHHHH
Q 042204          407 N--AEINIKNWAA  417 (559)
Q Consensus       407 ~--~~~~v~~~a~  417 (559)
                      .  +|+++....-
T Consensus       294 rk~~Dedl~edl~  306 (312)
T PF03224_consen  294 RKWSDEDLTEDLE  306 (312)
T ss_dssp             S--SSHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            3  3777665443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.89  E-value=1.7e-06  Score=86.53  Aligned_cols=357  Identities=12%  Similarity=0.113  Sum_probs=221.1

Q ss_pred             HHHHHHHHHhcC-------CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 042204           99 EIFAAMVAGVWS-------DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIA  171 (559)
Q Consensus        99 ~~l~~lv~~L~s-------~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~  171 (559)
                      ..+|.+++.|..       +|+..-..|..+|.-+....    -+.+++. ++..+-+-+++++ ..-++.|+.+++.+.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm  394 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence            478999998864       34566666666665543221    1222221 3444445567777 588999999999999


Q ss_pred             cCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch--hhhHhHHHHHH
Q 042204          172 SKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE--HAKLSMLRTAT  249 (559)
Q Consensus       172 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~--~~~~~~~~~a~  249 (559)
                      .+..+....-+-..++|.+...+.++..-+++.++||++.|+.+-+   ..+-..|.+.+.+.....  ...+....+++
T Consensus       395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs  471 (858)
T COG5215         395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCS  471 (858)
T ss_pred             cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence            8755554444445789999999998888999999999999986533   233344545544443321  23456778899


Q ss_pred             HHHHHhhcCCCCCc---HhhHhchHHHHHHhh------ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh
Q 042204          250 WTLSNFCRGMPRPI---FEQVRPALPVLAQLV------HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL  320 (559)
Q Consensus       250 ~~L~nL~~~~~~~~---~~~~~~~l~~L~~lL------~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL  320 (559)
                      |+.-||...-+...   ...+....+.++.-|      ..++...+..+..+|+.+....++....++ .|+.......|
T Consensus       472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl  550 (858)
T COG5215         472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKL  550 (858)
T ss_pred             HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHH
Confidence            99999987663222   112223333333222      134567788888888888765554433222 12322222222


Q ss_pred             -----------CCCC----CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204          321 -----------GHRS----SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN  385 (559)
Q Consensus       321 -----------~~~~----~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  385 (559)
                                 ...+    .+++..-+..|..+.......++.+- ..++..++.+|.+.....+-.....++++++..-
T Consensus       551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl  629 (858)
T COG5215         551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAISALSTSL  629 (858)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence                       2222    23444555555555543322111111 1356678888887723345567788999997654


Q ss_pred             HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC--ChHHHHHHHHHH
Q 042204          386 REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA--NPTIVTVCLKGL  463 (559)
Q Consensus       386 ~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~~l~~l  463 (559)
                      .+....... .++|.|.+.|...|..+...|+..++.++..-..+...+  .......|+++|.++  +.++...++.++
T Consensus       630 ~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvF  706 (858)
T COG5215         630 EERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVF  706 (858)
T ss_pred             HHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHH
Confidence            555555444 399999999988899999999999999987544343333  334678888998775  457778888888


Q ss_pred             HHHHHh
Q 042204          464 ENILKV  469 (559)
Q Consensus       464 ~~il~~  469 (559)
                      ..|.-.
T Consensus       707 gDIAla  712 (858)
T COG5215         707 GDIALA  712 (858)
T ss_pred             HHHHHH
Confidence            877644

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=9.4e-06  Score=82.82  Aligned_cols=354  Identities=16%  Similarity=0.099  Sum_probs=223.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      |-.-+.|++...+...++...+...++..  -.+....-..++..+++-++.+. +.+|...+.||.-+... .+.... 
T Consensus        58 ~~~~~~l~~~~~~~~~~~~~v~~~~~a~~--~~~~d~~~~~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~-~~~~~~-  132 (569)
T KOG1242|consen   58 PCFEQRLNSLHNDNLRNNVVVLEGTLAFH--LQIVDPRPISIIEILLEELDTPS-KSVQRAVSTCLPPLVVL-SKGLSG-  132 (569)
T ss_pred             HHHHHHhccchhHHHhhhhHHHHHHHHHh--ccccCcchhHHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHH-hhccCH-
Confidence            33444555544444444444444433331  11111111236778888888888 89999999998877652 221111 


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204          182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR  261 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~  261 (559)
                        .-+.+.+.+++......-+..+.+.++.+......  ..+.+.+++..+...+....+..-++.+..++-..+..-..
T Consensus       133 --~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~  208 (569)
T KOG1242|consen  133 --EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP  208 (569)
T ss_pred             --HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence              12567788888888888889999999998766433  34456677777777774333333333344444433333323


Q ss_pred             CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 042204          262 PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG  341 (559)
Q Consensus       262 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  341 (559)
                      .....+...+|.++.-+.+....++..+..+..-+...-+...-.    -+++.++.-+....++....++..++.++..
T Consensus       209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADC  284 (569)
T ss_pred             CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            333344566777777777788888888777766655332221111    1345555444445888899999999999998


Q ss_pred             ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHH-------------------------
Q 042204          342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVID-------------------------  394 (559)
Q Consensus       342 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~-------------------------  394 (559)
                      .+.+.... ...++|.+.+.|.+. .+++|+.+..++..++.  .+++ ++.++.                         
T Consensus       285 ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF  361 (569)
T KOG1242|consen  285 APKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTF  361 (569)
T ss_pred             chHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence            88776543 448999999999999 99999999999999876  3333 443221                         


Q ss_pred             -----cC----CHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHH
Q 042204          395 -----AG----LIGPLINLLQNAEINIKNWAAWAISNATSGG-SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLE  464 (559)
Q Consensus       395 -----~~----~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~  464 (559)
                           .-    ++|.|.+-+...+..+++.++.++.|++.-- ++.....++. .+++.|-..+....|+++..+..+|.
T Consensus       362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~  440 (569)
T KOG1242|consen  362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALG  440 (569)
T ss_pred             eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHH
Confidence                 11    2333333334456778899999999998753 3443333222 26777777777789999999999998


Q ss_pred             HHHHhhhh
Q 042204          465 NILKVGEA  472 (559)
Q Consensus       465 ~il~~~~~  472 (559)
                      .+++....
T Consensus       441 ~l~e~~g~  448 (569)
T KOG1242|consen  441 ALLERLGE  448 (569)
T ss_pred             HHHHHHHh
Confidence            88876443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.83  E-value=1.6e-07  Score=94.42  Aligned_cols=308  Identities=15%  Similarity=0.161  Sum_probs=191.4

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh--hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCC
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR--DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRP  262 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~  262 (559)
                      ++...+.+|+++.+.+|++|+...+.++..-..|-  ..+...|.  .|..-| ....++++-..+.+++.+.... -..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            56778889999999999999999998863211111  11111121  122233 3456777777666666665433 122


Q ss_pred             cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-
Q 042204          263 IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG-  341 (559)
Q Consensus       263 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~-  341 (559)
                      .+.-+.+++|.|..+|++....+..+.+..++.++...++.+..---..++--|+..|++.+.++|..|..++|.|+.. 
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            2234578999999999999999999999999999988776543322234556678888888889999999999988763 


Q ss_pred             -ChHHHHHHH----------------------h-CC---ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH-HHHHHH
Q 042204          342 -DDFQTQCII----------------------N-CG---ALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-QIQAVI  393 (559)
Q Consensus       342 -~~~~~~~~~----------------------~-~g---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li  393 (559)
                       ..+....++                      + +|   ++|.|+.=...+ ...|+.....+++.+.....+ ...++.
T Consensus       762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy  840 (975)
T COG5181         762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVY  840 (975)
T ss_pred             CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence             222111111                      1 13   344444444455 677887777777766542122 122222


Q ss_pred             HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH-HHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204          394 DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ-IKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       394 ~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~  472 (559)
                        .+.|.|-+.|.+.|+.-+..|...|.+++.++.... ...++  .++..|..-+-.+.|.++....+++..+...-  
T Consensus       841 --~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I--HLlNllwpNIle~sPhvi~~~~Eg~e~~~~~l--  914 (975)
T COG5181         841 --SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI--HLLNLLWPNILEPSPHVIQSFDEGMESFATVL--  914 (975)
T ss_pred             --HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH--HHHHHhhhhccCCCcHHHHHHHHHHHHHHHHh--
Confidence              267888888888999999999999999987642110 01111  12233333335677888888887777655321  


Q ss_pred             hcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          473 EKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       473 ~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                               +...+         +..+..=..|+...|+++.-...+..
T Consensus       915 ---------g~g~~---------m~Yv~qGLFHPs~~VRk~ywtvyn~m  945 (975)
T COG5181         915 ---------GSGAM---------MKYVQQGLFHPSSTVRKRYWTVYNIM  945 (975)
T ss_pred             ---------ccHHH---------HHHHHHhccCchHHHHHHHHHHHhhh
Confidence                     11111         23344446799999988765555543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.1e-05  Score=85.78  Aligned_cols=328  Identities=15%  Similarity=0.161  Sum_probs=222.2

Q ss_pred             HHHHHHHHHHHhccCCCCchHHHHH-----hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHH
Q 042204          115 LQLEATTKFRKLLSIERSPPIEEVI-----QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPI  189 (559)
Q Consensus       115 ~~~~a~~~l~~lls~~~~~~~~~ii-----~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~  189 (559)
                      -...++.+|+++++.  +|....+.     --|.++-+...|.....+.++..|+.++..+.. +.++...+++.|.+..
T Consensus      1741 ~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            456789999999887  44333332     236778888888776558999999999887777 8999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC---CCCcHhh
Q 042204          190 FVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM---PRPIFEQ  266 (559)
Q Consensus       190 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~---~~~~~~~  266 (559)
                      |+.+|.+. +..|+.++..|..++.. ++......+.|++..++.++..++..+.+..+...+..|...+   |...+..
T Consensus      1818 LL~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            99999764 57888899999998765 4445566788999999999988888899999999999998776   3333322


Q ss_pred             HhchHH-----------HHHHhhc--cCCHhH------HHHHHHHHHHhcc--------CC------hhHH---------
Q 042204          267 VRPALP-----------VLAQLVH--SNDKEV------LTDACWALYFLSN--------GK------NDKI---------  304 (559)
Q Consensus       267 ~~~~l~-----------~L~~lL~--~~d~~v------~~~a~~~L~~l~~--------~~------~~~~---------  304 (559)
                      +..+-.           ..++.+.  +.+|++      +...-..+..+..        ++      +++.         
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            222222           2233332  122222      1111112222210        00      0000         


Q ss_pred             --------HHH-------------HHhCcHHHHHHhhCCCCCcc--hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 042204          305 --------QAV-------------IEAGVCPRLVELLGHRSSSV--LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL  361 (559)
Q Consensus       305 --------~~~-------------~~~g~l~~L~~lL~~~~~~v--~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l  361 (559)
                              +.+             .-.++++.+.++|..+.+.-  ....-.++..+....+...+.+-..|-+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                    001             11235666677776654432  2223334445555666666777778999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 042204          362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCI  441 (559)
Q Consensus       362 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  441 (559)
                      +.+. +..+-+.|.++|..++. +.-....+.....+..+++.++.. .....-|+.+|..+......+.+....+.|++
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            9877 66777889999998865 345556666655666677777653 45556889999999887677788888899999


Q ss_pred             HHHHhcCCC
Q 042204          442 KPLCDLLPC  450 (559)
Q Consensus       442 ~~L~~lL~~  450 (559)
                      +.|..+|+.
T Consensus      2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHhcc
Confidence            999999965

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.9e-06  Score=89.67  Aligned_cols=257  Identities=15%  Similarity=0.140  Sum_probs=156.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      ....+.+-|++.+.-++-.|+..|.++.+.   +.+..     +.|-+.++|++.+ |-+|..|+.|...+....|+...
T Consensus       108 ltNslknDL~s~nq~vVglAL~alg~i~s~---Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e  178 (866)
T KOG1062|consen  108 LTNSLKNDLNSSNQYVVGLALCALGNICSP---EMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVE  178 (866)
T ss_pred             HHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHH
Confidence            445667778888888888999999997653   33332     5688888898888 89999999999988887766554


Q ss_pred             HHHh----------CCC----HHHHHHhhCCC------CHHHHHHHHHHHHHHhCCC--chhhhhhhccCCHH-------
Q 042204          180 VVID----------HGA----VPIFVKLLASP------NDDIREQAVWALGNVAGDS--PRCRDLVLSEEALI-------  230 (559)
Q Consensus       180 ~i~~----------~g~----i~~L~~lL~~~------~~~v~~~a~~~L~nl~~~~--~~~r~~i~~~g~l~-------  230 (559)
                      .++.          +|+    +..+..+.+..      ..++...-+..|-++....  |++-    -.|+-.       
T Consensus       179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd----v~gi~dPFLQi~i  254 (866)
T KOG1062|consen  179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD----VHGISDPFLQIRI  254 (866)
T ss_pred             HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC----ccCCCchHHHHHH
Confidence            4332          233    33344443331      1234445566666665322  2210    112212       


Q ss_pred             -HHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC---cHhhH-----------------hchHHHHHHhhccCCHhHHHHH
Q 042204          231 -PLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP---IFEQV-----------------RPALPVLAQLVHSNDKEVLTDA  289 (559)
Q Consensus       231 -~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~-----------------~~~l~~L~~lL~~~d~~v~~~a  289 (559)
                       .++++| ...+.+.-....-.|..++++....   -....                 .-++..|-++|.+.|..++.-+
T Consensus       255 LrlLriL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva  333 (866)
T KOG1062|consen  255 LRLLRIL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA  333 (866)
T ss_pred             HHHHHHh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee
Confidence             223334 2334444455555556655543111   01111                 2234455556666666666666


Q ss_pred             HHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 042204          290 CWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKS  369 (559)
Q Consensus       290 ~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~  369 (559)
                      +..|.++...++...+.-.     ..++++|++++..++..|+..+..|+..+..  .     ..+..|+..|.+. ++.
T Consensus       334 Ln~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~Nv--~-----~mv~eLl~fL~~~-d~~  400 (866)
T KOG1062|consen  334 LNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNESNV--R-----VMVKELLEFLESS-DED  400 (866)
T ss_pred             hhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhccccH--H-----HHHHHHHHHHHhc-cHH
Confidence            6666666655554333221     4578899999999999999999888865432  2     2356788888888 888


Q ss_pred             HHHHHHHHHHHhhc
Q 042204          370 IKNHACWTISKITA  383 (559)
Q Consensus       370 v~~~a~~~L~nl~~  383 (559)
                      .|...+.-+..++.
T Consensus       401 ~k~~~as~I~~laE  414 (866)
T KOG1062|consen  401 FKADIASKIAELAE  414 (866)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888888887775

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.1e-05  Score=84.20  Aligned_cols=379  Identities=16%  Similarity=0.090  Sum_probs=220.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      |.++ -++.+.|++.-.+.-+.-...-++- ++.+..-.     +...+.+=|++++ .-++-.|+-+|++|++  +|..
T Consensus        71 Gqie-clKLias~~f~dKRiGYLaamLlLd-E~qdvllL-----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Ema  140 (866)
T KOG1062|consen   71 GQIE-CLKLIASDNFLDKRIGYLAAMLLLD-ERQDLLLL-----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMA  140 (866)
T ss_pred             hhhH-HHHHhcCCCchHHHHHHHHHHHHhc-cchHHHHH-----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHh
Confidence            4443 3456777776555555444433332 32333222     3455666677777 6888999999999997  5655


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh--------h--ccC----CHHHHHHHhchhh----
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV--------L--SEE----ALIPLLAQLNEHA----  240 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i--------~--~~g----~l~~Ll~ll~~~~----  240 (559)
                      ..+     .|-+.+++++.++.+|..|+.|...+....|+.-+.+        .  ..|    ++..+..++..+.    
T Consensus       141 rdl-----apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~  215 (866)
T KOG1062|consen  141 RDL-----APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS  215 (866)
T ss_pred             HHh-----hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence            544     5778889999999999999999999987777643332        2  223    3444455543221    


Q ss_pred             -hHhHHHHHHHHHHHhhcCC--CCCcHhhH-hchHH----HHHHhhccCCHhHHHHHHHHHHHhccCChhHH---HH-HH
Q 042204          241 -KLSMLRTATWTLSNFCRGM--PRPIFEQV-RPALP----VLAQLVHSNDKEVLTDACWALYFLSNGKNDKI---QA-VI  308 (559)
Q Consensus       241 -~~~~~~~a~~~L~nL~~~~--~~~~~~~~-~~~l~----~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~---~~-~~  308 (559)
                       -.++....+..|.++....  |.-....+ .+.++    .++.+|..+|++....-...|..++...+...   .+ +.
T Consensus       216 ~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY  295 (866)
T KOG1062|consen  216 YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY  295 (866)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH
Confidence             1236666778888888766  22222111 23333    24556677787777777777777775433211   11 11


Q ss_pred             Hh---------------CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHH
Q 042204          309 EA---------------GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNH  373 (559)
Q Consensus       309 ~~---------------g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~  373 (559)
                      +.               -++..|-++|.+.+..++.-|+..|...+..++...+.-     =..++..|+++ +..+|+.
T Consensus       296 E~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrr  369 (866)
T KOG1062|consen  296 ECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRR  369 (866)
T ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHH
Confidence            10               023444455555555666666666666665554333221     13577889999 9999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh
Q 042204          374 ACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP  453 (559)
Q Consensus       374 a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  453 (559)
                      |...+..+..  ..++..+     +..|+..|...+++.+...+.-+..++..-.|+..-+      |+.+...|...-.
T Consensus       370 alELs~~lvn--~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~  436 (866)
T KOG1062|consen  370 ALELSYALVN--ESNVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGD  436 (866)
T ss_pred             HHHHHHHHhc--cccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhccc
Confidence            9998887753  3445544     5568888988899999999999998887655554433      5555555655443


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          454 TIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       454 ~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      -|..-+...+..++..+......    .....+...+.+.       .++.-+.+.+.+-|.|+|-.|=
T Consensus       437 ~V~~dv~~nll~LIa~~~~e~~~----y~~~rLy~a~~~~-------~~~~is~e~l~qVa~W~IGEYG  494 (866)
T KOG1062|consen  437 FVNDDVVNNLLRLIANAFQELHE----YAVLRLYLALSED-------TLLDISQEPLLQVASWCIGEYG  494 (866)
T ss_pred             ccchhhHHHHHHHHhcCCcchhh----HHHHHHHHHHhhh-------hhhhhhhhhHHHHHHHHhhhhh
Confidence            33333333333333322111000    0111111111111       1344455566777888887763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=4e-07  Score=96.70  Aligned_cols=271  Identities=17%  Similarity=0.203  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH
Q 042204          113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK  192 (559)
Q Consensus       113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~  192 (559)
                      ...|+.|...--..-+..+.|+-+       +|.+++.|-+   .--|..|+..|+....-.+-....-..-|+.|..++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            456777777777776766667655       4666666655   345778899999888767777777788899999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh--hHhHHHHHHHHHHHhhcCCCCCcHhhH-hc
Q 042204          193 LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA--KLSMLRTATWTLSNFCRGMPRPIFEQV-RP  269 (559)
Q Consensus       193 lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~-~~  269 (559)
                      +|+++-.+++-..+.+.+.|...++.|+..+++.++...++..|..+.  +++-+..++.+|+.++++.+.-..... .+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            999999999999999999998777888877777777777777774422  446677799999999998754444443 56


Q ss_pred             hHHHHHHhhccC-CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----ChH
Q 042204          270 ALPVLAQLVHSN-DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG----DDF  344 (559)
Q Consensus       270 ~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~  344 (559)
                      ++...+..|+++ .+-++..+|-+|+.|-...++..=.-.+.+..+.|..+|.++-++||..|+.+||.+..+    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            777788888875 678899999999999876665433445667889999999999999999999999999885    233


Q ss_pred             HHHHH------------HhCCCh---HHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 042204          345 QTQCI------------INCGAL---PYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVID  394 (559)
Q Consensus       345 ~~~~~------------~~~g~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~  394 (559)
                      ++..+            ++..+.   -.++.+++.. .+-++.+.+-+|+.+..+...++..+.-
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            33222            222222   3566677777 8999999999999998876666555443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.73  E-value=3e-06  Score=84.75  Aligned_cols=323  Identities=12%  Similarity=0.133  Sum_probs=210.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204          103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI  182 (559)
Q Consensus       103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  182 (559)
                      .+-+.++++++.-+..|+-++..++.+........++ ...+|.+.....++. -.++..++||++.|+.+-   ...+-
T Consensus       370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~v---a~~i~  444 (858)
T COG5215         370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC-LWVKSTTAWCFGAIADHV---AMIIS  444 (858)
T ss_pred             HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce-eehhhHHHHHHHHHHHHH---HHhcC
Confidence            3445678999999999999999988765333344433 346788888777655 689999999999999842   33344


Q ss_pred             hCCCHHHHHHhhC---CCCHHHHHHHHHHHHHHhCCCchhhhhhh--ccCCHHHHHHHhch-----hhhHhHHHHHHHHH
Q 042204          183 DHGAVPIFVKLLA---SPNDDIREQAVWALGNVAGDSPRCRDLVL--SEEALIPLLAQLNE-----HAKLSMLRTATWTL  252 (559)
Q Consensus       183 ~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~l~~Ll~ll~~-----~~~~~~~~~a~~~L  252 (559)
                      ..|-++..++...   ...+.+...+.|..-|++.+-++.-..+.  -....+.+++-|..     .++...+..+..+|
T Consensus       445 p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaL  524 (858)
T COG5215         445 PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSAL  524 (858)
T ss_pred             ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence            4555555554322   25678888999999999876554321110  11233344443322     23445666677777


Q ss_pred             HHhhcCCCCCcHhhHhchHH-----------HHHHhhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHH
Q 042204          253 SNFCRGMPRPIFEQVRPALP-----------VLAQLVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV  317 (559)
Q Consensus       253 ~nL~~~~~~~~~~~~~~~l~-----------~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~  317 (559)
                      ..|....|........++..           .+-+.+...|    ++++.+.+..|..+.......++.+-+ -++..++
T Consensus       525 gtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~  603 (858)
T COG5215         525 GTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFI  603 (858)
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHH
Confidence            77776665544444333333           2222333233    566777777777766444333333222 2677788


Q ss_pred             HhhCCCCCc-chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 042204          318 ELLGHRSSS-VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAG  396 (559)
Q Consensus       318 ~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~  396 (559)
                      ++|.+.++. +-.....+|+++++.-.++..... ..++|.|..-|+.. +..+...|...++.++..-...+....+. 
T Consensus       604 r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~-~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~df~~y~d~-  680 (858)
T COG5215         604 RILESTKPTTAFGDVYTAISALSTSLEERFEQYA-SKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGTDFNIYADV-  680 (858)
T ss_pred             HHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhhhHHHHHHH-
Confidence            888887554 456688899999986666654443 37899999999887 88899999999999986433444444443 


Q ss_pred             CHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCHHHHHH
Q 042204          397 LIGPLINLLQNA--EINIKNWAAWAISNATSGGSHEQIKY  434 (559)
Q Consensus       397 ~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~  434 (559)
                      +...|++.|+++  +.+++-.++.+++.++..-......|
T Consensus       681 ~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~Y  720 (858)
T COG5215         681 LMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESY  720 (858)
T ss_pred             HHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHH
Confidence            788899999876  67888888999988877544444444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1.2e-07  Score=93.84  Aligned_cols=306  Identities=13%  Similarity=0.104  Sum_probs=198.1

Q ss_pred             HHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCC
Q 042204          204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSND  282 (559)
Q Consensus       204 ~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d  282 (559)
                      .++.+|-.++..-...|.-+.+..+.++|++.| ..++.-+...++..++|+.-.. +-.......+++..|+.++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            344455555555455677777888899999999 5555556666777788876554 33334445889999999999999


Q ss_pred             HhHHHHHHHHHHHhccCChhHHH-HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH---HHHHHHhC----CC
Q 042204          283 KEVLTDACWALYFLSNGKNDKIQ-AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF---QTQCIINC----GA  354 (559)
Q Consensus       283 ~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~~~~~----g~  354 (559)
                      ..++.+..|.++.+..+.++..+ .++..-.+..++.+..++...++..++.++.|+.+.+..   ..+..++.    -.
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999876554422 345555678999999999999999999999999884432   22222222    24


Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHH-cCCHHHHHHHhhcC-----------ChhHHHHHHHHHHH
Q 042204          355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVID-AGLIGPLINLLQNA-----------EINIKNWAAWAISN  422 (559)
Q Consensus       355 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~-~~~i~~Li~lL~~~-----------~~~v~~~a~~aL~n  422 (559)
                      .+.|++.+... +|-.-.+.++.|.++++.+....+.+++ ..++..+..+|...           ...+-........+
T Consensus       567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            56777777777 7777778899999998866555555543 23444444444211           11222222233333


Q ss_pred             HhcCCCHHHHHHHHHcCCh--HHHHhcCC---CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHH
Q 042204          423 ATSGGSHEQIKYLVREKCI--KPLCDLLP---CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLE  497 (559)
Q Consensus       423 l~~~~~~~~~~~l~~~~~l--~~L~~lL~---~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~  497 (559)
                      +....+  ..    +.+..  +++-.+=+   .++.++.....|.+.++....+..+..    ..+.+.++.+.+.|.-+
T Consensus       646 l~e~~d--~f----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~e  715 (743)
T COG5369         646 LSENSD--KF----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIRE  715 (743)
T ss_pred             cccccc--cc----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHHH
Confidence            333211  00    11111  22222211   123456666677777755433222111    13457889999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          498 KIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       498 ~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      -+.++|.|+.+.|++++-.+++..
T Consensus       716 ~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         716 WLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhh
Confidence            999999999999999999998743

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2.2e-06  Score=89.24  Aligned_cols=340  Identities=17%  Similarity=0.159  Sum_probs=217.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .++..+++-..+.++.++..|++....+   .......     -+...+.+.+++.+ +-+|..|+-++.++-..+   .
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~v~~i~e-----y~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~  153 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCL---RVDKITE-----YLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P  153 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeE---eehHHHH-----HHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence            4556666666666776666554443332   1111122     24567888888888 899999999998887743   4


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      +.+.+.|.++.|..++.+.++.|...|+.+|..|....+..-...+....+..++..+...    .--.-+..|-.++..
T Consensus       154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec----~EW~qi~IL~~l~~y  229 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC----TEWGQIFILDCLAEY  229 (734)
T ss_pred             hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh----hhhhHHHHHHHHHhc
Confidence            5677889999999999999999999999999999876653111111222233344333221    112233455566666


Q ss_pred             CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                      .|... .....++..+...|.+.+..+...+...+.++....... ...+-..+-+.++.++...+ .++.-|++-+.-+
T Consensus       230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li  306 (734)
T KOG1061|consen  230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLI  306 (734)
T ss_pred             CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence            55544 334556677777888888999988998888887554432 23333346667777777766 7777777777666


Q ss_pred             hcCChHHHHHH--------------------------HhCCChHHHHHHh---cCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204          339 VAGDDFQTQCI--------------------------INCGALPYLLVLL---IHSHKKSIKNHACWTISKITAGNREQI  389 (559)
Q Consensus       339 ~~~~~~~~~~~--------------------------~~~g~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~  389 (559)
                      ....+.....-                          -++.+-+.+.++.   ..- +.+.-++|.+++++++..-.+. 
T Consensus       307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~-  384 (734)
T KOG1061|consen  307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS-  384 (734)
T ss_pred             HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence            65444321100                          0111112222222   122 5667788999999997632221 


Q ss_pred             HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHHH
Q 042204          390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENILK  468 (559)
Q Consensus       390 ~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il~  468 (559)
                           .+.+..|++++...-..+..+++..+..+..... .....     ++..++..+++ .+|+.+..-.|.++....
T Consensus       385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP-~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~  453 (734)
T KOG1061|consen  385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP-NKYES-----VVAILCENLDSLQEPEAKAALIWILGEYAE  453 (734)
T ss_pred             -----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC-Cchhh-----hhhhhcccccccCChHHHHHHHHHHhhhhh
Confidence                 5689999999998877788888888998887632 22222     56667776755 678888888888887654


Q ss_pred             hh
Q 042204          469 VG  470 (559)
Q Consensus       469 ~~  470 (559)
                      .-
T Consensus       454 ~i  455 (734)
T KOG1061|consen  454 RI  455 (734)
T ss_pred             cc
Confidence            43

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.69  E-value=4e-06  Score=88.54  Aligned_cols=354  Identities=14%  Similarity=0.137  Sum_probs=219.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204          103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI  182 (559)
Q Consensus       103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  182 (559)
                      .+++.+.+.|.+.++.|+.-|.+=+... .-..+.--+..++..++++|.+.+ +++|..|.+||+-+++.-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            7888999999999999999988766653 222333334468889999999988 999999999999999744433321  


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh-----hhHhHHHHHHHHHHHhhc
Q 042204          183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH-----AKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       183 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~-----~~~~~~~~a~~~L~nL~~  257 (559)
                        -.+..|+.-+-+.....+..+.-.|......-+..........+.+.+...+.+.     ....++..++-.+..+..
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              2345566554445555555444444333322222223333444555555555321     222355555555555443


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIG  336 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~  336 (559)
                      .....-......++..++.-+.+...-|+..++.+|+.++...+...    -.+++..|..-|..+ .......-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l----y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL----YVELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            33111122445666677777788888999999999999985544221    123566666666554 3333444566777


Q ss_pred             HhhcCChHHHHHHHhCCChHHHHHHh---cCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-------
Q 042204          337 HIVAGDDFQTQCIINCGALPYLLVLL---IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ-------  406 (559)
Q Consensus       337 nl~~~~~~~~~~~~~~g~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~-------  406 (559)
                      .++.........-.+ .+++.+.+..   ... +.++|+....++..+....|..+-..+.. ++..+++.+.       
T Consensus       239 ~i~r~ag~r~~~h~~-~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSHLD-KIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhcccc-hhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCC
Confidence            777644433222222 5677777777   555 78899988888888876555554433321 3333333332       


Q ss_pred             ------------------------cC---ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204          407 ------------------------NA---EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC  459 (559)
Q Consensus       407 ------------------------~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~  459 (559)
                                              ++   ++.||++|+.++..+... ..+....+.+ .+-+.++.-++.....|..-+
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence                                    00   257999999999988874 3455544433 456778888888888888888


Q ss_pred             HHHHHHHHHhhh
Q 042204          460 LKGLENILKVGE  471 (559)
Q Consensus       460 l~~l~~il~~~~  471 (559)
                      ..++..++..-.
T Consensus       394 f~~yi~ll~qt~  405 (1233)
T KOG1824|consen  394 FHAYIALLKQTR  405 (1233)
T ss_pred             HHHHHHHHHcCC
Confidence            888888776533

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=2.2e-05  Score=80.20  Aligned_cols=338  Identities=17%  Similarity=0.183  Sum_probs=210.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHH-HHHHHHHHhcC-Cchh
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE-AAWALTNIASK-TSED  177 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~-a~~~L~nl~~~-~~~~  177 (559)
                      .++.+.+.+.+.+...+..+...+..++.   ...+..+.+.+++..+.+.+.+..+ ..+.+ +..+.-..... .+..
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~  210 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKKS-ALNREAALLAFEAAQGNLGPPF  210 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccch-hhcHHHHHHHHHHHHHhcCCCC
Confidence            45666777777777777788887777643   4556666777888888888877663 33333 33222222221 1111


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      --.++  ..+|.++.-+.+....+|+.|..+.-.+...-+.+.-.    -.+++++.-+.. .....+..++..+..+..
T Consensus       211 EPyiv--~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~-~kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  211 EPYIV--PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLE-AKWRTKMASLELLGAMAD  283 (569)
T ss_pred             CchHH--hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHH-HhhhhHHHHHHHHHHHHH
Confidence            11111  24555555566678889988888777765332221111    134555555523 356777888888998888


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN-DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG  336 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  336 (559)
                      ..|.........++|.+.+.|.+.+++++..+..++..++..-+ ..++     ..+|.|++.+.+++..+ ..++..|+
T Consensus       284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~-~e~~~~L~  357 (569)
T KOG1242|consen  284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYT-PECLDSLG  357 (569)
T ss_pred             hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccch-HHHHHhhc
Confidence            77666666778999999999999999999999999988874322 1122     25688888888776433 23444443


Q ss_pred             HhhcCChHHHHHHHhCCC----hHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHHcCCHHHHHHHhhcCCh
Q 042204          337 HIVAGDDFQTQCIINCGA----LPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVIDAGLIGPLINLLQNAEI  410 (559)
Q Consensus       337 nl~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~~~~i~~Li~lL~~~~~  410 (559)
                      .-..-      ..++.-.    +|.|..-+... +..+++.++.++.|++.  .++..+...+.. ++|.|-..+.+..|
T Consensus       358 ~ttFV------~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~P  429 (569)
T KOG1242|consen  358 ATTFV------AEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVP  429 (569)
T ss_pred             ceeee------eeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCCh
Confidence            22110      0112222    34444455555 67888999999999997  356666665554 77888888888899


Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh-HHHHHHHHHHHHHH
Q 042204          411 NIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP-TIVTVCLKGLENIL  467 (559)
Q Consensus       411 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~-~v~~~~l~~l~~il  467 (559)
                      ++|..+..||+.+.......   .+  .+.++.+.+.+..... .-+..+...+..++
T Consensus       430 EvR~vaarAL~~l~e~~g~~---~f--~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl  482 (569)
T KOG1242|consen  430 EVRAVAARALGALLERLGEV---SF--DDLIPELSETLTSEKSLVDRSGAAQDLSEVL  482 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHhh---cc--cccccHHHHhhccchhhhhhHHHhhhHHHHH
Confidence            99999999999887642211   11  4566666666644322 22333444444444

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.5e-05  Score=71.59  Aligned_cols=343  Identities=14%  Similarity=0.147  Sum_probs=231.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCC---chHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERS---PPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~---~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      ..|.+-.+|..++..++..++..+..++...+.   ..+..+++.++++.++.++...+ .++...|...+..|+. .+.
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpa  160 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPA  160 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHH
Confidence            456667778888888999999999888765321   12566678999999999999888 7999999999999999 788


Q ss_pred             hHHHHHhCCCHHHHH--HhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          177 DTKVVIDHGAVPIFV--KLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~--~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      ....+.++..++.+-  ++-...+.-.|-.....+..|..-+|.....+..+|.+..|..-+....|.-++.+++.....
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            888888887776543  333345566677788888888888888888888999999998888666777788888888888


Q ss_pred             hhcCCCCCcHhhHhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCChh---HHHHHHHh--CcHHHHHHhhCCCCCcc
Q 042204          255 FCRGMPRPIFEQVRPALPVLAQLVHS--NDKEVLTDACWALYFLSNGKND---KIQAVIEA--GVCPRLVELLGHRSSSV  327 (559)
Q Consensus       255 L~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--g~l~~L~~lL~~~~~~v  327 (559)
                      |........+....++++.+..++..  .+|--.-.++...+.+.....-   .-+.+++.  -.++...+.+...++..
T Consensus       241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda  320 (524)
T KOG4413|consen  241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA  320 (524)
T ss_pred             HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence            88766556666667888888888863  3454444455554444321110   00111211  13445566667788889


Q ss_pred             hhhHHHHHHHhhcCChHHHHHHHhCCC--hHHHHHHhcCCCchhHHHHHHHHHHHhhc---CCHHHHH---------HHH
Q 042204          328 LSPALQTIGHIVAGDDFQTQCIINCGA--LPYLLVLLIHSHKKSIKNHACWTISKITA---GNREQIQ---------AVI  393 (559)
Q Consensus       328 ~~~al~~L~nl~~~~~~~~~~~~~~g~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~---------~li  393 (559)
                      +..|..++|.+-+.. +..+.+...|-  ...++.-.-+.....-+..+..+|.+|+.   -.++++.         .++
T Consensus       321 ieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             HHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence            999999999887644 34555555443  33333333333133345667788888875   1232221         111


Q ss_pred             -H-------cCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHH-HHHHHcCChHHHHhc
Q 042204          394 -D-------AGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI-KYLVREKCIKPLCDL  447 (559)
Q Consensus       394 -~-------~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~l~~L~~l  447 (559)
                       +       ..-...+..+++.+.++++..+...+..++..  |... ..+...++++...+-
T Consensus       400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtDa  460 (524)
T KOG4413|consen  400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTDA  460 (524)
T ss_pred             HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeeccc
Confidence             1       13456677788888999999999999999874  3333 334445666554443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.65  E-value=1.3e-06  Score=85.36  Aligned_cols=267  Identities=13%  Similarity=0.081  Sum_probs=177.8

Q ss_pred             HHHHHHHHHhcCCCHHH--HHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204           99 EIFAAMVAGVWSDDNNL--QLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~--~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      +.+..+++++++++.+.  +.++.+.|..+++.   .+++.+...| +..++.+-+....++++...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            56788999999988655  88999999998774   5667777666 455555555444489999999999999999999


Q ss_pred             hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                      ....++..|+++.++-..+..++.+.++|+.+|+|++-+.. ..+..+++..+-.-|..+- .+.|.-++..||.+.+.|
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            99999999999999999998999999999999999985442 3344455555555555554 555777888899999999


Q ss_pred             hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204          256 CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI  335 (559)
Q Consensus       256 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  335 (559)
                      ...+.........+.+...-.++.+-|+.....   --...+.+.        ....+++|+.+|.+...+.+.-+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            988744444344555544445555555532211   000111111        113578899999865443333322222


Q ss_pred             HHhhcC--ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204          336 GHIVAG--DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT  382 (559)
Q Consensus       336 ~nl~~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  382 (559)
                      ..=+.-  ....++.+-+-|.+..|..+..++ +..-.+.|..+|.-|.
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG  451 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG  451 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence            211111  111234455668999999999887 6555555555555553

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.65  E-value=5.1e-06  Score=85.50  Aligned_cols=251  Identities=16%  Similarity=0.111  Sum_probs=152.1

Q ss_pred             hhhHhHHHHHHHHHHHhhcCCCC-CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHH
Q 042204          239 HAKLSMLRTATWTLSNFCRGMPR-PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV  317 (559)
Q Consensus       239 ~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~  317 (559)
                      +.+..++..++-.++.++.--.. ........+=-.|.+.|...+++++-..+.++..+...-.-....-=-.+++|.|.
T Consensus       810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt  889 (1172)
T KOG0213|consen  810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT  889 (1172)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence            34445555555555544432111 11111222223455666778899988877777766632210000000136899999


Q ss_pred             HhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHHc
Q 042204          318 ELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVIDA  395 (559)
Q Consensus       318 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~~  395 (559)
                      .+|++...+|++.++..++.|+...++....---..+---|+++|++. +..+|+.|..+++.|+.  |..+        
T Consensus       890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~IakaIGPqd--------  960 (1172)
T KOG0213|consen  890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAKAIGPQD--------  960 (1172)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhcCHHH--------
Confidence            999999999999999999999986665221000012334577888888 89999999999999986  4333        


Q ss_pred             CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcc
Q 042204          396 GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKN  475 (559)
Q Consensus       396 ~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~  475 (559)
                       ++..|++-|+..+...+.....+|.-.+..+.+-        .+++.|++=-..++..|+.-+|.++.-+|++.....+
T Consensus       961 -VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF--------tVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen  961 -VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF--------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred             -HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch--------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence             4555666666655555544444444444433222        2678888777788888999999999998877544322


Q ss_pred             cccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          476 MDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       476 ~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      .         |.-.+     .+.|+.-..+.+.-=++.|.++|...
T Consensus      1032 d---------Yiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1032 D---------YIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             h---------HHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence            1         22222     35566666666666666666666543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=1.6e-06  Score=92.18  Aligned_cols=254  Identities=16%  Similarity=0.181  Sum_probs=196.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +++|..++.|-|  +.-++.|+..|.+++-.. ...+..-..-|++|.++++|+++. .+++---+.+-+.|..-++.+.
T Consensus       472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            456677776665  456788999999988764 777888889999999999999999 8999999999999988889999


Q ss_pred             HHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          179 KVVIDHGAVPIFVKLLAS---PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                      ..+++.++-..+++.|..   -+++-|..|+..|+.|+..-+.-+...++.+.+..-+..++.+..+-++.-++-+|..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            999999998999988876   24688899999999999887777788888888888888885544566677789999999


Q ss_pred             hcCCCCCcHhh-HhchHHHHHHhhccCCHhHHHHHHHHHHHhccC----ChhHHHHH------------HHhCcH---HH
Q 042204          256 CRGMPRPIFEQ-VRPALPVLAQLVHSNDKEVLTDACWALYFLSNG----KNDKIQAV------------IEAGVC---PR  315 (559)
Q Consensus       256 ~~~~~~~~~~~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~g~l---~~  315 (559)
                      -.+.+...... ...+...|..+|.++-++|+..|+.+|+.+..+    .+++...+            ++.-+.   ..
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            88775444443 367888899999999999999999999998865    23222221            222122   25


Q ss_pred             HHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChH
Q 042204          316 LVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALP  356 (559)
Q Consensus       316 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~  356 (559)
                      ++.+++..++-++.+..-++..++.+.......+.-....+
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~  748 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP  748 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence            66677788888899988889888887766555444333333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=1.4e-06  Score=87.01  Aligned_cols=320  Identities=17%  Similarity=0.084  Sum_probs=205.1

Q ss_pred             HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch
Q 042204          139 IQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR  218 (559)
Q Consensus       139 i~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  218 (559)
                      .-.+++|.++.++.+++ ..+++.|+..|.|++.. ........-..+...+.++..+.+..++. ++..+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            34568999999999998 79999999999999983 22222222334567777777777777765 44455544332211


Q ss_pred             hhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHH
Q 042204          219 CRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYF  295 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  295 (559)
                      -++.   .=-++.++.+|.   ...++..+...+.-+..|-...+..-......+++-|..+|.++.++|+.-+=.+++.
T Consensus       158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            1110   112555555553   3346677777666666665443333333457788999999999999998776666665


Q ss_pred             hcc---CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 042204          296 LSN---GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN  372 (559)
Q Consensus       296 l~~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~  372 (559)
                      ...   .++..   +--...++.++..+.++++.++..|+.-|.-++.-..... ...-+|++..++..+.+.+...++.
T Consensus       235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~  310 (675)
T KOG0212|consen  235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKE  310 (675)
T ss_pred             HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHH
Confidence            541   22211   1122568889999999999999999888887776544332 2334577888888887762334554


Q ss_pred             HHHHHHHHhhc--CCHHHHHHHHHc-CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204          373 HACWTISKITA--GNREQIQAVIDA-GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP  449 (559)
Q Consensus       373 ~a~~~L~nl~~--~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  449 (559)
                      .+...-..+..  +.+...+. ++. .+++.|...+.++..+.|..++.-+..+-.....+...  ....+...|..-|.
T Consensus       311 ~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLs  387 (675)
T KOG0212|consen  311 YAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLS  387 (675)
T ss_pred             HHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhc
Confidence            44332211221  11111111 332 36888888999998999998888887777653322222  23557888999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhhh
Q 042204          450 CANPTIVTVCLKGLENILKVGE  471 (559)
Q Consensus       450 ~~d~~v~~~~l~~l~~il~~~~  471 (559)
                      +.+.+|+..++..+.+++....
T Consensus       388 d~sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  388 DRSDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             CchhHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999986543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.56  E-value=3.9e-06  Score=82.02  Aligned_cols=273  Identities=16%  Similarity=0.162  Sum_probs=183.6

Q ss_pred             HHHHHhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHH
Q 042204          135 IEEVIQSGVVPRFVEFLMREDY-PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNV  212 (559)
Q Consensus       135 ~~~ii~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl  212 (559)
                      .+.+...|++..|++++..++. ..++.+|++.|-.+..  .++++.++..| +..++.+-+ .+.++.++..+..|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            4566678999999999998873 3579999999999987  68888888877 555555544 36788999999999999


Q ss_pred             hCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC-CCcHhhH-hchHHHHHHhhccCCHhHHHHHH
Q 042204          213 AGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP-RPIFEQV-RPALPVLAQLVHSNDKEVLTDAC  290 (559)
Q Consensus       213 ~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~  290 (559)
                      ..++.+....++..|+++.++-.. ...++.+.+.+..+|.|+.-... .....++ ..+-.-|..+-.+.|+-.+.+||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            998888777778889999988777 55679999999999999887652 2222222 33444466666677888899999


Q ss_pred             HHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 042204          291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSI  370 (559)
Q Consensus       291 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v  370 (559)
                      -+++.++...+ .-..+...|-+..+-.++.+-++.--..   --...+.+.        ...-++.|+.+|++. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            99999986544 3345566676666666665555421111   001111111        113477889999877 5555


Q ss_pred             HHHHHHHHHHhhcC-C-HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204          371 KNHACWTISKITAG-N-REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT  424 (559)
Q Consensus       371 ~~~a~~~L~nl~~~-~-~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~  424 (559)
                      +..+++-++.=++- + ......+.+-|.+..|-++.++.|.--.+-|..||.-+-
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            55555444433321 1 111223346688999988888777655555666665543

>TIGR02270 conserved hypothetical protein

Probab=98.54  E-value=2.8e-05  Score=78.68  Aligned_cols=242  Identities=18%  Similarity=0.075  Sum_probs=166.5

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204          100 IFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus       100 ~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .++.++..|. .++......++..+..   .+ .+        ..+..|++.|.+.+ +.++..++.+|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            4566777774 4555555555544432   11 11        13788899998887 7899999999987655      


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                           ....+.|+.+|++.++.++..++.+++..-.            ...+++...| ++.++.++..++.+|..+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 2467888899999999999888877776321            1346777777 588889999999999887653


Q ss_pred             CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                                ..++.|...+.+.++.|+..|++++..+..  ..         .+..+..............+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      355667777889999999999999977742  21         123444433333333333333333333


Q ss_pred             hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204          339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW  418 (559)
Q Consensus       339 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~  418 (559)
                        +.+         .+++.|..+++.+   .++..++++++.+  +++.         .++.|+..+.+.  .++..|.+
T Consensus       237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~l--g~p~---------av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLV--GDVE---------AAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHc--CCcc---------hHHHHHHHhcCc--HHHHHHHH
Confidence              122         4578888888766   3899999999977  4444         677788877654  49999999


Q ss_pred             HHHHHhcC
Q 042204          419 AISNATSG  426 (559)
Q Consensus       419 aL~nl~~~  426 (559)
                      ++..|+--
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99999863

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=8.4e-05  Score=77.49  Aligned_cols=280  Identities=20%  Similarity=0.246  Sum_probs=158.6

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCC
Q 042204          149 EFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA  228 (559)
Q Consensus       149 ~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~  228 (559)
                      ++..+.. +-+|..||.++.++-+-+++....++     ..+-.+|.+.++-|.-.|+.++-.+|-+.-   +.+  ++-
T Consensus       150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn  218 (968)
T KOG1060|consen  150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN  218 (968)
T ss_pred             HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence            4445566 88999999999998887787777554     456667888889999999999988874421   222  234


Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCc----------------------------HhhHhchHHHHHHhhc
Q 042204          229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPI----------------------------FEQVRPALPVLAQLVH  279 (559)
Q Consensus       229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~----------------------------~~~~~~~l~~L~~lL~  279 (559)
                      ...+.++|.+ -+.=-+..++.+|...++.. +.+.                            ..-..-+++..-.+|+
T Consensus       219 yrklC~ll~d-vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~  297 (968)
T KOG1060|consen  219 YRKLCRLLPD-VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ  297 (968)
T ss_pred             HHHHHhhccc-hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence            5666666632 22222333444555555543 2220                            1112335566667888


Q ss_pred             cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHH
Q 042204          280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLL  359 (559)
Q Consensus       280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~  359 (559)
                      +.++.|...++.++++++...  ...     .++..|+.+|.+ +..++.-.+..|..++...+....        |++-
T Consensus       298 S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~--------P~lK  361 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFE--------PHLK  361 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhh--------hhhh
Confidence            999999999999999998433  222     346788888765 455777788888887765543221        3333


Q ss_pred             HHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 042204          360 VLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVRE  438 (559)
Q Consensus       360 ~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  438 (559)
                      ...- +.....++.-=..+|++++..  .++..     +++.|...+.+.|.++...|+.||+.++.... .     +..
T Consensus       362 sFfv~ssDp~~vk~lKleiLs~La~e--sni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~  428 (968)
T KOG1060|consen  362 SFFVRSSDPTQVKILKLEILSNLANE--SNISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTD  428 (968)
T ss_pred             ceEeecCCHHHHHHHHHHHHHHHhhh--ccHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhh
Confidence            3321 120223334444555555431  11111     23344445555555555555555555544210 0     122


Q ss_pred             CChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          439 KCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       439 ~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      .++..|+.++++.|..|+..+.-.|..+++.
T Consensus       429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence            3455555555555555555555555544443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.47  E-value=2.2e-05  Score=84.27  Aligned_cols=384  Identities=15%  Similarity=0.131  Sum_probs=246.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..++.++.....+....++.|...+..+...-..+ .  -....+.+.+++...+.+ ..+++..+.....+...-   .
T Consensus       276 ~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~-~--d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~~---~  348 (759)
T KOG0211|consen  276 EVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD-D--DVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSAV---G  348 (759)
T ss_pred             hccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-h--hhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHHh---c
Confidence            45566666666666677877777777765543222 1  122346788888888888 678777776666655411   1


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCC-CchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD-SPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      ........++....+++....+.+..++.-...++.. +..++..+.....++.+-.++ .+.+..++...+.....+.-
T Consensus       349 ~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p  427 (759)
T KOG0211|consen  349 PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSP  427 (759)
T ss_pred             cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCc
Confidence            1222234567777788777777766655555555422 212223333333444444444 55566666655555444433


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      -.+  ....+...+|.+...+++.++.|+.+..+.+..+-...+..-........++.+..+-....++++...++.+-.
T Consensus       428 ~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~  505 (759)
T KOG0211|consen  428 ILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQ  505 (759)
T ss_pred             cCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHH
Confidence            222  223346678888889999999999999988876654443333344555678888888877788899999988888


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA  417 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~  417 (559)
                      ++....   ..+++...-+.+...+.+. ...+++.|+..+.-++.....   .......++.++.+..+++...|...+
T Consensus       506 la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l  578 (759)
T KOG0211|consen  506 LALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTL  578 (759)
T ss_pred             HHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHH
Confidence            776433   2344444555566666665 678999999888888752111   112223677888887777888999888


Q ss_pred             HHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHH
Q 042204          418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLE  497 (559)
Q Consensus       418 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~  497 (559)
                      .++.-++.....+.    ....+++.+..+..++.+.|+..++..|..+...-...                ..+.-..+
T Consensus       579 ~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----------------~~~~~v~p  638 (759)
T KOG0211|consen  579 FSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----------------VRDEEVLP  638 (759)
T ss_pred             HHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----------------HHHHHHHH
Confidence            88887776443333    33457899999999999999999999999988653321                22333456


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHH
Q 042204          498 KIENLQSHENNEIHEKSVKILE  519 (559)
Q Consensus       498 ~l~~L~~~~~~~v~~~a~~il~  519 (559)
                      .++.|-.+++.+++-+|..+..
T Consensus       639 ll~~L~~d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  639 LLETLSSDQELDVRYRAILAFG  660 (759)
T ss_pred             HHHHhccCcccchhHHHHHHHH
Confidence            7777777777777766654443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=0.00032  Score=72.60  Aligned_cols=274  Identities=15%  Similarity=0.160  Sum_probs=179.5

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL  222 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  222 (559)
                      +-+-++.+|+++- |-+|..|+.+|..+.-..|+..+     ..+|.|..-|.++++.|+..|+..++.+|..+|..  .
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence            4456678888888 89999999999998885555433     46899999999999999999999999999888763  1


Q ss_pred             hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC-HhHHHHHHHHHH--HhccC
Q 042204          223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND-KEVLTDACWALY--FLSNG  299 (559)
Q Consensus       223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~--~l~~~  299 (559)
                      +   ..-|.+..++..+.+.=+....+..+.+|+--.|    ..-..+++.|.+++++.. ..+...++.++.  +++.+
T Consensus       217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence            1   1234455555444444455556666666665433    233567888888887664 334444544442  33333


Q ss_pred             ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204          300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS  379 (559)
Q Consensus       300 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  379 (559)
                      -++... .+. -.++.|-.++.+.++.++.-++-+++.+....+...+..     -+.++..|.+. ++.+|..|...+.
T Consensus       290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence            222211 111 146777788888999999999999999998776554422     35788889888 9999999999998


Q ss_pred             HhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC
Q 042204          380 KITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL  448 (559)
Q Consensus       380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  448 (559)
                      -+..  .+++..+     +..|+.-+... ....+.+.+.-+..+++..+...+.-+-.  .+..|+++.
T Consensus       362 gmVs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW--YlsVlveLa  422 (877)
T KOG1059|consen  362 GMVS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW--YLSVLVELA  422 (877)
T ss_pred             HHhh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHH
Confidence            8853  3444443     44455544433 34677777777777776544433332222  244455543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.46  E-value=4.2e-05  Score=81.12  Aligned_cols=378  Identities=15%  Similarity=0.166  Sum_probs=206.3

Q ss_pred             HHHHhcC--CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          104 MVAGVWS--DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       104 lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      .++.|.+  .|.+++..|..+...++..-. +.... --..++|.|++-|++   +-.|..|+++++-|+...-.....-
T Consensus       573 tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~-eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~  647 (1233)
T KOG1824|consen  573 TLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGN-ELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSP  647 (1233)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhh-hhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhh
Confidence            3344443  456777777777776655321 11110 112356666666654   4678999999999998543333233


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204          182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR-CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~  260 (559)
                      +-..+++.+..++......++..++.++-.+...... ...... .-++..+..++ ...+..+...++.+|..+....|
T Consensus       648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Li-sesdlhvt~~a~~~L~tl~~~~p  725 (1233)
T KOG1824|consen  648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLI-SESDLHVTQLAVAFLTTLAIIQP  725 (1233)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhccc
Confidence            3345788888888877777777777777666532211 001111 11233444445 56677788888888888888876


Q ss_pred             CCcHhhHhchHHHHHHhhccCCHh--HHHHHH--------------------------------------------HHHH
Q 042204          261 RPIFEQVRPALPVLAQLVHSNDKE--VLTDAC--------------------------------------------WALY  294 (559)
Q Consensus       261 ~~~~~~~~~~l~~L~~lL~~~d~~--v~~~a~--------------------------------------------~~L~  294 (559)
                      .........+++.++.+++++--.  ....++                                            .+..
T Consensus       726 s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA  805 (1233)
T KOG1824|consen  726 SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVA  805 (1233)
T ss_pred             HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHH
Confidence            555555566777777766543210  001110                                            0111


Q ss_pred             HhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 042204          295 FLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN  372 (559)
Q Consensus       295 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~  372 (559)
                      .|+...++.     ...+...++.-+.+  .+..++.-|+-.+|.+-.+.+...    ..+....+++.++++ +.+++.
T Consensus       806 ~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp-~edvks  875 (1233)
T KOG1824|consen  806 ALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSP-SEDVKS  875 (1233)
T ss_pred             HHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCC-hHHHHH
Confidence            111000000     00112223322332  345677778888887776544221    124455788889999 999999


Q ss_pred             HHHHHHHHhhcCCHHH-HHHHHH---------cCCHHHHHHHhhcCC-----------------------hhHHHHHHHH
Q 042204          373 HACWTISKITAGNREQ-IQAVID---------AGLIGPLINLLQNAE-----------------------INIKNWAAWA  419 (559)
Q Consensus       373 ~a~~~L~nl~~~~~~~-~~~li~---------~~~i~~Li~lL~~~~-----------------------~~v~~~a~~a  419 (559)
                      .|..+|++++.|+-+. +..+.+         .=++..|...+....                       ...|.-.+.+
T Consensus       876 AAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAEC  955 (1233)
T KOG1824|consen  876 AASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAEC  955 (1233)
T ss_pred             HHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHH
Confidence            9999999999875432 222211         001223333332222                       2233334444


Q ss_pred             HHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHH
Q 042204          420 ISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKI  499 (559)
Q Consensus       420 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l  499 (559)
                      |+.++.. +|+        .+++.|-..+.++++..+..++.++.-.+....            .+.-..+.  ..+...
T Consensus       956 LGkL~l~-epe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p------------~~id~~lk--~~ig~f 1012 (1233)
T KOG1824|consen  956 LGKLVLI-EPE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP------------QPIDPLLK--QQIGDF 1012 (1233)
T ss_pred             hhhHHhC-ChH--------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCC------------CccCHHHH--HHHHHH
Confidence            4444433 222        256777778888888888888777654432211            11111111  113455


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhh
Q 042204          500 ENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       500 ~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      ..+..+++.+|++.|...+...
T Consensus      1013 l~~~~dpDl~VrrvaLvv~nSa 1034 (1233)
T KOG1824|consen 1013 LKLLRDPDLEVRRVALVVLNSA 1034 (1233)
T ss_pred             HHHHhCCchhHHHHHHHHHHHH
Confidence            5677888899998888777653

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=1.5e-06  Score=86.22  Aligned_cols=306  Identities=15%  Similarity=0.208  Sum_probs=201.2

Q ss_pred             HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh
Q 042204          114 NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL  193 (559)
Q Consensus       114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l  193 (559)
                      +.+..|...+-+-+++...-.+.-+.+..+++.|+++|+.++ ..+..-+...++|..-..+.-+..+.+.|++..|+++
T Consensus       403 ~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~  481 (743)
T COG5369         403 DLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL  481 (743)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence            344444433333334322233445556778999999999988 6888888889999888788889999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCCchh-hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC--CcHhhH---
Q 042204          194 LASPNDDIREQAVWALGNVAGDSPRC-RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR--PIFEQV---  267 (559)
Q Consensus       194 L~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~---  267 (559)
                      +.+.+..+|....|.+..+....... +=..+..-++..++... +++...++..++..|.|+..+...  ......   
T Consensus       482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~  560 (743)
T COG5369         482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA  560 (743)
T ss_pred             hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEec
Confidence            99999999999999999987544332 22344555688888888 777888999999999999874421  111111   


Q ss_pred             ---hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC-----------CCCcchhhHH
Q 042204          268 ---RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH-----------RSSSVLSPAL  332 (559)
Q Consensus       268 ---~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~-----------~~~~v~~~al  332 (559)
                         .-....+++-+...+|-.....|..|.+++..++...+.+.+. .++..+.++|..           .+..+..+-.
T Consensus       561 ~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s  640 (743)
T COG5369         561 TPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPIS  640 (743)
T ss_pred             ChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccc
Confidence               2245566677777777777777888888886666655555443 444444444421           1223444445


Q ss_pred             HHHHHhhcCChHHHHHHHhCCChHHHHHHhc--CCCchhHHHHHHHHHHHhhc---CC------HHHHHHHHHcCCHHHH
Q 042204          333 QTIGHIVAGDDFQTQCIINCGALPYLLVLLI--HSHKKSIKNHACWTISKITA---GN------REQIQAVIDAGLIGPL  401 (559)
Q Consensus       333 ~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~---~~------~~~~~~li~~~~i~~L  401 (559)
                      .+..++....+.....+.-.   |.+-.+=.  ...+.++-.+..|.+.|+..   ++      .+.++.+.+.|+-+.|
T Consensus       641 ~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l  717 (743)
T COG5369         641 YTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWL  717 (743)
T ss_pred             eeeecccccccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHH
Confidence            55555555433222211100   22211111  11145577788899888754   22      3666777788888888


Q ss_pred             HHHhhcCChhHHHHHHHHHHHHh
Q 042204          402 INLLQNAEINIKNWAAWAISNAT  424 (559)
Q Consensus       402 i~lL~~~~~~v~~~a~~aL~nl~  424 (559)
                      ..+-.++++.+++.+-.||.++-
T Consensus       718 ~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         718 VKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HHHhccCcHHHHHHHHHHHHhhh
Confidence            88777888899999999998863

>PF05536 Neurochondrin: Neurochondrin

Probab=98.42  E-value=0.00047  Score=72.80  Aligned_cols=238  Identities=16%  Similarity=0.121  Sum_probs=164.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch--HHHHHhcCcHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED------YPQLQYEAAWALTNI  170 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g~v~~Lv~lL~~~~------~~~~~~~a~~~L~nl  170 (559)
                      ..+.+.++.|++.+.+.++.++-.+.+++.......  .+.+.++=+.+.+-++|.+..      ....+.-|+.+|...
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            467889999999998899999999999877542212  335677777788888888722      156788888899998


Q ss_pred             hcCCchhHHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHH
Q 042204          171 ASKTSEDTKVVIDHGAVPIFVKLLASPND-DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT  249 (559)
Q Consensus       171 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~  249 (559)
                      +. .++....---.+-||.|+..+.+.+. .+...|..+|..++ ..+.-+..+.+.|+++.|...+.+  .+.....++
T Consensus        85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al  160 (543)
T PF05536_consen   85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL  160 (543)
T ss_pred             cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence            88 55554222222579999999987666 99999999999999 445668888899999999999844  445677788


Q ss_pred             HHHHHhhcCCCCC----cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhH-HHHHHHhC----cHHHHHHhh
Q 042204          250 WTLSNFCRGMPRP----IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK-IQAVIEAG----VCPRLVELL  320 (559)
Q Consensus       250 ~~L~nL~~~~~~~----~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~-~~~~~~~g----~l~~L~~lL  320 (559)
                      .++.+++......    .......+++.+...+..........+|..|..+....+.. .+......    +..-+..+|
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            8888877654311    12223455666777776666777788888888887555311 11112222    334445555


Q ss_pred             CCC-CCcchhhHHHHHHHhhc
Q 042204          321 GHR-SSSVLSPALQTIGHIVA  340 (559)
Q Consensus       321 ~~~-~~~v~~~al~~L~nl~~  340 (559)
                      .+. .+.-|.+++...+.+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            553 45567777777766654

>TIGR02270 conserved hypothetical protein

Probab=98.41  E-value=6.2e-05  Score=76.19  Aligned_cols=241  Identities=17%  Similarity=0.012  Sum_probs=169.0

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL  222 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  222 (559)
                      .++.++..|...+.+.++..+++++.....  +         .++..|+..|.+.++.++..++.+|+.+-.        
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------
Confidence            678888888544437888877766643222  1         137899999999999999999999997621        


Q ss_pred             hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh
Q 042204          223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND  302 (559)
Q Consensus       223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~  302 (559)
                         ......|+..+ .+.++.++..++.++....           ....+.+..+|++.++.|+..++.+|+.+-..   
T Consensus       116 ---~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       116 ---RQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             ---hHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence               12457788888 6778888888776666522           12356788889999999999999999998732   


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204          303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT  382 (559)
Q Consensus       303 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  382 (559)
                              ..++.|...+.+.++.|+..|+..++.+-.  +         ..+..+....... .......+..++... 
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~-  236 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA-  236 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence                    235667778999999999999999977633  2         1234555544433 333444444444333 


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHH
Q 042204          383 AGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKG  462 (559)
Q Consensus       383 ~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~  462 (559)
                       +++         ..++.|..+++++.  ++..++++++.+-..            ..++.|+..+...  .+...+-++
T Consensus       237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~--~~aR~A~eA  290 (410)
T TIGR02270       237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREP--PWARLAGEA  290 (410)
T ss_pred             -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCc--HHHHHHHHH
Confidence             333         26777888887654  899999999976542            2577777777543  388999999


Q ss_pred             HHHHH
Q 042204          463 LENIL  467 (559)
Q Consensus       463 l~~il  467 (559)
                      +..|.
T Consensus       291 ~~~It  295 (410)
T TIGR02270       291 FSLIT  295 (410)
T ss_pred             HHHhh
Confidence            99987

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.40  E-value=2.6e-05  Score=78.92  Aligned_cols=336  Identities=15%  Similarity=0.139  Sum_probs=201.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-CchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~-~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      ..+..+++.|++..+..+..|+.....+..--+ -.....+...|.  .|.+-|.... |++.-..+.++..|.+.. ..
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~-~~  679 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVH-RF  679 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhh-cc
Confidence            467788889999999999988876665432110 122333444443  3566777666 888777777777766521 11


Q ss_pred             H-HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh---hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204          178 T-KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC---RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS  253 (559)
Q Consensus       178 ~-~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~  253 (559)
                      + ..---.|++|.|...|.+.+..+..+.+..++.||..+|++   |+...   +--.|+..| .+.+.+++++|..++.
T Consensus       680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG  755 (975)
T COG5181         680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFG  755 (975)
T ss_pred             cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhh
Confidence            1 11112589999999999999999999999999999887763   22211   123466677 6678899999999999


Q ss_pred             HhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204          254 NFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ  333 (559)
Q Consensus       254 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  333 (559)
                      .+++.-      --..++..|+.-|+..+...+....-+++-.+......       .++|.|+.=-..++..|+.-.++
T Consensus       756 ~Is~ai------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TPe~nVQnGvLk  822 (975)
T COG5181         756 CISRAI------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETPEANVQNGVLK  822 (975)
T ss_pred             hHHhhc------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCchhHHHHhHHH
Confidence            888753      11345555665555554444444444444333222211       34566666556677889988999


Q ss_pred             HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH--HHHHHHcCCHHHHHHHhhcCChh
Q 042204          334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ--IQAVIDAGLIGPLINLLQNAEIN  411 (559)
Q Consensus       334 ~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~li~~~~i~~Li~lL~~~~~~  411 (559)
                      +++-+...-.+.....+ ..+.|.|-+.|.+. ++.-|..|...+..++.+.+..  ....+.  ++..|..-+-.+.+.
T Consensus       823 am~fmFeyig~~s~dYv-y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPh  898 (975)
T COG5181         823 AMCFMFEYIGQASLDYV-YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPH  898 (975)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcH
Confidence            98887764433222121 14677888888888 8999999999999997642211  111111  122222222345666


Q ss_pred             HHHHHHHHHHHHhcCC-CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          412 IKNWAAWAISNATSGG-SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       412 v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ++......+-.++..- ......| +.+|        |-++...|+. ..|...+++..
T Consensus       899 vi~~~~Eg~e~~~~~lg~g~~m~Y-v~qG--------LFHPs~~VRk-~ywtvyn~myv  947 (975)
T COG5181         899 VIQSFDEGMESFATVLGSGAMMKY-VQQG--------LFHPSSTVRK-RYWTVYNIMYV  947 (975)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHH-HHHh--------ccCchHHHHH-HHHHHHhhhhh
Confidence            6655544444443321 1122233 3333        4466666554 45555565544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.00014  Score=75.94  Aligned_cols=168  Identities=17%  Similarity=0.198  Sum_probs=121.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      ..|.++|.|.....+++|+..+..+.....+  .     +..+|.+|+...+.+ ++++...---|...|...++-.-  
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLAL--  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLAL--  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCcee--
Confidence            4678889999999999999888877665422  2     236799999999888 89999888888888885544221  


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHH----HHhchhhhHhHHHHHHHHHHHhhc
Q 042204          182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLL----AQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll----~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                         =-|..+-+-|+++++.+|..|+++|+.|--       -+     +.|++    +....+..+-+++.|+.++-.|-+
T Consensus       108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~-----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs  172 (968)
T KOG1060|consen  108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV-------PM-----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS  172 (968)
T ss_pred             ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hh-----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc
Confidence               136788889999999999999999988721       11     22221    222256678889999999988877


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN  298 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  298 (559)
                      -.+...    ..++..+-.+|.+.++-|.-.|+.++-.+|-
T Consensus       173 Ld~e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCP  209 (968)
T KOG1060|consen  173 LDPEQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCP  209 (968)
T ss_pred             CChhhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence            654332    2455666677788888888888888777663

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=9.3e-05  Score=69.15  Aligned_cols=269  Identities=16%  Similarity=0.150  Sum_probs=165.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH--hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204          144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI--DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD  221 (559)
Q Consensus       144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  221 (559)
                      ...++.++.+.+ |.++..|...+..++..   .-+.+.  +.-.++.+.+++....+  .+.|+.+|.|++.+ +..|.
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHH
Confidence            356789999999 99999999999998885   112221  23467888899887666  78899999999866 44566


Q ss_pred             hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH--h----chHHHHHHhhccCC---HhHHHHHHHH
Q 042204          222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV--R----PALPVLAQLVHSND---KEVLTDACWA  292 (559)
Q Consensus       222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~--~----~~l~~L~~lL~~~d---~~v~~~a~~~  292 (559)
                      .++.. .+..++..+ .+........+|..|+|+++..........  .    ..+..++...-+.+   ..-..+....
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            66654 555666666 444456778889999999987632221111  1    33333333332221   2234566677


Q ss_pred             HHHhccCChhHHHHHHHhCcH--HHHHHhhCCCCCcchh-hHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCC--
Q 042204          293 LYFLSNGKNDKIQAVIEAGVC--PRLVELLGHRSSSVLS-PALQTIGHIVAGDDFQTQCIINC--GALPYLLVLLIHS--  365 (559)
Q Consensus       293 L~~l~~~~~~~~~~~~~~g~l--~~L~~lL~~~~~~v~~-~al~~L~nl~~~~~~~~~~~~~~--g~l~~L~~lL~~~--  365 (559)
                      +.|++.....+ ..+.+...+  +.+..+- +.+..+|. ..+.+|.|+|.....+- .+++.  .+++.++-=|-.+  
T Consensus       156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft-~~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFT-SEDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHhhhhhhh-hHhcchhhhhHhhhhccc-ccchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccc
Confidence            88888655443 234443322  2333333 34445544 47889999887655443 23332  2333333222111  


Q ss_pred             -----------------------CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHH
Q 042204          366 -----------------------HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAIS  421 (559)
Q Consensus       366 -----------------------~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~  421 (559)
                                             +++.+|+.-.-+|.-+|+ +...++.+.+.|+.+.+-.+-+.. +++++ .++.-+.
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vv  310 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVV  310 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHH
Confidence                                   278899999999998886 356677888888888777766554 44554 4555555


Q ss_pred             HHhcC
Q 042204          422 NATSG  426 (559)
Q Consensus       422 nl~~~  426 (559)
                      ++...
T Consensus       311 q~Lv~  315 (353)
T KOG2973|consen  311 QMLVR  315 (353)
T ss_pred             HHHHh
Confidence            55544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=7.1e-06  Score=83.62  Aligned_cols=219  Identities=13%  Similarity=0.091  Sum_probs=147.7

Q ss_pred             HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC---h--hHH-H
Q 042204          232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK---N--DKI-Q  305 (559)
Q Consensus       232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~---~--~~~-~  305 (559)
                      +..+. .+.+..++..|+.+|..|..+.     ....-+....++++.+++..|+..|+..++......   .  +.- .
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            44444 6667788888888888777643     122345667788899999999998866655444221   1  111 1


Q ss_pred             HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh--hc
Q 042204          306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI--TA  383 (559)
Q Consensus       306 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~  383 (559)
                      .+.+ .++..+...+.+.+..||..|..+||.+-.-+++..+..++..++..+-..=.      -.+......++-  ++
T Consensus       277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~------ahkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT------AHKRPKALYSSGEWSS  349 (823)
T ss_pred             hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh------cccchHHHHhcCCccc
Confidence            2222 46788999999999999999999999998877766665555433332211110      011111122221  11


Q ss_pred             -----------CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 042204          384 -----------GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN  452 (559)
Q Consensus       384 -----------~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d  452 (559)
                                 ...+.-..++..|..-.++.-|.++-.+||+.|+..++.++.. .|.....     .+..|+++++++.
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHH
Confidence                       1223345677888888889888888889999999999999985 3444333     6889999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 042204          453 PTIVTVCLKGLENILKV  469 (559)
Q Consensus       453 ~~v~~~~l~~l~~il~~  469 (559)
                      ..|+..++.+|..|...
T Consensus       424 ~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988765

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.35  E-value=0.00022  Score=71.43  Aligned_cols=251  Identities=27%  Similarity=0.306  Sum_probs=173.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..++.+++.+.+.+...+..++..+..+-..            -.+|.+..++.+.+ +.+|..|+.+|+.+-..     
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~-----  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP-----  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh-----
Confidence            3678899999999999999999987775332            27899999999999 89999999988887762     


Q ss_pred             HHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhh-----------HhHHH
Q 042204          179 KVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAK-----------LSMLR  246 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~-----------~~~~~  246 (559)
                            ..++.|+.++. +++..+|..|.++|+.+-..           ..+.+++..+.....           ..++.
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                  46889999998 59999999999999998321           136777777743221           12344


Q ss_pred             HHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCc
Q 042204          247 TATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSS  326 (559)
Q Consensus       247 ~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~  326 (559)
                      .+...+..+-.          ...++.+...+.+.+..++..+..+|+.+....         ..+.+.+...+.+.+..
T Consensus       168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            44444444432          335667778888888888888888888887543         23457788888888888


Q ss_pred             chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh
Q 042204          327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ  406 (559)
Q Consensus       327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~  406 (559)
                      ++..++..++.+-...           ....+...+... +..++..+...+...  ...         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDEE-----------AVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcch-----------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence            8888888888765422           245666677666 555555554444311  111         12334455556


Q ss_pred             cCChhHHHHHHHHHHHHhcC
Q 042204          407 NAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       407 ~~~~~v~~~a~~aL~nl~~~  426 (559)
                      +.+..++..+..++..+...
T Consensus       286 ~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         286 DEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             cchhhHHHHHHHHHHhhccc
Confidence            66677777777777766553

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=0.00017  Score=67.86  Aligned_cols=300  Identities=13%  Similarity=0.130  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHH--HHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204           98 LEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRF--VEFLMREDYPQLQYEAAWALTNIASKTS  175 (559)
Q Consensus        98 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~L--v~lL~~~~~~~~~~~a~~~L~nl~~~~~  175 (559)
                      -+.++.++..+..+|.++-..|...+.++...  +.....+.++.....+  ..+-...+ .-.|......+..|.+-++
T Consensus       127 aeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSp  203 (524)
T KOG4413|consen  127 AEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISP  203 (524)
T ss_pred             hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCH
Confidence            36788899999999999888888999887544  4556666666655543  33333333 4778888899999999999


Q ss_pred             hhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-hHhHHHHHHHHHH
Q 042204          176 EDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-KLSMLRTATWTLS  253 (559)
Q Consensus       176 ~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-~~~~~~~a~~~L~  253 (559)
                      +.....-.+|.+..|..=|+. .+.-++..++.....++.... .|+.+...|.++.+.+.+.... ++--.-.++....
T Consensus       204 esaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfg  282 (524)
T KOG4413|consen  204 ESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFG  282 (524)
T ss_pred             HHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH
Confidence            999999999999999988876 777788888888888875433 4778888899998888884222 2211111332333


Q ss_pred             Hhhc----CC--CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCc--HHHHHHhhCC-CC
Q 042204          254 NFCR----GM--PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGV--CPRLVELLGH-RS  324 (559)
Q Consensus       254 nL~~----~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~--l~~L~~lL~~-~~  324 (559)
                      .+..    .+  +..........+....+.+..+|+..+..|+.+++.+..+.. ..+.+...|-  ..+++....+ +.
T Consensus       283 kffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdqna  361 (524)
T KOG4413|consen  283 KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNA  361 (524)
T ss_pred             HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccc
Confidence            3222    21  111111122334445566778999999999999999985544 3455666553  4444444444 34


Q ss_pred             CcchhhHHHHHHHhhcCC---hHH----------HHHHHh-------CCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC
Q 042204          325 SSVLSPALQTIGHIVAGD---DFQ----------TQCIIN-------CGALPYLLVLLIHSHKKSIKNHACWTISKITAG  384 (559)
Q Consensus       325 ~~v~~~al~~L~nl~~~~---~~~----------~~~~~~-------~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  384 (559)
                      ..-+..++++|.+|+...   +++          +..+.+       ..-+..+..+++.+ .++++..+..++..|++.
T Consensus       362 hakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaq  440 (524)
T KOG4413|consen  362 HAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQ  440 (524)
T ss_pred             cchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcC
Confidence            456778899999998632   111          111111       13356678888888 999999999999999765


Q ss_pred             CHHHHHHHHHcCCHHHHHH
Q 042204          385 NREQIQAVIDAGLIGPLIN  403 (559)
Q Consensus       385 ~~~~~~~li~~~~i~~Li~  403 (559)
                      .=.+...+...++++.+.+
T Consensus       441 PWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  441 PWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             cHHHHHHhcCccceeeecc
Confidence            3333333335566655544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=0.00058  Score=73.40  Aligned_cols=303  Identities=14%  Similarity=0.196  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204           98 LEIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        98 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      ++.++-+...|.+ .++.++..|+..+..+.+.  .+....+...|++..|+.+|.+.  |..|..++.+|..+++ +++
T Consensus      1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred             hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence            4555666666664 5678888899888887665  78899999999999999998764  6999999999999999 788


Q ss_pred             hHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCC---chhhhhhhcc----------CCHHHHHHHhchh-hh
Q 042204          177 DTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDS---PRCRDLVLSE----------EALIPLLAQLNEH-AK  241 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~---~~~r~~i~~~----------g~l~~Ll~ll~~~-~~  241 (559)
                      ......+.|++..+..++- +.++..|.+++..|+.+..+.   |..+-.+++.          +.-...+..+... .+
T Consensus      1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred             HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence            8888888999888887765 577889999999999997543   2222111110          0112222222110 11


Q ss_pred             H------hHHHHHHHHHHHhh----cCC---C--------------------------------------CCcHhhHhch
Q 042204          242 L------SMLRTATWTLSNFC----RGM---P--------------------------------------RPIFEQVRPA  270 (559)
Q Consensus       242 ~------~~~~~a~~~L~nL~----~~~---~--------------------------------------~~~~~~~~~~  270 (559)
                      +      ..+......+..+.    +..   |                                      ........++
T Consensus      1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence            1      11222222222221    100   0                                      0011222445


Q ss_pred             HHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHH
Q 042204          271 LPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQC  348 (559)
Q Consensus       271 l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~  348 (559)
                      +..+.+++..++  .....-.-.++..|....+.....+-..|.+|.++.-+...+..+-..|++.|-.++.+. -..+.
T Consensus      2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~A 2083 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDA 2083 (2235)
T ss_pred             HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHH
Confidence            555566665333  222333333444445555555566666799999999999988888899999999998744 45566


Q ss_pred             HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcC
Q 042204          349 IINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNA  408 (559)
Q Consensus       349 ~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~  408 (559)
                      +.....+..++..++..  +..---|+.+|-.+.. ...+.+...++.|++|.|+.+|...
T Consensus      2084 MA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            66666667777777654  3334467777777765 4566677778999999999999754

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=0.00036  Score=70.39  Aligned_cols=293  Identities=14%  Similarity=0.119  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhC---CCchhhhhhhccCCHHHHH
Q 042204          157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAG---DSPRCRDLVLSEEALIPLL  233 (559)
Q Consensus       157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~r~~i~~~g~l~~Ll  233 (559)
                      |..|...+.-|.-+-+ .|...-.-.-...++.|.++|.+++++++..+-.+|+++-.   .+|..   +-....++.++
T Consensus       181 ~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv  256 (675)
T KOG0212|consen  181 PMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLV  256 (675)
T ss_pred             chHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhcc
Confidence            6666666666665554 23222111123567888899999999999888887777642   22321   11223566777


Q ss_pred             HHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHh-HHHHHHHH---HHHhccCChhHHHHHHH
Q 042204          234 AQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKE-VLTDACWA---LYFLSNGKNDKIQAVIE  309 (559)
Q Consensus       234 ~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~---L~~l~~~~~~~~~~~~~  309 (559)
                      ..+ +++++.++..|+.-+..+..-.+..-.....+++..+++++.++++. +...+...   +..+....... +. ++
T Consensus       257 ~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~-~~-id  333 (675)
T KOG0212|consen  257 PHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK-EE-ID  333 (675)
T ss_pred             ccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc-cc-cc
Confidence            777 66777787777666666666555555666788888888888776653 33333222   22232211111 11 33


Q ss_pred             h-CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH
Q 042204          310 A-GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ  388 (559)
Q Consensus       310 ~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  388 (559)
                      . .++..+...+.++....+..++.-+..+-...+.+. .+....+.+.|+.-|.++ +..+...+...++++|......
T Consensus       334 ~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~~~  411 (675)
T KOG0212|consen  334 YGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSNSP  411 (675)
T ss_pred             hHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCcccc
Confidence            2 367888889999999999999988888776655443 344557888999999888 8899999999999998742221


Q ss_pred             HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHH
Q 042204          389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENIL  467 (559)
Q Consensus       389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il  467 (559)
                        .+.  .++..|+++...+..-+...+...+..++.--+++.+        ...+..+|.. ++-+.......+|..++
T Consensus       412 --~~~--~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~I--------Yr~~a~ILe~e~nl~FAstMV~~Ln~iL  479 (675)
T KOG0212|consen  412 --NLR--KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERI--------YRSIADILEREENLKFASTMVQALNTIL  479 (675)
T ss_pred             --cHH--HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHH--------HHHHHHHHhccccchHHHHHHHHHHhhh
Confidence              011  1334455555555555666777777777765555653        3445555544 44555555666666665


Q ss_pred             Hhh
Q 042204          468 KVG  470 (559)
Q Consensus       468 ~~~  470 (559)
                      --+
T Consensus       480 lTS  482 (675)
T KOG0212|consen  480 LTS  482 (675)
T ss_pred             ccc
Confidence            433

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.30  E-value=1.3e-06  Score=57.32  Aligned_cols=40  Identities=40%  Similarity=0.906  Sum_probs=38.1

Q ss_pred             CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 042204          174 TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA  213 (559)
Q Consensus       174 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  213 (559)
                      ++++++.+++.|++|.|+++|.++++++++.|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=0.00019  Score=67.11  Aligned_cols=272  Identities=13%  Similarity=0.150  Sum_probs=168.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+..++..+.+.++.++..|+..+..+...  .-..-.--+.-.++.+.+++...+ +  ...|+.+|.|++. +...+.
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~   77 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRK   77 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHH
Confidence            346789999999999999999888886544  111111112346788899998877 4  6789999999999 788888


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc-----CCHHHHHHHhch-hhh-HhHHHHHHHHH
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE-----EALIPLLAQLNE-HAK-LSMLRTATWTL  252 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-----g~l~~Ll~ll~~-~~~-~~~~~~a~~~L  252 (559)
                      .+++. .+..+...+.++...+.+..+..|.|++.+...++......     ..+..++..+.+ +.+ ..-.......+
T Consensus        78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            88877 77777888888877788889999999998876655443221     123333333322 222 12344566778


Q ss_pred             HHhhcCCCCCcHhhHhchH--HHHHHhhccCCHhHH-HHHHHHHHHhccCChhHHHHHHHh--CcHHHHH----------
Q 042204          253 SNFCRGMPRPIFEQVRPAL--PVLAQLVHSNDKEVL-TDACWALYFLSNGKNDKIQAVIEA--GVCPRLV----------  317 (559)
Q Consensus       253 ~nL~~~~~~~~~~~~~~~l--~~L~~lL~~~d~~v~-~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L~----------  317 (559)
                      +||++....+........+  +.+..+-. .+..++ ...+.+|.|.|.....+ ..+++.  .+++.|.          
T Consensus       157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~s  234 (353)
T KOG2973|consen  157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELS  234 (353)
T ss_pred             HHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccC
Confidence            8888765333333332222  23444333 455554 45677788877443322 233332  2333322          


Q ss_pred             -----------HhhC-----CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204          318 -----------ELLG-----HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI  381 (559)
Q Consensus       318 -----------~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl  381 (559)
                                 ++|.     .+++.++..-+.+|.-++.. ...++.+.+.|+.+.+-.+=+..+++++++..-.....+
T Consensus       235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~L  313 (353)
T KOG2973|consen  235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQML  313 (353)
T ss_pred             HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                       2221     14566888889999888874 445567778788877777666654666665444444333

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.30  E-value=0.00029  Score=70.61  Aligned_cols=249  Identities=24%  Similarity=0.300  Sum_probs=169.1

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204          142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD  221 (559)
Q Consensus       142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  221 (559)
                      ..++.+++++.+.+ +.++..|++.++.+..           .-+++.+..++.+.++.+|..|+.+|+.+-.  +    
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--P----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h----
Confidence            36788999999987 8999999999877766           2478999999999999999999999998721  1    


Q ss_pred             hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCH------------hHHHHH
Q 042204          222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK------------EVLTDA  289 (559)
Q Consensus       222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~------------~v~~~a  289 (559)
                           ..+++++..+..+.+..++..+.++|..+-...          .+..++..+.+...            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 147889999955788899999999999886542          35556666665542            234444


Q ss_pred             HHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 042204          290 CWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKS  369 (559)
Q Consensus       290 ~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~  369 (559)
                      ..+++.+-+           ...++.+...+.+....++..|..+|+.+....         ..+.+.+...+.++ +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            444443321           124577777788777788888888888877654         23456677777777 888


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204          370 IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP  449 (559)
Q Consensus       370 v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  449 (559)
                      +|..++.+++.+-.  ..         .++.++..+.+.+..++..+..++...-   ..         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~--~~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGD--EE---------AVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCc--ch---------hHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHhh
Confidence            88888888877632  22         4556667777777666655555554110   00         12334444455


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 042204          450 CANPTIVTVCLKGLENIL  467 (559)
Q Consensus       450 ~~d~~v~~~~l~~l~~il  467 (559)
                      +.+..++......+..+.
T Consensus       286 ~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         286 DEANAVRLEAALALGQIG  303 (335)
T ss_pred             cchhhHHHHHHHHHHhhc
Confidence            556665555555555433

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=3.8e-05  Score=78.46  Aligned_cols=252  Identities=15%  Similarity=0.124  Sum_probs=162.4

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHH---HHHHHhhcCC---CCC
Q 042204          189 IFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT---WTLSNFCRGM---PRP  262 (559)
Q Consensus       189 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~---~~L~nL~~~~---~~~  262 (559)
                      -|..+..+.+..|+.+|+.+|..+... .....     -.....+.++ .+.+..++..|+   |.+.|.+-..   ...
T Consensus       202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~-----~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  202 GLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSK-----ACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhccc-ccccH-----HHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            366666677777777777777776542 11111     1245566666 666778888874   5555555222   122


Q ss_pred             cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-
Q 042204          263 IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG-  341 (559)
Q Consensus       263 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~-  341 (559)
                      .......++..+...+.+-...|+..|..+|+.+-..+.+.++..++..++..+-..-..   .-+-..+..=|-.++| 
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a---hkrpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA---HKRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc---ccchHHHHhcCCcccCc
Confidence            233446677788888888889999999999999887777777766665555432221100   0011112221211111 


Q ss_pred             ----------ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChh
Q 042204          342 ----------DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEIN  411 (559)
Q Consensus       342 ----------~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~  411 (559)
                                .++....++.+|+-..++.-|.+. -.+||+.|...++.++..+|.....     .+..|++++.++..+
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence                      233445678889999999999887 8899999999999998866654433     466899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204          412 IKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL  463 (559)
Q Consensus       412 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l  463 (559)
                      ||..|+.+|..++.+..       ++...++.++..|.+..+++++...+.|
T Consensus       426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL  470 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELL  470 (823)
T ss_pred             HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999887531       2223455566666666666665544444

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.0014  Score=67.95  Aligned_cols=324  Identities=19%  Similarity=0.164  Sum_probs=194.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 042204          103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI  182 (559)
Q Consensus       103 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  182 (559)
                      +.++.|.+.--..+.-+.-.+.-++.. +.+..+.     ++..+.+=|.+.+ +..+..|+.+++|+.+  .+.+..+.
T Consensus        78 EaV~LLss~kysEKqIGYl~is~L~n~-n~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~  148 (938)
T KOG1077|consen   78 EAVNLLSSNKYSEKQIGYLFISLLLNE-NSDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA  148 (938)
T ss_pred             HHHHHhhcCCccHHHHhHHHHHHHHhc-chHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh
Confidence            445666665444444444444443332 2333333     3344555566666 7889999999999987  45555443


Q ss_pred             hCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204          183 DHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       183 ~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~  260 (559)
                      .  -|+   ++|-+  ..+-++..|+.+|..+-..+|.   .+-..+....++.+| .+.+..+...+...+.-|+...|
T Consensus       149 ~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p  219 (938)
T KOG1077|consen  149 D--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNP  219 (938)
T ss_pred             h--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCC
Confidence            2  233   45544  3467888899999998877664   333445678888888 55567777777777777777665


Q ss_pred             CCcHhhHhchHHHHHHhhc-------------cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CC
Q 042204          261 RPIFEQVRPALPVLAQLVH-------------SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SS  325 (559)
Q Consensus       261 ~~~~~~~~~~l~~L~~lL~-------------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~  325 (559)
                      ..-...+..++..|..+..             -+.|.+...++++|.+.-.-.+.-. ...-..+++.++.....+  ..
T Consensus       220 ~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~-r~~l~evl~~iLnk~~~~~~~k  298 (938)
T KOG1077|consen  220 ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPST-RARLNEVLERILNKAQEPPKSK  298 (938)
T ss_pred             HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchH-HHHHHHHHHHHHhccccCcccc
Confidence            4433333334433333321             1357888999999988753222111 111112445555544421  11


Q ss_pred             cc-----hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHH
Q 042204          326 SV-----LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGP  400 (559)
Q Consensus       326 ~v-----~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~  400 (559)
                      .+     +...+.-.-+++..-+..-+.+.  ..+..|-++|.+. ...+|.-|...++.++.. ...+..+-.+  .+.
T Consensus       299 ~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~  372 (938)
T KOG1077|consen  299 KVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASS-EFSIDAVKKH--QDT  372 (938)
T ss_pred             chHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhc-cchHHHHHHH--HHH
Confidence            12     22233333344433332222222  4577888999988 889999999999988764 2223333333  677


Q ss_pred             HHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204          401 LINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC  459 (559)
Q Consensus       401 Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~  459 (559)
                      ++..|+ ..|..+++.|+..|..++...   +.+.     ++..|.+.|.+.|..+++-.
T Consensus       373 Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----IV~elLqYL~tAd~sireei  424 (938)
T KOG1077|consen  373 IINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----IVAELLQYLETADYSIREEI  424 (938)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----HHHHHHHHHhhcchHHHHHH
Confidence            888888 678999999999999998754   3333     45567777888887776643

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.23  E-value=0.00032  Score=65.84  Aligned_cols=230  Identities=15%  Similarity=0.153  Sum_probs=154.8

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh-CCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhc
Q 042204          149 EFLMREDYPQLQYEAAWALTNIASKTSEDTKVVID-HGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLS  225 (559)
Q Consensus       149 ~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~  225 (559)
                      ++++.-+ +-.+.-|..+|.++.. .++.|..+-- ...-..++.++++  ...+++-+.+.+++-+... +.+.+.+-+
T Consensus       156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K  232 (432)
T COG5231         156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDK  232 (432)
T ss_pred             HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            4444445 6788999999999999 6777776543 3345567777766  5578888888888887644 333322221


Q ss_pred             -cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH--hhHhc-hHHHHHHhhc--cCCHhHHHHHHHHHHHhccC
Q 042204          226 -EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF--EQVRP-ALPVLAQLVH--SNDKEVLTDACWALYFLSNG  299 (559)
Q Consensus       226 -~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~--~~~~~-~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~  299 (559)
                       ...+.-++.+++......+.+-++..+.|++...|..-.  ....+ +.+..-.++.  ..|++++.+.-..=+.+...
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             224566777776777889999999999999985432221  11223 3333322332  34666655443322222111


Q ss_pred             ---------------------Ch---------hHHHHHHHh--CcHHHHHHhhCCCCCc-chhhHHHHHHHhhcCChHHH
Q 042204          300 ---------------------KN---------DKIQAVIEA--GVCPRLVELLGHRSSS-VLSPALQTIGHIVAGDDFQT  346 (559)
Q Consensus       300 ---------------------~~---------~~~~~~~~~--g~l~~L~~lL~~~~~~-v~~~al~~L~nl~~~~~~~~  346 (559)
                                           ++         .+...+.+.  .++..|.++++..++. ...-||.-|+.++...++..
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~  392 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN  392 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence                                 11         112233332  4788899999987776 66779999999999999988


Q ss_pred             HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204          347 QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT  382 (559)
Q Consensus       347 ~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  382 (559)
                      ..+.+.|+=+.++.+++|+ +++||-+|..++..+.
T Consensus       393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            8888999999999999999 9999999998887664

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.0017  Score=67.76  Aligned_cols=328  Identities=16%  Similarity=0.141  Sum_probs=171.1

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCH
Q 042204          150 FLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL  229 (559)
Q Consensus       150 lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l  229 (559)
                      =|++++ +-+|-..++.|+.+-.  ++    ++ ...+|.+...|.+.+..||++|+.|+..|-....   .++.  ++-
T Consensus       107 DLQHPN-EyiRG~TLRFLckLkE--~E----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p--Dap  173 (948)
T KOG1058|consen  107 DLQHPN-EYIRGSTLRFLCKLKE--PE----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP--DAP  173 (948)
T ss_pred             hccCch-HhhcchhhhhhhhcCc--HH----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC--ChH
Confidence            344555 5677777777766654  22    22 2567888889999999999999999999864321   1221  123


Q ss_pred             HHHHHHhchhhhHhHHHHHHHHHHHhhcCC------------CC----Cc--------------HhhHhchHHHHHHhhc
Q 042204          230 IPLLAQLNEHAKLSMLRTATWTLSNFCRGM------------PR----PI--------------FEQVRPALPVLAQLVH  279 (559)
Q Consensus       230 ~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~------------~~----~~--------------~~~~~~~l~~L~~lL~  279 (559)
                      .-+-..|....|+..+++|.-.|...-...            +.    ..              .......+..+..+|.
T Consensus       174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~  253 (948)
T KOG1058|consen  174 ELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLS  253 (948)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHh
Confidence            333344445667777777765444322110            00    00              0000112223333444


Q ss_pred             cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHH
Q 042204          280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYL  358 (559)
Q Consensus       280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L  358 (559)
                      +.++.++-.|..+|..++..+. ....     ....++.++.. ++..+..-.+.-|..+...+..    +++ |.+--+
T Consensus       254 stssaV~fEaa~tlv~lS~~p~-alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~----il~-~l~mDv  322 (948)
T KOG1058|consen  254 STSSAVIFEAAGTLVTLSNDPT-ALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK----ILQ-GLIMDV  322 (948)
T ss_pred             cCCchhhhhhcceEEEccCCHH-HHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH----HHH-HHHHHH
Confidence            4444444444444444432111 1111     11222222221 2222222223333333222211    111 344456


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204          359 LVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR  437 (559)
Q Consensus       359 ~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  437 (559)
                      +.+|.++ +-++|+.+......++. .+-+.+-.++...+...--. =...+.+.|..-+.++..++.. -|+...    
T Consensus       323 LrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~-Fp~~aa----  395 (948)
T KOG1058|consen  323 LRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVK-FPEVAA----  395 (948)
T ss_pred             HHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhc-ChHHHH----
Confidence            6677777 88888888877777754 34443333332211111000 0112335667777777777764 344433    


Q ss_pred             cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 042204          438 EKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI  517 (559)
Q Consensus       438 ~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~i  517 (559)
                       .+++.|++.+.+.++.....++..+...++.-++.            ....++     ..++.+..-....+++-|.||
T Consensus       396 -tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L------------r~~ii~-----~l~~~~~~irS~ki~rgalwi  457 (948)
T KOG1058|consen  396 -TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL------------RASIIE-----KLLETFPQIRSSKICRGALWI  457 (948)
T ss_pred             -HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH------------HHHHHH-----HHHHhhhhhcccccchhHHHH
Confidence             36889999999988887777787777777553332            233333     344555556778889999999


Q ss_pred             HHhhcCCCC
Q 042204          518 LETYWCGRV  526 (559)
Q Consensus       518 l~~~f~~~~  526 (559)
                      +-.|...+.
T Consensus       458 ~GeYce~~~  466 (948)
T KOG1058|consen  458 LGEYCEGLS  466 (948)
T ss_pred             HHHHHhhhH
Confidence            988877654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.16  E-value=0.00052  Score=68.77  Aligned_cols=315  Identities=14%  Similarity=0.057  Sum_probs=189.8

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-hHhHHHHHHHHHHHhhcCCCCCcH
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-KLSMLRTATWTLSNFCRGMPRPIF  264 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-~~~~~~~a~~~L~nL~~~~~~~~~  264 (559)
                      ..+.+..++-+++.+++..+.+++..+..+.... ..+.+.+.--.++.-|..+. ...-+..|+..+..+..-... ..
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~  103 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PK  103 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cc
Confidence            3344444444555999999999999888776554 34445454444445553332 334466788777777765321 12


Q ss_pred             hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204          265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       265 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  344 (559)
                      ..-.+++..++.+..+.++..+..|+.+|+.++-.++   +.+...|++..|.+.+.++...+....+.++-.+..... 
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-
Confidence            2346788889999999999999999999999997776   457889999999999887665677788888888876544 


Q ss_pred             HHHHHHhCCChHHHHHHhcCC------Cch--hHHHHHHHHHHHhhcCCHHHHHHHHHc-CCHHHHHHHhhcCChhHHHH
Q 042204          345 QTQCIINCGALPYLLVLLIHS------HKK--SIKNHACWTISKITAGNREQIQAVIDA-GLIGPLINLLQNAEINIKNW  415 (559)
Q Consensus       345 ~~~~~~~~g~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v~~~  415 (559)
                      ..+.+...--++.+..-+.+.      .+.  +--+.+..++..+...-+-.+-...+. ..+..|++.|..+.+++|+.
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            333344333355555544322      022  122344455555543211111111121 46888999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHH------HHcCChHHHHhcC---CCCC---hHHHHHHHHHHHHHHHhhhhhcccccccCcc
Q 042204          416 AAWAISNATSGGSHEQIKYL------VREKCIKPLCDLL---PCAN---PTIVTVCLKGLENILKVGEAEKNMDTAIGDV  483 (559)
Q Consensus       416 a~~aL~nl~~~~~~~~~~~l------~~~~~l~~L~~lL---~~~d---~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~  483 (559)
                      .+..+..+..-..+......      ...|-...-.++.   ....   +.....-...+.+.+.               
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a---------------  324 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA---------------  324 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH---------------
Confidence            99999999875443222111      1111110000111   0000   0000001111111110               


Q ss_pred             hHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHhhc
Q 042204          484 NQYAQLVEEAEGLEKIENLQSHE-NNEIHEKSVKILETYW  522 (559)
Q Consensus       484 ~~~~~~i~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~f  522 (559)
                       -....+.++|.++.|..+..+. ++.+..+|.-+|..++
T Consensus       325 -Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  325 -LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             -HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence             1345577899999999998776 8999999999887765

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.00036  Score=77.89  Aligned_cols=381  Identities=14%  Similarity=0.157  Sum_probs=212.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCC-CchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCchh
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS-KTSED  177 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~-~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~-~~~~~  177 (559)
                      ....+...+.|.++..+..++.-|-.+...-. .+.+.. ....+...+.++|.+.| +-.|..|++-|+-+-. ++...
T Consensus       819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~  896 (1702)
T KOG0915|consen  819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSL  896 (1702)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchh
Confidence            45667778889999888877644443332211 233222 22345688999999888 7889999887765432 23334


Q ss_pred             HHHHHhCCCHHHHHHhhCC---------CCHHHHH-------------HHHHHHHHHhCCCchhhhhhhccCCHHHHHHH
Q 042204          178 TKVVIDHGAVPIFVKLLAS---------PNDDIRE-------------QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQ  235 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~---------~~~~v~~-------------~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~l  235 (559)
                      ++.++     ..|+.-|-.         ++.++-+             ..-.-|.|+|.+-.+ .+      .+-.++++
T Consensus       897 k~~LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-Pd------LVYKFM~L  964 (1702)
T KOG0915|consen  897 KKSLV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PD------LVYKFMQL  964 (1702)
T ss_pred             HHHHH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hH------HHHHHHHH
Confidence            44333     344443322         1111111             111224444433211 11      23345555


Q ss_pred             hchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHH-hccCChhHHHHHHHhCcHH
Q 042204          236 LNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYF-LSNGKNDKIQAVIEAGVCP  314 (559)
Q Consensus       236 l~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~-l~~~~~~~~~~~~~~g~l~  314 (559)
                      -+++....-+.-|+.-+..++...-.........++|.|...=.++|..|+..-. -+++ |...+...+.... ..+++
T Consensus       965 Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~-sIW~~Li~D~k~~vd~y~-neIl~ 1042 (1702)
T KOG0915|consen  965 ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMT-SIWNALITDSKKVVDEYL-NEILD 1042 (1702)
T ss_pred             hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHH-HHHHHhccChHHHHHHHH-HHHHH
Confidence            5444445555566666666665542233334455666666665667777665444 4444 4433333333333 35788


Q ss_pred             HHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHH---HHHHHHHhhc--C---
Q 042204          315 RLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC--GALPYLLVLLIHSHKKSIKNH---ACWTISKITA--G---  384 (559)
Q Consensus       315 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--g~l~~L~~lL~~~~~~~v~~~---a~~~L~nl~~--~---  384 (559)
                      .|+.-|.+..+++|+.+|-+|..+..+.+..  .+.+.  .+...+...+++- ...||+.   ++.+|+.++.  .   
T Consensus      1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            8888899999999999999999999987632  12221  3344444555555 6677766   4566666654  1   


Q ss_pred             CHHHHHHHHHcCCHHHHHH--HhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHH-HHH
Q 042204          385 NREQIQAVIDAGLIGPLIN--LLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV-CLK  461 (559)
Q Consensus       385 ~~~~~~~li~~~~i~~Li~--lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~-~l~  461 (559)
                      ++..-+..++. ++|.|++  ++ +.-.++|+.++..+..++.....+...++-  .+++.|.+....-.+.+... ++.
T Consensus      1120 ~~~~~~~~l~~-iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r 1195 (1702)
T KOG0915|consen 1120 NGAKGKEALDI-ILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLR 1195 (1702)
T ss_pred             CcccHHHHHHH-HHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHh
Confidence            22222333332 5666654  22 456899999999999999876554444433  36778888877766665444 333


Q ss_pred             HHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHH
Q 042204          462 GLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSV  515 (559)
Q Consensus       462 ~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~  515 (559)
                      + .++-...           -.+.....-...-.++.|..+.++-+..+-+.-.
T Consensus      1196 ~-~~~e~ea-----------lDt~R~s~aksspmmeTi~~ci~~iD~~vLeeli 1237 (1702)
T KOG0915|consen 1196 L-INIETEA-----------LDTLRASAAKSSPMMETINKCINYIDISVLEELI 1237 (1702)
T ss_pred             h-hhhHHHH-----------HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHH
Confidence            3 2221110           0111233333344567777777777766655443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.12  E-value=6.1e-06  Score=54.11  Aligned_cols=41  Identities=37%  Similarity=0.654  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204          385 NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       385 ~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~  425 (559)
                      ++++++.+++.|++|.|+++|.+++++++++|+|+|.|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47888999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.12  E-value=6.5e-05  Score=61.34  Aligned_cols=153  Identities=7%  Similarity=0.063  Sum_probs=121.3

Q ss_pred             ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHH
Q 042204          354 ALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIK  433 (559)
Q Consensus       354 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  433 (559)
                      .+..|+.-.+...+.+.++....-|.|++ .+|.+...+.+.+++..+++.|...+..++..++.+|+|++.  ++....
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            35566666665557888888888888885 578888999999999999999999999999999999999998  678889


Q ss_pred             HHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 042204          434 YLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEK  513 (559)
Q Consensus       434 ~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~  513 (559)
                      .+.+.+.++.++..+.++...++..++.++..+. .+            .+.....+-.--+++.++.+..+..-+.+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~-~~------------~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLE-FG------------ERTERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc-Cc------------ccchhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999988888888877766544 22            2224555666667788888876666777777


Q ss_pred             HHHHHHhhc
Q 042204          514 SVKILETYW  522 (559)
Q Consensus       514 a~~il~~~f  522 (559)
                      |...++++.
T Consensus       161 a~~fl~~~~  169 (173)
T KOG4646|consen  161 ASAFLDKHV  169 (173)
T ss_pred             HHHHHHhhc
Confidence            777777654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.11  E-value=0.00013  Score=59.53  Aligned_cols=128  Identities=19%  Similarity=0.181  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 042204           96 TRLEIFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT  174 (559)
Q Consensus        96 ~~~~~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~  174 (559)
                      ..++-+..+|...+ ..+.+.+.+.+..|.+++..  +-+...+.+..++..++..|..++ ..+.+.++..|+|+|. +
T Consensus        13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d   88 (173)
T KOG4646|consen   13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-D   88 (173)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-C
Confidence            34577888888777 46678888888889997654  567788889999999999999999 8999999999999999 7


Q ss_pred             chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccC
Q 042204          175 SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEE  227 (559)
Q Consensus       175 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g  227 (559)
                      +.+...+++.+++|..+..++++...+...|+.++-.++......|+.+....
T Consensus        89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~  141 (173)
T KOG4646|consen   89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPA  141 (173)
T ss_pred             hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHH
Confidence            89999999999999999999999999999999999999877666777776533

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.10  E-value=0.00044  Score=69.30  Aligned_cols=324  Identities=14%  Similarity=0.095  Sum_probs=196.0

Q ss_pred             HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHh
Q 042204          136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVA  213 (559)
Q Consensus       136 ~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~  213 (559)
                      ..+.-....+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|..  .+..=|++|+..+..+.
T Consensus        19 ~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l   96 (371)
T PF14664_consen   19 YDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFL   96 (371)
T ss_pred             hhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHH
Confidence            33333345555555555666 7999999999999998 67778888887766666666654  45566889999988887


Q ss_pred             CCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHH
Q 042204          214 GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWAL  293 (559)
Q Consensus       214 ~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L  293 (559)
                      ......+  -+..+++..++... .+.+..++..++.+|..++-.+  +......|++..|.+.+.++..++....+.++
T Consensus        97 ~~~~~~~--~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l  171 (371)
T PF14664_consen   97 EIKKGPK--EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTL  171 (371)
T ss_pred             HhcCCcc--cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence            5422211  12556788888888 5567789999999999999874  45555688999999988776667889999999


Q ss_pred             HHhccCChhHHHHHHHhC-cHHHHHHhhCCC-------CC--cchhhHHHHHHHhhcCChHHHHHHHh-CCChHHHHHHh
Q 042204          294 YFLSNGKNDKIQAVIEAG-VCPRLVELLGHR-------SS--SVLSPALQTIGHIVAGDDFQTQCIIN-CGALPYLLVLL  362 (559)
Q Consensus       294 ~~l~~~~~~~~~~~~~~g-~l~~L~~lL~~~-------~~--~v~~~al~~L~nl~~~~~~~~~~~~~-~g~l~~L~~lL  362 (559)
                      .++.+.+..+  ..+..| -++.++.-+.+.       +.  .....+..++..+...=+...-.-.+ ..++..|+..|
T Consensus       172 L~lLd~p~tR--~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L  249 (371)
T PF14664_consen  172 LYLLDSPRTR--KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSL  249 (371)
T ss_pred             HHHhCCcchh--hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHH
Confidence            9999766543  223222 234444433322       11  12223344444333321111100111 25788899999


Q ss_pred             cCCCchhHHHHHHHHHHHhhcC-CHHHHHH------HHHcCCHHHHHHHh---hcCChhHHHHHHHHHHHHhcCCCHHHH
Q 042204          363 IHSHKKSIKNHACWTISKITAG-NREQIQA------VIDAGLIGPLINLL---QNAEINIKNWAAWAISNATSGGSHEQI  432 (559)
Q Consensus       363 ~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~------li~~~~i~~Li~lL---~~~~~~v~~~a~~aL~nl~~~~~~~~~  432 (559)
                      ..+ .+++|+.....+..+..- .++....      +...+-+..-.++-   ........... .--.++..+...-..
T Consensus       250 ~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll  327 (371)
T PF14664_consen  250 RLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLL  327 (371)
T ss_pred             cCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHH
Confidence            998 888999998888888752 2211111      11111110000110   00000000000 000111111111234


Q ss_pred             HHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHhh
Q 042204          433 KYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       433 ~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~~  470 (559)
                      ..+++.|+++.|+++.... |+.+...+.-.|..++..+
T Consensus       328 ~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  328 AILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            4567899999999999876 8888888888898888654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.05  E-value=0.00015  Score=79.01  Aligned_cols=258  Identities=16%  Similarity=0.137  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---chhHHHHHhCCCHHH
Q 042204          113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT---SEDTKVVIDHGAVPI  189 (559)
Q Consensus       113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~---~~~~~~i~~~g~i~~  189 (559)
                      .+.+..|+..|..+...-..+    ..-.-++|.++.++.++. +++|..|+.+|+.+..--   +..-..+...-++|.
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~  511 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFPH  511 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence            567788888888764332111    222348999999999999 899999999999876521   111122333456788


Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHHhCC------------------Cchhhhhh---hc------cCCHHHHHHHhchhhh
Q 042204          190 FVKLLAS-PNDDIREQAVWALGNVAGD------------------SPRCRDLV---LS------EEALIPLLAQLNEHAK  241 (559)
Q Consensus       190 L~~lL~~-~~~~v~~~a~~~L~nl~~~------------------~~~~r~~i---~~------~g~l~~Ll~ll~~~~~  241 (559)
                      |-.++.+ ....+|-.-+.+|+.+|..                  .+......   .+      ...+...+.-|..+++
T Consensus       512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~  591 (1431)
T KOG1240|consen  512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP  591 (1431)
T ss_pred             hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence            8888877 4444555444555555421                  11100000   00      0012222222324555


Q ss_pred             HhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC
Q 042204          242 LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG  321 (559)
Q Consensus       242 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~  321 (559)
                      +-+++..+..+.-||...-  ....-.-+++.|..+|++.|+.++..-...|..++-.-.-   .-++..++|.|.+-|.
T Consensus       592 ~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---rs~seyllPLl~Q~lt  666 (1431)
T KOG1240|consen  592 PIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---RSVSEYLLPLLQQGLT  666 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---eeHHHHHHHHHHHhcc
Confidence            6677777777777775321  0111134678899999999999998888888776633221   1245567899999999


Q ss_pred             CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          322 HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       322 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      +.++.|...|++++..++...--....+.  .+++....+|-++ +.-||..++..|..++.
T Consensus       667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  667 DGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             CcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            99999999999999999875443333333  3566777788899 99999999999988765

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.02  E-value=8e-05  Score=70.15  Aligned_cols=189  Identities=16%  Similarity=0.151  Sum_probs=119.0

Q ss_pred             hcCCCHHHHHHHHHHHHHhccCC-CCchHHHHHh--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC
Q 042204          108 VWSDDNNLQLEATTKFRKLLSIE-RSPPIEEVIQ--SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDH  184 (559)
Q Consensus       108 L~s~~~~~~~~a~~~l~~lls~~-~~~~~~~ii~--~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~  184 (559)
                      -.+.+++.+.+|+..|+.++.+. .......+.+  ..+++.+...+.+.. ..+...|+.++..++..-...-...+ .
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~   93 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-D   93 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence            36789999999999999998764 1122222221  145567777777666 68999999999999885443333332 3


Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC--CC
Q 042204          185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP--RP  262 (559)
Q Consensus       185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~--~~  262 (559)
                      .++|.|+..+.++...+++.|..+|..++...+....      .+..++.....+.++.++..++..+..+....+  ..
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            5789999999999999999999999999876541111      223334433477889999999888888877654  12


Q ss_pred             cHh---hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHH
Q 042204          263 IFE---QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKI  304 (559)
Q Consensus       263 ~~~---~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~  304 (559)
                      ...   ....+++.+..++.+.+++|+..|-.++..+....++..
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a  212 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA  212 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence            111   235688899999999999999999999988865544443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.02  E-value=0.0045  Score=66.38  Aligned_cols=142  Identities=15%  Similarity=0.140  Sum_probs=110.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..++.+++.+.+.|.+++...-..+......  .| ...+.   .++.+.+=+++++ +.+|..|++.++.+-.  ++..
T Consensus        55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~--~P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~  125 (757)
T COG5096          55 SLFPDVIKNVATRDVELKRLLYLYLERYAKL--KP-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELL  125 (757)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--CH-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHH
Confidence            3578888888888888888888888887654  22 23322   5788888889999 9999999999988765  2222


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                           ..+++++.+++.++++.||..|+.|+.++-.-++   +.+.+.|.+..+..++ .+.++.+.++|+.+|..+...
T Consensus       126 -----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         126 -----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                 2467899999999999999999999999975543   4566667666666666 788999999999999998776

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.01  E-value=0.0004  Score=75.85  Aligned_cols=292  Identities=16%  Similarity=0.107  Sum_probs=181.1

Q ss_pred             HHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC----CC
Q 042204          187 VPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM----PR  261 (559)
Q Consensus       187 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~----~~  261 (559)
                      ++.+...+.+ ...+.+..|+..|..++.....   ...-..+++.++.++ .++...++..|+.+|..+...-    +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4555555554 4566777888888888743221   111123578888888 7778889999998888776433    22


Q ss_pred             CcHhhHhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204          262 PIFEQVRPALPVLAQLVHS-NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       262 ~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  340 (559)
                      ......+-++|.|..++.+ ....++..-+.+|..|+...    -.+.+.+.-.+...++..++.+       +....- 
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse-------t~~~~~-  567 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE-------TAPEQN-  567 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc-------cccccc-
Confidence            3334457788999999987 45556666677777776322    2233322223333334444433       111100 


Q ss_pred             CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHH
Q 042204          341 GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWA  419 (559)
Q Consensus       341 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~a  419 (559)
                      ++ ...+.+.+ ++-.....+|..+ ++-||..-...|.-+|.. ..+.    -+.=+++.|+..|.+.|+.+|..-...
T Consensus       568 ~~-~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfds  640 (1431)
T KOG1240|consen  568 YN-TELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFDS  640 (1431)
T ss_pred             cc-hHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHhh
Confidence            11 12222222 4445667777777 778888777777777651 0110    112268999999999999999877766


Q ss_pred             HHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHH
Q 042204          420 ISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKI  499 (559)
Q Consensus       420 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l  499 (559)
                      |.-++..-....    ++..+++.|.+-|.+..+.|+..|+.+|..+++.+--.+..         +.      ..++.+
T Consensus       641 I~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~---------v~------~i~~~v  701 (1431)
T KOG1240|consen  641 IVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA---------VK------DILQDV  701 (1431)
T ss_pred             ccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH---------HH------HHHHhh
Confidence            665543211111    34457888888899999999999999999999776432211         12      223555


Q ss_pred             HHHhcCCCHHHHHHHHHHHHh
Q 042204          500 ENLQSHENNEIHEKSVKILET  520 (559)
Q Consensus       500 ~~L~~~~~~~v~~~a~~il~~  520 (559)
                      .-|.-|+|.=|+..+..+|-.
T Consensus       702 ~PlL~hPN~WIR~~~~~iI~~  722 (1431)
T KOG1240|consen  702 LPLLCHPNLWIRRAVLGIIAA  722 (1431)
T ss_pred             hhheeCchHHHHHHHHHHHHH
Confidence            677889999999988877654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.99  E-value=0.0016  Score=67.36  Aligned_cols=264  Identities=15%  Similarity=0.148  Sum_probs=173.5

Q ss_pred             HHHHHhccCCCCchHHHHHhcCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHH
Q 042204          121 TKFRKLLSIERSPPIEEVIQSGVVPRFVEFL---------MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFV  191 (559)
Q Consensus       121 ~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL---------~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~  191 (559)
                      ..|+- ++++ ....+.+.....+..|.++-         ....++.+..+|++||+|+...++..|+.+++.|..+.++
T Consensus         3 ~~LRi-LsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    3 ETLRI-LSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHH-HccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            34443 4443 44566666666677776665         3333489999999999999999999999999999999999


Q ss_pred             HhhCCC-----CHHHHHHHHHHHHHHhCCCchhhhhhh-ccCCHHHHHHHhchh----------------hhHhHHHHHH
Q 042204          192 KLLASP-----NDDIREQAVWALGNVAGDSPRCRDLVL-SEEALIPLLAQLNEH----------------AKLSMLRTAT  249 (559)
Q Consensus       192 ~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~l~~Ll~ll~~~----------------~~~~~~~~a~  249 (559)
                      ..|+..     +.++.-...+.|.-++...+..+..+. +.+++..++..+...                .+......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999875     778888888888888777777665554 446666666655311                2445566688


Q ss_pred             HHHHHhhcCCCCCcH----hhHhchHHHHHHhh---c--cCCHhHHHHHHHHHHHhccCChhHH-----------HHHHH
Q 042204          250 WTLSNFCRGMPRPIF----EQVRPALPVLAQLV---H--SNDKEVLTDACWALYFLSNGKNDKI-----------QAVIE  309 (559)
Q Consensus       250 ~~L~nL~~~~~~~~~----~~~~~~l~~L~~lL---~--~~d~~v~~~a~~~L~~l~~~~~~~~-----------~~~~~  309 (559)
                      .++.|+....+....    .....++..+..++   .  .+......+++.+|.++--......           .....
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            889999877644332    22344455555552   1  1235677888888888732111110           00111


Q ss_pred             hCcHHHHHHhhCC----C----CCcchhhHHHHHHHhhcCChHHHHHHHh----------------CCChHHHHHHhcCC
Q 042204          310 AGVCPRLVELLGH----R----SSSVLSPALQTIGHIVAGDDFQTQCIIN----------------CGALPYLLVLLIHS  365 (559)
Q Consensus       310 ~g~l~~L~~lL~~----~----~~~v~~~al~~L~nl~~~~~~~~~~~~~----------------~g~l~~L~~lL~~~  365 (559)
                      ...+..|+.+|..    .    -.....+.+.+|.+++..+....+.+..                ..+-..|+.++.++
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            2345666666543    1    1256788999999999887654443321                24567788888888


Q ss_pred             CchhHHHHHHHHHHHhhcCCHH
Q 042204          366 HKKSIKNHACWTISKITAGNRE  387 (559)
Q Consensus       366 ~~~~v~~~a~~~L~nl~~~~~~  387 (559)
                       .+.+|..++..+-.+|..+..
T Consensus       321 -~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  321 -DPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             -CchHHHHHHHHHHHHHhhhHH
Confidence             688998888888888755443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.97  E-value=0.0066  Score=62.60  Aligned_cols=345  Identities=15%  Similarity=0.116  Sum_probs=196.2

Q ss_pred             HHHHHHhcCCCH---HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204          102 AAMVAGVWSDDN---NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus       102 ~~lv~~L~s~~~---~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      |.++..|.+.+.   ......+..|..+ +.+ .+..+.++ ..++..+-..++...+.+....++.+|.++.....+..
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~l-s~~-~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAAL-STS-PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHH-HCC-hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            556666665554   4556677777775 332 23233322 24555555555544446777888888888766432222


Q ss_pred             -----HHHHhCCCHHHHHHhhCC-----C--CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---------
Q 042204          179 -----KVVIDHGAVPIFVKLLAS-----P--NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---------  237 (559)
Q Consensus       179 -----~~i~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---------  237 (559)
                           ....+..+++.+..+.-.     .  +..+.+.+...+..+...-+.-++.-    .+..+..++.         
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence                 233344477888776532     1  24566666666666654443322211    1333333332         


Q ss_pred             -hh-----hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccC--ChhHHHHHH
Q 042204          238 -EH-----AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNG--KNDKIQAVI  308 (559)
Q Consensus       238 -~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~--~~~~~~~~~  308 (559)
                       ..     .......-...+++.+-+   ..........+..++.+.. ..++..+..++.+++-+...  .++..+   
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRK---DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCc---ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence             00     011112222233333332   2222233456777776654 45688889999999988844  222222   


Q ss_pred             HhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhc----CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          309 EAGVCPRLVELL-GHRSSSVLSPALQTIGHIVA----GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       309 ~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~----~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                        .++..+...+ .......+..++.++.-++.    .......     ..+..|+.+|.+   +.+...|+..+.-+..
T Consensus       229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~  298 (415)
T PF12460_consen  229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLS  298 (415)
T ss_pred             --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence              2334444444 33344445555555443332    2222221     345678888865   4678888888887766


Q ss_pred             CCH--------HHHHHHHHcC----CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC
Q 042204          384 GNR--------EQIQAVIDAG----LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA  451 (559)
Q Consensus       384 ~~~--------~~~~~li~~~----~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  451 (559)
                      ..+        ..++.+....    ++|.|++-....+.+.+..-..||+++..+-....... --..++|.|++-|+.+
T Consensus       299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~  377 (415)
T PF12460_consen  299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP  377 (415)
T ss_pred             CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence            422        3334444333    57777777777777788999999999999754433222 2245889999999999


Q ss_pred             ChHHHHHHHHHHHHHHHhh
Q 042204          452 NPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       452 d~~v~~~~l~~l~~il~~~  470 (559)
                      |++++..++++|..++...
T Consensus       378 ~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  378 DADVLLSSLETLKMILEEA  396 (415)
T ss_pred             CHHHHHHHHHHHHHHHHcC
Confidence            9999999999999998654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.95  E-value=0.00094  Score=62.78  Aligned_cols=236  Identities=15%  Similarity=0.137  Sum_probs=144.7

Q ss_pred             HHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHh
Q 042204          274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIIN  351 (559)
Q Consensus       274 L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~  351 (559)
                      |-++++.-++-.+--|..++.++......+.-...+...-.+++++++.  ...+++...+.++.-+... ++..+.+-+
T Consensus       154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K  232 (432)
T COG5231         154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDK  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            3344555566677888888988885544333333344455678888876  3467888899888887764 333322211


Q ss_pred             -CCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHH-HcCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcC
Q 042204          352 -CGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVI-DAGLIGPLINLLQNA--EINIKNWAAWAISNATSG  426 (559)
Q Consensus       352 -~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li-~~~~i~~Li~lL~~~--~~~v~~~a~~aL~nl~~~  426 (559)
                       ...+..|+.+.+..-...|-+-+|.++.|++. .....+..+. ..++.+..--++..+  |.+++...-..=..+...
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             13456666666654356777888999999987 3334454444 444555554444432  555554333322222211


Q ss_pred             C-----------------------------CHHHHHHHHHc--CChHHHHhcCCCCChH-HHHHHHHHHHHHHHhhhhhc
Q 042204          427 G-----------------------------SHEQIKYLVRE--KCIKPLCDLLPCANPT-IVTVCLKGLENILKVGEAEK  474 (559)
Q Consensus       427 ~-----------------------------~~~~~~~l~~~--~~l~~L~~lL~~~d~~-v~~~~l~~l~~il~~~~~~~  474 (559)
                      .                             -..+...+.+.  .++..|..+++...+. ....|+.-+..+....+   
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P---  389 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP---  389 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc---
Confidence            0                             01233344432  3466777777666554 45556666666554432   


Q ss_pred             ccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          475 NMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       475 ~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                                +....+...|+-+.|.+|.+|++++|+-.|.+.++.+.+
T Consensus       390 ----------E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         390 ----------EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             ----------hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence                      357788999999999999999999999999998887654

>PF05536 Neurochondrin: Neurochondrin

Probab=97.95  E-value=0.00078  Score=71.18  Aligned_cols=237  Identities=18%  Similarity=0.154  Sum_probs=160.2

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh---hhhhhccCCHHHHHHHhchh------hhHhHHHHHHHHHHHhh
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC---RDLVLSEEALIPLLAQLNEH------AKLSMLRTATWTLSNFC  256 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~l~~Ll~ll~~~------~~~~~~~~a~~~L~nL~  256 (559)
                      .+...+.+|++.+.+-|-.++..+.+++...+..   ++.+.+.=+...+-++|...      +....+.-++..|+.+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            4567788888888777777778888887655432   23455554566666666431      34566777889999999


Q ss_pred             cCCCCCcHhhHhchHHHHHHhhccCCH-hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204          257 RGMPRPIFEQVRPALPVLAQLVHSNDK-EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI  335 (559)
Q Consensus       257 ~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  335 (559)
                      +.........+.+.+|.|++++.+.+. ++..+++.+|..++ ..++..+.+++.|.++.|++.+.+ .+.....|+.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            965444455667889999999987766 99999999999999 555566899999999999999987 566788899999


Q ss_pred             HHhhcCChHHHHH---HHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH-HHHHH----HcCCHHHHHHHhhc
Q 042204          336 GHIVAGDDFQTQC---IINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ-IQAVI----DAGLIGPLINLLQN  407 (559)
Q Consensus       336 ~nl~~~~~~~~~~---~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~li----~~~~i~~Li~lL~~  407 (559)
                      .+++.........   -.-..+++.+...+... ....+-+++..|+++....+.. .....    -..+...+.++|++
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            9988754421100   00114456666666655 6667888899999887644211 11111    12245556666665


Q ss_pred             C-ChhHHHHHHHHHHHHhc
Q 042204          408 A-EINIKNWAAWAISNATS  425 (559)
Q Consensus       408 ~-~~~v~~~a~~aL~nl~~  425 (559)
                      . .+.-|..+......+..
T Consensus       243 r~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            5 45556666666555553

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.92  E-value=5e-05  Score=71.53  Aligned_cols=186  Identities=18%  Similarity=0.258  Sum_probs=117.9

Q ss_pred             hCCCCCcchhhHHHHHHHhhcCC--hHHHHHHHhC--CChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 042204          320 LGHRSSSVLSPALQTIGHIVAGD--DFQTQCIINC--GALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA  395 (559)
Q Consensus       320 L~~~~~~v~~~al~~L~nl~~~~--~~~~~~~~~~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~  395 (559)
                      -.+.++..+..|+..|..++.+.  ......+.+.  .++..+...+.+. ...+.+.||.++..++......+...++.
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~   94 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI   94 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            35678889999999999998877  2222222221  5666777777777 78899999999999987433335555444


Q ss_pred             CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhc
Q 042204          396 GLIGPLINLLQNAEINIKNWAAWAISNATSGGS-HEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEK  474 (559)
Q Consensus       396 ~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~  474 (559)
                       ++|.|++.+.++...++..|..+|..++.... ....       .+..+.....++++.++..++..+..++.......
T Consensus        95 -~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~  166 (228)
T PF12348_consen   95 -LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS  166 (228)
T ss_dssp             -HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred             -HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence             78999999999989999999999999998754 1221       15566677899999999999999999886544111


Q ss_pred             ccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          475 NMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       475 ~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      ..      .. ....+  ....+.|..+..+.+++|++.|...+..|+.
T Consensus       167 ~~------l~-~~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  167 SV------LQ-KSAFL--KQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             GG------G---HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             hh------hc-ccchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            00      00 01111  2235788889999999999999888887754

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.0042  Score=69.83  Aligned_cols=343  Identities=16%  Similarity=0.156  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH
Q 042204          113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK  192 (559)
Q Consensus       113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~  192 (559)
                      +..+.-|+.-|..++.... +..+. .-.-+||+|.+.=-+++ +.+|..-..+...+..+.....+... ..+++-|+.
T Consensus       971 wnSk~GaAfGf~~i~~~a~-~kl~p-~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~ 1046 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQAG-EKLEP-YLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLV 1046 (1702)
T ss_pred             hhcccchhhchHHHHHHHH-Hhhhh-HHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHH
Confidence            4555567777777665431 11111 11237888888866777 89988777777777774333333333 467788888


Q ss_pred             hhCCCCHHHHHHHHHHHHHHhCCCch--hhhhhhccCCHHHHHHHhchhhhHhHHHH---HHHHHHHhhcCC-----CCC
Q 042204          193 LLASPNDDIREQAVWALGNVAGDSPR--CRDLVLSEEALIPLLAQLNEHAKLSMLRT---ATWTLSNFCRGM-----PRP  262 (559)
Q Consensus       193 lL~~~~~~v~~~a~~~L~nl~~~~~~--~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~---a~~~L~nL~~~~-----~~~  262 (559)
                      -|.+....+|+.++.||..+....+.  ..+.+.+  ....+.+.+ ++-...++..   ++.+|+.+|-..     +..
T Consensus      1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            88889999999999999999866443  2222221  233334444 4445556655   556666666433     222


Q ss_pred             cHhhHhchHHHHHH-hhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh-hHHHH------
Q 042204          263 IFEQVRPALPVLAQ-LVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS-PALQT------  334 (559)
Q Consensus       263 ~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~-~al~~------  334 (559)
                      .......++|.|+. -+-++-++++..++.++..|+...+....... ..++|.|+...+.-++.+.. -++++      
T Consensus      1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred             HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence            23334555565542 11256689999999999999977765433222 24667777766655544332 23332      


Q ss_pred             ----HH-HhhcCChH--HHHHHH-------hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHH
Q 042204          335 ----IG-HIVAGDDF--QTQCII-------NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGP  400 (559)
Q Consensus       335 ----L~-nl~~~~~~--~~~~~~-------~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~  400 (559)
                          +. +++.+++-  .+...+       -...+|.+.++++..-.-..|..++..++-++..-....... ...++..
T Consensus      1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRA 1281 (1702)
T ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHH
Confidence                21 11111110  000000       113456666666544333445555555555543100000000 1124556


Q ss_pred             HHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          401 LINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       401 Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ++..+++.+..+++.-..|.+.++....+.+...+++    ..+..++...++. ...++..+.+|...
T Consensus      1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es~-~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDESL-KSISCATISNIANY 1345 (1702)
T ss_pred             HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCCc-cchhHHHHHHHHHh
Confidence            6666677889999999999999999888878777554    2344444433331 14444444444433

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.91  E-value=2.8e-05  Score=60.98  Aligned_cols=87  Identities=29%  Similarity=0.465  Sum_probs=69.5

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204          144 VPRFVEFL-MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL  222 (559)
Q Consensus       144 v~~Lv~lL-~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  222 (559)
                      ||.|++.| ++++ +.+|..|+++|+.+..  +         .+++.|+.+++++++.+|..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            58899999 6666 9999999999995533  1         35899999999999999999999999883         


Q ss_pred             hhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204          223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLS  253 (559)
Q Consensus       223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~  253 (559)
                        ....++.|...+.++.+..++..+.++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12257889998866666677888888774

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.91  E-value=0.0018  Score=69.86  Aligned_cols=377  Identities=13%  Similarity=0.080  Sum_probs=224.8

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHH
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVP  188 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~  188 (559)
                      +..++..+..++..+.++.+.-    .......+++|.+.++..++. ..+|+.|...+.++..-....-  -+.....+
T Consensus       247 ~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~  319 (759)
T KOG0211|consen  247 QDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVKSLTE  319 (759)
T ss_pred             cccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhhhhhH
Confidence            3445566666666666654321    225556677788888777766 5788877777777765221111  22234567


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC--cHhh
Q 042204          189 IFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP--IFEQ  266 (559)
Q Consensus       189 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~  266 (559)
                      .+++...+++..++.........+...-..   ......-+++...++ .+...+.+..+..-...++...+..  ....
T Consensus       320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~  395 (759)
T KOG0211|consen  320 SLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCYPNIP  395 (759)
T ss_pred             HHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccccccc
Confidence            777777777777766655555544321111   111112345555555 3444444444443344444333211  1122


Q ss_pred             HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH
Q 042204          267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT  346 (559)
Q Consensus       267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  346 (559)
                      ...++|.+-.+..+.+..++...+..+..+....+  ....+ ....|.+...+++..+.|+....+.+..+-..++...
T Consensus       396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g  472 (759)
T KOG0211|consen  396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG  472 (759)
T ss_pred             hhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc
Confidence            34557888888888888888887777776653333  11111 1356777778888888888888877766655555433


Q ss_pred             HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          347 QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       347 ~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      ........++.+..+-... ...++.+..+.+-.++....   ..+++...-+.+...+.+....+++.|+..+..++..
T Consensus       473 ~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~  548 (759)
T KOG0211|consen  473 ISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVET  548 (759)
T ss_pred             chhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHH
Confidence            3444456677777777666 67888888888877764211   2333333444444555666778999998888887753


Q ss_pred             CCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC
Q 042204          427 GSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE  506 (559)
Q Consensus       427 ~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~  506 (559)
                      -..+.    .....++.+......++-..+..++.++..+.....                ..+.....++-+..+..++
T Consensus       549 ~G~~w----~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g----------------~ei~~~~Llp~~~~l~~D~  608 (759)
T KOG0211|consen  549 FGSEW----ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG----------------QEITCEDLLPVFLDLVKDP  608 (759)
T ss_pred             hCcch----hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc----------------cHHHHHHHhHHHHHhccCC
Confidence            22111    112246666666656567778888888886664422                1233334468888899999


Q ss_pred             CHHHHHHHHHHHHhhcC
Q 042204          507 NNEIHEKSVKILETYWC  523 (559)
Q Consensus       507 ~~~v~~~a~~il~~~f~  523 (559)
                      .++|+-.+.+.+..+-.
T Consensus       609 vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  609 VANVRINVAKHLPKILK  625 (759)
T ss_pred             chhhhhhHHHHHHHHHh
Confidence            99999988888877644

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.90  E-value=2.7e-05  Score=54.88  Aligned_cols=55  Identities=29%  Similarity=0.596  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204          368 KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA  423 (559)
Q Consensus       368 ~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl  423 (559)
                      +.+|..|+|+|++++...++..+..... +++.|+.+|.+++++||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~-~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPE-LLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHH-HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999988778877776554 999999999999999999999999875

...

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.0052  Score=63.86  Aligned_cols=297  Identities=12%  Similarity=0.111  Sum_probs=176.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .+..+.+-|.|.|+..+..|+.++.++-+.   +..+.+..  =+|   ++|-+++ .+-++..|+-||..+-..+++. 
T Consensus       112 vin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-  182 (938)
T KOG1077|consen  112 VINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-  182 (938)
T ss_pred             HHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc-
Confidence            455666777888999999999999997543   23332221  233   5555544 3578899999999998866543 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-----hh-----------hhH
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN-----EH-----------AKL  242 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~-----~~-----------~~~  242 (559)
                        +-..+-...++++|.+.+-.+...+...+..|+...|+...     +.++.-+..|.     ..           +.+
T Consensus       183 --~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP~P  255 (938)
T KOG1077|consen  183 --VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAP  255 (938)
T ss_pred             --cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCCCh
Confidence              22235678889999988888877788888888766655321     12222222221     01           112


Q ss_pred             hHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc----CC---HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHH
Q 042204          243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS----ND---KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPR  315 (559)
Q Consensus       243 ~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~----~d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~  315 (559)
                      =+...++..|.++-.............++..++...+.    .+   ......++.-..+++.+-+..-+.+..  .+..
T Consensus       256 WL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~  333 (938)
T KOG1077|consen  256 WLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQ  333 (938)
T ss_pred             HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHH
Confidence            23344445554441111111122223333333333331    11   112222222223333222222233333  4788


Q ss_pred             HHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 042204          316 LVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA  395 (559)
Q Consensus       316 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~  395 (559)
                      |.++|.+.+..+|.-|+..+..+++.... .+.+..+  .+.++..|+...+..+|+.|+..|..+|..  ++.+.    
T Consensus       334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~----  404 (938)
T KOG1077|consen  334 LGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ----  404 (938)
T ss_pred             HHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH----
Confidence            99999999999999999999999987543 3444443  778888898554999999999999999853  22232    


Q ss_pred             CCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204          396 GLIGPLINLLQNAEINIKNWAAWAISNAT  424 (559)
Q Consensus       396 ~~i~~Li~lL~~~~~~v~~~a~~aL~nl~  424 (559)
                       ++..|++.|.+.|+.+|++.+.=+.-++
T Consensus       405 -IV~elLqYL~tAd~sireeivlKvAILa  432 (938)
T KOG1077|consen  405 -IVAELLQYLETADYSIREEIVLKVAILA  432 (938)
T ss_pred             -HHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence             4556788888888888776655444444

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.0044  Score=57.09  Aligned_cols=245  Identities=18%  Similarity=0.241  Sum_probs=150.8

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHH
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVP  188 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~  188 (559)
                      .+....-++.|+..|+++....            .+..+.+...+++ .-++.+.+.+|+....           ..+++
T Consensus        15 ~s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~   70 (289)
T KOG0567|consen   15 KSQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVP   70 (289)
T ss_pred             ccHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhH
Confidence            3445567888999998876532            2555666665555 5777888888887766           24788


Q ss_pred             HHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-------
Q 042204          189 IFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-------  259 (559)
Q Consensus       189 ~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-------  259 (559)
                      .|+..|..  ..+-+|..|..+|+++. + +.         .++.+-+.. +++-..+...+-.++..+-...       
T Consensus        71 ~l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~  138 (289)
T KOG0567|consen   71 VLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIAN  138 (289)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccc
Confidence            88887765  56778888999998885 2 22         123333333 4555556665555555543221       


Q ss_pred             --------CCCcHhhHhchHHHHHHhhc-cCCHhH-HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh
Q 042204          260 --------PRPIFEQVRPALPVLAQLVH-SNDKEV-LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS  329 (559)
Q Consensus       260 --------~~~~~~~~~~~l~~L~~lL~-~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~  329 (559)
                              |.+.  ....-+..+-..|. .+.+.. +..+...|+|+-  .++.         +..|++-+..++.-.|.
T Consensus       139 ~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Eea---------I~al~~~l~~~Salfrh  205 (289)
T KOG0567|consen  139 SSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEA---------INALIDGLADDSALFRH  205 (289)
T ss_pred             cCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHH---------HHHHHHhcccchHHHHH
Confidence                    1111  11122333333333 222332 334555555543  2222         45666667777777899


Q ss_pred             hHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC
Q 042204          330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA  408 (559)
Q Consensus       330 ~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~  408 (559)
                      .+..++|.+-+.           -.++.|.+.|. ..+.+-+|.+|+.+|+.|+  +++         .++.|.+.+.++
T Consensus       206 EvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--~e~---------~~~vL~e~~~D~  263 (289)
T KOG0567|consen  206 EVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA--DED---------CVEVLKEYLGDE  263 (289)
T ss_pred             HHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc--CHH---------HHHHHHHHcCCc
Confidence            999999987542           23566666663 3447899999999999995  344         466677778888


Q ss_pred             ChhHHHHHHHHHHHHh
Q 042204          409 EINIKNWAAWAISNAT  424 (559)
Q Consensus       409 ~~~v~~~a~~aL~nl~  424 (559)
                      ++-+++.+..+|.-+-
T Consensus       264 ~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  264 ERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7888888777776443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.85  E-value=0.0021  Score=65.11  Aligned_cols=287  Identities=14%  Similarity=0.083  Sum_probs=146.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh
Q 042204          144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV  223 (559)
Q Consensus       144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  223 (559)
                      .|.|-..|++.- ..++.+++++++.++..+  .....++ ..+..|-.+|.++....|-.|++.|..++...|..   +
T Consensus       266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v  338 (898)
T COG5240         266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V  338 (898)
T ss_pred             HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e
Confidence            455556666655 689999999999988743  1222222 35678888999999999999999999999877652   1


Q ss_pred             hccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhH
Q 042204          224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK  303 (559)
Q Consensus       224 ~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~  303 (559)
                      ..++  +.+-.++ .+.+..   .+.+++..|............-..+|.+++=+.++-.-+..+|++.|+.+...   .
T Consensus       339 ~vcN--~evEsLI-sd~Nr~---IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~---k  409 (898)
T COG5240         339 SVCN--KEVESLI-SDENRT---ISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS---K  409 (898)
T ss_pred             eecC--hhHHHHh-hccccc---chHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH---H
Confidence            1111  1122222 333322   34455555555443333333333344444333334344556666666655422   1


Q ss_pred             HHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204          304 IQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT  382 (559)
Q Consensus       304 ~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  382 (559)
                      ...     .+..|...|. .+.-+.+..+..+|..+....++..+     .+++.|...+...+-+   +-+..+|+-+.
T Consensus       410 ~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~---~I~vrIL~iLG  476 (898)
T COG5240         410 KLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYH---QITVRILGILG  476 (898)
T ss_pred             HHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchh---HHHHHHHHHhc
Confidence            111     1233333332 23344556666666666665544333     2344455555433222   22333333333


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHH
Q 042204          383 AGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKG  462 (559)
Q Consensus       383 ~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~  462 (559)
                      ...|..-.   -...+..+.+-+--++.-+|..|+.||+.++.+.+...    ....+...|-.++++.|.+++..|.-+
T Consensus       477 ~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrAsf~  549 (898)
T COG5240         477 REGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRASFL  549 (898)
T ss_pred             ccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence            21000000   00122333333333455666777777766655432111    112234455666677777777776666


Q ss_pred             HHHH
Q 042204          463 LENI  466 (559)
Q Consensus       463 l~~i  466 (559)
                      +.++
T Consensus       550 l~~~  553 (898)
T COG5240         550 LRNM  553 (898)
T ss_pred             HHhh
Confidence            6554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.014  Score=63.13  Aligned_cols=284  Identities=17%  Similarity=0.151  Sum_probs=172.6

Q ss_pred             CcHHHHHHhhcC-------CCCHHHHHHHHHHHHHHhcCC--chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 042204          142 GVVPRFVEFLMR-------EDYPQLQYEAAWALTNIASKT--SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNV  212 (559)
Q Consensus       142 g~v~~Lv~lL~~-------~~~~~~~~~a~~~L~nl~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  212 (559)
                      |+++.++..|.+       .+++.-+..|+++++++++--  ...-+..++.=+++.+...++++.-.+|..|+|.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            456666777762       123778899999999988521  11122334444567777788999999999999999999


Q ss_pred             hCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC---cHhhHhchHHHHHHhhccCCHhHHHHH
Q 042204          213 AGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP---IFEQVRPALPVLAQLVHSNDKEVLTDA  289 (559)
Q Consensus       213 ~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~~~l~~L~~lL~~~d~~v~~~a  289 (559)
                      +..+-.  +...-..++....+.|.++.+..++..|+.+|..+..+.+..   ....+.+.++.|+.+.+.-+.+.+..+
T Consensus       490 ~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             HhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            843222  222222356666777766888899999999999998887433   233456667777777776666666555


Q ss_pred             HHHHH-HhccCChhHHHHHHHhCcHHHHHHhhCC---CCCcchhh---HHHHHHHhhc---CChHHH--HHHHhCCChHH
Q 042204          290 CWALY-FLSNGKNDKIQAVIEAGVCPRLVELLGH---RSSSVLSP---ALQTIGHIVA---GDDFQT--QCIINCGALPY  357 (559)
Q Consensus       290 ~~~L~-~l~~~~~~~~~~~~~~g~l~~L~~lL~~---~~~~v~~~---al~~L~nl~~---~~~~~~--~~~~~~g~l~~  357 (559)
                      +..+. ..++.-......+.. .+.....+++..   .++..-..   |..+|..+.+   .-+...  -.-++.-+++.
T Consensus       568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v  646 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV  646 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            55442 222111111111111 234445555553   22333333   3333333322   111111  11233456777


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH
Q 042204          358 LLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ  431 (559)
Q Consensus       358 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  431 (559)
                      +-.+|++. -.++-.+++..+.+++...++.--.+.  ++++.+.+.+.....+--....-+|.|+...|.+..
T Consensus       647 i~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~  717 (1010)
T KOG1991|consen  647 IGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSL  717 (1010)
T ss_pred             HHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhh
Confidence            77788877 788888999888888764332212222  267788888888878888899999999988876643

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.81  E-value=0.00013  Score=57.67  Aligned_cols=95  Identities=15%  Similarity=0.324  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC
Q 042204          370 IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP  449 (559)
Q Consensus       370 v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  449 (559)
                      .|+.+.++|+.++.+-+..+...++. ++++++..+.+.|.+||..|+.+|.|++.....+...++-+  +++.|+.++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence            36778888888876655556666665 89999999999999999999999999998755555454443  7899999999


Q ss_pred             CCChHHHHHHHHHHHHHHH
Q 042204          450 CANPTIVTVCLKGLENILK  468 (559)
Q Consensus       450 ~~d~~v~~~~l~~l~~il~  468 (559)
                      +.|+.|+..+ +.|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999976655 67777764

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.79  E-value=7.3e-05  Score=58.53  Aligned_cols=86  Identities=33%  Similarity=0.495  Sum_probs=69.9

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          101 FAAMVAGV-WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       101 l~~lv~~L-~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      ||.|++.| +++++.++..++..|.++-.    +        .++|.|++++++++ +.+|..|+++|+.+..       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----~--------~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD----P--------EAIPALIELLKDED-PMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----H--------HHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----H--------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence            57889988 88999999999999986411    1        35899999998887 9999999999998843       


Q ss_pred             HHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHH
Q 042204          180 VVIDHGAVPIFVKLLASP-NDDIREQAVWALG  210 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~  210 (559)
                          ..+++.|.+++.++ +..++..|+++|+
T Consensus        61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ----PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                24789999988774 5667999999885

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.73  E-value=0.044  Score=55.95  Aligned_cols=290  Identities=12%  Similarity=0.175  Sum_probs=171.0

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204          187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ  266 (559)
Q Consensus       187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  266 (559)
                      .|.|-..|++.-..+.-.+++++..++...-.  +...+ ..+..|-.+| ..+....+-.|+.+|..|+...|...   
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv---  338 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV---  338 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee---
Confidence            35666667777777888888888887754311  11111 1233444444 66777888889999999998765332   


Q ss_pred             HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH
Q 042204          267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT  346 (559)
Q Consensus       267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  346 (559)
                       .-+-+-+-.++.+.+..+..+|+.+|..  .+.++.+..++..  ++..+.=++++=..+...|++.|++.....   .
T Consensus       339 -~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k---~  410 (898)
T COG5240         339 -SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLLFPSK---K  410 (898)
T ss_pred             -eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhhCcHH---H
Confidence             2223445566777777888888777654  3455555555432  444444444443445666777776654321   1


Q ss_pred             HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          347 QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       347 ~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      .     ..+..|...|......+.++.+..+++.+....|+....     +++.|+..+.+.++  .+.++..|+-+-..
T Consensus       411 ~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey--~~I~vrIL~iLG~E  478 (898)
T COG5240         411 L-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY--HQITVRILGILGRE  478 (898)
T ss_pred             H-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch--hHHHHHHHHHhccc
Confidence            2     234566666544437788999999999988776665444     45567777765433  34455555555443


Q ss_pred             CCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC
Q 042204          427 GSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE  506 (559)
Q Consensus       427 ~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~  506 (559)
                      +......    ...+..+.+-+--++.-++..|+.+|..+.-..+. .          ...+-+     ...+..+.++.
T Consensus       479 gP~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-~----------~~~~sv-----~~~lkRclnD~  538 (898)
T COG5240         479 GPRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISD-V----------VSPQSV-----ENALKRCLNDQ  538 (898)
T ss_pred             CCCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc-c----------ccHHHH-----HHHHHHHhhcc
Confidence            3110000    01233333333345677888888888775422111 0          012222     35677889999


Q ss_pred             CHHHHHHHHHHHHhhcC
Q 042204          507 NNEIHEKSVKILETYWC  523 (559)
Q Consensus       507 ~~~v~~~a~~il~~~f~  523 (559)
                      +++|+++|.-.++..-.
T Consensus       539 DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         539 DDEVRDRASFLLRNMRL  555 (898)
T ss_pred             cHHHHHHHHHHHHhhhh
Confidence            99999999999886643

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.71  E-value=0.03  Score=60.33  Aligned_cols=168  Identities=20%  Similarity=0.199  Sum_probs=124.4

Q ss_pred             hcCCCHHHHHHHHHHH-HHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCC
Q 042204          108 VWSDDNNLQLEATTKF-RKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGA  186 (559)
Q Consensus       108 L~s~~~~~~~~a~~~l-~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~  186 (559)
                      +.|++...+..|++.+ +.|..++  + .     ..++|.+++...+.+ .+++...-.-|-+++...|+..-.     +
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~--d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----a   93 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGE--D-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----A   93 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCC--C-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----H
Confidence            5666677777777544 4554443  2 1     125788888888666 899999999999999977743322     4


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204          187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ  266 (559)
Q Consensus       187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  266 (559)
                      ++.+.+=++++++.+|..|+++++.+- + ++     +-..+++++.+.+ .+++..++++|+.++..+-+-++  ....
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l~-~-~e-----l~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~--~l~~  163 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLLR-V-KE-----LLGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDK--DLYH  163 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhcC-h-HH-----HHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCH--hhhh
Confidence            678889999999999999999999872 1 11     1223577788887 77888999999999999987642  2233


Q ss_pred             HhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204          267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNG  299 (559)
Q Consensus       267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  299 (559)
                      ..|.+..+..++.+.||.+..+|+.+|..+-..
T Consensus       164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         164 ELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            355677778888899999999999999988643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.68  E-value=5.8e-05  Score=53.14  Aligned_cols=55  Identities=35%  Similarity=0.610  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 042204          157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNV  212 (559)
Q Consensus       157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  212 (559)
                      |.+|..|+|+|++++...++.... ....+++.|+.+|.++++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999998866665555 4457899999999999999999999999986

...

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.68  E-value=4.4e-05  Score=60.50  Aligned_cols=75  Identities=25%  Similarity=0.209  Sum_probs=43.3

Q ss_pred             hhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCCCCCccC-CCCC-CCchhhhhHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204           47 EACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLS-FAPA-PNLNLQTRLEIFAAMVAGVWSDDNNLQLEATT  121 (559)
Q Consensus        47 ~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~  121 (559)
                      .++++-+--=++.-+||+||||+|+|||++......... .... ...........+|.++..+.|+|+..|+.|+.
T Consensus        20 ~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   20 AEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGVNSDDPEVQLEATQ   96 (97)
T ss_dssp             HHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhcCCCCHHHHHHhhC
Confidence            344444433356669999999999999998654432211 0000 00101223357899999999999999999975

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0052  Score=66.93  Aligned_cols=150  Identities=15%  Similarity=0.229  Sum_probs=100.0

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH
Q 042204          185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF  264 (559)
Q Consensus       185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~  264 (559)
                      +++..|+..+++.+..++-.|+..++.++...|.  ..  ...++...+.++....+......+|.+|+.|+... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            5788888889999999999999999999987763  22  22356677777655556777889999999999876 1122


Q ss_pred             hhHhchHHHHHHhhccC--------CHhHHHHHHHHHHHhccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204          265 EQVRPALPVLAQLVHSN--------DKEVLTDACWALYFLSNGKN-DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI  335 (559)
Q Consensus       265 ~~~~~~l~~L~~lL~~~--------d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  335 (559)
                      .....++|.+..-+..+        ...|+..||.+++.++.... .....++..=.-..|..-+-+++-.+|..|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            33456778877777533        35688888777777774433 2222233221222344445667777888877776


Q ss_pred             HHhh
Q 042204          336 GHIV  339 (559)
Q Consensus       336 ~nl~  339 (559)
                      .-.+
T Consensus       496 qE~V  499 (1133)
T KOG1943|consen  496 QENV  499 (1133)
T ss_pred             HHHh
Confidence            5443

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.012  Score=58.01  Aligned_cols=223  Identities=17%  Similarity=0.103  Sum_probs=156.8

Q ss_pred             hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh---------hHHHHHHHhCcHHHHHHhhCCCCCcc------hhh
Q 042204          266 QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN---------DKIQAVIEAGVCPRLVELLGHRSSSV------LSP  330 (559)
Q Consensus       266 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~g~l~~L~~lL~~~~~~v------~~~  330 (559)
                      ..-.+++.|+.+|.+.+.+|....+..+..+++.+.         ..+..+++.++++.|++-+..-+.++      ...
T Consensus       122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~  201 (536)
T KOG2734|consen  122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN  201 (536)
T ss_pred             HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence            336789999999999999999999999999985421         45677888899999998877644444      345


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh---
Q 042204          331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ---  406 (559)
Q Consensus       331 al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~---  406 (559)
                      ++..+-|++.-.+.....+.+.|.+.+|+.-+... .-...+..|.-+++-+...+.+....+-.-+++..+++-+.   
T Consensus       202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk  281 (536)
T KOG2734|consen  202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK  281 (536)
T ss_pred             HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence            78889999998888888888889999998866432 14456677777777776665666666667778888887663   


Q ss_pred             cC------ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccccccc
Q 042204          407 NA------EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAI  480 (559)
Q Consensus       407 ~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~  480 (559)
                      ..      +.+.-.+...+|+.+..  .++....++....++...=++.. ....+..++.+|...+...+         
T Consensus       282 ~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~---------  349 (536)
T KOG2734|consen  282 RHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE---------  349 (536)
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC---------
Confidence            22      23556677777877776  45666666766666544434433 44556667777777663321         


Q ss_pred             CcchHHHHHHHHhccHHHHHHH
Q 042204          481 GDVNQYAQLVEEAEGLEKIENL  502 (559)
Q Consensus       481 ~~~~~~~~~i~~~g~l~~l~~L  502 (559)
                        ..++|..+-+.+|+..+-.+
T Consensus       350 --gt~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  350 --GTPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             --chHHHHHHHHHHhHHHHHHH
Confidence              22467777777777777766

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0045  Score=64.63  Aligned_cols=262  Identities=16%  Similarity=0.172  Sum_probs=149.8

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL  222 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  222 (559)
                      +...|.+.|++.+++.+++.++--|+-.+.++...       .+...+-..|...+.-.-+.|..++|-+--.+.. .+ 
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e-  484 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE-  484 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH-
Confidence            45566666666655667777766666555543221       1234455555555555556666666655432221 01 


Q ss_pred             hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHH--HhccCC
Q 042204          223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALY--FLSNGK  300 (559)
Q Consensus       223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~--~l~~~~  300 (559)
                           ++.-++..-...+...+.+-..--++-...+.       .+++=+.+-+++.+.|+-++.....++.  +...++
T Consensus       485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn  552 (929)
T KOG2062|consen  485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN  552 (929)
T ss_pred             -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence                 23333333323334444444332222222221       1234456667788888877776655443  333332


Q ss_pred             hhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204          301 NDKIQAVIEAGVCPRLVEL-LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS  379 (559)
Q Consensus       301 ~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  379 (559)
                      .         +++..|+.. .++.+..||..|.-+||-++..++++         ++..+.+|....++.||..|+.+|+
T Consensus       553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG  614 (929)
T KOG2062|consen  553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG  614 (929)
T ss_pred             h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence            2         356667766 56778899999999999998877755         4677778876669999999999999


Q ss_pred             HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 042204          380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN  452 (559)
Q Consensus       380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d  452 (559)
                      -.|+|+...  .     .+..|-.+..+...-||+-|+.++.-+....++.....  -.++.+.+.+.+..+.
T Consensus       615 IaCAGtG~~--e-----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKh  678 (929)
T KOG2062|consen  615 IACAGTGLK--E-----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKH  678 (929)
T ss_pred             hhhcCCCcH--H-----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhh
Confidence            998864331  1     22233334456666788888888887765444332222  1223444455554443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.52  E-value=0.026  Score=52.17  Aligned_cols=224  Identities=19%  Similarity=0.254  Sum_probs=147.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .+..+.+...++......+.+..|..+ .           ....+|.++..|...+ .|.+|.+|+.+|+++..  +   
T Consensus        37 ~i~~i~ka~~d~s~llkhe~ay~LgQ~-~-----------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---   99 (289)
T KOG0567|consen   37 AIKAITKAFIDDSALLKHELAYVLGQM-Q-----------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---   99 (289)
T ss_pred             HHHHHHHhcccchhhhccchhhhhhhh-c-----------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---
Confidence            456666666665445555666677664 2           2347899988887543 38899999999999984  2   


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCC----C-----------chhhhhhhccCCHHHHHHHhchhhhHh
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD----S-----------PRCRDLVLSEEALIPLLAQLNEHAKLS  243 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~----~-----------~~~r~~i~~~g~l~~Ll~ll~~~~~~~  243 (559)
                            ..++.+-++.+++...+++.|..++..+--.    .           |..+   ...+-+..+-..|.+.+.+.
T Consensus       100 ------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l  170 (289)
T KOG0567|consen  100 ------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPL  170 (289)
T ss_pred             ------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhH
Confidence                  4677788888888889999888888877411    1           1111   11122444444443333333


Q ss_pred             H-HHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC
Q 042204          244 M-LRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH  322 (559)
Q Consensus       244 ~-~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~  322 (559)
                      . +..+.+.|.|+-.          ...+..|.+-+..+..-.+..+..+++.|-..           -.++.|.+.|..
T Consensus       171 ~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d  229 (289)
T KOG0567|consen  171 FERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLD  229 (289)
T ss_pred             HHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHh
Confidence            3 3345566666533          33566677777777788889999999887522           135677777655


Q ss_pred             --CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204          323 --RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT  382 (559)
Q Consensus       323 --~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  382 (559)
                        ..+-||..|+.+||.|+.  +         ..++.|...+..+ .+-|++.+..+|..+-
T Consensus       230 ~~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~-~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  230 ETEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDE-ERVVRESCEVALDMLE  279 (289)
T ss_pred             hhcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence              457799999999999875  2         2356777788777 7778888777776553

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.50  E-value=0.00028  Score=46.07  Aligned_cols=39  Identities=36%  Similarity=0.773  Sum_probs=36.1

Q ss_pred             chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 042204          175 SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA  213 (559)
Q Consensus       175 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  213 (559)
                      ++++..+++.|+++.|++++.+++++++..++|+|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457888999999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.014  Score=57.61  Aligned_cols=223  Identities=13%  Similarity=0.114  Sum_probs=161.2

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCC----CC----chHHHHHhcCcHHHHHHhhcCCC-----CHHHHHHH
Q 042204           97 RLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIE----RS----PPIEEVIQSGVVPRFVEFLMRED-----YPQLQYEA  163 (559)
Q Consensus        97 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~----~~----~~~~~ii~~g~v~~Lv~lL~~~~-----~~~~~~~a  163 (559)
                      ++..++.++..|..++.++-...+..+..+.-.+    +.    ..++.+++.++++.|++.+.+-+     ...-.+.+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            3578889999999999999999888888875321    11    23778889999999999887543     12345667


Q ss_pred             HHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc----
Q 042204          164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN----  237 (559)
Q Consensus       164 ~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~----  237 (559)
                      +.++-|+..-.++....+++.|.+..|+.-+..  +-..-+..|...|+-+..++...+...-..+++..+++.+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            788889999899999999999999998884433  44556677888888888777777888888888999988873    


Q ss_pred             hh----hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh--hHHHHHHHhC
Q 042204          238 EH----AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN--DKIQAVIEAG  311 (559)
Q Consensus       238 ~~----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g  311 (559)
                      ++    ...++..+..-+|+.+...............++...-+++. ....+..++.+|-+...+++  .....+++..
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            11    24567788888888777665433333445556555545544 45567788888888886666  5566677777


Q ss_pred             cHHHHHHhh
Q 042204          312 VCPRLVELL  320 (559)
Q Consensus       312 ~l~~L~~lL  320 (559)
                      .+..++.+.
T Consensus       362 GLrtiF~~F  370 (536)
T KOG2734|consen  362 GLRTIFPLF  370 (536)
T ss_pred             hHHHHHHHH
Confidence            667666654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.12  Score=54.97  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=55.8

Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204          268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD  343 (559)
Q Consensus       268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  343 (559)
                      ....+.+-.++.+....+...+..++.++..........     .+..|-.+++++...+|-.|.++|..++...+
T Consensus       244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P  314 (865)
T KOG1078|consen  244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP  314 (865)
T ss_pred             hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence            456677777888889999999999999988655533222     57778888899999999999999999886544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.45  E-value=0.086  Score=54.37  Aligned_cols=312  Identities=14%  Similarity=0.104  Sum_probs=173.3

Q ss_pred             HHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCCC----chHHHHHhcCcHHHHHHhhcCC----C--CHHHHHHHHH
Q 042204          101 FAAMVAGVWS-----DDNNLQLEATTKFRKLLSIERS----PPIEEVIQSGVVPRFVEFLMRE----D--YPQLQYEAAW  165 (559)
Q Consensus       101 l~~lv~~L~s-----~~~~~~~~a~~~l~~lls~~~~----~~~~~ii~~g~v~~Lv~lL~~~----~--~~~~~~~a~~  165 (559)
                      +++++..+..     .+.+.....+..+.+++.....    .......+..++|.+.+..-..    .  ++.+-..+..
T Consensus        40 ~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~  119 (415)
T PF12460_consen   40 SIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSR  119 (415)
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHH
Confidence            3455555442     2455666667777776654321    2234444556888888776432    1  1456666666


Q ss_pred             HHHHHhcCCchhHHHHHhCCCHHHHHHhhC----------CCC--HHHHHHHHHHHHH-HhCCCchhhhhhhccCCHHHH
Q 042204          166 ALTNIASKTSEDTKVVIDHGAVPIFVKLLA----------SPN--DDIREQAVWALGN-VAGDSPRCRDLVLSEEALIPL  232 (559)
Q Consensus       166 ~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~----------~~~--~~v~~~a~~~L~n-l~~~~~~~r~~i~~~g~l~~L  232 (559)
                      ++..+...-+...+.-+    +..+..++-          ..+  .......+..+.. +++-.+.+.-. .....+..+
T Consensus       120 l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l  194 (415)
T PF12460_consen  120 LINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSL  194 (415)
T ss_pred             HHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHH
Confidence            66666664433333222    223333222          111  1122222222222 22222222100 111245666


Q ss_pred             HHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh-ccCCH----hHHHHHHHHHHHhccCChhHHHHH
Q 042204          233 LAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV-HSNDK----EVLTDACWALYFLSNGKNDKIQAV  307 (559)
Q Consensus       233 l~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~----~v~~~a~~~L~~l~~~~~~~~~~~  307 (559)
                      +.+.....+...+..++.+++.+...-+...  .....+..+..-+ ...+.    ....-..|...-+.-......   
T Consensus       195 ~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~---  269 (415)
T PF12460_consen  195 LNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA---  269 (415)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH---
Confidence            7766556667777788888887776532222  3344444444444 22233    333444455444442222121   


Q ss_pred             HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH--------HHHHHhC----CChHHHHHHhcCCCchhHHHHHH
Q 042204          308 IEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ--------TQCIINC----GALPYLLVLLIHSHKKSIKNHAC  375 (559)
Q Consensus       308 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~--------~~~~~~~----g~l~~L~~lL~~~~~~~v~~~a~  375 (559)
                        ..++..|+.+|.+  +.+...|.+.++-+....+..        .+.+...    .++|.|++..+.. +...|..-.
T Consensus       270 --~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL  344 (415)
T PF12460_consen  270 --TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYL  344 (415)
T ss_pred             --HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHH
Confidence              1356778888877  667788888888888763321        1222222    3567777777766 555788888


Q ss_pred             HHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204          376 WTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       376 ~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~  427 (559)
                      .+|+++..+.|..+-.---..++|.|++.|..+|.+++..++.++..+....
T Consensus       345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            8999998865544322112348999999999999999999999999999864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.45  E-value=0.23  Score=53.76  Aligned_cols=249  Identities=13%  Similarity=0.098  Sum_probs=161.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHH
Q 042204          195 ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVL  274 (559)
Q Consensus       195 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L  274 (559)
                      .+..|.+.-.+.|+++..+...+.......  -++...++.+..+..+.++..++.+++..|  ++.........++..|
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L  535 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGL  535 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHH
Confidence            345666666899999977654332222211  134455555555666777888888888888  3445555567788888


Q ss_pred             HHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC--CCCCcchhhHHHHHHHhhcCChHHHHHHHhC
Q 042204          275 AQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG--HRSSSVLSPALQTIGHIVAGDDFQTQCIINC  352 (559)
Q Consensus       275 ~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~  352 (559)
                      .++......++......+|+..+..+++. ....++.++|.++.+..  ++++.+...+..++-.++.....+  .-+..
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~--g~m~e  612 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY--GPMQE  612 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--cchHH
Confidence            88888888999999999999999888765 45666778888777753  356666666666666665422111  12223


Q ss_pred             CChHHHHHHhcCCCc----hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh-hcCChhHHHHHHHHHHHHhcCC
Q 042204          353 GALPYLLVLLIHSHK----KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL-QNAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       353 g~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~~a~~aL~nl~~~~  427 (559)
                      ..+|.|++.|..+ .    ......|+-.|.-+.++++.-....+-.-.+|.+.++. .++|..+-..+-.+|..+...+
T Consensus       613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            5789999999876 4    55666777778777775444343333333788888876 4567788888889998888774


Q ss_pred             CHHHHHHHHHcC-----ChHHHHhcCCCC
Q 042204          428 SHEQIKYLVREK-----CIKPLCDLLPCA  451 (559)
Q Consensus       428 ~~~~~~~l~~~~-----~l~~L~~lL~~~  451 (559)
                      .++....=.+.|     ++..+.+||+-.
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~  720 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPE  720 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcCCc
Confidence            333222222222     245556666543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.18  Score=56.12  Aligned_cols=230  Identities=13%  Similarity=0.050  Sum_probs=138.3

Q ss_pred             HHHHhchhhhHhHHHHHHHHHHHhhcCCCCC--cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204          232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRP--IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE  309 (559)
Q Consensus       232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  309 (559)
                      +.....++.+..+++.+...|..++...+..  ....+..+...|..-+++.+...+...+.+|..|.+..+.....++.
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3344445557788999999999999873211  12223455566666677778888999999998888665522233443


Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCC------ChHHHHHHh----cCCCchhHHHHHHHHHH
Q 042204          310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCG------ALPYLLVLL----IHSHKKSIKNHACWTIS  379 (559)
Q Consensus       310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g------~l~~L~~lL----~~~~~~~v~~~a~~~L~  379 (559)
                      .-+.+.++. +++.+..-+..|..+|-.|..     ++...+.|      .+..++.++    -.. ...+......++.
T Consensus       738 k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~  810 (1176)
T KOG1248|consen  738 KLIPEVILS-LKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAIT  810 (1176)
T ss_pred             HHHHHHHHh-cccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHH
Confidence            333344444 477777788888888777763     11111111      333333333    333 3333322234444


Q ss_pred             HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHH
Q 042204          380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVC  459 (559)
Q Consensus       380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~  459 (559)
                      .+.......+..-.-.+++..+.-.|.+..+++++.|+..+.-++..-+....... ...+++.+..+++.....++..+
T Consensus       811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kv  889 (1176)
T KOG1248|consen  811 HILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKV  889 (1176)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHH
Confidence            44321111111111123455566677889999999999999999887554444332 23477888888887788888888


Q ss_pred             HHHHHHHHHh
Q 042204          460 LKGLENILKV  469 (559)
Q Consensus       460 l~~l~~il~~  469 (559)
                      ...|..++..
T Consensus       890 r~LlekLirk  899 (1176)
T KOG1248|consen  890 RLLLEKLIRK  899 (1176)
T ss_pred             HHHHHHHHHH
Confidence            8888887754

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.16  Score=55.87  Aligned_cols=339  Identities=14%  Similarity=0.136  Sum_probs=183.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..+..+..++++.|..++-.|++.+.++.+.....-+++     ++...+.++...+.+..=..|+-+|+.++...----
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            467788888999999999999999999988743222444     445555555543334556688889999987432211


Q ss_pred             HHHHhCCCHHHHHHhhCC--------CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHh----chhhhHhHHH
Q 042204          179 KVVIDHGAVPIFVKLLAS--------PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL----NEHAKLSMLR  246 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll----~~~~~~~~~~  246 (559)
                      ..+.  .++|.+++-|.-        ....||+.|+.+++.++......  .+  .+++..|...|    ..+.+...++
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l--~p~l~~L~s~LL~~AlFDrevncRR  489 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL--KPVLQSLASALLIVALFDREVNCRR  489 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh--hHHHHHHHHHHHHHHhcCchhhHhH
Confidence            1111  245666655531        34678999999888887543221  10  11223233222    2566788899


Q ss_pred             HHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC---HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh-hCC
Q 042204          247 TATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND---KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL-LGH  322 (559)
Q Consensus       247 ~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l-L~~  322 (559)
                      .|..++-......+..     ..++    .++.+.|   ...+.++...++.-....+...+.+     +..++.. +.|
T Consensus       490 AAsAAlqE~VGR~~n~-----p~Gi----~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~H  555 (1133)
T KOG1943|consen  490 AASAALQENVGRQGNF-----PHGI----SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCH  555 (1133)
T ss_pred             HHHHHHHHHhccCCCC-----CCch----hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhccccc
Confidence            9888887766442111     1111    1222222   2223333333332222222222222     2333332 556


Q ss_pred             CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH---HHHHHHH---cC
Q 042204          323 RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE---QIQAVID---AG  396 (559)
Q Consensus       323 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~li~---~~  396 (559)
                      =+..+++.+.++|.+++...++    ......++.+++...+. +...|.....+.+.++.+...   ....+.+   ++
T Consensus       556 Wd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~  630 (1133)
T KOG1943|consen  556 WDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG  630 (1133)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence            6788999999999998765442    33446788888888777 777777666666655432110   1111111   11


Q ss_pred             ---CHHHHHHH-hhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          397 ---LIGPLINL-LQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       397 ---~i~~Li~l-L~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                         +++.+... +..+ ..-.+...+..+.++.... .......+..+.-..+.+.+..++ .++..+.+++..+...
T Consensus       631 l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~  706 (1133)
T KOG1943|consen  631 LLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST  706 (1133)
T ss_pred             hhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence               23333332 2222 1344555666666666543 222223333334444555554444 6677777777766543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.32  E-value=0.00061  Score=44.40  Aligned_cols=39  Identities=41%  Similarity=0.693  Sum_probs=35.1

Q ss_pred             chHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204          133 PPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus       133 ~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  172 (559)
                      +.+..+++.|+++.|++++.+++ ++++..|+|+|.||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC
Confidence            46778889999999999999877 8999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.28  E-value=0.0018  Score=64.22  Aligned_cols=295  Identities=16%  Similarity=0.133  Sum_probs=156.2

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHh-----CCCchhhhhhhccCCHH--
Q 042204          158 QLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA-----GDSPRCRDLVLSEEALI--  230 (559)
Q Consensus       158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~r~~i~~~g~l~--  230 (559)
                      .+|.++..+|..++..-.-.+...+  .....+...+....+.++..+..++-.+-     .+.|...+.-...+.+-  
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            5788888888888874332232222  23344445566788999999988887764     23333211111111111  


Q ss_pred             ----HHHHHhchhhhHhHHHHHHHHHHHhhcCC----CCCcHhhHhchHHHHH-HhhccCCHhHHHHHHHHHHHhccCCh
Q 042204          231 ----PLLAQLNEHAKLSMLRTATWTLSNFCRGM----PRPIFEQVRPALPVLA-QLVHSNDKEVLTDACWALYFLSNGKN  301 (559)
Q Consensus       231 ----~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~----~~~~~~~~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~l~~~~~  301 (559)
                          +.-....++.....+..+|-+++++....    |+...    ...+.+. ..-.+.+.-+...|++++.-+.-+..
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~----T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~  423 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQ----TLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC  423 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcch----hhhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence                11112223334556777888888887543    22111    1111111 11122334467788888877775555


Q ss_pred             hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----C---hHHHHHHHhCCChHHHHHHh--cCCCchhHHH
Q 042204          302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG----D---DFQTQCIINCGALPYLLVLL--IHSHKKSIKN  372 (559)
Q Consensus       302 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~---~~~~~~~~~~g~l~~L~~lL--~~~~~~~v~~  372 (559)
                      -+.....-......+...+.+..-..|..+.|++|||...    .   +.+...+... .+..+...-  .+..+.+|+.
T Consensus       424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~  502 (728)
T KOG4535|consen  424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKS  502 (728)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhh
Confidence            4444444444566677777777778899999999999751    1   1222222221 122222221  1222678999


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHcCC-------HHHHHHH-hhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHH
Q 042204          373 HACWTISKITAGNREQIQAVIDAGL-------IGPLINL-LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPL  444 (559)
Q Consensus       373 ~a~~~L~nl~~~~~~~~~~li~~~~-------i~~Li~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L  444 (559)
                      .|..+|+|+..    ..+.+.+.+.       +..++.. .-....+||=+||++++|+..+..-.....=.-..+.+.|
T Consensus       503 navraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L  578 (728)
T KOG4535|consen  503 NAVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNAL  578 (728)
T ss_pred             HHHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHH
Confidence            99999999853    2333333221       1111111 1234678999999999999986421110000011245667


Q ss_pred             HhcCCC-CChHHHHHHHHHH
Q 042204          445 CDLLPC-ANPTIVTVCLKGL  463 (559)
Q Consensus       445 ~~lL~~-~d~~v~~~~l~~l  463 (559)
                      +.++.+ .+-+|+.++..+|
T Consensus       579 ~~Lv~~~~NFKVRi~AA~aL  598 (728)
T KOG4535|consen  579 TSLVTSCKNFKVRIRAAAAL  598 (728)
T ss_pred             HHHHHHhccceEeehhhhhh
Confidence            776633 4445555554444

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.28  E-value=0.12  Score=55.68  Aligned_cols=305  Identities=11%  Similarity=0.060  Sum_probs=177.3

Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHH
Q 042204          110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPI  189 (559)
Q Consensus       110 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~  189 (559)
                      +.-+.....+.+.+.+..+..  .....+. .-++...+..+.-+..+-++..|+++++..++  .+.... ...+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence            344555556777777654431  1111111 11334445555544446788888888887774  222211 12367888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHh
Q 042204          190 FVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN-EHAKLSMLRTATWTLSNFCRGMPRPIFEQVR  268 (559)
Q Consensus       190 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~  268 (559)
                      |.++....+.++--..+.+|+..+..+|+.... .+.-+.+.++.++. .+.|+.+...+--++-.++... .....+..
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            888888888999999999999999888875433 23344555555543 4456767666767777776632 12223446


Q ss_pred             chHHHHHHhhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCCh
Q 042204          269 PALPVLAQLVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDD  343 (559)
Q Consensus       269 ~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~  343 (559)
                      ..+|.++..+..++    .....-++..|..+.++.+.-....+-.-++|.+.++.-| ++......+-.||..+...+.
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            78999999998665    5556666666666665443322233333467888887655 556678888889988888776


Q ss_pred             HHHHHHHhCCCh------HHHHHHhcCCCchhHHHHHHHHHHHh----hcCCHHHHHHHHHcCCHHHHHHHh-hcCChhH
Q 042204          344 FQTQCIINCGAL------PYLLVLLIHSHKKSIKNHACWTISKI----TAGNREQIQAVIDAGLIGPLINLL-QNAEINI  412 (559)
Q Consensus       344 ~~~~~~~~~g~l------~~L~~lL~~~~~~~v~~~a~~~L~nl----~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v  412 (559)
                      ++...--+.++.      ..+..+|+    ++.-..++..++.+    +.+-+..+...++. ++...+.-| +.....+
T Consensus       693 eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsv  767 (1005)
T KOG2274|consen  693 EQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSV  767 (1005)
T ss_pred             HHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHH
Confidence            665444333333      33334443    33333333333333    32222222222222 333334333 3456788


Q ss_pred             HHHHHHHHHHHhcCC
Q 042204          413 KNWAAWAISNATSGG  427 (559)
Q Consensus       413 ~~~a~~aL~nl~~~~  427 (559)
                      ....+.++++++...
T Consensus       768 iQsLi~VfahL~~t~  782 (1005)
T KOG2274|consen  768 IQSLIMVFAHLVHTD  782 (1005)
T ss_pred             HHHHHHHHHHHhhCC
Confidence            888888899888763

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.28  E-value=0.057  Score=55.96  Aligned_cols=228  Identities=14%  Similarity=0.106  Sum_probs=144.6

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-----DYPQLQYEAAWALTNIASKTSEDTKVVID  183 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  183 (559)
                      .+.++....+|+++|.+++-.. ...++.+.+.|..+.+++.|+..     + .++.+-..++|.-++...++.+..+++
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~  119 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE  119 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence            4567899999999999998764 66678888999999999999876     4 799999999999999888888877776


Q ss_pred             C-CCHHHHHHhhCC-----------------CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh------
Q 042204          184 H-GAVPIFVKLLAS-----------------PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH------  239 (559)
Q Consensus       184 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~------  239 (559)
                      . +++..+...|..                 .+......++..+.|+..+.+.... -.....++.++.++..-      
T Consensus       120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence            5 677777665532                 1344566788899999866554322 01233455555554322      


Q ss_pred             --hhHhHHHHHHHHHHHhhcCCCC--------C----cHhhHhchHHHHHHhhc----cC----CHhHHHHHHHHHHHhc
Q 042204          240 --AKLSMLRTATWTLSNFCRGMPR--------P----IFEQVRPALPVLAQLVH----SN----DKEVLTDACWALYFLS  297 (559)
Q Consensus       240 --~~~~~~~~a~~~L~nL~~~~~~--------~----~~~~~~~~l~~L~~lL~----~~----d~~v~~~a~~~L~~l~  297 (559)
                        +.......++.+|.|+-.....        .    ........+..|+.+|.    ..    -.+.....+.+|..++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence              2234566677777777211100        0    00011234445555543    11    2467888888999988


Q ss_pred             cCChhHHHHHHHhCc-----------------HHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204          298 NGKNDKIQAVIEAGV-----------------CPRLVELLGHRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       298 ~~~~~~~~~~~~~g~-----------------l~~L~~lL~~~~~~v~~~al~~L~nl~~  340 (559)
                      ..+... +..+...+                 -.+|+.++.+..+.++..+...+-.+|.
T Consensus       279 ~~~~~~-Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  279 RAAREV-RKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HhcHHH-HHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            765433 44444433                 3445555555555555555555555544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.24  E-value=0.0014  Score=51.82  Aligned_cols=67  Identities=21%  Similarity=0.397  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHHHHhCCCchhhhhhhc
Q 042204          159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL--ASPNDDIREQAVWALGNVAGDSPRCRDLVLS  225 (559)
Q Consensus       159 ~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~  225 (559)
                      ++...+++|+|++..++...+.+.+.|++|.+++.-  ...+|-+++.|+|++-|++..+++.+..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            356678999999999999999999999999999864  4588999999999999999999998777654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.03  Score=59.24  Aligned_cols=284  Identities=17%  Similarity=0.148  Sum_probs=146.1

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL  222 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  222 (559)
                      ..+.+-.+|.+.. ..+..+|++++.++...++....     .++..|-.++.++...+|-.|+++|..+|...|..   
T Consensus       246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---  316 (865)
T KOG1078|consen  246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---  316 (865)
T ss_pred             HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---
Confidence            4455556666667 78999999999988874433222     27788888899999999999999999998766642   


Q ss_pred             hhccC-CHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 042204          223 VLSEE-ALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN  301 (559)
Q Consensus       223 i~~~g-~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  301 (559)
                      +...+ -+..++    .+.+..   .+..++..|..............-++.++.=+.++..-+..+++.+|+...   +
T Consensus       317 v~~cN~elE~lI----td~Nrs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p  386 (865)
T KOG1078|consen  317 VTVCNLDLESLI----TDSNRS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---P  386 (865)
T ss_pred             ccccchhHHhhh----cccccc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---c
Confidence            11111 122222    222222   233333333332222222222222222332233333344555555555443   2


Q ss_pred             hHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204          302 DKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK  380 (559)
Q Consensus       302 ~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  380 (559)
                      ..     ..+.+..|..+|.. +.-+.+.....+|..++..++....     .++..|...+.+.   ....-+...|.-
T Consensus       387 ~k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhl  453 (865)
T KOG1078|consen  387 RK-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHL  453 (865)
T ss_pred             HH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHH
Confidence            11     11334555555554 2334556666666666665554433     3344555555433   233334444444


Q ss_pred             hhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHH
Q 042204          381 ITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCL  460 (559)
Q Consensus       381 l~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l  460 (559)
                      +....|.   .......+..+.+.+--.+..++..|..++.++.... +.     ....+...|..++.+.|.+++..|.
T Consensus       454 LG~EgP~---a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~-~~-----l~~sI~vllkRc~~D~DdevRdrAt  524 (865)
T KOG1078|consen  454 LGKEGPK---APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQD-VV-----LLPSILVLLKRCLNDSDDEVRDRAT  524 (865)
T ss_pred             HhccCCC---CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC-CC-----ccccHHHHHHHHhcCchHHHHHHHH
Confidence            4321000   0001123333444444456667777777777776321 11     1122445566666777777777777


Q ss_pred             HHHHHHH
Q 042204          461 KGLENIL  467 (559)
Q Consensus       461 ~~l~~il  467 (559)
                      -.+..+.
T Consensus       525 f~l~~l~  531 (865)
T KOG1078|consen  525 FYLKNLE  531 (865)
T ss_pred             HHHHHhh
Confidence            6666655

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.19  E-value=0.017  Score=61.25  Aligned_cols=224  Identities=13%  Similarity=0.064  Sum_probs=153.0

Q ss_pred             hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC-HhHHHHHHHHHHHh
Q 042204          218 RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND-KEVLTDACWALYFL  296 (559)
Q Consensus       218 ~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~l  296 (559)
                      .-|...+..|+...|+++. ....+..+.....+|.-    .-.-........++.+...++.+. .--...++.++.||
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL  569 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNL  569 (748)
T ss_pred             HhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence            3466777889999999988 44445666666666661    101111112344555555554332 12235688899999


Q ss_pred             ccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC-CChHHHHHHhcCCCchhHHHHHH
Q 042204          297 SNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC-GALPYLLVLLIHSHKKSIKNHAC  375 (559)
Q Consensus       297 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~v~~~a~  375 (559)
                      +..+....+.++..-.++.+-.++...++..+..++..+.||..++.-....+.+. ..++.....+... ......+++
T Consensus       570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a  648 (748)
T KOG4151|consen  570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA  648 (748)
T ss_pred             cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence            97777666778888788888888888999999999999999999887776777773 5566666666555 777777777


Q ss_pred             HHHHHhhcCCHHHHHH-HHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC
Q 042204          376 WTISKITAGNREQIQA-VIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL  448 (559)
Q Consensus       376 ~~L~nl~~~~~~~~~~-li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  448 (559)
                      .++..|+.-....+.. .--......+..++.++++++|...+..+.|+.. +..+....+.....+..+..+-
T Consensus       649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~~  721 (748)
T KOG4151|consen  649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGLQ  721 (748)
T ss_pred             ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHHH
Confidence            7777676644444442 2233467888999999999999999999999554 3556666666655555555443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.29  Score=53.54  Aligned_cols=361  Identities=13%  Similarity=0.115  Sum_probs=197.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.+.-.++|+---.+-.|++.+..+.+.+-.++   ..-..++....++|..++.--++.+|+-+|..+.+.......
T Consensus       463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~---~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e  539 (1010)
T KOG1991|consen  463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP---NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE  539 (1010)
T ss_pred             HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence            34445556677777899999999999754432222   122335666777777433368999999999999885443323


Q ss_pred             HHHh--CCCHHHHHHhhCCCCHHHHHHHHH-HHHHHhCCCchhhhhhhccCCHHHHHHHhch----hh-hHhHHHHHHHH
Q 042204          180 VVID--HGAVPIFVKLLASPNDDIREQAVW-ALGNVAGDSPRCRDLVLSEEALIPLLAQLNE----HA-KLSMLRTATWT  251 (559)
Q Consensus       180 ~i~~--~g~i~~L~~lL~~~~~~v~~~a~~-~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~----~~-~~~~~~~a~~~  251 (559)
                      .+-.  .+.++.|+++.+.-+.+....++. .++..+..-..+.-.+ .......+++++..    +. +.+-.-.|.++
T Consensus       540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi  618 (1010)
T KOG1991|consen  540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGI  618 (1010)
T ss_pred             hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence            2222  245556666666533333222322 2233332211111111 11233445555532    11 11112223333


Q ss_pred             HHHh---hcCC---CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC
Q 042204          252 LSNF---CRGM---PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS  325 (559)
Q Consensus       252 L~nL---~~~~---~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~  325 (559)
                      |..+   ...-   |..-......++|++-..|+++-.++-..++..+.+++....+....+.  |+++.+.+.+.....
T Consensus       619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~  696 (1010)
T KOG1991|consen  619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGI  696 (1010)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhH
Confidence            3332   2211   2122223355677777788888888888888888888765544433343  568888888888777


Q ss_pred             cchhhHHHHHHHhhcCChHHHHHHHhCC-----ChHHHHHHhcCCC-chhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHH
Q 042204          326 SVLSPALQTIGHIVAGDDFQTQCIINCG-----ALPYLLVLLIHSH-KKSIKNHACWTISKITAGNREQIQAVIDAGLIG  399 (559)
Q Consensus       326 ~v~~~al~~L~nl~~~~~~~~~~~~~~g-----~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~  399 (559)
                      ..-....-+|.|+++....   .+...+     ++..+..+|.+.. ...-...|+..+.-+.......++..+.. ++.
T Consensus       697 dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~  772 (1010)
T KOG1991|consen  697 DYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL-FLE  772 (1010)
T ss_pred             HHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH-HHH
Confidence            7777888888888875432   222221     2334444554421 22334446776666654211133332221 233


Q ss_pred             HHHHHhhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-----CCChHHHHHHHHHHHHHHHhh
Q 042204          400 PLINLLQN--AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-----CANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       400 ~Li~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-----~~d~~v~~~~l~~l~~il~~~  470 (559)
                      ..+..+..  .+...+..++..+.|............|-+.|+...+-.+.-     .....-++.|+-+|..++..+
T Consensus       773 ~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~  850 (1010)
T KOG1991|consen  773 LALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLG  850 (1010)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence            33333333  456788888888877777656777778778887655444331     111223456666777777765

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.0015  Score=64.81  Aligned_cols=270  Identities=19%  Similarity=0.152  Sum_probs=143.7

Q ss_pred             HhcCCCHHHHHHHHHHHHHhccCC----CCchHHHHHhcCcHH-HHH------HhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204          107 GVWSDDNNLQLEATTKFRKLLSIE----RSPPIEEVIQSGVVP-RFV------EFLMREDYPQLQYEAAWALTNIASKTS  175 (559)
Q Consensus       107 ~L~s~~~~~~~~a~~~l~~lls~~----~~~~~~~ii~~g~v~-~Lv------~lL~~~~~~~~~~~a~~~L~nl~~~~~  175 (559)
                      .+...+++.++.+++.+.++...-    .+++.+.-...|.+- .+.      ..-++.. +..+..++.++.+|.....
T Consensus       303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~f  381 (728)
T KOG4535|consen  303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEAF  381 (728)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchhh
Confidence            345667888888888888765321    122222222222111 111      0111222 4667777777777766321


Q ss_pred             hhHHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          176 EDTKVVIDHGAVPIFV-KLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       176 ~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      +.-..=.+ -..+.+. ..-.+++.-++..|+++++-+.-+...-.+...-.+....++..+ .+.....+..+.|++.|
T Consensus       382 ~~lpn~~~-T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~Kaawtlgn  459 (728)
T KOG4535|consen  382 SNLPNDRQ-TLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGN  459 (728)
T ss_pred             cCCCCcch-hhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhh
Confidence            11000000 0111111 121234455666777777766554332223333333455555555 45566788899999999


Q ss_pred             hhcCC----CCCcHhh--H-hchHHHHHHhh---ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhC-------cHHHHH
Q 042204          255 FCRGM----PRPIFEQ--V-RPALPVLAQLV---HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAG-------VCPRLV  317 (559)
Q Consensus       255 L~~~~----~~~~~~~--~-~~~l~~L~~lL---~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-------~l~~L~  317 (559)
                      ++..-    |.+....  . ...+..+...-   ..++..|..++.++|+|+...    .+.+.+.+       .+..+.
T Consensus       460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~  535 (728)
T KOG4535|consen  460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALI  535 (728)
T ss_pred             hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcc
Confidence            98532    4433222  1 22222232222   234678999999999998832    22222221       111211


Q ss_pred             Hh-hCCCCCcchhhHHHHHHHhhcCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          318 EL-LGHRSSSVLSPALQTIGHIVAGDDF-QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       318 ~l-L~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      .. .-.....|+..||+++||+..+..- ....-....+++.|..++.+..+.+||..|+.+|.--..
T Consensus       536 ~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  536 STVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            11 2224567999999999999986542 111112234577788888665589999999999876643

>PRK14707 hypothetical protein; Provisional

Probab=97.10  E-value=0.53  Score=55.66  Aligned_cols=348  Identities=18%  Similarity=0.123  Sum_probs=200.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHH
Q 042204          152 MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALI  230 (559)
Q Consensus       152 ~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~  230 (559)
                      +.+++++.+..+....+-++. ++..+..+ +...|..+++-++. ++..-.++++..|.....+....+..+ +...+.
T Consensus       174 Kw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va  250 (2710)
T PRK14707        174 KWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELG  250 (2710)
T ss_pred             cCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHH
Confidence            345556777777777677776 44555444 45566666666665 443334445555555444434444443 333456


Q ss_pred             HHHHHhchhhhHhHHHHHHHHHH-HhhcCCCCCcHhhH-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHH
Q 042204          231 PLLAQLNEHAKLSMLRTATWTLS-NFCRGMPRPIFEQV-RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVI  308 (559)
Q Consensus       231 ~Ll~ll~~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  308 (559)
                      ..++.|.+-++......++.++. .+... +.....+. ..+-..|..+-+..|..+-..+...|..=.-.+.+..+.+-
T Consensus       251 ~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~  329 (2710)
T PRK14707        251 NALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN  329 (2710)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc
Confidence            66666655556555555554444 34433 22222222 23334444455567777766665555443333554444443


Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH
Q 042204          309 EAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ  388 (559)
Q Consensus       309 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  388 (559)
                      ..++-..|-.+-+-++..+...|...|.--...++...+.+--.|+-..|-.+-+-+ +..+...|+..|..-..++++.
T Consensus       330 ~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l  408 (2710)
T PRK14707        330 ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLEL  408 (2710)
T ss_pred             hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhh
Confidence            334444444444457766777777666655555665554333334444444444556 6667777776666555577777


Q ss_pred             HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                      .+.+-..|+-..|-.+-+-++..+...++.+|.--..+ +++....|--.++...|-.+-+.+|..+...+.+.|..-+.
T Consensus       409 ~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~  487 (2710)
T PRK14707        409 RKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA  487 (2710)
T ss_pred             hhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence            66666555555555555678888888888888766554 56666655555666677777788998877766666655453


Q ss_pred             hhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 042204          469 VGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL  518 (559)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il  518 (559)
                      ....             .++-|.-.+....|..|...++...+..|..-|
T Consensus       488 ~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~l  524 (2710)
T PRK14707        488 HERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASAL  524 (2710)
T ss_pred             ccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence            3222             344455555667777888888877666655443

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.10  E-value=0.0037  Score=66.90  Aligned_cols=190  Identities=17%  Similarity=0.143  Sum_probs=129.9

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh-------------hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC-------------RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL  252 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L  252 (559)
                      +-..|+.+|++  +++-..++.++.-+..|++..             |+.+. ..+++.++..+. ..+...+.+...+|
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL  891 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence            34566777765  344556777777777666543             22221 235777777774 55566778888899


Q ss_pred             HHhhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC---Ccch
Q 042204          253 SNFCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS---SSVL  328 (559)
Q Consensus       253 ~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~  328 (559)
                      +++..+-|.... .....++|.|++.|.-.|..++..++.++.-+....+.....-++ -++|.+..+=.+.+   ..+|
T Consensus       892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence            998886654322 234678899999999999999999999998887655544333332 36777777766554   4689


Q ss_pred             hhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204          329 SPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI  381 (559)
Q Consensus       329 ~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl  381 (559)
                      ..|+.+|..+.+.-+...-....-.++..|...|.++ ..-||++|..+=.+.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence            9999999999984443222233336788899999998 889999998765443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.08  E-value=0.051  Score=53.34  Aligned_cols=192  Identities=18%  Similarity=0.206  Sum_probs=124.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--Cc
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK--TS  175 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~--~~  175 (559)
                      .+...+..+.......+..++..+.+++...  ...+.+.  ...++..+.+.++.+. .+-+..|+++++-++-.  ..
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence            4778888888888999999999999998763  2223332  2347888889998887 57777788877776552  22


Q ss_pred             hhHHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHHHHhC---CCchhhhhhhccCCHHHHHH--Hhch---------h
Q 042204          176 EDTKVVIDHGAVPIFVKLLASP--NDDIREQAVWALGNVAG---DSPRCRDLVLSEEALIPLLA--QLNE---------H  239 (559)
Q Consensus       176 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~---~~~~~r~~i~~~g~l~~Ll~--ll~~---------~  239 (559)
                      .....+++ ...|.|.+.+.+.  ...+|..|+.+|+-++.   ..+..-...+  ..+..+..  ....         .
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCC
Confidence            34444444 5778888888763  45677777777777653   2222111000  11221111  1111         1


Q ss_pred             hhHhHHHHHHHHHHHhhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204          240 AKLSMLRTATWTLSNFCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLS  297 (559)
Q Consensus       240 ~~~~~~~~a~~~L~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  297 (559)
                      ++..+...|+.+.+-|...-|.... ......+|.|..+|.++|.+|+..|-.+|.-|.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            2345777777666666655443222 345778999999999999999999999887775

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PRK14707 hypothetical protein; Provisional

Probab=97.08  E-value=0.62  Score=55.12  Aligned_cols=401  Identities=16%  Similarity=0.093  Sum_probs=216.0

Q ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          102 AAMVAGVW--SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       102 ~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .-+++.+.  .++.+.+ .++..|...++.+ ...++.+-..|+...|-.+-+-+++++.+..+...-..++. ....+.
T Consensus       166 ~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~~  242 (2710)
T PRK14707        166 SLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLRN  242 (2710)
T ss_pred             HHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHHH
Confidence            34444443  2333333 3445555555543 33444444444444454555567756666555544445555 444444


Q ss_pred             HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          180 VVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      .+ +...+-..++.|+. ++.....+++.+|..=..+.+..+..+-.. .+...++-|.+-.+..+-+.+...|..=...
T Consensus       243 ~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~  320 (2710)
T PRK14707        243 EL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLAD  320 (2710)
T ss_pred             hC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence            43 33445555555554 666666666666655444555555544322 3445555665666666666655555543333


Q ss_pred             CCCCcHhhH-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          259 MPRPIFEQV-RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       259 ~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      ++.....+. .++-..|..+-+.+|..+-..+..+|..=...+++..+.+--.|+-..|-.+-+-++..+...|...|..
T Consensus       321 d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~  400 (2710)
T PRK14707        321 DPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAE  400 (2710)
T ss_pred             cHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence            333222222 2333344444456666666555555554443455554555444554445455555776666777777765


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA  417 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~  417 (559)
                      -..++.+..+.+-..|+-..|..+-+-+ +..+...++..|.--...+.+..+.+--.++...|-.+-+-+|..+-..|+
T Consensus       401 ~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa  479 (2710)
T PRK14707        401 HVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTA  479 (2710)
T ss_pred             HhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHH
Confidence            5556666554444445555555555566 777777777777766667777666554444444444444567777777777


Q ss_pred             HHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHH-HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccH
Q 042204          418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV-CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL  496 (559)
Q Consensus       418 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~-~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l  496 (559)
                      ..|..-... +++....|--+++...|-.+-+.+|...... +.+....+.. .             ......|..-+..
T Consensus       480 ~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~-------------~~l~~~~~~~~~~  544 (2710)
T PRK14707        480 SALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-E-------------LQLRKAFDAHQVV  544 (2710)
T ss_pred             HHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-c-------------hhhhhhhhhHHHH
Confidence            766554443 4455555444556666777777777654333 3333333331 1             1123334444455


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          497 EKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       497 ~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      ..+..|..+++.+..+.|..-|-..+.
T Consensus       545 ~~lnalSKwp~s~~C~~A~~~iA~~l~  571 (2710)
T PRK14707        545 NTLKALSKWPDKQLCAVAASGLAERLA  571 (2710)
T ss_pred             HHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence            666677778877777776665555443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.07  E-value=0.015  Score=57.35  Aligned_cols=212  Identities=12%  Similarity=0.089  Sum_probs=142.8

Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh-----hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR-----DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r-----~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      .+...+.+..|+..|..-+-+.+..+...++++.......+     +.+... .-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            45556889999999999899999999999999986544332     233322 122233333333456666666667777


Q ss_pred             hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhhCCCCCcchhhH
Q 042204          255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELLGHRSSSVLSPA  331 (559)
Q Consensus       255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~a  331 (559)
                      .++..+-.........+-.+...+..++-++..+|..++..+..........++..   .++.....+|.+++--++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            76654323333335566667788888999999999999999887666665666655   356778888999888899999


Q ss_pred             HHHHHHhhcCChHH---HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHH
Q 042204          332 LQTIGHIVAGDDFQ---TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVI  393 (559)
Q Consensus       332 l~~L~nl~~~~~~~---~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li  393 (559)
                      +..||.+.......   ...+-+..-+..++.+|++. +..+|-+|..++--+.+.  .+..+..++
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL  295 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDIL  295 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence            99999998754432   23333446688899999999 999999999999888773  333444443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.03  E-value=0.025  Score=50.77  Aligned_cols=93  Identities=17%  Similarity=0.206  Sum_probs=73.6

Q ss_pred             CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHH
Q 042204          324 SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLIN  403 (559)
Q Consensus       324 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~  403 (559)
                      ++.+|..++.++|.++..-+...+     ..++.+...|.++ ++.||+.|+.+|+.+...+.-..    +..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence            356888999999999886665444     5578999999999 99999999999999976422111    1124467788


Q ss_pred             HhhcCChhHHHHHHHHHHHHhcC
Q 042204          404 LLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       404 lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      ++.+++++++..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999886

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.01  E-value=0.0055  Score=48.49  Aligned_cols=93  Identities=14%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc
Q 042204          328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN  407 (559)
Q Consensus       328 ~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~  407 (559)
                      |..++.+|..++.+-.......++ .++++++..+.++ +..||..||.+|.|++......+-.... .+++.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~-~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFN-EIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence            456677777777665555444444 5788999999998 9999999999999998643333322222 388999999999


Q ss_pred             CChhHHHHHHHHHHHHh
Q 042204          408 AEINIKNWAAWAISNAT  424 (559)
Q Consensus       408 ~~~~v~~~a~~aL~nl~  424 (559)
                      .++.||..| ..|-++.
T Consensus        80 ~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CchhHHHHH-HHHHHHh
Confidence            999988766 5554443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.96  E-value=0.17  Score=50.04  Aligned_cols=205  Identities=12%  Similarity=0.102  Sum_probs=144.9

Q ss_pred             HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH-----HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204          305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF-----QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS  379 (559)
Q Consensus       305 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-----~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  379 (559)
                      +.+...+++..|+..|..-+-+.+..+..+.+++......     ..+.+.. ..-+.+..++..-+++++--.+...|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence            5667778999999999888888899999999999875422     2233332 323334444433225566666666666


Q ss_pred             HhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc---CChHHHHhcCCCCChHHH
Q 042204          380 KITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVRE---KCIKPLCDLLPCANPTIV  456 (559)
Q Consensus       380 nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~d~~v~  456 (559)
                      .++. .+...+.++....+..+.+.++.++.++...|...+..+... .+.....++..   .++..+..+|.+++--++
T Consensus       149 ec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            6654 466677888888899999999999999999999999998775 34454444443   346788889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          457 TVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       457 ~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      ..++..|+.++-....          .+-....+.+..-+..+..|..++...|+-.|..+..-|.
T Consensus       227 rqslkLL~ellldr~n----------~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV  282 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSN----------FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV  282 (335)
T ss_dssp             HHHHHHHHHHHHSGGG----------HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhH----------HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence            9999999999954332          2334566777778889999999999999999998877543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.84  E-value=0.0081  Score=47.59  Aligned_cols=67  Identities=16%  Similarity=0.260  Sum_probs=56.7

Q ss_pred             chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204          327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-SHKKSIKNHACWTISKITAGNREQIQAVI  393 (559)
Q Consensus       327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~li  393 (559)
                      .+...+++|+|++..+....+.+.+.|+++.+++...- +.+|-+|+-|.|++.|++.+++++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            45678999999999999888899999999999987642 22799999999999999999888766554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.81  E-value=0.039  Score=47.51  Aligned_cols=131  Identities=15%  Similarity=0.093  Sum_probs=98.3

Q ss_pred             HHHHHHhCcHHHHHHhhCCCCC------cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHH
Q 042204          304 IQAVIEAGVCPRLVELLGHRSS------SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACW  376 (559)
Q Consensus       304 ~~~~~~~g~l~~L~~lL~~~~~------~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~  376 (559)
                      .+.++..+++..|++++.++..      .+...++.++..+..... .....++..++..+........ +..+...|..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            3567888999999999987653      445556777666665432 2233455566778888886553 5789999999


Q ss_pred             HHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHH
Q 042204          377 TISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYL  435 (559)
Q Consensus       377 ~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  435 (559)
                      .|-++...++...+.+-+.=-++.|+..|+..+.+++.+|+..+..+...+++..++.+
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            99999887777666665554599999999999999999999999999988776665543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.15  Score=56.82  Aligned_cols=239  Identities=13%  Similarity=0.098  Sum_probs=144.6

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh--CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hhhhhhhccC
Q 042204          151 LMREDYPQLQYEAAWALTNIASKTSEDTKVVID--HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEE  227 (559)
Q Consensus       151 L~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g  227 (559)
                      ..+.+++.+|..+.++|..++.. +.......+  ..+...|.+-+++.....+...+.+|..|....+ +..+.+..  
T Consensus       662 ~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--  738 (1176)
T KOG1248|consen  662 FENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--  738 (1176)
T ss_pred             hhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--
Confidence            33343389999999999999985 332222211  1233455555566666777778888888764444 22222221  


Q ss_pred             CHHHHHHHhchhhhHhHHHHHHHHHHHhhc--CC----CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 042204          228 ALIPLLAQLNEHAKLSMLRTATWTLSNFCR--GM----PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN  301 (559)
Q Consensus       228 ~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~--~~----~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  301 (559)
                      .++.++-.+ ++.+...++++..+|..++.  ..    ..+....+...++.+...+-.+...+....+-++..+.....
T Consensus       739 ~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~  817 (1176)
T KOG1248|consen  739 LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK  817 (1176)
T ss_pred             HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence            122222223 56677888888888888882  11    222244556666666555444444444433555655553222


Q ss_pred             hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204          302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI  381 (559)
Q Consensus       302 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl  381 (559)
                      +....-.-.+++..+.-.|.+.++.++..|+..+..++..-++..-......+++.+..+++.. .-.+|..+-..+-.+
T Consensus       818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLLEKL  896 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence            2222222235667777788999999999999999999987775432222234778888888776 777888888888777


Q ss_pred             hc-CCHHHHHHHHH
Q 042204          382 TA-GNREQIQAVID  394 (559)
Q Consensus       382 ~~-~~~~~~~~li~  394 (559)
                      +. ...+.++.+..
T Consensus       897 irkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  897 IRKFGAEELESFLP  910 (1176)
T ss_pred             HHHhCHHHHHhhCH
Confidence            76 34555555554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.77  E-value=0.061  Score=48.24  Aligned_cols=92  Identities=16%  Similarity=0.199  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCH-HHHHHH
Q 042204          157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL-IPLLAQ  235 (559)
Q Consensus       157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l-~~Ll~l  235 (559)
                      |.+|..++.+++-++...+...+     ..++.+...|.++++.+|.+|+.+|..+...+     .+.-.|.+ ..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHH
Confidence            78999999999999885543332     45789999999999999999999999997442     22222333 667777


Q ss_pred             hchhhhHhHHHHHHHHHHHhhcCC
Q 042204          236 LNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       236 l~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      + .+++++++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            7 7889999999999999998863

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.77  E-value=0.65  Score=48.74  Aligned_cols=291  Identities=15%  Similarity=0.137  Sum_probs=154.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .....++...+. +...+..|+..+.+....- +...+.     .+..++.++.+++ ..||..|++.|-.+|.++++..
T Consensus        23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~F-P~l~~~-----Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v   94 (556)
T PF05918_consen   23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHF-PDLQEE-----AINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHV   94 (556)
T ss_dssp             HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC--GGGHHH-----HHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-H
T ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHH
Confidence            456777877775 5778888999999987652 333443     5788999999998 8999999999999999888877


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc--hhhhHhHHHHHHHHHHHhh
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN--EHAKLSMLRTATWTLSNFC  256 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~--~~~~~~~~~~a~~~L~nL~  256 (559)
                      ..++     ..|+++|.++++.-...+-++|..+...+|.        +.+..+...+.  ...+..+++.++..|..=.
T Consensus        95 ~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl  161 (556)
T PF05918_consen   95 SKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKL  161 (556)
T ss_dssp             HHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred             hHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence            7665     6899999998888888888888887654443        24566666663  2456678888887775433


Q ss_pred             cCC-C---CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc----CChhHHHHHHHhCcHHHHHHhh--CC----
Q 042204          257 RGM-P---RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN----GKNDKIQAVIEAGVCPRLVELL--GH----  322 (559)
Q Consensus       257 ~~~-~---~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~l~~L~~lL--~~----  322 (559)
                      ..- +   .+..+....++..+.++|.+-..+-.......|..+-.    ......+.+     ++.+.+..  ..    
T Consensus       162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~  236 (556)
T PF05918_consen  162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDP  236 (556)
T ss_dssp             GGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---S
T ss_pred             hhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCC
Confidence            322 1   11233445566666677754333333344455555553    123333333     33333332  11    


Q ss_pred             CCCcchhhHHHHHH----HhhcCCh--HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH-HHHHHHHc
Q 042204          323 RSSSVLSPALQTIG----HIVAGDD--FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-QIQAVIDA  395 (559)
Q Consensus       323 ~~~~v~~~al~~L~----nl~~~~~--~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li~~  395 (559)
                      .++......+.|+.    -++.+..  .....+.+ .++|.+-.+     ....|.+.+.++..++..... ....    
T Consensus       237 sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~~~~d~~~----  306 (556)
T PF05918_consen  237 SDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL-----PEDRKLDLLKLLAELSPFCGAQDARQ----  306 (556)
T ss_dssp             SSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT----------HHHHHHHHHHHHHTT----THHH----
T ss_pred             cCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC-----ChHHHHHHHHHHHHHcCCCCcccHHH----
Confidence            22222222333222    2222211  12222222 455554444     345677778888888763221 1222    


Q ss_pred             CCHHHHHHHhh------cCCh----hHHHHHHHHHHHHhcC
Q 042204          396 GLIGPLINLLQ------NAEI----NIKNWAAWAISNATSG  426 (559)
Q Consensus       396 ~~i~~Li~lL~------~~~~----~v~~~a~~aL~nl~~~  426 (559)
                       .++.++++|.      ...+    ...+..+.++.+++..
T Consensus       307 -~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k  346 (556)
T PF05918_consen  307 -LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK  346 (556)
T ss_dssp             -HHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence             2344444442      1122    3456667777777765

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.75  E-value=0.14  Score=53.47  Aligned_cols=293  Identities=13%  Similarity=0.088  Sum_probs=142.4

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc
Q 042204          147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE  226 (559)
Q Consensus       147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~  226 (559)
                      ++...+ ++ +..+..|+..+.......|+....     ++..++.+..+.+..||.+|+..|..+|.+.++.-..+   
T Consensus        28 il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---   97 (556)
T PF05918_consen   28 ILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---   97 (556)
T ss_dssp             HHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred             HHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence            344444 34 688888998888888888877664     56788999999999999999999999999887654443   


Q ss_pred             CCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc---cCCHhHHHHHHHHHHHhc-cCChh
Q 042204          227 EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH---SNDKEVLTDACWALYFLS-NGKND  302 (559)
Q Consensus       227 g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~-~~~~~  302 (559)
                        ...|+.+| +..+..-...+-++|..|...+|       .+.+..+..-+.   +.|+.+++.++..|..-. .-..+
T Consensus        98 --aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   98 --ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             --HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             --HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence              56778887 55555555666667776665442       233444444333   567888999887774322 21111


Q ss_pred             HHH--HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc----CChHHHHHHHhCCChHHHHHHh------cCCCchhH
Q 042204          303 KIQ--AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA----GDDFQTQCIINCGALPYLLVLL------IHSHKKSI  370 (559)
Q Consensus       303 ~~~--~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~~~~~~~~~g~l~~L~~lL------~~~~~~~v  370 (559)
                      ...  .=.+.-++..+-..|.+-...--...+.+|..+-.    .+....+.++     +.+....      ... +++.
T Consensus       168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld~~f~~s-D~e~  241 (556)
T PF05918_consen  168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLDQPFDPS-DPES  241 (556)
T ss_dssp             TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTTS---SS-SHHH
T ss_pred             HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccCCCCCCc-CHHH
Confidence            111  11112244555566654332222334444444443    1222223222     2333222      112 2332


Q ss_pred             HHHHHHHHHH----hhc--CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHH
Q 042204          371 KNHACWTISK----ITA--GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPL  444 (559)
Q Consensus       371 ~~~a~~~L~n----l~~--~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L  444 (559)
                      -.....++..    +..  .+...+..+.+. ++|.+-++    +.+.+...+.++.-++..........++. -+...|
T Consensus       242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~L  315 (556)
T PF05918_consen  242 IDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQLL  315 (556)
T ss_dssp             HHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHHH
Confidence            2222222221    112  244555555554 77766555    45677788888888887654333333221 123333


Q ss_pred             HhcC--CCCChH----HHHHHHHHHHHHHHhhh
Q 042204          445 CDLL--PCANPT----IVTVCLKGLENILKVGE  471 (559)
Q Consensus       445 ~~lL--~~~d~~----v~~~~l~~l~~il~~~~  471 (559)
                      ..++  ....++    .++..+.++..+....+
T Consensus       316 ~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p  348 (556)
T PF05918_consen  316 KKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP  348 (556)
T ss_dssp             HTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred             HHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence            3333  122333    45556666666655433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.74  E-value=0.027  Score=59.88  Aligned_cols=213  Identities=15%  Similarity=0.114  Sum_probs=134.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204          101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV  180 (559)
Q Consensus       101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  180 (559)
                      ...+.++..-..+..++.+..+|...++.......      .+++.+...+.....-.-.++++.+++|+++.+...+..
T Consensus       506 ~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~~------~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~  579 (748)
T KOG4151|consen  506 YEALLRLGQQQFEEAKLKWYHALAGKIDFPGERSY------EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQK  579 (748)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCchh------hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHH
Confidence            33444444444455555555555522222211111      245555555544332345689999999999998888988


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204          181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~  260 (559)
                      ++..-.++.+-.++...++..+..++..+.|+.-..--+...+.+...=.++........+......++.++..+.....
T Consensus       580 i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~  659 (748)
T KOG4151|consen  580 ILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVE  659 (748)
T ss_pred             HHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcch
Confidence            99888888888888889999999999999999866444444444433223344443344455555555555554443331


Q ss_pred             C--CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh
Q 042204          261 R--PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL  319 (559)
Q Consensus       261 ~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l  319 (559)
                      .  ............+..++.+.+++++...+..+.++.....+....+.....++.+...
T Consensus       660 n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  660 NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence            1  1133445566778888899999999999999999776666666666666666555444

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=0.16  Score=56.41  Aligned_cols=145  Identities=16%  Similarity=0.141  Sum_probs=113.4

Q ss_pred             HhchHHHHHHhhc----cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcC
Q 042204          267 VRPALPVLAQLVH----SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAG  341 (559)
Q Consensus       267 ~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~  341 (559)
                      ...+.|.+++..+    ..||+++..|.-+|+.+..-+.+...     .-+|.|+..|. ++++.+|..+.-++|.++-.
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            3556777777774    46799999999999998865554322     24688888887 78999999999999998875


Q ss_pred             ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHH
Q 042204          342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS  421 (559)
Q Consensus       342 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~  421 (559)
                      -+...+     -.-+.|...|... ++.+|+.|..+++++...+     .+--.|.+..+..++.+++.+++..|-..+.
T Consensus       992 fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen  992 FPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred             cccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            554333     3446788888888 9999999999999997641     2234688999999999999999999988777


Q ss_pred             HHhcCC
Q 042204          422 NATSGG  427 (559)
Q Consensus       422 nl~~~~  427 (559)
                      .++..+
T Consensus      1061 Els~k~ 1066 (1251)
T KOG0414|consen 1061 ELSSKG 1066 (1251)
T ss_pred             Hhhhcc
Confidence            777765

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.68  E-value=0.0048  Score=50.21  Aligned_cols=70  Identities=19%  Similarity=0.325  Sum_probs=58.4

Q ss_pred             ChHHHHhcC-CCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 042204          440 CIKPLCDLL-PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL  518 (559)
Q Consensus       440 ~l~~L~~lL-~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il  518 (559)
                      ++..|+.+| .+.|+.++.+|+.-|..+++..+.             -+..+++.|+-+.|.+|+.|+|++|+..|...+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-------------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-------------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-------------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-------------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            578888988 456888999999999999977544             367789999999999999999999999999998


Q ss_pred             Hhhc
Q 042204          519 ETYW  522 (559)
Q Consensus       519 ~~~f  522 (559)
                      +++.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.66  E-value=0.13  Score=51.95  Aligned_cols=216  Identities=13%  Similarity=0.152  Sum_probs=131.6

Q ss_pred             HHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHH---HHhC---CCchhhhhhhccCCHHHHHHH
Q 042204          162 EAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALG---NVAG---DSPRCRDLVLSEEALIPLLAQ  235 (559)
Q Consensus       162 ~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~---nl~~---~~~~~r~~i~~~g~l~~Ll~l  235 (559)
                      .|+++|-.+....+.....+.+.+++..+++.+..+-.       .++.   +...   ..++.+.....       ...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~   68 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVD-------FALEENKNEEAGSGIPPEYKESSVD-------GYS   68 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHH-------HHHhcccccCCCCCCCCCccccccc-------ccc
Confidence            46777778887777778888999999999998853322       2222   1110   00111111111       000


Q ss_pred             hchhhhHhHHHHHHHHHHHhhc-CC-C-CCcHhh-H-hchHHHHHHhhccC---CHhHHHHHHHHHHHhccCChhHHHHH
Q 042204          236 LNEHAKLSMLRTATWTLSNFCR-GM-P-RPIFEQ-V-RPALPVLAQLVHSN---DKEVLTDACWALYFLSNGKNDKIQAV  307 (559)
Q Consensus       236 l~~~~~~~~~~~a~~~L~nL~~-~~-~-~~~~~~-~-~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~~~~~~~~~  307 (559)
                      + ......+.+..+.++..+.. .. . ...... . ..++..|...+.+.   -+.+...|+..+..+..+++.....+
T Consensus        69 i-~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l  147 (379)
T PF06025_consen   69 I-SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSIL  147 (379)
T ss_pred             c-CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHH
Confidence            1 12233455666666666666 22 1 111112 2 34555666667654   47889999999999999999888899


Q ss_pred             HHhCcHHHHHHhhC-C---CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh--HHH-HHHHHHH-
Q 042204          308 IEAGVCPRLVELLG-H---RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKS--IKN-HACWTIS-  379 (559)
Q Consensus       308 ~~~g~l~~L~~lL~-~---~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~--v~~-~a~~~L~-  379 (559)
                      .++|+.+.+++.+. .   ++.++....-.+++.||-+ ....+.+.+.+.++.+.+++.++ +.-  .+. +.+..++ 
T Consensus       148 ~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~lG~  225 (379)
T PF06025_consen  148 QEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNLGN  225 (379)
T ss_pred             HHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHHHH
Confidence            99999999999887 3   2344555555667777764 44667788899999999999876 321  121 3333333 


Q ss_pred             ---HhhcCCHHHHHHHHH
Q 042204          380 ---KITAGNREQIQAVID  394 (559)
Q Consensus       380 ---nl~~~~~~~~~~li~  394 (559)
                         .+.++.|.....+++
T Consensus       226 ~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  226 SFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHHHccCHHHHHHHHH
Confidence               344455555544444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.68  Score=49.18  Aligned_cols=281  Identities=16%  Similarity=0.115  Sum_probs=162.7

Q ss_pred             cCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 042204          141 SGVVPRFVEFLMRE-------DYPQLQYEAAWALTNIAS--KTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGN  211 (559)
Q Consensus       141 ~g~v~~Lv~lL~~~-------~~~~~~~~a~~~L~nl~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  211 (559)
                      .|+++.++..|...       +++.-.+.|++.+.++.+  ..+.....+.+.=+++.++..++++.--++..|+..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            47889999988421       335667788888888876  344445556666678888888899999999999999999


Q ss_pred             HhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC--CCcHhhHhchHHHHHHhhccCCHhHHHHH
Q 042204          212 VAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP--RPIFEQVRPALPVLAQLVHSNDKEVLTDA  289 (559)
Q Consensus       212 l~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a  289 (559)
                      +..+   ..+..+...+.+...+.+ ++++..++-.|+.++.-+..+..  ..-...+.+.++.|+.+-+.-+.++...+
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            9544   334444444566666777 44677888888888888887651  11112234555555555555555655555


Q ss_pred             HHHHH-HhccCChhHHHHHHHh---CcHHHHHHhhCCCC------CcchhhHHHHHHHhhc---CCh--HHHHHHHhCCC
Q 042204          290 CWALY-FLSNGKNDKIQAVIEA---GVCPRLVELLGHRS------SSVLSPALQTIGHIVA---GDD--FQTQCIINCGA  354 (559)
Q Consensus       290 ~~~L~-~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~------~~v~~~al~~L~nl~~---~~~--~~~~~~~~~g~  354 (559)
                      ...+. +.++.-......+...   ..+..-..++..++      ..-+..|..+|..+.+   .-+  ...-.-+....
T Consensus       563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl  642 (970)
T COG5656         563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL  642 (970)
T ss_pred             HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            54432 2222111111111111   12223333333331      1123334444443332   111  11111233356


Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCC
Q 042204          355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI-NIKNWAAWAISNATSGGS  428 (559)
Q Consensus       355 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~-~v~~~a~~aL~nl~~~~~  428 (559)
                      .|.+-=+|++. ..+.-.+|+..+-+.+-...+ +.. +--|+.+.+.+++.+... .-..++.-++.|+...|.
T Consensus       643 ypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         643 YPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEP-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             HHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhh-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence            66666677777 778888898888777543222 111 122456666666666553 667889999999988763

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.029  Score=62.02  Aligned_cols=161  Identities=24%  Similarity=0.240  Sum_probs=124.2

Q ss_pred             CcHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCc
Q 042204          142 GVVPRFVEFLMRE---DYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSP  217 (559)
Q Consensus       142 g~v~~Lv~lL~~~---~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~  217 (559)
                      .+.|.+++..+.+   ++|++|..|.-+|+.+..-+.+...     ..+|.|+..+. ++++.+|.+++-+++-++..-|
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            3678888888543   2399999999999999886655444     35789999887 7999999999999999987666


Q ss_pred             hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204          218 RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS  297 (559)
Q Consensus       218 ~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  297 (559)
                      ..-+.     .-+.|...| .+.++.++++|+.+|++|....    +..+.|.++.+..+|.++++++..-|=..+..|+
T Consensus       994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            53222     245566666 7889999999999999998764    5667899999999999999999888877777777


Q ss_pred             cCChhHHHHHHHhCcHHHHHHhhCCC
Q 042204          298 NGKNDKIQAVIEAGVCPRLVELLGHR  323 (559)
Q Consensus       298 ~~~~~~~~~~~~~g~l~~L~~lL~~~  323 (559)
                      ...+..    +  .++|.++..|++.
T Consensus      1064 ~k~n~i----y--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTI----Y--NLLPDILSRLSNG 1083 (1251)
T ss_pred             hcccch----h--hhchHHHHhhccC
Confidence            544322    2  3577777777665

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.53  E-value=0.15  Score=46.72  Aligned_cols=146  Identities=12%  Similarity=0.133  Sum_probs=106.4

Q ss_pred             CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcC-CchhHHHHHhCCC
Q 042204          112 DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQYEAAWALTNIASK-TSEDTKVVIDHGA  186 (559)
Q Consensus       112 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~----~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~  186 (559)
                      ...-...|+..|.-++|+  ++.+..+.++-+--.|-.+|...    ..+-+|..++.+++.+... +.+....+...++
T Consensus        92 qsnRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI  169 (293)
T KOG3036|consen   92 QSNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI  169 (293)
T ss_pred             ccchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            445667788888888876  77888888887666666666532    2368999999999999873 4455677788999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc-------CCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE-------EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-------g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      ||..++.+..+++.-+.-|..++..|..++..........       ..+..++..+.+.++..+.+.++.+..+|+.+.
T Consensus       170 VPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  170 VPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999999988776532221111       123334444445567778888888888888763

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.51  E-value=0.54  Score=46.18  Aligned_cols=197  Identities=13%  Similarity=0.134  Sum_probs=125.1

Q ss_pred             HHHHHHhhccCCHhHHHHHHHHHHHhccCCh--hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC--ChHHH
Q 042204          271 LPVLAQLVHSNDKEVLTDACWALYFLSNGKN--DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG--DDFQT  346 (559)
Q Consensus       271 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~--~~~~~  346 (559)
                      +...+..+.......+..++..+..+.....  +.+..- ...++..+...++.+...-+..|+++++-++-.  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~-~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR-RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            4444555666778899999999988874332  221111 123677788888877766677788888777643  22233


Q ss_pred             HHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHH--Hhhc----------CCh
Q 042204          347 QCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLIN--LLQN----------AEI  410 (559)
Q Consensus       347 ~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~--lL~~----------~~~  410 (559)
                      ..+++ .+.|.|...+.... ...+|..++.+|+-++.   ...+.+..+++  .+..+..  ..+.          +++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            34444 56788888887652 34565666666666543   44454443332  2221211  1211          135


Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204          411 NIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       411 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~  472 (559)
                      .+...|+.+.+-+....+...+.... ...++.|..+|++.|.+|+..|-++|.-++.....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            68888888887777665554444433 34689999999999999999999999988887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.18  Score=54.26  Aligned_cols=218  Identities=10%  Similarity=0.068  Sum_probs=136.6

Q ss_pred             hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHH
Q 042204          238 EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV  317 (559)
Q Consensus       238 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~  317 (559)
                      .++.+.++..++..+..+.+...........+++......+.+.|+-|--+|+..+..||+..++        .++|.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence            44556788999999999998764455556688999999999999999999999988888865443        3567777


Q ss_pred             Hh-hCCC---CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204          318 EL-LGHR---SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI  393 (559)
Q Consensus       318 ~l-L~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li  393 (559)
                      +. .+..   ....+...-.++++++..-.+......+ -++..++...+.+ +...|-.++..++++|....-.....+
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            63 3332   1344555557777776544333322222 4556677777777 778899999999999863332222222


Q ss_pred             HcCCHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHH--HcCChHHHHhcCC-CCChHHHHHHHHHHHHH
Q 042204          394 DAGLIGPLINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLV--REKCIKPLCDLLP-CANPTIVTVCLKGLENI  466 (559)
Q Consensus       394 ~~~~i~~Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~i  466 (559)
                      . .++..++.+.. ++.+-+|+.|+..+..+..+........+.  -.+....+..+.. +++..++..+..++..+
T Consensus       887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            1 14445555554 456789999999999988865443333221  1223333444333 33343444444444443

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.72  Score=48.96  Aligned_cols=131  Identities=20%  Similarity=0.217  Sum_probs=88.2

Q ss_pred             HHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204          314 PRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI  393 (559)
Q Consensus       314 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li  393 (559)
                      +.+-+++.+.++-+|.....+++---.++.       +.+++..|+..--++.+.+||+.|.-+|+-++..++++     
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-----  589 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-----  589 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-----
Confidence            344555666666667666655543222221       22456666666434448999999999999999888884     


Q ss_pred             HcCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          394 DAGLIGPLINLLQN-AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       394 ~~~~i~~Li~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                          ++..+.+|.. -++.||--++.||+-.+.+.....        ++..|..+..++..-|++.|+-++.-|+.
T Consensus       590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence                4555666754 489999999999998877643222        34555556666777889999988887774

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.30  E-value=0.27  Score=51.81  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=81.2

Q ss_pred             hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204          265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       265 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  344 (559)
                      ..+.+.+..++....++|..|+..+|..|..+.+... .+...+-.++...+...+.+..+.||..|+.+|+.+=..+..
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d  159 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD  159 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            3567777777777788999999999999999986433 334444556788888888999999999999999988632211


Q ss_pred             HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204          345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI  378 (559)
Q Consensus       345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L  378 (559)
                      .     +..+...+..+++++++++||+.|...|
T Consensus       160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             C-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            1     1245678888998877999998875444

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.27  E-value=0.034  Score=59.87  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=113.6

Q ss_pred             HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH--hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204          267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE--AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  344 (559)
                      ...++|.++..+...+...+..-+.+|+++..+-+..  .+..  ..++|.|++.|+-++..++..+++++..+......
T Consensus       865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence            4678899999988777888888888999888766642  3332  25788899999999999999999999988876654


Q ss_pred             HHHHHHhCCChHHHHHHhcCCCc--hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHH
Q 042204          345 QTQCIINCGALPYLLVLLIHSHK--KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN  422 (559)
Q Consensus       345 ~~~~~~~~g~l~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~n  422 (559)
                      ....-++ -++|.++.+=.+..+  ..+|..|..++..++...|...-......++..|+..|.++..-+|++|+.+=.+
T Consensus       943 L~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  943 LQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             cchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            3332232 567777777666522  6789999999999987333322222233478889999998888999999887555


Q ss_pred             Hh
Q 042204          423 AT  424 (559)
Q Consensus       423 l~  424 (559)
                      ..
T Consensus      1022 W~ 1023 (1030)
T KOG1967|consen 1022 WY 1023 (1030)
T ss_pred             hh
Confidence            43

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.23  E-value=0.31  Score=45.56  Aligned_cols=185  Identities=11%  Similarity=0.134  Sum_probs=119.1

Q ss_pred             CHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHh-------hCCCCCc-----chhhHHHHHHHhhcCChHHHHH
Q 042204          282 DKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVEL-------LGHRSSS-----VLSPALQTIGHIVAGDDFQTQC  348 (559)
Q Consensus       282 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~l-------L~~~~~~-----v~~~al~~L~nl~~~~~~~~~~  348 (559)
                      +++.++.|+.-|+.--+..++..-.+... |.+..|++=       +..+.-.     -...|+..+..++.+++ ....
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpe-tr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPE-TRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TT-THHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChH-HHHH
Confidence            57778888877777665555554444444 655554432       2222211     12346666667777554 5567


Q ss_pred             HHhCCChHHHHHHhcCCC----chhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204          349 IINCGALPYLLVLLIHSH----KKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA  423 (559)
Q Consensus       349 ~~~~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl  423 (559)
                      ++++.+.-.|...|+...    -+.+|-.+..+++.+.. .+++.+..+++.+++|..++.++.++.-.+..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            888888888888886541    24577888888988886 5788889999999999999999999999999999999998


Q ss_pred             hcCC--------CHHHHHHHHHcCChHHHHh-cCCCCChHHHHHHHHHHHHHHHh
Q 042204          424 TSGG--------SHEQIKYLVREKCIKPLCD-LLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       424 ~~~~--------~~~~~~~l~~~~~l~~L~~-lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ..+.        +++....+..  ++..++. +.+.+++++.+.+..+..++.+.
T Consensus       167 L~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            8742        2333222221  3443333 34667889999999888887643

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.15  E-value=0.045  Score=49.57  Aligned_cols=112  Identities=17%  Similarity=0.181  Sum_probs=82.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC--------CCCHHHHHHHHHHHHHH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR--------EDYPQLQYEAAWALTNI  170 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~--------~~~~~~~~~a~~~L~nl  170 (559)
                      .....+++.+.+.....  ..+..|+..+......-++.+++.|++..|+++|..        .....++.+++.||..|
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            35567888888766443  455566666665434558888999999999998863        12368999999999999


Q ss_pred             hcCCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 042204          171 ASKTSEDTKVVID-HGAVPIFVKLLASPNDDIREQAVWALGNVA  213 (559)
Q Consensus       171 ~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  213 (559)
                      .. +......++. .+++..++..|.+++..++..++..|+.+|
T Consensus       144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            98 5565666665 688999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.10  E-value=0.19  Score=49.34  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             CcHHHHH-HhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHH
Q 042204          311 GVCPRLV-ELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQ  388 (559)
Q Consensus       311 g~l~~L~-~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~  388 (559)
                      +++..|+ ..+.+.++.+|..|+++||-.+--+.....     ..++.+...++.+ +..++..|+.++..+.. +..+.
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            4455444 778889999999999999999987765443     3356778888777 89999999999999976 33333


Q ss_pred             HHHHH-------HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204          389 IQAVI-------DAGLIGPLINLLQNAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       389 ~~~li-------~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~  427 (559)
                      .....       ...++..+.+.+.+.+++++..|+.+++.+...+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            33222       2457888889999999999999999999998765

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.08  E-value=1.4  Score=48.74  Aligned_cols=210  Identities=16%  Similarity=0.198  Sum_probs=124.6

Q ss_pred             HhCCCHHHHHHhhCC-----CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---hhhh----HhHHHHHH
Q 042204          182 IDHGAVPIFVKLLAS-----PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---EHAK----LSMLRTAT  249 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---~~~~----~~~~~~a~  249 (559)
                      .+.|++..++.++.+     ....+....+..|...+.. +.+|+.+++.|+++.|+..+.   ....    ..+.+..+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            346899999998876     2334555555555555544 678999999999999999885   2222    34555555


Q ss_pred             HHHHHhhcCCCCCcHh-------------hHhchHHHHHHhhcc----CCHhHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 042204          250 WTLSNFCRGMPRPIFE-------------QVRPALPVLAQLVHS----NDKEVLTDACWALYFLSNGKNDKIQAVIEAGV  312 (559)
Q Consensus       250 ~~L~nL~~~~~~~~~~-------------~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  312 (559)
                      .++-.+..........             ....-+..+++.+.+    .++.+....+++|-+|+.++.+..+.+++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            4444444322110000             012234555555543    468899999999999999999888777654  


Q ss_pred             HHHHHHhhCCC--CCcchhhHHHHHHHhhcCC------hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC
Q 042204          313 CPRLVELLGHR--SSSVLSPALQTIGHIVAGD------DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG  384 (559)
Q Consensus       313 l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~------~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  384 (559)
                      +...+++=.-+  ...--...+.++..++.+-      ....+.+++.|++...+..|... -|..        .+   .
T Consensus       271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~---~  338 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KN---T  338 (802)
T ss_pred             HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------cc---C
Confidence            23222221111  1111123356666665533      24567788889998888887654 3333        11   1


Q ss_pred             CHHHHHHHHHcCCHHHHHHHhh
Q 042204          385 NREQIQAVIDAGLIGPLINLLQ  406 (559)
Q Consensus       385 ~~~~~~~li~~~~i~~Li~lL~  406 (559)
                      +++.+...+....+|..+.+|.
T Consensus       339 ~s~eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  339 DSPEWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             CCHHHHHHhcCCcHHHHHHHHH
Confidence            3344555666667777777764

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.08  E-value=0.14  Score=44.05  Aligned_cols=124  Identities=15%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             hhhhhccCCHHHHHHHhchhhh-----HhHHHHHHHHHHHhhcCCCCCcHhh-HhchHHHHHHhhccC--CHhHHHHHHH
Q 042204          220 RDLVLSEEALIPLLAQLNEHAK-----LSMLRTATWTLSNFCRGMPRPIFEQ-VRPALPVLAQLVHSN--DKEVLTDACW  291 (559)
Q Consensus       220 r~~i~~~g~l~~Ll~ll~~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~-~~~~l~~L~~lL~~~--d~~v~~~a~~  291 (559)
                      ...+++.+++..|+.++..+..     .++...++.++..|-... ...... ....+..++..++..  |..+...++.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4556788899999999965542     477788888899888765 222332 245666677777543  7899999999


Q ss_pred             HHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204          292 ALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       292 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  344 (559)
                      .|-++..+++...+.+.+.=-++.|+.+|..+++.++..|+..+..+....++
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999988887666666666689999999999999999998888777665543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.07  E-value=0.0087  Score=48.71  Aligned_cols=73  Identities=22%  Similarity=0.288  Sum_probs=61.1

Q ss_pred             hchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204          268 RPALPVLAQLV-HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       268 ~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  340 (559)
                      ..++..|+.+| .+.|+.++.-||.=|+.++...+.....+-+.|+=..++++|.++++.|+..|+.++..+..
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            45778888888 45688899999999999998888776677778999999999999999999999999987754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.19  Score=54.01  Aligned_cols=224  Identities=12%  Similarity=0.096  Sum_probs=141.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc
Q 042204          147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE  226 (559)
Q Consensus       147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~  226 (559)
                      .+..+.++. +.++-.++..|..+.. ..+....+...+++...+..|++.++-+--.|+..+..+|...|+        
T Consensus       732 ai~sl~d~q-vpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------  801 (982)
T KOG4653|consen  732 AISSLHDDQ-VPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------  801 (982)
T ss_pred             HHHHhcCCc-ccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------
Confidence            334444555 6789999999999998 446666677789999999999999999999999988888855433        


Q ss_pred             CCHHHHHHHhchhh---hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhH
Q 042204          227 EALIPLLAQLNEHA---KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK  303 (559)
Q Consensus       227 g~l~~Ll~ll~~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~  303 (559)
                      .+++-+.....+..   .++.+-.+..++.++..............++..++..++++|...+..++..+++++......
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            24555555332211   123333444666666665433333444556666777777778888999999999998544322


Q ss_pred             HHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204          304 IQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINC---GALPYLLVLLIHSHKKSIKNHACWTIS  379 (559)
Q Consensus       304 ~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~~v~~~a~~~L~  379 (559)
                      ....+ ..++..++.+... ++.-+|..|+..+..+..+.....-.+...   .....+........+..++..|+.++-
T Consensus       882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            22211 1244555555544 556789999999998887665432222211   223333333333325667777776664


Q ss_pred             Hh
Q 042204          380 KI  381 (559)
Q Consensus       380 nl  381 (559)
                      .+
T Consensus       961 ei  962 (982)
T KOG4653|consen  961 EI  962 (982)
T ss_pred             HH
Confidence            44

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.99  E-value=0.29  Score=51.73  Aligned_cols=192  Identities=15%  Similarity=0.141  Sum_probs=135.3

Q ss_pred             hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH
Q 042204          266 QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ  345 (559)
Q Consensus       266 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  345 (559)
                      ....++|.|++++...|..++...+.-+-...+.-   .+..++..++|.+..-+.+.++.+|+.++.++..++..-.. 
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~-  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK-  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence            44678999999999999999987776665555332   24567778999999999999999999999999988864332 


Q ss_pred             HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC-HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204          346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN-REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT  424 (559)
Q Consensus       346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~  424 (559)
                        ..++...+..|..+-. +++..+|-...-+++.|+... +..++.+    ....+.+.+.++-...|..+.+++....
T Consensus       403 --~~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  403 --RNLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             --hhhcHHHHHHHHhhCc-cccCcccccceeeecccccccchhhhccc----cchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence              2333344445554444 337788888888888886542 2222222    3445555677776778888888887665


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204          425 SGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       425 ~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~  472 (559)
                      ..-+...    +...+++.++.+.-+++..++..+..++...+...++
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~  519 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK  519 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence            5322211    3345889999999999999999999998888766544

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.27  Score=50.43  Aligned_cols=154  Identities=16%  Similarity=0.206  Sum_probs=101.8

Q ss_pred             HHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChHHHHHHHh
Q 042204          273 VLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL-LGHRSSSVLSPALQTIGHIVAGDDFQTQCIIN  351 (559)
Q Consensus       273 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~  351 (559)
                      .+.+++.+.|+-++.....+++---.+..       ..|++..|+.. .++.+..|+..|.-+||-+|..+.        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            45566777777666665554432111111       12566777777 677788999999999998887554        


Q ss_pred             CCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHH
Q 042204          352 CGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQ  431 (559)
Q Consensus       352 ~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  431 (559)
                       ..+...+++|....++.||...+.+|+-.|+++..+.       .+..|-.++.+...-||..|+.+++-+....+++.
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence             3456677777665588999999999998888654432       23445555667778899999999988887666554


Q ss_pred             HHHHHHcCChHHHHhcCCCC
Q 042204          432 IKYLVREKCIKPLCDLLPCA  451 (559)
Q Consensus       432 ~~~l~~~~~l~~L~~lL~~~  451 (559)
                      ....  .++++.+.+++..+
T Consensus       657 np~v--~~I~k~f~~vI~~K  674 (926)
T COG5116         657 NPNV--KRIIKKFNRVIVDK  674 (926)
T ss_pred             ChhH--HHHHHHHHHHHhhh
Confidence            3332  23555666665443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.84  E-value=0.039  Score=54.12  Aligned_cols=113  Identities=17%  Similarity=0.179  Sum_probs=84.2

Q ss_pred             ChHHHH-HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHH
Q 042204          354 ALPYLL-VLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI  432 (559)
Q Consensus       354 ~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  432 (559)
                      ++..|+ ..+++. ++.+|+.|..+++-.+.-+.+....     .++.+...++.++..++..|+.++..+......+..
T Consensus        27 ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   27 LLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            343433 667888 8999999999999988755543332     466778888778999999999999998764333332


Q ss_pred             HHHH-------HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204          433 KYLV-------REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       433 ~~l~-------~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~  472 (559)
                      ....       ...+++.+...+.+.+++++..+.+++.+++-.+.-
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i  147 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI  147 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence            2222       245678888889999999999999999999876554

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.83  E-value=0.36  Score=48.78  Aligned_cols=145  Identities=12%  Similarity=0.199  Sum_probs=105.8

Q ss_pred             CchHHHHHh-cCcHHHHHHhhcCCCC--HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-C---CCHHHHHH
Q 042204          132 SPPIEEVIQ-SGVVPRFVEFLMREDY--PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-S---PNDDIREQ  204 (559)
Q Consensus       132 ~~~~~~ii~-~g~v~~Lv~lL~~~~~--~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~v~~~  204 (559)
                      ......+++ ..++..|...+++...  +.+-..|+.++..+....|..-..+.+.|+++.+++.+. .   ++.++...
T Consensus        95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~  174 (379)
T PF06025_consen   95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS  174 (379)
T ss_pred             ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence            344555666 5567777777877542  689999999999999989999999999999999999887 4   67788877


Q ss_pred             HHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhH------hHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHh
Q 042204          205 AVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL------SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQL  277 (559)
Q Consensus       205 a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~------~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~l  277 (559)
                      .-.+|+.||-.... .+.+.+.+.+..+++.+....-.      +........+-.|.|+.|..+...+..++..+-++
T Consensus       175 lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l  252 (379)
T PF06025_consen  175 LPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRL  252 (379)
T ss_pred             HHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            88889999877554 56777889999999988433221      34445566777888887666555554444444443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.92  Score=46.00  Aligned_cols=268  Identities=13%  Similarity=0.097  Sum_probs=140.3

Q ss_pred             CCCHHHHHHhh----CCCCHHHHHHHHHHHHHHhCCCch-hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          184 HGAVPIFVKLL----ASPNDDIREQAVWALGNVAGDSPR-CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       184 ~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      .|.+..++..+    .+++..++..|+..|+|.+...|. +|.+.  .-.+..++.-|.++.+.++.-.+..+|..+...
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            35555544443    347889999999999999977443 33322  124666777776677788888888888777654


Q ss_pred             CCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh---hCCCCCcchhhHHHH
Q 042204          259 MPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL---LGHRSSSVLSPALQT  334 (559)
Q Consensus       259 ~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l---L~~~~~~v~~~al~~  334 (559)
                      ...... ...-++.-.+..+..+.+++++..+...++.|+.......+.+....+...+..+   +.++++. ...|++.
T Consensus       331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~ACr~  409 (533)
T KOG2032|consen  331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARACRS  409 (533)
T ss_pred             hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHHHH
Confidence            322111 1112333345667778899999999998888874333222222222233333344   3444443 3456666


Q ss_pred             HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH-HHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN-HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      ....+.-+-.. +.+.  ++++..   ++.. -...+. ..-|++ .+....++....+..+     ...++++.-+.++
T Consensus       410 ~~~~c~p~l~r-ke~~--~~~q~~---ld~~-~~~~q~Fyn~~c~-~L~~i~~d~l~~~~t~-----~~~~f~sswe~vr  476 (533)
T KOG2032|consen  410 ELRTCYPNLVR-KELY--HLFQES---LDTD-MARFQAFYNQWCI-QLNHIHPDILMLLLTE-----DQHIFSSSWEQVR  476 (533)
T ss_pred             HHHhcCchhHH-HHHH--HHHhhh---hHHh-HHHHHHHHHHHHH-HHhhhCHHHHHHHHHh-----chhheecchHHHH
Confidence            66555433211 1111  112211   1110 111111 112211 1222233332222221     1222333333455


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il  467 (559)
                      ..|...-.+...+-.+..+.+.-..-+...|..+...+-+++...+..++..+.
T Consensus       477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            555544455544434444444333345667777888889999999999988765

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.76  E-value=0.68  Score=46.60  Aligned_cols=146  Identities=12%  Similarity=0.126  Sum_probs=100.6

Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHH-HHHhccCChhHHHHH
Q 042204          229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWA-LYFLSNGKNDKIQAV  307 (559)
Q Consensus       229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~-L~~l~~~~~~~~~~~  307 (559)
                      +..++..|.+..+...+..|+..|..+|+..+..-+....-++..+++.-.+.++++...|... +.-++...+...   
T Consensus       331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~---  407 (516)
T KOG2956|consen  331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC---  407 (516)
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH---
Confidence            4566777755578888999999999999998776666666777777777777777666555544 444444444331   


Q ss_pred             HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          308 IEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       308 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                           +..+..++...+...-..++..+..++..-+...-..+-..+.|.+++...+. +..||+.|+++|-.+..
T Consensus       408 -----I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  408 -----IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 34445555556666666677777777765432211122237889999999999 99999999999987754

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.76  E-value=0.4  Score=45.07  Aligned_cols=104  Identities=23%  Similarity=0.260  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHH
Q 042204          412 IKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLV  490 (559)
Q Consensus       412 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i  490 (559)
                      ....|+..|.-++.- .|.....+.+...+..|+++|. ...+.+...++++|..++-....             ....|
T Consensus       107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~-------------N~r~F  172 (257)
T PF08045_consen  107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE-------------NQRDF  172 (257)
T ss_pred             HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH-------------HHHHH
Confidence            344566667666554 3455666678889999999994 46789999999999998854432             46789


Q ss_pred             HHhccHHHHHHHhcC--CCHHHHHHHHHHHHhhcCCCCCCC
Q 042204          491 EEAEGLEKIENLQSH--ENNEIHEKSVKILETYWCGRVVGP  529 (559)
Q Consensus       491 ~~~g~l~~l~~L~~~--~~~~v~~~a~~il~~~f~~~~~~~  529 (559)
                      |+++|+..|..+..+  .+.+++-+...-+--|..++.+..
T Consensus       173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~  213 (257)
T PF08045_consen  173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSI  213 (257)
T ss_pred             HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCC
Confidence            999999999999755  567788888888876766555443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.75  E-value=0.26  Score=56.29  Aligned_cols=166  Identities=14%  Similarity=0.136  Sum_probs=112.3

Q ss_pred             HHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC
Q 042204          246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS  325 (559)
Q Consensus       246 ~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~  325 (559)
                      .++.|+...++...+  -.....+.+..++..+..+...++..|+.||+.+...++..   +....+-..+...+.+...
T Consensus       795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence            345555555554421  12223567777888888888999999999999999777632   2333444556666777888


Q ss_pred             cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh
Q 042204          326 SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL  405 (559)
Q Consensus       326 ~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL  405 (559)
                      .||+.|+..+|..+-..++....     ....+..-+.++ ...||+.+...+..+|..+|+.-. +.+  +...++.-.
T Consensus       870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv  940 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRV  940 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHh
Confidence            99999999999888877765443     345666777777 889999999999999986554211 111  222233333


Q ss_pred             hcCChhHHHHHHHHHHHHhc
Q 042204          406 QNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       406 ~~~~~~v~~~a~~aL~nl~~  425 (559)
                      .+++..+++-+...+.++-.
T Consensus       941 ~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  941 NDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             ccchhHHHHHHHHHHHHHhc
Confidence            34444588888888887754

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.74  E-value=1.2  Score=41.05  Aligned_cols=138  Identities=10%  Similarity=0.196  Sum_probs=99.8

Q ss_pred             hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC----CchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHH
Q 042204          328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS----HKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLI  402 (559)
Q Consensus       328 ~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li  402 (559)
                      ...|+..+..++++.+ ....++++.+--.|...|...    ..+-+|-.+..+|+.+.. ++.+.+..++..+++|..+
T Consensus        96 VcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3456777777777655 445677777766666666432    256788999999999987 6777888889999999999


Q ss_pred             HHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH--------cCChH-HHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          403 NLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR--------EKCIK-PLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       403 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~--------~~~l~-~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                      +.+..++...+..|..++..+..+..  ...|+.+        ..++. .+..+.+.+++++..+++.+..++.+
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~--GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDV--GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccc--cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999887532  2222211        11233 33445577889999999998888653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=0.56  Score=49.83  Aligned_cols=218  Identities=13%  Similarity=0.095  Sum_probs=112.2

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204          187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ  266 (559)
Q Consensus       187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  266 (559)
                      +..+..+|.+.++.++-.|+.+|.+++.+....+.      +...+++++.+..+..++--.+--|+.+..    .....
T Consensus       245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i  314 (948)
T KOG1058|consen  245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI  314 (948)
T ss_pred             HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence            34455556555666666666665555443222111      234455555443444444333334444431    12233


Q ss_pred             HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH
Q 042204          267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN-DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ  345 (559)
Q Consensus       267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  345 (559)
                      ..+.+--++.+|.++|-+++..++.....|+...+ +.+-.++...+...--. =...+.+.|..-+++|...+..-++.
T Consensus       315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~  393 (948)
T KOG1058|consen  315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV  393 (948)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence            45566667778889999999999998888874433 11111111111110000 00122345677777777776655544


Q ss_pred             HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-CChhHHHHHHHHHHHHh
Q 042204          346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-AEINIKNWAAWAISNAT  424 (559)
Q Consensus       346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~~a~~aL~nl~  424 (559)
                      ..     .+++.|++.+.+. ++.........+.......|.....     ++..|+.-+.. ...++-+-|+|.++..+
T Consensus       394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYC  462 (948)
T ss_pred             HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence            33     5678888888777 5544444444444443333332222     34444444322 34566677777777766


Q ss_pred             cC
Q 042204          425 SG  426 (559)
Q Consensus       425 ~~  426 (559)
                      ..
T Consensus       463 e~  464 (948)
T KOG1058|consen  463 EG  464 (948)
T ss_pred             hh
Confidence            54

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.68  E-value=0.42  Score=44.92  Aligned_cols=102  Identities=15%  Similarity=0.075  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHH
Q 042204          157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQ  235 (559)
Q Consensus       157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~l  235 (559)
                      ..+...|+++|.-++--++..+..+.+...+..|+.+|. ...+.++..++.+|..+..++|.+...+-+.+++..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            345667889999988889999999999999999999995 4678999999999999999999988889999999999999


Q ss_pred             hchh-hhHhHHHHHHHHHHHhhcC
Q 042204          236 LNEH-AKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       236 l~~~-~~~~~~~~a~~~L~nL~~~  258 (559)
                      ++.. .+.+++-.++.+|.-....
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHcc
Confidence            9643 3566666666666655443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.67  E-value=0.85  Score=45.93  Aligned_cols=184  Identities=11%  Similarity=0.128  Sum_probs=108.7

Q ss_pred             HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204          232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHS-NDKEVLTDACWALYFLSNGKNDKIQAVIE  309 (559)
Q Consensus       232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  309 (559)
                      ++.-+..+...+-+..|..-|..+........ ......++-.+++.|.+ .++.++.-|++.|..++.+.+.....-.+
T Consensus       291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE  370 (516)
T KOG2956|consen  291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE  370 (516)
T ss_pred             HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence            33333333334445555554444433332222 22345667777888876 67888999999999999776644322222


Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHH-HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHH
Q 042204          310 AGVCPRLVELLGHRSSSVLSPALQT-IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NRE  387 (559)
Q Consensus       310 ~g~l~~L~~lL~~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  387 (559)
                      . ++..+++.-.+..+.+...|... +.-+++..+.+.        +..+..++... +...-..+...+..++.. +.+
T Consensus       371 ~-ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~E  440 (516)
T KOG2956|consen  371 I-AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAE  440 (516)
T ss_pred             H-HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHH
Confidence            1 34455555555555555544444 444444444332        33344445444 554555555566666652 444


Q ss_pred             HHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          388 QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       388 ~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      ....++. .+.|.+++...+.+..||+.|+++|..+...
T Consensus       441 eL~~ll~-diaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  441 ELLNLLP-DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             HHHHhhh-hhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            4444444 4999999999999999999999999988753

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.63  E-value=0.018  Score=34.73  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=25.8

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  172 (559)
                      ++|.+++++++++ +++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            4799999999999 9999999999999986

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.62  E-value=0.015  Score=35.08  Aligned_cols=29  Identities=34%  Similarity=0.681  Sum_probs=25.7

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhC
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAG  214 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  214 (559)
                      ++|.++++++++++++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999974

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.60  E-value=1.1  Score=49.24  Aligned_cols=198  Identities=17%  Similarity=0.233  Sum_probs=117.3

Q ss_pred             HHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCC-hHHHHHHhcCCCchh
Q 042204          292 ALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGA-LPYLLVLLIHSHKKS  369 (559)
Q Consensus       292 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~-l~~L~~lL~~~~~~~  369 (559)
                      ++.+++...++....+++.+++..+...+.. ....++..++..++|++..............+ ...+..++..-...+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7888888888899999999999999999886 45678899999999999755332211111100 123333443331335


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-HHhcC
Q 042204          370 IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKP-LCDLL  448 (559)
Q Consensus       370 v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL  448 (559)
                      .-..|+..|+.+...+++..    ..+.           -..+......++........    .. .....+.+ +..++
T Consensus       574 rsY~~~siLa~ll~~~~~~~----~~~~-----------r~~~~~~l~e~i~~~~~~~~----~~-~~~~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTT----ECVF-----------RNSVNELLVEAISRWLTSEI----RV-INDRSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCc----cccc-----------hHHHHHHHHHHhhccCccce----ee-hhhhhcchhHHHHh
Confidence            55666666666655322210    0101           11122222223333322211    11 11122333 44444


Q ss_pred             -CCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHhhc
Q 042204          449 -PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH-ENNEIHEKSVKILETYW  522 (559)
Q Consensus       449 -~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~f  522 (559)
                       .+..+..+..|++++.++++....             ++..+.+.|++..++++-.+ .-.++.+.+..+++.+.
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence             345677788999999998865322             68889999999999998433 36667778888877654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.54  E-value=0.37  Score=50.60  Aligned_cols=144  Identities=21%  Similarity=0.164  Sum_probs=108.2

Q ss_pred             CcHHHHHHhhcC----CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCC
Q 042204          142 GVVPRFVEFLMR----EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDS  216 (559)
Q Consensus       142 g~v~~Lv~lL~~----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~  216 (559)
                      .+-|.+.+...+    ++ +.+|..|.-+|..+..-+.+...     .-+|.|+..+. +++|.+|.+|+..|+.++-.-
T Consensus       892 ~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf  965 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF  965 (1128)
T ss_pred             hhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence            355666666665    45 89999999999987764444433     35799999887 799999999999999886432


Q ss_pred             chhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204          217 PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL  296 (559)
Q Consensus       217 ~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  296 (559)
                      ....+.     .-..|.+.| .+.+..++++++.++.+|.-..    +..+.|-++.++.+|.++|.++..-|-..+..+
T Consensus       966 N~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         966 NTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             hhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            222121     245666777 6778899999999999987654    344578889999999999999998888888888


Q ss_pred             ccCCh
Q 042204          297 SNGKN  301 (559)
Q Consensus       297 ~~~~~  301 (559)
                      +..++
T Consensus      1036 a~KdN 1040 (1128)
T COG5098        1036 AKKDN 1040 (1128)
T ss_pred             Hhccc
Confidence            85544

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.42  E-value=0.5  Score=47.59  Aligned_cols=274  Identities=17%  Similarity=0.141  Sum_probs=139.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHH-HHHhCCCchhhh
Q 042204          144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWAL-GNVAGDSPRCRD  221 (559)
Q Consensus       144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~r~  221 (559)
                      +..++.-|.+.....+|..++--|+.-+. +++.+..+..+|.++.+++.+.. ++..+...+..++ .-++.+.+. -+
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hh
Confidence            45566666644446899999999998888 89999999999999999999955 3332444444444 344444332 33


Q ss_pred             hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHh-hHhchHHHHHHhhc---------cCCHhHHHHHHH
Q 042204          222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFE-QVRPALPVLAQLVH---------SNDKEVLTDACW  291 (559)
Q Consensus       222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~-~~~~~l~~L~~lL~---------~~d~~v~~~a~~  291 (559)
                      .+...+....++.++.-...........      ..  ...... .....+..+.+.+.         .....-+.-++.
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            3334445555566663000000000000      00  000000 00111111111110         011122333333


Q ss_pred             HHHHhc--------------cCChhHHHHHHHhCcHHHHHHhhC----CC-------CC-----cchhhHHHHHHHhhcC
Q 042204          292 ALYFLS--------------NGKNDKIQAVIEAGVCPRLVELLG----HR-------SS-----SVLSPALQTIGHIVAG  341 (559)
Q Consensus       292 ~L~~l~--------------~~~~~~~~~~~~~g~l~~L~~lL~----~~-------~~-----~v~~~al~~L~nl~~~  341 (559)
                      ++-.++              ...+...+.+.+.|++..++.++.    ..       .+     .....++++|-+.+..
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            333331              111223345666788888888875    11       11     1345578888888766


Q ss_pred             ChHHHHHHHhC--CChHHHHHH-hcCC--CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh-------h---
Q 042204          342 DDFQTQCIINC--GALPYLLVL-LIHS--HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL-------Q---  406 (559)
Q Consensus       342 ~~~~~~~~~~~--g~l~~L~~l-L~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL-------~---  406 (559)
                      +.......+..  +.++.+... +...  ....+...++..+.|++-.+++....+...++...+..+.       .   
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            65433334332  333333333 2222  0234456788999999887777666665443322222111       1   


Q ss_pred             ----cCChhHHHHHHHHHHHHhcCC
Q 042204          407 ----NAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       407 ----~~~~~v~~~a~~aL~nl~~~~  427 (559)
                          ....++..-++.++.|++...
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeC
Confidence                113456677777777877653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.36  E-value=2.6  Score=46.65  Aligned_cols=239  Identities=15%  Similarity=0.177  Sum_probs=139.2

Q ss_pred             hchHHHHHHhhcc-----CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC----CCC----CcchhhHHHH
Q 042204          268 RPALPVLAQLVHS-----NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG----HRS----SSVLSPALQT  334 (559)
Q Consensus       268 ~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~----~~~----~~v~~~al~~  334 (559)
                      .+++..++.++.+     .+.+....++..|.+.+.. ....+.+++.|.++.|+..+.    ...    ..+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3456666666643     3456677778888887755 445678888999999888764    333    5566777777


Q ss_pred             HHHhhcCChHHHHHH----HhC--------CChHHHHHHhcCC---CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHH
Q 042204          335 IGHIVAGDDFQTQCI----INC--------GALPYLLVLLIHS---HKKSIKNHACWTISKITAGNREQIQAVIDAGLIG  399 (559)
Q Consensus       335 L~nl~~~~~~~~~~~----~~~--------g~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~  399 (559)
                      +..+...........    ...        .-+..|++.+.++   .++.+....+.+|-+++.|+++..+.+++.  +.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence            777665333211100    111        1255666666544   157888999999999999999999998874  23


Q ss_pred             HHHHHhhcC--ChhHHHHHHHHHHHHhcCC-----CHHHHHHHHHcCChHHHHhcCCCC--------ChH--------HH
Q 042204          400 PLINLLQNA--EINIKNWAAWAISNATSGG-----SHEQIKYLVREKCIKPLCDLLPCA--------NPT--------IV  456 (559)
Q Consensus       400 ~Li~lL~~~--~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~--------d~~--------v~  456 (559)
                      ..+++=.-+  ...--...+..++.++.+-     .......+++.|++...+++|...        +++        -.
T Consensus       273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            333322111  0000022355555555432     134566778899998888877321        121        23


Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHhhcC
Q 042204          457 TVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH-ENNEIHEKSVKILETYWC  523 (559)
Q Consensus       457 ~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~f~  523 (559)
                      ..+|..|.-+....              .-.+.+...+++..+..|-+. ....|=..|-++|+.+-.
T Consensus       353 p~iL~lL~GLa~gh--------------~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  353 PYILRLLRGLARGH--------------EPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHhcC--------------HHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            44555555444321              123334456677777777433 355666677777765544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.32  E-value=0.2  Score=43.77  Aligned_cols=135  Identities=15%  Similarity=0.177  Sum_probs=96.7

Q ss_pred             CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH-HcCCHHH
Q 042204          322 HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI-DAGLIGP  400 (559)
Q Consensus       322 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li-~~~~i~~  400 (559)
                      ...+.+|..++-++..+-   +...+ -....+-+.+...+... ..+-...++.+++.+..+.++....++ ..|+++.
T Consensus        16 ~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~   90 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES   90 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence            356778888888888874   22222 22223445666666666 666788889999999888888888777 6788999


Q ss_pred             HHHHhh--cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChH-HHHHHHHHHH
Q 042204          401 LINLLQ--NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPT-IVTVCLKGLE  464 (559)
Q Consensus       401 Li~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~-v~~~~l~~l~  464 (559)
                      +..++.  ..+..++..++.+|..-+..   +.++..+...+++.|.++++ +++.. ++..++-+|.
T Consensus        91 l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   91 LLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            999998  77889999999999988774   44555566678999999995 45555 6666666554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.24  E-value=8.1  Score=44.93  Aligned_cols=144  Identities=10%  Similarity=0.060  Sum_probs=98.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+..++..|..+...++-.|+++|..+...+..-.....++.++..+    +.++. ..+|+.|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            45677778888888999999999999887642222333344444333    33444 79999999999987765665544


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc--hhhhHhHHHHHHHHHHHhhc
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN--EHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~--~~~~~~~~~~a~~~L~nL~~  257 (559)
                      ...     ..+..-+.++...||..++..+..+|...|.+-..      .....++|.  .+....+..-++.++.++..
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            433     34555556678899999999999999888775322      233444443  33444588889999999987


Q ss_pred             CC
Q 042204          258 GM  259 (559)
Q Consensus       258 ~~  259 (559)
                      .+
T Consensus       961 ~p  962 (1692)
T KOG1020|consen  961 TP  962 (1692)
T ss_pred             cC
Confidence            76

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.15  E-value=2.5  Score=42.02  Aligned_cols=157  Identities=17%  Similarity=0.151  Sum_probs=111.6

Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhc-CChHHHHHHHhC-C-ChHHHHHHhcCCC----c--------hhHHHHHHHH
Q 042204          313 CPRLVELLGHRSSSVLSPALQTIGHIVA-GDDFQTQCIINC-G-ALPYLLVLLIHSH----K--------KSIKNHACWT  377 (559)
Q Consensus       313 l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~-g-~l~~L~~lL~~~~----~--------~~v~~~a~~~  377 (559)
                      ++.+...|......+..++++.|..++. ........+... . -.+.+..++....    .        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6888888998888888999999999999 555566666543 1 2334555553220    1        2788887765


Q ss_pred             HHHh-hcCCHHHHHHHHH-cCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC---HHHHHHHHHcCChHHHHhcCCCCC
Q 042204          378 ISKI-TAGNREQIQAVID-AGLIGPLINLLQNAEINIKNWAAWAISNATSGGS---HEQIKYLVREKCIKPLCDLLPCAN  452 (559)
Q Consensus       378 L~nl-~~~~~~~~~~li~-~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~l~~L~~lL~~~d  452 (559)
                      +..+ ..+++.....+++ .+.+..+.+-|..+++++...++.++..-.....   +.....+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            5444 4477777777774 5678888888888889999999999985443321   334444556677889999888777


Q ss_pred             h----HHHHHHHHHHHHHHHh
Q 042204          453 P----TIVTVCLKGLENILKV  469 (559)
Q Consensus       453 ~----~v~~~~l~~l~~il~~  469 (559)
                      +    .+...+-+.|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    8888888888887743

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.07  E-value=0.27  Score=43.10  Aligned_cols=146  Identities=11%  Similarity=0.088  Sum_probs=88.3

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL  222 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  222 (559)
                      +++.|.++|+.+..+.+|.+++++|+.|..-+|...+.+....  +.-.  -...+.......... .++   .+. -+.
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~-~~~---~~~-~ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPM-MGI---SPS-SEE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhh-ccC---CCc-hHH
Confidence            6788899998876699999999999999886665554322211  1000  011111122211111 111   111 122


Q ss_pred             hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204          223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS  297 (559)
Q Consensus       223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  297 (559)
                      ..-..++..|++.|++..-..-...++.++.++..............++|.++..++..++..++...+-|+.|.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            222335778888885444444455677777777755444556777889999999998777788887777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.94  E-value=0.59  Score=49.44  Aligned_cols=226  Identities=12%  Similarity=0.136  Sum_probs=146.0

Q ss_pred             HhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204          267 VRPALPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       267 ~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  344 (559)
                      ...++|.|+..+...+  ..++...+..-..+. ..+      ...+++|.|++++...+..+|..-+.-+-+...   .
T Consensus       291 ~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld-~~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~  360 (690)
T KOG1243|consen  291 ASKVLPILLAALEFGDAASDFLTPLFKLGKDLD-EEE------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---H  360 (690)
T ss_pred             HHHHHHHHHHHhhccccchhhhhHHHHhhhhcc-ccc------cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---h
Confidence            3556677666665444  334444333333332 222      445789999999999999998777776666654   3


Q ss_pred             HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204          345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA  423 (559)
Q Consensus       345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl  423 (559)
                      ..+.+++..++|.+...+.+. ++.+|..++.++.-++.- +..    .+...++..|-++-.+.+..+|.....+++.+
T Consensus       361 Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~----~Ln~Ellr~~ar~q~d~~~~irtntticlgki  435 (690)
T KOG1243|consen  361 LTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR----NLNGELLRYLARLQPDEHGGIRTNTTICLGKI  435 (690)
T ss_pred             cCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh----hhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence            445677889999999999999 999999999999888752 222    12222444454444456778888888888888


Q ss_pred             hcCCCHHHHHHHHHcCC-hHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHH
Q 042204          424 TSGGSHEQIKYLVREKC-IKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENL  502 (559)
Q Consensus       424 ~~~~~~~~~~~l~~~~~-l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L  502 (559)
                      ...-.+..     ..++ ..++..-++++-..-+...+.++..--+.-+           .+..+..     .++.+.-+
T Consensus       436 ~~~l~~~~-----R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-----------~~~va~k-----Ilp~l~pl  494 (690)
T KOG1243|consen  436 APHLAASV-----RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD-----------QSEVANK-----ILPSLVPL  494 (690)
T ss_pred             ccccchhh-----hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-----------hhhhhhh-----cccccccc
Confidence            77533322     3333 3455555555555556666666654332211           1223333     35777788


Q ss_pred             hcCCCHHHHHHHHHHHHhhcCCCCCC
Q 042204          503 QSHENNEIHEKSVKILETYWCGRVVG  528 (559)
Q Consensus       503 ~~~~~~~v~~~a~~il~~~f~~~~~~  528 (559)
                      .-+++..++..|...++.|....+..
T Consensus       495 ~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  495 TVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             ccCcccchhhHHHHHHHHHHhhhhhh
Confidence            88899999999999999988754433

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.91  E-value=0.76  Score=50.68  Aligned_cols=197  Identities=12%  Similarity=0.066  Sum_probs=133.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh
Q 042204          187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ  266 (559)
Q Consensus       187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  266 (559)
                      .+.+..-+.+++..-|..|+..+.-+..... ........+.+..++.....+.+..+...++.+|..++..-.......
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            3445555566777777788888887765433 111112234455566666677888899999999999998775555566


Q ss_pred             HhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH-H
Q 042204          267 VRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF-Q  345 (559)
Q Consensus       267 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~  345 (559)
                      ...++|.+++-+......++..+..++-.++....       -..+.+.+...+++.++.++..+...+.......+. .
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence            67888999999888888777766666655543211       113568889999999999999988888777665441 1


Q ss_pred             HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHH
Q 042204          346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAV  392 (559)
Q Consensus       346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l  392 (559)
                      ...-.-.++++.++....+. +.+||..|..+++-+.. .....+..+
T Consensus       407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~  453 (815)
T KOG1820|consen  407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL  453 (815)
T ss_pred             cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            11111226788888888888 99999999988887765 334434333

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.89  E-value=0.8  Score=42.90  Aligned_cols=134  Identities=12%  Similarity=0.072  Sum_probs=90.5

Q ss_pred             CCHHHHHHHHHcCCHHHHHHHhhcC-----ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHH
Q 042204          384 GNREQIQAVIDAGLIGPLINLLQNA-----EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV  458 (559)
Q Consensus       384 ~~~~~~~~li~~~~i~~Li~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~  458 (559)
                      ..++....++++++.-.|..+|...     -..+|-.++..++.++..++++.+.++.+.++++.....++..+.-....
T Consensus        79 shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtv  158 (262)
T PF04078_consen   79 SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTV  158 (262)
T ss_dssp             H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHH
T ss_pred             cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHH
Confidence            4578888899999877777777644     24688999999999999999999999999999999999999888877888


Q ss_pred             HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       459 ~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      |...+.+|+..+....-...   ..+.+.....-.|  ..+..+...+++.+-+....+..+..
T Consensus       159 AtfIlqKIL~dd~GL~yiC~---t~eRf~av~~vL~--~mV~~l~~~pS~RLLKhIIrCYlRLs  217 (262)
T PF04078_consen  159 ATFILQKILLDDVGLNYICQ---TAERFFAVAMVLN--KMVEQLVKQPSPRLLKHIIRCYLRLS  217 (262)
T ss_dssp             HHHHHHHHHHSHHHHHHHTS---SHHHHHHHHHHHH--HHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcchhHHHHHhc---CHHHHHHHHHHHH--HHHHHHccCCChhHHHHHHHHHHHHc
Confidence            99999999976654332111   1122222222111  34456677888888776555554443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.86  E-value=0.25  Score=36.58  Aligned_cols=66  Identities=17%  Similarity=0.292  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q 042204          371 KNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-AEINIKNWAAWAISNATSGGSHEQIKYLVREK  439 (559)
Q Consensus       371 ~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  439 (559)
                      .|.|.|+++++++ ++..++.+.+.++++.++++... +...+|-.|.++|+-++.  +.+-.+.|.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            5789999999975 46667777778999999999875 467899999999998887  667777666655

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.77  E-value=0.77  Score=47.12  Aligned_cols=232  Identities=14%  Similarity=0.109  Sum_probs=130.4

Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204          181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~  260 (559)
                      .++...+..|+.++.++++.-|+.....|.++-+..+..|..+.. .....+.+.+.......-...++..+..+..+..
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            445567888999999999999999999999988766666666533 3445556666445555666778888888888764


Q ss_pred             CCc-HhhHhchHHHHHHhhccCCH-hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          261 RPI-FEQVRPALPVLAQLVHSNDK-EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       261 ~~~-~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                      .+. .+...-....++.|.+.+.- ........++......++.....+     +..++..=-..+..-...-+.-+..+
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI  282 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence            333 33333444556666655432 223444444444444444333222     22233322223333333445556666


Q ss_pred             hcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcC---CHHHHHHHhhcC-----C
Q 042204          339 VAGDD-FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAG---LIGPLINLLQNA-----E  409 (559)
Q Consensus       339 ~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~---~i~~Li~lL~~~-----~  409 (559)
                      ...-+ .....+. ..+...+...+.++ +..|.+.|+....|     + .+-.++...   ++|.+...|...     +
T Consensus       283 l~~~~~~~f~~i~-~~lf~~la~ci~S~-h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn  354 (409)
T PF01603_consen  283 LEVLPPEEFQKIM-VPLFKRLAKCISSP-HFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWN  354 (409)
T ss_dssp             HTT--HHHHHHHH-HHHHHHHHHHHTSS-SHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred             HHhcCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence            55333 2222222 24567788888888 88888888765532     2 223333322   577777766431     4


Q ss_pred             hhHHHHHHHHHHHHhcC
Q 042204          410 INIKNWAAWAISNATSG  426 (559)
Q Consensus       410 ~~v~~~a~~aL~nl~~~  426 (559)
                      ..++..|..++.-+...
T Consensus       355 ~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  355 QTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             TTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            67888887777776664

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.60  E-value=0.95  Score=49.96  Aligned_cols=186  Identities=16%  Similarity=0.147  Sum_probs=128.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      +.+-..+.+.++..+.+|+..+...++...  ....-...|.+-.++.....+.+..+...|+.+|..|+......-.. 
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-  332 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-  332 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-
Confidence            344556678999999999999999887642  11111234556666666555555889999999999999865444222 


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC-
Q 042204          182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP-  260 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~-  260 (559)
                      ...++.|.++..+......+++.+..++-.++...+.       ....+.++..+ .+.++..+..+...+....+... 
T Consensus       333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence            2247889999999998899998888777777653222       11345566666 66677777665544544444332 


Q ss_pred             -CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204          261 -RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN  298 (559)
Q Consensus       261 -~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  298 (559)
                       ......+..++|.++...++.+.+|+..+..+++-+..
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence             23344567889999999999999999999999887763

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.52  E-value=4.2  Score=39.01  Aligned_cols=202  Identities=12%  Similarity=0.082  Sum_probs=128.7

Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh----hhhccCCHHHHHHHhchhhh-HhHHHHHHHHHH
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD----LVLSEEALIPLLAQLNEHAK-LSMLRTATWTLS  253 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~----~i~~~g~l~~Ll~ll~~~~~-~~~~~~a~~~L~  253 (559)
                      ..+.++|.+..|++.+..-+-+-+..++....|+-...-..|.    .+...  ...+-.++....+ +++.-++...|.
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~--~e~~~~lv~~~~~~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETN--PEILDNLVKGYENTPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhC--HHHHHHHHhhhccchHHHHHHHHHHH
Confidence            4566789999999999988888888899998888643322222    11111  1222222322121 344444444444


Q ss_pred             HhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCc----HHHHHHhhCCCCCcchh
Q 042204          254 NFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGV----CPRLVELLGHRSSSVLS  329 (559)
Q Consensus       254 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~v~~  329 (559)
                      ...+...-........-+......++.+.-++..+|..+...+.......+..+.....    .+.--.++.+.+--.+.
T Consensus       151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr  230 (342)
T KOG1566|consen  151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR  230 (342)
T ss_pred             HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence            44443222222222445555666667777788999999988887554444444444432    33356677888888899


Q ss_pred             hHHHHHHHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          330 PALQTIGHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       330 ~al~~L~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      .++..+|.+.-+...   .++.+-...-+..++.+|+.+ +..+|-+|....--..+
T Consensus       231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            999999998765442   444555557789999999999 99999999988877766

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.44  E-value=6.7  Score=40.09  Aligned_cols=268  Identities=13%  Similarity=0.111  Sum_probs=141.8

Q ss_pred             ccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCC
Q 042204          225 SEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV-HSNDKEVLTDACWALYFLSNGK  300 (559)
Q Consensus       225 ~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~  300 (559)
                      +.|.+..++..+.   .+++..++..|+..|.|...+.|..........+..++.-| ...+.+|...+..+|..+....
T Consensus       252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            3444444444432   34566788999999999999977666666666666655555 4457889999998888877432


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH-----HHHHHHhCCChHHHHHHhcCCCchhHHHHHH
Q 042204          301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF-----QTQCIINCGALPYLLVLLIHSHKKSIKNHAC  375 (559)
Q Consensus       301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-----~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~  375 (559)
                      ....-.-.--.+.-.+..+..+.+++.|..|...+|.++.....     .++.+.  +....|+-.|+++ .+.+ ..||
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~--k~~~~lllhl~d~-~p~v-a~AC  407 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVK--KRLAPLLLHLQDP-NPYV-ARAC  407 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHH--hccccceeeeCCC-ChHH-HHHH
Confidence            21110111113445677778889999999999888887643221     222122  2334455556665 5544 3456


Q ss_pred             HHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH-HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChH
Q 042204          376 WTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK-NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPT  454 (559)
Q Consensus       376 ~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~-~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~  454 (559)
                      ......+..+ -..+.+.  ++++...+...   ...+ -..-|++. +. .-.++..-++.     ....-++++.-+.
T Consensus       408 r~~~~~c~p~-l~rke~~--~~~q~~ld~~~---~~~q~Fyn~~c~~-L~-~i~~d~l~~~~-----t~~~~~f~sswe~  474 (533)
T KOG2032|consen  408 RSELRTCYPN-LVRKELY--HLFQESLDTDM---ARFQAFYNQWCIQ-LN-HIHPDILMLLL-----TEDQHIFSSSWEQ  474 (533)
T ss_pred             HHHHHhcCch-hHHHHHH--HHHhhhhHHhH---HHHHHHHHHHHHH-Hh-hhCHHHHHHHH-----HhchhheecchHH
Confidence            6665554321 1111111  12222211100   0111 11112111 11 11233333322     2222334444455


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          455 IVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       455 v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      ++..+...-.+....            -...++.....+-....+..|-..+-+++...|...++..
T Consensus       475 vr~aavl~t~~~vd~------------l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l  529 (533)
T KOG2032|consen  475 VREAAVLKTTRSVDS------------LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLL  529 (533)
T ss_pred             HHHHHHHHHHHHHHH------------hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhH
Confidence            555555444443321            1223455555555567777888899999999998888754

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.40  E-value=0.26  Score=36.47  Aligned_cols=67  Identities=21%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 042204          328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAG  396 (559)
Q Consensus       328 ~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~  396 (559)
                      .+.|+|+++++++.+ .....+.+.++++.++++..+.+...+|-.|.++|+-++. +.+..+.+-+.|
T Consensus         4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            467999999998844 4455566679999999999866588999999999998864 566555555443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.33  E-value=0.57  Score=49.51  Aligned_cols=106  Identities=15%  Similarity=0.146  Sum_probs=81.7

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204          141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR  220 (559)
Q Consensus       141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  220 (559)
                      .|.+..+++...+++ ..+|+..+.+|..+.. .....+..+-.+....+..-+.+..+.||.+|+.+|+.+-++.-.  
T Consensus        84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d--  159 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD--  159 (892)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC--
Confidence            457777888888888 7999999999999988 344445555567778888878888899999999999999754322  


Q ss_pred             hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204          221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS  253 (559)
Q Consensus       221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~  253 (559)
                         -+..+...+..++..+++.++++.++..+.
T Consensus       160 ---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  160 ---EECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ---CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence               133467888899988999999998765443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=9.1  Score=41.19  Aligned_cols=299  Identities=16%  Similarity=0.084  Sum_probs=160.6

Q ss_pred             HHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--------CCHHHHHHHHHHHHHHhC--CCchhhhhhhccCCHHH
Q 042204          162 EAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--------PNDDIREQAVWALGNVAG--DSPRCRDLVLSEEALIP  231 (559)
Q Consensus       162 ~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~r~~i~~~g~l~~  231 (559)
                      .|+.++..+.+...+.+  +  .|+++.+...|..        .++.-.+.|++.++++..  ..+....-+.+.=+++.
T Consensus       389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            45666666665333222  2  4889999998832        244556788888888864  22211112222222333


Q ss_pred             HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhC
Q 042204          232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAG  311 (559)
Q Consensus       232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  311 (559)
                      ++..+ +++..-++..+|.+++.+..+-+  .......+......++++++-.|+..|.-|+..+..+.  +....+.+.
T Consensus       465 v~P~f-~s~ygfL~Srace~is~~eeDfk--d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sah  539 (970)
T COG5656         465 VIPAF-RSNYGFLKSRACEFISTIEEDFK--DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAH  539 (970)
T ss_pred             hhHhh-cCcccchHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhh
Confidence            33333 44555567789999998854433  23334556666677788888889999988988877544  233333333


Q ss_pred             c---HHHHHHhhCCCCCcchhhHHHHH-HHhhcCChHHHHHHHh---CCChHHHHHHhcCCCc-----hhHHHHHHHHHH
Q 042204          312 V---CPRLVELLGHRSSSVLSPALQTI-GHIVAGDDFQTQCIIN---CGALPYLLVLLIHSHK-----KSIKNHACWTIS  379 (559)
Q Consensus       312 ~---l~~L~~lL~~~~~~v~~~al~~L-~nl~~~~~~~~~~~~~---~g~l~~L~~lL~~~~~-----~~v~~~a~~~L~  379 (559)
                      +   ++.|+.+-+.-+..+...++..+ +..+..-......+..   ...+.....++.++++     .+=+-.|...|.
T Consensus       540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~  619 (970)
T COG5656         540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR  619 (970)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence            3   33344433333333333333322 2222111111111111   1223333344433211     122333445554


Q ss_pred             Hhhc------CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh
Q 042204          380 KITA------GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP  453 (559)
Q Consensus       380 nl~~------~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  453 (559)
                      .+..      ..+...+.+. ....|..--+|++.-.+.-.+|+..+-+.+-. ..+. .. +.-|+.+.+.+++.+.+.
T Consensus       620 T~~smiLSlen~p~vLk~le-~slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI-~p-imwgi~Ell~~~l~~~~t  695 (970)
T COG5656         620 TIESMILSLENRPLVLKYLE-VSLYPVISFILKNEISDFYQEALDILDGYTFM-SKEI-EP-IMWGIFELLLNLLIDEIT  695 (970)
T ss_pred             HHHHHHHhcccchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHh-hh-hhhHHHHHHHhcccccch
Confidence            4432      2344334333 33566665566777778888888888776653 1121 11 234677888888887775


Q ss_pred             -HHHHHHHHHHHHHHHhhhhh
Q 042204          454 -TIVTVCLKGLENILKVGEAE  473 (559)
Q Consensus       454 -~v~~~~l~~l~~il~~~~~~  473 (559)
                       .-...+..++.|++.+|.+.
T Consensus       696 ~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         696 AVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             hhhHHHHHHHHHHHHHhCccc
Confidence             56777888999999988553

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.21  E-value=0.45  Score=48.90  Aligned_cols=130  Identities=25%  Similarity=0.321  Sum_probs=95.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHHHHhCCCchhhhhhhc
Q 042204          147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL-LASPNDDIREQAVWALGNVAGDSPRCRDLVLS  225 (559)
Q Consensus       147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~  225 (559)
                      +-+++.+.+ +-+|...+..++.--.++.       ..|++..|+.. .++.+.++|+.|+.+|+-+|.+++.       
T Consensus       521 I~ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------  585 (926)
T COG5116         521 INELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------  585 (926)
T ss_pred             HHHHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence            344555556 6777777766654433332       24678888887 6778999999999999999977654       


Q ss_pred             cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204          226 EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG  299 (559)
Q Consensus       226 ~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  299 (559)
                        .+...+.+|..+.+..++...+.+|.-.|.+.-.      ..++..|-.++.+...-|+..|+-+++.+...
T Consensus       586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q  651 (926)
T COG5116         586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQ  651 (926)
T ss_pred             --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence              3566777787777888888888889888887521      23455666777888889999999999887743

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.20  E-value=8.5  Score=40.36  Aligned_cols=286  Identities=13%  Similarity=0.103  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh
Q 042204          114 NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL  193 (559)
Q Consensus       114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l  193 (559)
                      ..+..|+..++..+..-+-.++..     +....-.++.....++.|..+...|..++.+.........     ..+...
T Consensus         5 ~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~   74 (464)
T PF11864_consen    5 SERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFRD   74 (464)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHH
Confidence            456667777776655421211111     2233334555554467888888888888885443211111     112222


Q ss_pred             hC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh--------------------------hHhHHH
Q 042204          194 LA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA--------------------------KLSMLR  246 (559)
Q Consensus       194 L~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~--------------------------~~~~~~  246 (559)
                      +. ...++--..-+.+|..++.++... + ..+.+..+.+...+....                          +.....
T Consensus        75 I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   75 ISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             HhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence            22 233433445556666666555443 1 134555566665552111                          122333


Q ss_pred             HHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccC---ChhHHHHHHHhCcHHHHHHhhC
Q 042204          247 TATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNG---KNDKIQAVIEAGVCPRLVELLG  321 (559)
Q Consensus       247 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~  321 (559)
                      ..+..+.|+.+.. .......+.+++..++.+.. +.++.....++..+-.+...   +.+...     .++..|.... 
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~-  226 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV-  226 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence            3444455555544 22333444555555554432 23333334444444333321   111111     1233344432 


Q ss_pred             CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-----CchhHHHHHHHHHHHhhcCCHHHHHHHHH-c
Q 042204          322 HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS-----HKKSIKNHACWTISKITAGNREQIQAVID-A  395 (559)
Q Consensus       322 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~li~-~  395 (559)
                       ........+-+++.|++...-.+       ..+..|..+|.++     .+..+-+.|...+..+..+..++...-+. .
T Consensus       227 -~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~  298 (464)
T PF11864_consen  227 -NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS  298 (464)
T ss_pred             -cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence             23367778889999998744322       1345677777322     14456678888888887764222221121 1


Q ss_pred             --CCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204          396 --GLIGPLINLLQNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       396 --~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~  425 (559)
                        -+++.|...++.++..+-.+++..+.++..
T Consensus       299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence              278888888988888888888888888873

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.18  E-value=1.5  Score=44.23  Aligned_cols=128  Identities=20%  Similarity=0.215  Sum_probs=77.4

Q ss_pred             CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC------CCCCcchhhHHHHHHHhhcCChH-----------
Q 042204          282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG------HRSSSVLSPALQTIGHIVAGDDF-----------  344 (559)
Q Consensus       282 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~~-----------  344 (559)
                      ...-+..|+..+..++.........++    ...+..+|.      +.++.-+..|++.++.++.....           
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~  299 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL  299 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence            345678888888888854333322222    122333332      24556777899999999875532           


Q ss_pred             -HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHH
Q 042204          345 -QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI  420 (559)
Q Consensus       345 -~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL  420 (559)
                       ....+....++|-|. -=.+. .|-+|..|++.+..+-.. ++++   +.  +++|.+++.|.+++.-|...|+.+|
T Consensus       300 v~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~~~---l~--~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  300 VDVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPKEQ---LL--QIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             S-HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-HHH---HH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             ccHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCHHH---HH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence             123344445556555 11133 678999999999988653 3332   22  2789999999999999999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.17  E-value=1.7  Score=43.82  Aligned_cols=241  Identities=17%  Similarity=0.184  Sum_probs=127.2

Q ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH-HhhcCCCCCcH
Q 042204          187 VPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS-NFCRGMPRPIF  264 (559)
Q Consensus       187 i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~-nL~~~~~~~~~  264 (559)
                      +..++.-+. +.+..+|..++--|+.-+.+ +.+|..+..+|....+++.+....+......++.++. -++++.+....
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            445555444 35567888888888888765 6789999999999999999955544434444444444 44444444443


Q ss_pred             hhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC---------CCCCcchhhHHHH
Q 042204          265 EQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG---------HRSSSVLSPALQT  334 (559)
Q Consensus       265 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~---------~~~~~v~~~al~~  334 (559)
                      ......+..+..++..+ ...+.....      . .......... ...+..+.+.+.         +....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            33455666666666511 000000000      0 0000011111 112222222221         2233456778888


Q ss_pred             HHHhhcC-----C---------hHHHHHHHhCCChHHHHHHhcC----CC------c-----hhHHHHHHHHHHHhhcCC
Q 042204          335 IGHIVAG-----D---------DFQTQCIINCGALPYLLVLLIH----SH------K-----KSIKNHACWTISKITAGN  385 (559)
Q Consensus       335 L~nl~~~-----~---------~~~~~~~~~~g~l~~L~~lL~~----~~------~-----~~v~~~a~~~L~nl~~~~  385 (559)
                      +-.++..     +         +...+.+...|++..++.++..    ..      .     ...-..+..+|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            8777411     1         1123445566889999998852    10      1     112244677777877655


Q ss_pred             HHHHHHHHHc--CCHHHHHHH-h---hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204          386 REQIQAVIDA--GLIGPLINL-L---QNAEINIKNWAAWAISNATSGGSHEQIKYLVR  437 (559)
Q Consensus       386 ~~~~~~li~~--~~i~~Li~l-L---~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  437 (559)
                      .++..+++..  +.++.+... +   ...-.++...++..+.|++.+ ++..+..+..
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s  310 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFAS  310 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhh
Confidence            5555555532  233333222 2   222345567888889999876 4444444433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.12  E-value=5.8  Score=42.49  Aligned_cols=134  Identities=13%  Similarity=0.081  Sum_probs=90.5

Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204          310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI  389 (559)
Q Consensus       310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  389 (559)
                      ..++|.|..-+++.+..++..++..+..++..-+.   ..+..-++|.+..+.....+..++..++-++.-++.    .+
T Consensus       388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~l  460 (700)
T KOG2137|consen  388 EKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RL  460 (700)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HH
Confidence            35788888889999999999999999999876652   345557788888876444388889888888887761    12


Q ss_pred             HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 042204          390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN  452 (559)
Q Consensus       390 ~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d  452 (559)
                      ....--..+..+....+..++.+......+..++..... .. ..++...+++.++.+...+.
T Consensus       461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY-SG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cc-eeeehhhhhhhhhhhhhccc
Confidence            211111235555666667788888888877777765422 11 23344567777777665443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.27  Score=46.75  Aligned_cols=144  Identities=13%  Similarity=0.157  Sum_probs=97.7

Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 042204          313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV  392 (559)
Q Consensus       313 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  392 (559)
                      +...+..|.+.++.....++..|..++....+.....+. .++-.+++-+++. ...|-+.||.+++.|...-.+.+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677788889999999999999998876654433333 4556667777788 88999999999999986433433332


Q ss_pred             HHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204          393 IDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       393 i~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il  467 (559)
                      .+. .+..|..--...+.-++..|-.+|..++.+..|..        +++.|...+.+..+.++..+...+.+..
T Consensus       168 ld~-lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  168 LDD-LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HHH-HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            221 22222221123345688999999999998776654        4666777778888888777666555433

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.06  E-value=7  Score=38.89  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=118.3

Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHc-CC-HHHHHHHhhcC-----C--------hhHHHHHHH
Q 042204          355 LPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDA-GL-IGPLINLLQNA-----E--------INIKNWAAW  418 (559)
Q Consensus       355 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~-~~-i~~Li~lL~~~-----~--------~~v~~~a~~  418 (559)
                      ++.+...|.+. ...+...+...+..++. ........+... ++ .+.+-+++...     +        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77888889888 78888899999999998 666777777643 22 44555555321     1        289999999


Q ss_pred             HHHHHhcCCCHHHHHHHHH-cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHH
Q 042204          419 AISNATSGGSHEQIKYLVR-EKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLE  497 (559)
Q Consensus       419 aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~  497 (559)
                      .+..+...+++.....+++ .+.+..+..-+..++++++..++..|..-+-.+...+         ......+-....+.
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~---------r~~K~~~fn~~~L~  207 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVS---------RSTKCKLFNEWTLS  207 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCC---------hhhhhhhcCHHHHH
Confidence            9988888888888777765 5678888888888888999999999986443332221         12344444566788


Q ss_pred             HHHHHhcCCCH----HHHHHHHHHHHhhcCC
Q 042204          498 KIENLQSHENN----EIHEKSVKILETYWCG  524 (559)
Q Consensus       498 ~l~~L~~~~~~----~v~~~a~~il~~~f~~  524 (559)
                      +|..|-...++    .+.+.+...+..++..
T Consensus       208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  208 QLASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             HHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            99998888888    8999999999887753

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.94  E-value=3.1  Score=43.30  Aligned_cols=109  Identities=20%  Similarity=0.168  Sum_probs=82.1

Q ss_pred             HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204          264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD  343 (559)
Q Consensus       264 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  343 (559)
                      ...+.+.+..++..+.++|..|+..+|..|..+++.-.+ +...+-.|++..|.+.+-+.++.||..|+.+|..+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            456677888888888899999999999999999865443 4566667889999999999999999999999988754322


Q ss_pred             HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204          344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI  378 (559)
Q Consensus       344 ~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L  378 (559)
                      .--.     .+...|..+++++++.+||+.|..-+
T Consensus       165 neen-----~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            1111     23346777787766888988775443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.93  E-value=0.93  Score=39.62  Aligned_cols=136  Identities=18%  Similarity=0.162  Sum_probs=92.8

Q ss_pred             cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHH-hCCChHHH
Q 042204          280 SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCII-NCGALPYL  358 (559)
Q Consensus       280 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~g~l~~L  358 (559)
                      ...++++..+.-++..+.+..    +.-...-+-+.+-.++...+..-...++.++..+-.+.+.....++ ..|+++.+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDAA----REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            456778888888888774222    2222222344555566666666777889999999888887655555 66999999


Q ss_pred             HHHhc--CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-CChh-HHHHHHHHHHH
Q 042204          359 LVLLI--HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-AEIN-IKNWAAWAISN  422 (559)
Q Consensus       359 ~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-~~~~-v~~~a~~aL~n  422 (559)
                      ..+..  .. +..++..++.+|+.-| .+ +.++..+...+++.|-+.++. ++.. ++..|+-+|+.
T Consensus        92 ~~~~~~~~~-~~~~~~~~lell~aAc-~d-~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   92 LPLASRKSK-DRKVQKAALELLSAAC-ID-KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHH-CTS--HHHHHHHHHHHHHHT-TS-HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhcccC-CHHHHHHHHHHHHHHH-cc-HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            99998  55 8888888888887664 33 444555555589999999964 4555 78888777764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.93  E-value=5.1  Score=43.87  Aligned_cols=196  Identities=16%  Similarity=0.116  Sum_probs=107.8

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHHHHhCCCch
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS----PNDDIREQAVWALGNVAGDSPR  218 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~  218 (559)
                      .+..+.+++....  --..+|++.|..+......-...     .+..+..++.+    .++.++..|+.+++.+......
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            4555666666644  22344566666665533233333     34556666664    5678888899888888632111


Q ss_pred             ---------hhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC---CH
Q 042204          219 ---------CRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN---DK  283 (559)
Q Consensus       219 ---------~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~---d~  283 (559)
                               ..........++.+...+.   ...+..-+..++.+|.|+-.          ...++.+..++...   ..
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence                     0111222335667777764   22345667778899999854          34677788877655   67


Q ss_pred             hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 042204          284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL  361 (559)
Q Consensus       284 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l  361 (559)
                      .++..|+++|..+....++.+        .+.+..++.+.  +.++|..|+.+|..   .++..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence            899999999999876666443        35566666553  45577777766543   22222       225566677


Q ss_pred             hcCCCchhHHHH
Q 042204          362 LIHSHKKSIKNH  373 (559)
Q Consensus       362 L~~~~~~~v~~~  373 (559)
                      +....+..|...
T Consensus       601 l~~E~~~QV~sf  612 (618)
T PF01347_consen  601 LWNEPSNQVASF  612 (618)
T ss_dssp             HTT-S-HHHHHH
T ss_pred             HhhCchHHHHHH
Confidence            765535555543

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.69  E-value=4.9  Score=37.74  Aligned_cols=203  Identities=16%  Similarity=0.192  Sum_probs=115.0

Q ss_pred             HHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHh
Q 042204          187 VPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFE  265 (559)
Q Consensus       187 i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~  265 (559)
                      ++.|+. +-+..+++++...+.+|..++.+...+...     ++..+..+. ..........+...+..+....+ ..+ 
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f-   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF-   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH-
Confidence            344554 445688999999999999999776111122     234444444 33334444445556666655432 222 


Q ss_pred             hHhchHHHHHHh--------hc--cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHH
Q 042204          266 QVRPALPVLAQL--------VH--SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQT  334 (559)
Q Consensus       266 ~~~~~l~~L~~l--------L~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~  334 (559)
                         +.+..++..        ..  +...+.......++..++...++.-     ..+++.+..+| .+.++.++..++..
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence               233322222        01  1234455555667888887666522     24578888888 77888889999999


Q ss_pred             HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHHHcCCHHHHHHHhhcCChh
Q 042204          335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVIDAGLIGPLINLLQNAEIN  411 (559)
Q Consensus       335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~  411 (559)
                      |..++...-....     .....+..-|..+..+.+.+..+..+..+..+  +.+.... ....++..+.++....+.+
T Consensus       146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~~  218 (234)
T PF12530_consen  146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDVN  218 (234)
T ss_pred             HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhccccccc
Confidence            9999842211111     23444555555555677777666666555443  2332222 3344677777777666543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.58  E-value=7.6  Score=39.51  Aligned_cols=234  Identities=11%  Similarity=0.080  Sum_probs=129.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCC--CchHHHHHhcCcHHHHHHhhcCCC----CHH--HHHHHHHHHHHHhcC
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMRED----YPQ--LQYEAAWALTNIASK  173 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~--~~~~~~ii~~g~v~~Lv~lL~~~~----~~~--~~~~a~~~L~nl~~~  173 (559)
                      ......+...+.+.++.|+....++....+  ......+.++-+.+.+-++|.+.+    .|+  .+.-++.+|+..++ 
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-   92 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-   92 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence            446666677778899999999999876643  223556778888888888887532    233  34445566777776 


Q ss_pred             CchhH--HHHHhCCCHHHHHHhhCC-CCH------HHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhH
Q 042204          174 TSEDT--KVVIDHGAVPIFVKLLAS-PND------DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSM  244 (559)
Q Consensus       174 ~~~~~--~~i~~~g~i~~L~~lL~~-~~~------~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~  244 (559)
                      .++..  ..++  +.||.|+.++.. .++      .+.+.+-.+|..+++..+.. ..++..|+++.+.+... .++...
T Consensus        93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~-~~~~~~  168 (698)
T KOG2611|consen   93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYE-LPDGSH  168 (698)
T ss_pred             ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHh-CCCCch
Confidence            45543  2333  478999998865 233      37788999999999886664 45667899998886652 211111


Q ss_pred             -HHHHHHHHHHhhcCC--CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhH--HHHHH----HhCcHHH
Q 042204          245 -LRTATWTLSNFCRGM--PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK--IQAVI----EAGVCPR  315 (559)
Q Consensus       245 -~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~--~~~~~----~~g~l~~  315 (559)
                       ..-++..+.-+...-  =.......-.++..+..=+...+....-..|..|..+.......  .....    ...+-.-
T Consensus       169 d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G  248 (698)
T KOG2611|consen  169 DMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG  248 (698)
T ss_pred             hHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence             111222222111111  01111111122333333334455666777788887544222200  00000    0111222


Q ss_pred             HHHhhCCC-CCcchhhHHHHHHHhhc
Q 042204          316 LVELLGHR-SSSVLSPALQTIGHIVA  340 (559)
Q Consensus       316 L~~lL~~~-~~~v~~~al~~L~nl~~  340 (559)
                      +..+|++. .+.-|.+|+....|+..
T Consensus       249 ~~~IL~~kv~p~qr~pAL~Laa~~~h  274 (698)
T KOG2611|consen  249 VVAILQNKVAPSQRLPALILAANMMH  274 (698)
T ss_pred             HHHHHhcccCchhcChHHHHHHHHHH
Confidence            34444442 34556777777777654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.54  E-value=7  Score=40.47  Aligned_cols=166  Identities=13%  Similarity=0.062  Sum_probs=110.8

Q ss_pred             hHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC----cchhhHHHHHHHhhcCChHH
Q 042204          270 ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS----SVLSPALQTIGHIVAGDDFQ  345 (559)
Q Consensus       270 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~----~v~~~al~~L~nl~~~~~~~  345 (559)
                      ....+.+.+.+++...+..++..+..++ .+....+.++....+..|..++.+...    .+...+++++.-+....- .
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls-~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLS-LDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcc-ccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence            3445677788888777777888888888 455677889999999999999887654    234444444444332211 0


Q ss_pred             HHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204          346 TQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT  424 (559)
Q Consensus       346 ~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~  424 (559)
                      ....+...++.....+.+-. .+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+.
T Consensus       162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            01111112222333332211 14456677888888888887777777778778999999999999999999888888888


Q ss_pred             cCCCHHHHHHHHH
Q 042204          425 SGGSHEQIKYLVR  437 (559)
Q Consensus       425 ~~~~~~~~~~l~~  437 (559)
                      ..+.+..+..+.+
T Consensus       242 ~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  242 RKAPDDKRFEMAK  254 (713)
T ss_pred             hhCChHHHHHHHH
Confidence            8776665555444

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.51  E-value=2.2  Score=45.11  Aligned_cols=178  Identities=15%  Similarity=0.174  Sum_probs=120.2

Q ss_pred             HHHHHhhcc----CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChHHH
Q 042204          272 PVLAQLVHS----NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAGDDFQT  346 (559)
Q Consensus       272 ~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~  346 (559)
                      |...+...+    .|++++..|.-+|..+..-+.+..   .  .-+|.++..|. +++|.+|..|.-.+|.++-.-....
T Consensus       895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc---~--ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~  969 (1128)
T COG5098         895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC---S--EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA  969 (1128)
T ss_pred             HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH---H--HHHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence            444444443    688899888888887765444332   1  23688888887 7999999999999998875433332


Q ss_pred             HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          347 QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       347 ~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      +.     .-..|..-|.+. +..||+.+..++.++.....     +--.|-++.+..+|.++|.++...|-..+..++..
T Consensus       970 de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098         970 DE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred             HH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence            22     234677777777 89999999999999875321     22346788899999999999999999999999875


Q ss_pred             CCHHHHHHHHHcCChHHHHhcCCC---CChHHHHHHHHHHHHHHHhhhh
Q 042204          427 GSHEQIKYLVREKCIKPLCDLLPC---ANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       427 ~~~~~~~~l~~~~~l~~L~~lL~~---~d~~v~~~~l~~l~~il~~~~~  472 (559)
                      .+.      +-.|+++.+..+-.+   .+.. -..+...|..+.....+
T Consensus      1039 dNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh 1080 (1128)
T COG5098        1039 DNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKERH 1080 (1128)
T ss_pred             ccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHH
Confidence            322      234556555554422   1222 44566666666655544

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.44  E-value=20  Score=42.00  Aligned_cols=72  Identities=10%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             CChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          353 GALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       353 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      +++|.|-.-|.+. +..+|..|...++.+......+.. =-...++...+.-+.+.+.++|.+++....++...
T Consensus       259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~  330 (1266)
T KOG1525|consen  259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN  330 (1266)
T ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence            7899999999998 999999999999999864333222 00123566667777788999999999999988876

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.30  E-value=10  Score=38.40  Aligned_cols=305  Identities=16%  Similarity=0.185  Sum_probs=154.9

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCC-chHHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHhcCCchh
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERS-PPIEEVIQSGVVPRFVEFLMR----------EDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~-~~~~~ii~~g~v~~Lv~lL~~----------~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      .+.+.+.+..|...|.+.+....+ +..+.+.+  -++.++++++.          +.+..+..+|+++|+.+.. +++.
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i   79 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI   79 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence            344556666666666666554322 22333322  24445544432          1126888999999999987 5555


Q ss_pred             HHHHHhCC---CHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch----hhhHhHHHHH
Q 042204          178 TKVVIDHG---AVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE----HAKLSMLRTA  248 (559)
Q Consensus       178 ~~~i~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~----~~~~~~~~~a  248 (559)
                      ...+-+.-   ++...+..+.+  .+..+...++|+|..=-     +...++....+..++..+..    -....+....
T Consensus        80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er  154 (372)
T PF12231_consen   80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISER  154 (372)
T ss_pred             HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence            44443321   34555666644  45667777777776531     22234444555556655522    2345677778


Q ss_pred             HHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc--CCh-hHHHH---HHH----hC-----cH
Q 042204          249 TWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN--GKN-DKIQA---VIE----AG-----VC  313 (559)
Q Consensus       249 ~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~--~~~-~~~~~---~~~----~g-----~l  313 (559)
                      +.++.+|....|..-......-+|.++..+-+....++..|...+..+..  ..+ .....   ..+    .+     +.
T Consensus       155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~  234 (372)
T PF12231_consen  155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC  234 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence            88888888776544444444456676666666666676665555444431  111 11111   111    12     34


Q ss_pred             HHHHHhhCCCCCcchhhHHHHHHHhhcCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc---CCHHHH
Q 042204          314 PRLVELLGHRSSSVLSPALQTIGHIVAGDDF-QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA---GNREQI  389 (559)
Q Consensus       314 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~  389 (559)
                      ++|..++.+.+.....+-+|..--..-++.. .....+ ...+...-..++++ ++.+|.+|..+=..++.   .++...
T Consensus       235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~  312 (372)
T PF12231_consen  235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTS  312 (372)
T ss_pred             HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            4466666664554455545544333333321 111111 13344444456677 88899887544443332   222222


Q ss_pred             HHHHHcCCHHHHHHHhhcC-Ch----hHHHHHHHHHHHHh
Q 042204          390 QAVIDAGLIGPLINLLQNA-EI----NIKNWAAWAISNAT  424 (559)
Q Consensus       390 ~~li~~~~i~~Li~lL~~~-~~----~v~~~a~~aL~nl~  424 (559)
                      ...+.- +..++...+... ..    +++..++..++++.
T Consensus       313 ~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll  351 (372)
T PF12231_consen  313 PKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL  351 (372)
T ss_pred             HHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence            222222 233333334332 22    45566666666554

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=93.17  E-value=2.8  Score=43.04  Aligned_cols=233  Identities=14%  Similarity=0.107  Sum_probs=130.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .-+..|+..+.|+|+..+......+.++...  .......+...+...|.+++.....+....+.+++++.+..|..-.-
T Consensus       133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl  210 (409)
T PF01603_consen  133 KFIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL  210 (409)
T ss_dssp             HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence            4567788888999998888888888887654  34444445555777888888766556778889999999988643111


Q ss_pred             HHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          179 KVVIDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      ......=....|+.+.+.+. .....+-..++..++..+|..-..     ++..+++.= ...+..-....+.-+..+..
T Consensus       211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~  284 (409)
T PF01603_consen  211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILE  284 (409)
T ss_dssp             -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHH
Confidence            11111111234444555433 233455566666666555543222     233333332 11222222223344455554


Q ss_pred             CCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhhCCC-----CCcch
Q 042204          258 GMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELLGHR-----SSSVL  328 (559)
Q Consensus       258 ~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~-----~~~v~  328 (559)
                      ..+...+ .....+...+...+.+.+..|.+.|+....|     + ..-.++..   .++|.+..-|...     +..++
T Consensus       285 ~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr  358 (409)
T PF01603_consen  285 VLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVR  358 (409)
T ss_dssp             T--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4332222 2335667778888899999998888755422     2 22222222   2567777666441     56688


Q ss_pred             hhHHHHHHHhhcCChHH
Q 042204          329 SPALQTIGHIVAGDDFQ  345 (559)
Q Consensus       329 ~~al~~L~nl~~~~~~~  345 (559)
                      ..|..++..+...+...
T Consensus       359 ~~a~~vl~~l~~~d~~l  375 (409)
T PF01603_consen  359 NLAQNVLKILMEMDPKL  375 (409)
T ss_dssp             HHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHHhCHHH
Confidence            88888888888776643

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.78  E-value=1.2  Score=42.63  Aligned_cols=145  Identities=19%  Similarity=0.185  Sum_probs=103.7

Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHH
Q 042204          268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ  347 (559)
Q Consensus       268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  347 (559)
                      ...+...+..|.++|.+...+++..+..|+....+.....+. .++-.+++-+++....|-..|+.+++.|.+.-....+
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556667788999999999999999999766655444443 3677778888888889999999999999886554443


Q ss_pred             HHHhCCChHHHHHHh-cCC--CchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204          348 CIINCGALPYLLVLL-IHS--HKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA  423 (559)
Q Consensus       348 ~~~~~g~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl  423 (559)
                      .     -++.++..| ...  .+.-|+..|-.+|..+..+ ++.        .+++.|+..+++..+.++..++.+..++
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence            3     233444433 221  1456888888888877653 222        2577788888888999998888888777


Q ss_pred             hcC
Q 042204          424 TSG  426 (559)
Q Consensus       424 ~~~  426 (559)
                      ...
T Consensus       233 v~r  235 (334)
T KOG2933|consen  233 VIR  235 (334)
T ss_pred             cee
Confidence            654

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.69  E-value=9.1  Score=36.84  Aligned_cols=201  Identities=12%  Similarity=0.069  Sum_probs=136.3

Q ss_pred             hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC---CcHhhH---hchHHHHHHhhccC-CHhHHHHHHHHHH
Q 042204          222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR---PIFEQV---RPALPVLAQLVHSN-DKEVLTDACWALY  294 (559)
Q Consensus       222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~---~~~l~~L~~lL~~~-d~~v~~~a~~~L~  294 (559)
                      .+.+.|.+..++..+ ..-+.+.++.++...+++-+..-.   +.....   ..++..|+.-  .. .+++...+-..+.
T Consensus        74 ef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR  150 (342)
T ss_pred             HHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence            445677888888888 666778888899999998876522   222222   2333333333  22 2555555544454


Q ss_pred             HhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCC----hHHHHHHhcCCCchhH
Q 042204          295 FLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGA----LPYLLVLLIHSHKKSI  370 (559)
Q Consensus       295 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~~v  370 (559)
                      ..... +...+.+....-+......+..+.-.+...|..+...+.+........++..+.    .+.--.++.+. +.-+
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            44432 334455666677778888888888888899999999888877666555554433    44466677888 9999


Q ss_pred             HHHHHHHHHHhhcC--CHHHH-HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204          371 KNHACWTISKITAG--NREQI-QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       371 ~~~a~~~L~nl~~~--~~~~~-~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~  427 (559)
                      +..+...++.+..+  +.... +++-...-+..++.+|.++...+|-+|-....-...+.
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999998763  33333 33334456889999999999999999998888777653

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=92.58  E-value=10  Score=36.32  Aligned_cols=214  Identities=15%  Similarity=0.146  Sum_probs=122.3

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhh
Q 042204          147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVL  224 (559)
Q Consensus       147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~  224 (559)
                      |=..|.+++ +.+|..|..+|+.+...-+...   ....-+..|+.++.+  .+......++.++..+.....-      
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~------   73 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF------   73 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC------
Confidence            445677888 8999999999999887544322   222335556665543  4555555567777777633221      


Q ss_pred             ccCCHHHHHHHhch-----hhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhcc
Q 042204          225 SEEALIPLLAQLNE-----HAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSN  298 (559)
Q Consensus       225 ~~g~l~~Ll~ll~~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~  298 (559)
                      ..+....+++.+.+     ......+..+...+..+...........-...+..+++++. ..||.-+..+...+..+..
T Consensus        74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            11113333333322     22344566666677776655321112222456666677765 4588877777777776653


Q ss_pred             CChhHHHHHHHhCcHHHHHHhhCC---------C-CC-c-chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC
Q 042204          299 GKNDKIQAVIEAGVCPRLVELLGH---------R-SS-S-VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH  366 (559)
Q Consensus       299 ~~~~~~~~~~~~g~l~~L~~lL~~---------~-~~-~-v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~  366 (559)
                      .-+      + ....+.+.+.+..         + ++ . .+..--..|.+....++....     -.+|.|++-|.++ 
T Consensus       154 ~~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~-  220 (262)
T PF14500_consen  154 EFD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST-  220 (262)
T ss_pred             hcc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC-
Confidence            332      1 2233444444331         1 22 1 233344445554444443332     4688999999999 


Q ss_pred             chhHHHHHHHHHHHhhc
Q 042204          367 KKSIKNHACWTISKITA  383 (559)
Q Consensus       367 ~~~v~~~a~~~L~nl~~  383 (559)
                      .+.+|..++.+|...+.
T Consensus       221 ~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  221 SPSVKLDSLQTLKACIE  237 (262)
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            89999999999988875

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.47  E-value=3.6  Score=43.74  Aligned_cols=195  Identities=14%  Similarity=0.125  Sum_probs=120.8

Q ss_pred             HHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Cc----hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHH
Q 042204          135 IEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK-TS----EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWAL  209 (559)
Q Consensus       135 ~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L  209 (559)
                      .++++-.=.=|.+.+-|+-.+ ..+|..|+..+.+.--- ++    +..+.+++ .-...|-++|.++-+.+|..|+..+
T Consensus       167 Veeml~rL~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv  244 (1005)
T KOG1949|consen  167 VEEMLYRLYKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGV  244 (1005)
T ss_pred             HHHHHHHHHhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHH
Confidence            444443334466667777778 79999999999987542 22    22333443 2345678899999999999988888


Q ss_pred             HHHhCCCchhhhhhhcc---CCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHH
Q 042204          210 GNVAGDSPRCRDLVLSE---EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVL  286 (559)
Q Consensus       210 ~nl~~~~~~~r~~i~~~---g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~  286 (559)
                      ..+...   +-..+...   ..+..+..-+..++..+++......|..+..++  ........++|.+-..|+++...|+
T Consensus       245 ~k~~s~---fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VR  319 (1005)
T KOG1949|consen  245 CKITSK---FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVR  319 (1005)
T ss_pred             HHHHHH---HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHH
Confidence            777532   22222111   123333333444555677777777788777763  3344556778888888889999999


Q ss_pred             HHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204          287 TDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV  339 (559)
Q Consensus       287 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  339 (559)
                      ..+...|..+-....-.   +.+---.+.++..|..++..+....+..|-+.+
T Consensus       320 vA~vd~ll~ik~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  320 VAFVDMLLKIKAVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             HHHHHHHHHHHhhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            99988888775332211   221112345666666666555555555555554

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.44  E-value=3.8  Score=37.01  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      -++.+++...+.+...+..|+..+.-++...=-.|.+      .+|.++.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            5678888888999999999999999887765334433      6899999999988 99999999999999886554433


Q ss_pred             HHHhCCCHHHHHHh---hCCC-CHHH---HHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh-------hHhHH
Q 042204          180 VVIDHGAVPIFVKL---LASP-NDDI---REQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA-------KLSML  245 (559)
Q Consensus       180 ~i~~~g~i~~L~~l---L~~~-~~~v---~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~-------~~~~~  245 (559)
                      .-...|+ ..-..+   +... ....   .......+..+...+...|..+     +..+++.+....       ...-.
T Consensus        82 ~~~~~gi-~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEGI-RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHHH-HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            3332332 222221   1111 1111   3344555556666555555554     556666663321       22334


Q ss_pred             HHHHHHHHHhhcC
Q 042204          246 RTATWTLSNFCRG  258 (559)
Q Consensus       246 ~~a~~~L~nL~~~  258 (559)
                      ...+++..||+.-
T Consensus       156 ~~~~Fla~nLA~l  168 (187)
T PF12830_consen  156 DFLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHHhcC
Confidence            4455555555544

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.06  E-value=21  Score=38.88  Aligned_cols=219  Identities=11%  Similarity=0.076  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC---HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh
Q 042204          244 MLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND---KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL  320 (559)
Q Consensus       244 ~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL  320 (559)
                      ++...+.+|.|+...-.........-++|++-....-+.   .-..+++...=.....+.+.....+.  +++|.+..++
T Consensus       631 Lr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~i  708 (978)
T KOG1993|consen  631 LRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYII  708 (978)
T ss_pred             HHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHH
Confidence            444566788888876544444444445555443332222   22344443322222222222222222  4678888877


Q ss_pred             CCCCCcchhhHHHHHHHh-hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHH
Q 042204          321 GHRSSSVLSPALQTIGHI-VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIG  399 (559)
Q Consensus       321 ~~~~~~v~~~al~~L~nl-~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~  399 (559)
                      ....+..+ .++.++... .-.+..... -...|+.+.+..++..- ..+-....+.++..+...++ ........++++
T Consensus       709 E~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~  784 (978)
T KOG1993|consen  709 EQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLS  784 (978)
T ss_pred             HhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhH
Confidence            65544332 233333222 122222111 11237777888887654 44444455555555554433 555566677888


Q ss_pred             HHHHHhhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCC--------hHHHHhcCC-CCChHHHHHHHHHHHHHH
Q 042204          400 PLINLLQN--AEINIKNWAAWAISNATSGGSHEQIKYLVR-EKC--------IKPLCDLLP-CANPTIVTVCLKGLENIL  467 (559)
Q Consensus       400 ~Li~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~--------l~~L~~lL~-~~d~~v~~~~l~~l~~il  467 (559)
                      .+..-+-.  +.+.+-..-+..++.++.. +++..-.+++ ..-        +..-+.+.. -.+++-++.-.-++..++
T Consensus       785 ~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll  863 (978)
T KOG1993|consen  785 RLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLL  863 (978)
T ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHh
Confidence            88776633  3566667777777777665 3443333222 221        122222222 245555555555666666


Q ss_pred             Hh
Q 042204          468 KV  469 (559)
Q Consensus       468 ~~  469 (559)
                      ..
T Consensus       864 ~t  865 (978)
T KOG1993|consen  864 RT  865 (978)
T ss_pred             cc
Confidence            43

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.97  E-value=9.4  Score=39.57  Aligned_cols=158  Identities=15%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCC---HHHHHHHHHHHHHHhcCCch
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY---PQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~---~~~~~~a~~~L~nl~~~~~~  176 (559)
                      ....+.+.+.+++...+..|+..+..+ |.+ ...+.+++...++..|.+++.+++.   .++....+.++..+-...- 
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            456888899999999999999999885 443 5668999999999999999988762   2444444444444433211 


Q ss_pred             hHHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          177 DTKVVIDHGAVPIFVKLLA--SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      ..=..+...+|.....+.+  ..+..+-..|+..|-++...++..++.+.+.--+..++..+ +..+..+...|...+..
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            1111112223333333332  24556677888889998887777788888888899999999 66677777777777777


Q ss_pred             hhcCCCC
Q 042204          255 FCRGMPR  261 (559)
Q Consensus       255 L~~~~~~  261 (559)
                      +....|.
T Consensus       240 l~~~a~~  246 (713)
T KOG2999|consen  240 LFRKAPD  246 (713)
T ss_pred             HHhhCCh
Confidence            7776643

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.86  E-value=0.77  Score=35.89  Aligned_cols=85  Identities=18%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..+...+..|+++.+.+|-.|+..|++++... +  ....-..+++..+...|++++ +-+-..|+.+|..++...++  
T Consensus         3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~--   76 (92)
T PF10363_consen    3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD--   76 (92)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH--
Confidence            35678888999999999999999999998764 3  111112457788889999998 89999999999999985543  


Q ss_pred             HHHHhCCCHHHHHHhhC
Q 042204          179 KVVIDHGAVPIFVKLLA  195 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~  195 (559)
                            .+++.|++...
T Consensus        77 ------~vl~~L~~~y~   87 (92)
T PF10363_consen   77 ------EVLPILLDEYA   87 (92)
T ss_pred             ------HHHHHHHHHHh
Confidence                  24556665443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=91.82  E-value=18  Score=43.99  Aligned_cols=268  Identities=11%  Similarity=0.095  Sum_probs=140.2

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCch---hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHH
Q 042204          196 SPNDDIREQAVWALGNVAGDSPR---CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALP  272 (559)
Q Consensus       196 ~~~~~v~~~a~~~L~nl~~~~~~---~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~  272 (559)
                      +++..++..|+..|..++...-+   ....-....++.|+...+.+..+.++++.++.++.++..........-...++.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence            34566767777776666632111   111111234678888888777788999999999998876542111112223333


Q ss_pred             HHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH--hC----cHHHHHHhhCCC-CCcchhhHHHHHHHhhc----C
Q 042204          273 VLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE--AG----VCPRLVELLGHR-SSSVLSPALQTIGHIVA----G  341 (559)
Q Consensus       273 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g----~l~~L~~lL~~~-~~~v~~~al~~L~nl~~----~  341 (559)
                      .+.......++.+...|..++..+...   ....+..  .+    ++..|....... +..+-..|+..|.+++.    +
T Consensus      1228 VLs~aa~d~~e~iV~lAFetl~~I~~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076       1228 VFTTAAYDDHKNIVLLAFEIIEKIIRE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence            333333455677777777777766532   1111111  12    233333333332 34455556666654421    0


Q ss_pred             Ch-----------------------HHHH-----HHHhCCChHHH---HHHhcCCCchhHHHHHHHHHHHhhc--C---C
Q 042204          342 DD-----------------------FQTQ-----CIINCGALPYL---LVLLIHSHKKSIKNHACWTISKITA--G---N  385 (559)
Q Consensus       342 ~~-----------------------~~~~-----~~~~~g~l~~L---~~lL~~~~~~~v~~~a~~~L~nl~~--~---~  385 (559)
                      .-                       ....     .......++.|   ..+.... +++||..|+.+|-.+..  |   +
T Consensus      1305 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076       1305 DLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred             cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCC
Confidence            00                       0000     00001233333   3344555 89999999999988765  2   5


Q ss_pred             HHHHHHHHHcCCHHHHHHHhhcC------------------C--------hhHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q 042204          386 REQIQAVIDAGLIGPLINLLQNA------------------E--------INIKNWAAWAISNATSGGSHEQIKYLVREK  439 (559)
Q Consensus       386 ~~~~~~li~~~~i~~Li~lL~~~------------------~--------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  439 (559)
                      ++.+..++.. ++-++++.++..                  +        .+....|+..+.++... --+.... .-.+
T Consensus      1384 ~~~W~~if~~-VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~-fFd~L~~-~L~~ 1460 (1780)
T PLN03076       1384 LPLWERVFES-VLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVK-FYPTVNP-LLKK 1460 (1780)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHH
Confidence            6666766664 555666555421                  0        02223333334443331 1112222 1234


Q ss_pred             ChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          440 CIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      ++..|..++..++..+......+|.+++...
T Consensus      1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            5666666677788888888888888887543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=91.69  E-value=3  Score=37.28  Aligned_cols=144  Identities=16%  Similarity=0.196  Sum_probs=90.7

Q ss_pred             cchhhHHHHHHHhhcCChHH-H----HHHHh------CCChHHHH-HHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204          326 SVLSPALQTIGHIVAGDDFQ-T----QCIIN------CGALPYLL-VLLIHSHKKSIKNHACWTISKITAGNREQIQAVI  393 (559)
Q Consensus       326 ~v~~~al~~L~nl~~~~~~~-~----~~~~~------~g~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li  393 (559)
                      ++|..|+.+|..++...+.. .    ..++-      .+.-+.|+ -++.++ ++.+|..|+.++..+..+........-
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae   79 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAE   79 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence            36777888888887762211 0    11111      12333344 445666 999999999999999887655544433


Q ss_pred             HcC-------------------CHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh
Q 042204          394 DAG-------------------LIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP  453 (559)
Q Consensus       394 ~~~-------------------~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  453 (559)
                      +.+                   +-..|+..|+.+ +..+....+.++..++.....+..+.=.-..++..+..++.+.|+
T Consensus        80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~  159 (182)
T PF13251_consen   80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP  159 (182)
T ss_pred             hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence            211                   223344455444 667888889999999887554443221112245566667788999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 042204          454 TIVTVCLKGLENILKVG  470 (559)
Q Consensus       454 ~v~~~~l~~l~~il~~~  470 (559)
                      +++..++.++..++...
T Consensus       160 ~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  160 NVRVAALSCLGALLSVQ  176 (182)
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            99999999999888554

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.59  E-value=11  Score=40.96  Aligned_cols=136  Identities=15%  Similarity=0.115  Sum_probs=80.7

Q ss_pred             chHHHHHHhhccC----CHhHHHHHHHHHHHhccC---ChhHHHHHHHhCcHHHHHHhhC----CCCCcchhhHHHHHHH
Q 042204          269 PALPVLAQLVHSN----DKEVLTDACWALYFLSNG---KNDKIQAVIEAGVCPRLVELLG----HRSSSVLSPALQTIGH  337 (559)
Q Consensus       269 ~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~----~~~~~v~~~al~~L~n  337 (559)
                      ..+..+..++.++    .+.+...++-+++.+...   ........+-..+++.+...|.    ..+...+..++++|||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            3455566666543    455667777777766521   1111001111234555555543    3455567789999999


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhc--CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLI--HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN--AEINIK  413 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~  413 (559)
                      +.....           ++.+...+.  ...+..+|..|+|+|..++...+..        +-+.|+.++.+  .++++|
T Consensus       473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvR  533 (574)
T smart00638      473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVR  533 (574)
T ss_pred             cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHH
Confidence            876322           334444443  1125689999999999987644554        33456666654  478899


Q ss_pred             HHHHHHHHHH
Q 042204          414 NWAAWAISNA  423 (559)
Q Consensus       414 ~~a~~aL~nl  423 (559)
                      ..|..+|...
T Consensus       534 iaA~~~lm~t  543 (574)
T smart00638      534 MAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHhc
Confidence            8888887764

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.55  E-value=1.6  Score=34.16  Aligned_cols=83  Identities=17%  Similarity=0.166  Sum_probs=63.0

Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHH
Q 042204          229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVI  308 (559)
Q Consensus       229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  308 (559)
                      +...+..+ .++.+.++..++..|..|...+. ........++..+...++++|+-|--+|+.+|..|++..++.     
T Consensus         5 ~~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----   77 (92)
T PF10363_consen    5 LQEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----   77 (92)
T ss_pred             HHHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----
Confidence            34455556 56778899999999999998865 334445778888889999999999999999999999766642     


Q ss_pred             HhCcHHHHHHhhC
Q 042204          309 EAGVCPRLVELLG  321 (559)
Q Consensus       309 ~~g~l~~L~~lL~  321 (559)
                         +++.|++...
T Consensus        78 ---vl~~L~~~y~   87 (92)
T PF10363_consen   78 ---VLPILLDEYA   87 (92)
T ss_pred             ---HHHHHHHHHh
Confidence               3555555443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=91.47  E-value=5.2  Score=42.85  Aligned_cols=204  Identities=14%  Similarity=0.135  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC
Q 042204          245 LRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS  324 (559)
Q Consensus       245 ~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~  324 (559)
                      +..-...|.++...-  +.......++|.|+..+.+  ...+-..+-.+..+....+   +.-....+++.|...++...
T Consensus       290 Ks~Flk~Ls~~ip~f--p~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  290 KSSFLKGLSKLIPTF--PARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             HHHHHHHHHHhhccC--CHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhccCC
Confidence            333444566666543  3334457788888887733  3333333334444443333   22233456788888887532


Q ss_pred             CcchhhHHHHHHHh---hcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHH
Q 042204          325 SSVLSPALQTIGHI---VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPL  401 (559)
Q Consensus       325 ~~v~~~al~~L~nl---~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~L  401 (559)
                      +  ....+.++-++   ....+   ..-+...++|.|..-+++. +..++..++..+..++..-+   -..+..-++|.|
T Consensus       363 ~--~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l  433 (700)
T KOG2137|consen  363 P--KQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRL  433 (700)
T ss_pred             c--ccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHh
Confidence            2  12223333333   22111   1223346788888888888 89999999999888864211   223344578888


Q ss_pred             HHHh-hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          402 INLL-QNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       402 i~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      .++. ...+..++..++-++..++...+...     -...+.++....+..|+.++...+.+..++.-.
T Consensus       434 ~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~-----v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~  497 (700)
T KOG2137|consen  434 KNLAFKTTNLYVKVNVLPCLAGLIQRLDKAA-----VLDELLPILKCIKTRDPAIVMGFLRIYEALALI  497 (700)
T ss_pred             hcchhcccchHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence            7763 45578899999999998884322111     112355666666788999999999888887644

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.25  E-value=14  Score=39.96  Aligned_cols=158  Identities=20%  Similarity=0.198  Sum_probs=88.5

Q ss_pred             CHHHHHHhhCC----CCHHHHHHHHHHHHHHhC----CCchhhhhhhccCCHHHHHHHhchh---hhHhHHHHHHHHHHH
Q 042204          186 AVPIFVKLLAS----PNDDIREQAVWALGNVAG----DSPRCRDLVLSEEALIPLLAQLNEH---AKLSMLRTATWTLSN  254 (559)
Q Consensus       186 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~l~~Ll~ll~~~---~~~~~~~~a~~~L~n  254 (559)
                      .+..+..++.+    +.+.++..|+-+++++..    +.+.+...+ ....++.+...|...   .+..-+..++.+|.|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            45566677765    466788888888888763    211111111 122455566555322   233344556777777


Q ss_pred             hhcCCCCCcHhhHhchHHHHHHhhc---cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchh
Q 042204          255 FCRGMPRPIFEQVRPALPVLAQLVH---SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLS  329 (559)
Q Consensus       255 L~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~  329 (559)
                      +...          ..++.+..++.   .....++..|+++|..++...+...        -+.+..++.+  .+.++|.
T Consensus       473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence            6543          23455555554   2346799999999998886555443        2555666554  3456777


Q ss_pred             hHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 042204          330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN  372 (559)
Q Consensus       330 ~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~  372 (559)
                      .|+..|...   ++..       ..+..+...+....+..|+.
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~s  567 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVAS  567 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHH
Confidence            776665432   1211       23456666666553555543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.04  E-value=2.3  Score=37.51  Aligned_cols=112  Identities=19%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHHHHHHHHHhhc---CC
Q 042204          311 GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC--GALPYLLVLLIHSHKKSIKNHACWTISKITA---GN  385 (559)
Q Consensus       311 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~  385 (559)
                      .++.++..+|.++++.-|..++..+...+..++.  +.+.++  ..+..++.+|+.++.+.+++.++.++..|..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3567889999999999999999999988886532  223222  4577788888887678889999999998875   45


Q ss_pred             HHHHHHHHHc---CCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          386 REQIQAVIDA---GLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       386 ~~~~~~li~~---~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      ++..+++...   ++++.++++++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            6655555433   245555555554  46667777777777653

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=90.97  E-value=5.7  Score=35.50  Aligned_cols=141  Identities=17%  Similarity=0.153  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhcC-Cchh----HHHHH------hCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhh--
Q 042204          159 LQYEAAWALTNIASK-TSED----TKVVI------DHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVL--  224 (559)
Q Consensus       159 ~~~~a~~~L~nl~~~-~~~~----~~~i~------~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--  224 (559)
                      +|..|+.+|..++.. ++..    ...++      ..+.-+.|+. ++.++++.+|..|+.++..+-.....+-...-  
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777764 1111    01111      1223344444 56789999999999999998755432211111  


Q ss_pred             --ccC---------------CHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH--hhHhchHHHHHHhhccCCHhH
Q 042204          225 --SEE---------------ALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF--EQVRPALPVLAQLVHSNDKEV  285 (559)
Q Consensus       225 --~~g---------------~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~--~~~~~~l~~L~~lL~~~d~~v  285 (559)
                        ..+               .-..|+..|....+..+....+.++..|....|....  .....++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence              011               1223444454556777888899999999998865543  344667777778888999999


Q ss_pred             HHHHHHHHHHhccC
Q 042204          286 LTDACWALYFLSNG  299 (559)
Q Consensus       286 ~~~a~~~L~~l~~~  299 (559)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999888744

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.84  E-value=17  Score=42.51  Aligned_cols=148  Identities=14%  Similarity=0.095  Sum_probs=93.3

Q ss_pred             CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHH
Q 042204          311 GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQ  390 (559)
Q Consensus       311 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  390 (559)
                      +++|.|..-|.+.+..+|..|...+|.+......+.. =-.......++.-+... +..+|.++.....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            6889999999999999999999999999986654332 00114455566666677 889999999999888776665433


Q ss_pred             HHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          391 AVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       391 ~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ...   ....+...  +.|++++.....++..+..   ....-.++.. .+..+-+.+.++...|+..|+..|..+.+.
T Consensus       337 ~~~---~~~~l~~~--~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRER--DLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHhh--cCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            322   12222222  2344444333222222111   0111112222 566666667788899999999999888874

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=90.74  E-value=1.1  Score=40.36  Aligned_cols=126  Identities=16%  Similarity=0.115  Sum_probs=79.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCchhhhhhh---------------ccCCHHHHHHHhch-----hhhHhHHHHHHHHHHH
Q 042204          195 ASPNDDIREQAVWALGNVAGDSPRCRDLVL---------------SEEALIPLLAQLNE-----HAKLSMLRTATWTLSN  254 (559)
Q Consensus       195 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~---------------~~g~l~~Ll~ll~~-----~~~~~~~~~a~~~L~n  254 (559)
                      .++.......++..|+|++.....++..+-               +...+..|+..+..     .....-......+|+|
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            344555677888889999876555442221               22356677777754     1234556778889999


Q ss_pred             hhcCCCCCcHhhH--hc--hHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH---hCcHHHHHHhhC
Q 042204          255 FCRGMPRPIFEQV--RP--ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE---AGVCPRLVELLG  321 (559)
Q Consensus       255 L~~~~~~~~~~~~--~~--~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~---~g~l~~L~~lL~  321 (559)
                      +++....+.+...  ..  .+..|+.++.+.+..-+.-++.+|.|+|...+.. ..+..   .++++.|+--|.
T Consensus        85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            9987643333322  22  3677888888887777888999999999665544 34444   245555554444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=90.52  E-value=15  Score=34.43  Aligned_cols=140  Identities=22%  Similarity=0.196  Sum_probs=92.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh
Q 042204          144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV  223 (559)
Q Consensus       144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  223 (559)
                      +|.|+.-+....++..+...+.+|..++..+..+...     ++..|..+...+..+.+.-+...+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            4555554555444999999999999999954222222     35567777777777776667777777765443211   


Q ss_pred             hccCCHHHHHHHh---------chhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh-ccCCHhHHHHHHHHH
Q 042204          224 LSEEALIPLLAQL---------NEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV-HSNDKEVLTDACWAL  293 (559)
Q Consensus       224 ~~~g~l~~Ll~ll---------~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L  293 (559)
                         +.+.+++..+         ..+...+.......++..+|...|.    .-...++.+..++ +++++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               3344444441         1122334445556788889988765    4456778888888 788889999999999


Q ss_pred             HHhcc
Q 042204          294 YFLSN  298 (559)
Q Consensus       294 ~~l~~  298 (559)
                      ..++.
T Consensus       147 ~~Lc~  151 (234)
T PF12530_consen  147 APLCE  151 (234)
T ss_pred             HHHHH
Confidence            99993

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=90.16  E-value=22  Score=36.39  Aligned_cols=188  Identities=12%  Similarity=0.125  Sum_probs=113.5

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCC---chhHHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHHHHhCCC
Q 042204          147 FVEFLMREDYPQLQYEAAWALTNIASKT---SEDTKVVIDHGAVPIFVKLLAS-------PNDDIREQAVWALGNVAGDS  216 (559)
Q Consensus       147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~---~~~~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~  216 (559)
                      +..++...+ .+-|+.|+..+++.+.+.   ...++.+.++=+.+.+-++|.+       ++.-.+..++..|.-+|.+.
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            555566555 688999999999998853   3345667887778888888865       34455667777888887663


Q ss_pred             chh-hhhhhccCCHHHHHHHhchhhhHh------HHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC----HhH
Q 042204          217 PRC-RDLVLSEEALIPLLAQLNEHAKLS------MLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND----KEV  285 (559)
Q Consensus       217 ~~~-r~~i~~~g~l~~Ll~ll~~~~~~~------~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d----~~v  285 (559)
                      .-. ...++  +.++.|+..+.+..+++      +...+-.+|..++...+........|.++.+.++-.-.+    ..+
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            211 11222  25788888886544443      788888899988888666666666899999887654222    222


Q ss_pred             HHHHHHHH-HHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204          286 LTDACWAL-YFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       286 ~~~a~~~L-~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  340 (559)
                      ....+..+ ..+...+ +....+..  ++..+..-+...+...+-..++.|..+..
T Consensus       173 al~Vlll~~~~~~cw~-e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWS-ETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHHhcccCc-CCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            22211111 1111111 12222222  24444444444555667778888876554

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=90.10  E-value=4.2  Score=36.75  Aligned_cols=112  Identities=15%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             CCCCcchhhHHHHHHHhhcCChHHHHHHHh----------------CCChHHHHHHhcCC-----CchhHHHHHHHHHHH
Q 042204          322 HRSSSVLSPALQTIGHIVAGDDFQTQCIIN----------------CGALPYLLVLLIHS-----HKKSIKNHACWTISK  380 (559)
Q Consensus       322 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~----------------~g~l~~L~~lL~~~-----~~~~v~~~a~~~L~n  380 (559)
                      +++......++..|+|++..... ...+++                ...+..|+..+..+     ....-....+.+++|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            34455666788888888875443 222322                23466777777541     133445668889999


Q ss_pred             hhcCCHHHHHHHHHc--CC--HHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204          381 ITAGNREQIQAVIDA--GL--IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR  437 (559)
Q Consensus       381 l~~~~~~~~~~li~~--~~--i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  437 (559)
                      ++. .++.++.+++.  +.  +..|+..+++.+..-|.-++.+|.|++..  .+....|..
T Consensus        85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~  142 (192)
T PF04063_consen   85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS  142 (192)
T ss_pred             hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence            975 47777777743  34  78888888888777778899999999985  333344444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=90.08  E-value=8  Score=34.42  Aligned_cols=71  Identities=20%  Similarity=0.167  Sum_probs=54.0

Q ss_pred             CChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204          353 GALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       353 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~  425 (559)
                      -.++.+.+-|... +...+--|...+..+... ..+.+-.++.. ++..|...|.+.++++...++.+|..++.
T Consensus        38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~  109 (183)
T PF10274_consen   38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVT  109 (183)
T ss_pred             hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4577777777776 555666666666666553 56666666654 88888999999999999999999999954

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=89.86  E-value=28  Score=36.49  Aligned_cols=249  Identities=14%  Similarity=0.091  Sum_probs=122.7

Q ss_pred             CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCH---HHHHHHHHHHHHHhcCCchhHHHHHhCCCHH
Q 042204          112 DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP---QLQYEAAWALTNIASKTSEDTKVVIDHGAVP  188 (559)
Q Consensus       112 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~---~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~  188 (559)
                      ..+.+..+...+..+......  ......    ..+.+.+.....+   ..+.+|+.+|   +.+..+.  ...+.++.+
T Consensus        42 p~e~R~~~~~ll~~~i~~~~~--~~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~L---T~~Grdi--~~~~~~i~~  110 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQDS--SSGLMR----AEFFRDISDPSNDDDFDLRLEALIAL---TDNGRDI--DFFEYEIGP  110 (464)
T ss_pred             CHHHHHHHHHHHHHHHHcccc--ccHHHH----HHHHHHHhcCCCchhHHHHHHHHHHH---HcCCcCc--hhcccchHH
Confidence            456777777777777665321  001111    1222333333223   4555555555   4433333  225667777


Q ss_pred             HHHHhhCCC---------------------------CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhh
Q 042204          189 IFVKLLASP---------------------------NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAK  241 (559)
Q Consensus       189 ~L~~lL~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~  241 (559)
                      .|...+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+.....+
T Consensus       111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~  190 (464)
T PF11864_consen  111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS  190 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence            777766321                           11122233444444443332211111111223333333333333


Q ss_pred             HhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC
Q 042204          242 LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG  321 (559)
Q Consensus       242 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~  321 (559)
                      ....+.++..+-.+..... .+......++..|.......  +....+-.++.||+......       ..+..|..+|.
T Consensus       191 ~~di~~~L~vldaii~y~~-iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~  260 (464)
T PF11864_consen  191 EDDIEACLSVLDAIITYGD-IPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILR  260 (464)
T ss_pred             HHHHHHHHHHHHHHHHcCc-CChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHc
Confidence            4444555555555444331 11222233444444442222  55566777788887433322       24567777773


Q ss_pred             CC------CCcchhhHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHHHHHHHHHhh
Q 042204          322 HR------SSSVLSPALQTIGHIVAGDDFQTQCIINC---GALPYLLVLLIHSHKKSIKNHACWTISKIT  382 (559)
Q Consensus       322 ~~------~~~v~~~al~~L~nl~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  382 (559)
                      .+      +..+..-|+..++.+..+.......-+..   -+++.|...++.. ++.+-.+....+.++.
T Consensus       261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence            32      23355678888888887763222111211   2678888888877 7777778887777776

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=89.86  E-value=19  Score=34.45  Aligned_cols=224  Identities=14%  Similarity=0.051  Sum_probs=129.6

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch-hhhHhHHHHHHHHHHHhhcCCCCCcHhhH
Q 042204          189 IFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE-HAKLSMLRTATWTLSNFCRGMPRPIFEQV  267 (559)
Q Consensus       189 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  267 (559)
                      .|-..|.++++.+|..|+.+|+.+...-+..   .+...-+..|+..+.. -.|......++.++..|.+.+. ......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhhH
Confidence            4556788899999999999999988665531   1222234555554421 1344555555677777765432 222223


Q ss_pred             hchHHHHHHhhc--cCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChH
Q 042204          268 RPALPVLAQLVH--SNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       268 ~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~  344 (559)
                      ..++..+.+-.+  +.-...+..+...+..+.....+..+. ...+.+..+++.+.. .+|+-...+...+..+...-+.
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            333444433222  234567888888888888654433322 223567777887766 4666666666666666543331


Q ss_pred             HHHHHHhCCChHHHHHHhc--------CCC-ch--hHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          345 QTQCIINCGALPYLLVLLI--------HSH-KK--SIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       345 ~~~~~~~~g~l~~L~~lL~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                             ....+.+.+.+.        .+. ++  -.+..-...|.+....++....     -.+|.|++-|.++...++
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHH
Confidence                   223334444432        111 11  1334444455555444444322     268899999999999999


Q ss_pred             HHHHHHHHHHhcCCCH
Q 042204          414 NWAAWAISNATSGGSH  429 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~  429 (559)
                      ..++.+|..++..-.+
T Consensus       226 ~D~L~tL~~c~~~y~~  241 (262)
T PF14500_consen  226 LDSLQTLKACIENYGA  241 (262)
T ss_pred             HHHHHHHHHHHHHCCH
Confidence            9999999888765433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.84  E-value=4.6  Score=44.06  Aligned_cols=312  Identities=16%  Similarity=0.083  Sum_probs=160.2

Q ss_pred             CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH------HhC
Q 042204          111 DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV------IDH  184 (559)
Q Consensus       111 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i------~~~  184 (559)
                      +|..+...+++.+..++.+  ......+++.|+|.+|+..=.-   ...-.....||..|.. .......+      +-+
T Consensus       365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence            3455666788888887765  6777888888888877665221   2344555567777776 32222222      223


Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh------------------hhHhHHH
Q 042204          185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH------------------AKLSMLR  246 (559)
Q Consensus       185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~------------------~~~~~~~  246 (559)
                      .++..-+.+|......-+.++...++-. ..-...-+.+-....++.|+.++..-                  .+.++.+
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~-f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~  517 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAA-FVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF  517 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence            4555566677654444444333322221 11011123334455677777776311                  1233445


Q ss_pred             HHHHHHHHhhcCCCC------CcHhhHhchHHHHHHhhccCC------HhHHHHHHHHHHHhccCCh-------hHHHHH
Q 042204          247 TATWTLSNFCRGMPR------PIFEQVRPALPVLAQLVHSND------KEVLTDACWALYFLSNGKN-------DKIQAV  307 (559)
Q Consensus       247 ~a~~~L~nL~~~~~~------~~~~~~~~~l~~L~~lL~~~d------~~v~~~a~~~L~~l~~~~~-------~~~~~~  307 (559)
                      ..|.+|....+..-.      .......+..+..++-+...+      .+..+..+|-+-.+...-+       ...+.+
T Consensus       518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf  597 (1516)
T KOG1832|consen  518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF  597 (1516)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence            566666655443200      000001112222222221111      2233444444433332222       223456


Q ss_pred             HHhCcHHHHHHhhCCC-CC-------cchhhHHHHHHHhhcCChHHHHHHH----hC---CChHHHHHHhcC---CCchh
Q 042204          308 IEAGVCPRLVELLGHR-SS-------SVLSPALQTIGHIVAGDDFQTQCII----NC---GALPYLLVLLIH---SHKKS  369 (559)
Q Consensus       308 ~~~g~l~~L~~lL~~~-~~-------~v~~~al~~L~nl~~~~~~~~~~~~----~~---g~l~~L~~lL~~---~~~~~  369 (559)
                      ...+.+..++++...+ ++       .....|+.+|..+..-.+-+.+..-    +.   .++..++..-..   ..+++
T Consensus       598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpe  677 (1516)
T KOG1832|consen  598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPE  677 (1516)
T ss_pred             HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHH
Confidence            6677777777776542 22       2344566666655554444433211    11   133333332211   11788


Q ss_pred             HHHHHHHHHHHhhcCCHHH----HH-------------------------------HHHHcCCHHHHHHHhhcCC-----
Q 042204          370 IKNHACWTISKITAGNREQ----IQ-------------------------------AVIDAGLIGPLINLLQNAE-----  409 (559)
Q Consensus       370 v~~~a~~~L~nl~~~~~~~----~~-------------------------------~li~~~~i~~Li~lL~~~~-----  409 (559)
                      +++.|+.+|.|+..+.|+.    +.                               .+...++|..|+++|+...     
T Consensus       678 i~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~a  757 (1516)
T KOG1832|consen  678 IIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTA  757 (1516)
T ss_pred             HHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcH
Confidence            9999999999887643211    11                               1223578999999998653     


Q ss_pred             hhHHHHHHHHHHHHhcCCCH
Q 042204          410 INIKNWAAWAISNATSGGSH  429 (559)
Q Consensus       410 ~~v~~~a~~aL~nl~~~~~~  429 (559)
                      ..+|.-|+.+|.-++...+.
T Consensus       758 D~IRalAc~~L~GLaR~~tV  777 (1516)
T KOG1832|consen  758 DCIRALACRVLLGLARDDTV  777 (1516)
T ss_pred             HHHHHHHHHHHhccccCcHH
Confidence            36899999999999986543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.82  E-value=54  Score=39.63  Aligned_cols=272  Identities=14%  Similarity=0.119  Sum_probs=140.6

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcH
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIF  264 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~  264 (559)
                      .+..++..|..+++..+-.+..+++.++..-+.. ..  -....+.++..+....++-.+..-..++..+-+.. .....
T Consensus       877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            3445556666678888888888888887543321 11  11234556666644455544444455555555544 23333


Q ss_pred             hhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc---
Q 042204          265 EQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA---  340 (559)
Q Consensus       265 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~---  340 (559)
                      ......+..+..+..++ +|.|+..++.++..+.+.........++. -+..+..+|-+..+ .......+++....   
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCc-chhhhhhhhccccccch
Confidence            44455667777777655 56999999999999996655444333333 33344444433222 22222222222222   


Q ss_pred             --------------CChH--HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHH
Q 042204          341 --------------GDDF--QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINL  404 (559)
Q Consensus       341 --------------~~~~--~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~l  404 (559)
                                    ++..  .+. .+....+-...-++.++ ++.++.++..++-++....+.+...   .-+++.|..+
T Consensus      1032 ~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSL 1106 (2067)
T ss_pred             hHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHH
Confidence                          2211  111 11112233334445555 8888999988888876533322111   1146666666


Q ss_pred             hhcCChhHHHHHHHHHHHHhcCCCHHH---HHH--------------HH-HcCChHHHHhcCC-CCChHHHHHHHHHHHH
Q 042204          405 LQNAEINIKNWAAWAISNATSGGSHEQ---IKY--------------LV-REKCIKPLCDLLP-CANPTIVTVCLKGLEN  465 (559)
Q Consensus       405 L~~~~~~v~~~a~~aL~nl~~~~~~~~---~~~--------------l~-~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~  465 (559)
                      +.+...-.+.....++..+......+.   ...              .. +.|+=-.+..+++ ..|.+.+..+++.+.+
T Consensus      1107 l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~ 1186 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSR 1186 (2067)
T ss_pred             hcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            665544444444444444433211100   000              11 3343334455554 4577888888888888


Q ss_pred             HH
Q 042204          466 IL  467 (559)
Q Consensus       466 il  467 (559)
                      ++
T Consensus      1187 ~~ 1188 (2067)
T KOG1822|consen 1187 ML 1188 (2067)
T ss_pred             HH
Confidence            54

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=89.80  E-value=6.6  Score=43.21  Aligned_cols=195  Identities=17%  Similarity=0.167  Sum_probs=115.7

Q ss_pred             HHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHH--HHHHhhccCC-Hh
Q 042204          208 ALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALP--VLAQLVHSND-KE  284 (559)
Q Consensus       208 ~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~--~L~~lL~~~d-~~  284 (559)
                      +|+++....+.....+++.+++..+...+..-...++...+...+.|++...+..........+.  .+-.++...+ .+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            66788888888778888999999999999766778899999999999998764333332222221  2333333333 36


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc-CChHHHHHHHhCCChHHHHHHhc
Q 042204          285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA-GDDFQTQCIINCGALPYLLVLLI  363 (559)
Q Consensus       285 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~g~l~~L~~lL~  363 (559)
                      .-..++..|..+....++.....                   .+..+...+..... ............-+.+.+..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~-------------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECV-------------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcccc-------------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence            66666666666664433211111                   11222222211111 11111111222222222555565


Q ss_pred             CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHH
Q 042204          364 HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAIS  421 (559)
Q Consensus       364 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~  421 (559)
                      ....+..+.-|.|++.+++..+++..+.+.+.++++.+.+.-... ..+++.++...+.
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            544777889999999999988888888888888888887764332 3445555544443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=89.49  E-value=20  Score=34.23  Aligned_cols=214  Identities=19%  Similarity=0.133  Sum_probs=119.1

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhccCCC--C-chHHHH-----------HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 042204          105 VAGVWSDDNNLQLEATTKFRKLLSIER--S-PPIEEV-----------IQSGVVPRFVEFLMREDYPQLQYEAAWALTNI  170 (559)
Q Consensus       105 v~~L~s~~~~~~~~a~~~l~~lls~~~--~-~~~~~i-----------i~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl  170 (559)
                      +.+|.+..+..-..|+..+.+++..-+  . ...+.+           .-.|+.+.+++-|.++.   ....++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            445555555555556655555554321  0 111111           11244555556666644   345566666666


Q ss_pred             hcC-------CchhHHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh
Q 042204          171 ASK-------TSEDTKVVIDHGAVPIFVKLLASPN----DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH  239 (559)
Q Consensus       171 ~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~  239 (559)
                      +.-       ..+.|-.+.-.+.+|.++.-+.+++    ......++..|+.+|....        ...+..++..+...
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            552       2222333333456788888887766    2344567788888873321        11234444444222


Q ss_pred             ---hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHH
Q 042204          240 ---AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRL  316 (559)
Q Consensus       240 ---~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L  316 (559)
                         ...+..+.++..|+.-..  |.    .....+-.++.+|.+.-+.++..++..|..+...-+-...  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence               233444545444443321  21    1234566688888888899999999999998865443322  445678888


Q ss_pred             HHhhCCCCCcchhhHHHHHHHhhc
Q 042204          317 VELLGHRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       317 ~~lL~~~~~~v~~~al~~L~nl~~  340 (559)
                      .++|.++-   -..|+.+|-++.+
T Consensus       234 lrlL~t~~---~~eAL~VLd~~v~  254 (262)
T PF14225_consen  234 LRLLQTDL---WMEALEVLDEIVT  254 (262)
T ss_pred             HHHhCCcc---HHHHHHHHHHHHh
Confidence            89887654   3566777666554

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=89.17  E-value=64  Score=39.63  Aligned_cols=274  Identities=13%  Similarity=0.093  Sum_probs=140.1

Q ss_pred             CCCHHHHHHHHHHHHHhccCC--CCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCH
Q 042204          110 SDDNNLQLEATTKFRKLLSIE--RSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAV  187 (559)
Q Consensus       110 s~~~~~~~~a~~~l~~lls~~--~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i  187 (559)
                      ..+..+...|+..|+++.-.-  ..+....-.+..++..|..++.+....++++..+.|+.++.....    .-+..| =
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence            346678888888888764321  112112223445778888877766658999999999999877322    122333 3


Q ss_pred             HHHHHhh----CCCCHHHHHHHHHHHHHHhCCCchhhhhhhc--cCCHHHHH----HHhchhhhHhHHHHHHHHHHHh--
Q 042204          188 PIFVKLL----ASPNDDIREQAVWALGNVAGDSPRCRDLVLS--EEALIPLL----AQLNEHAKLSMLRTATWTLSNF--  255 (559)
Q Consensus       188 ~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~l~~Ll----~ll~~~~~~~~~~~a~~~L~nL--  255 (559)
                      +.+..++    .+.++.+.+.|..++..|..+.-.   .+..  .+.+.-++    ....+..+.++--.|+..|+++  
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~---~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP---YITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh---hccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence            3333333    456788888888888877644211   1110  12223333    3332222233323333333322  


Q ss_pred             --hcCC----------C-------------C------Cc---HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 042204          256 --CRGM----------P-------------R------PI---FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN  301 (559)
Q Consensus       256 --~~~~----------~-------------~------~~---~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  301 (559)
                        ..+.          .             .      ..   ....-.++..|..+..+.+++|+..|+.+|..+.....
T Consensus      1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence              1110          0             0      00   01122334444455667889999999999988764322


Q ss_pred             -----hHHHHHHHhCcHHHHHHhhCCC----------------CC---c----chhh---HHHHHHHhhcCChHHHHHHH
Q 042204          302 -----DKIQAVIEAGVCPRLVELLGHR----------------SS---S----VLSP---ALQTIGHIVAGDDFQTQCII  350 (559)
Q Consensus       302 -----~~~~~~~~~g~l~~L~~lL~~~----------------~~---~----v~~~---al~~L~nl~~~~~~~~~~~~  350 (559)
                           +.-..+.. +++-.++..+++.                +.   .    ..+.   |++.+.++.+.--.....++
T Consensus      1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076       1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred             ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 22222333 3444444444321                00   0    1223   33333333332111222222


Q ss_pred             hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-----CCHHHHHHHHH
Q 042204          351 NCGALPYLLVLLIHSHKKSIKNHACWTISKITA-----GNREQIQAVID  394 (559)
Q Consensus       351 ~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~li~  394 (559)
                      + +++..|...+..+ +..+-+.++.+|.++..     -+++.+..+++
T Consensus      1459 ~-~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076       1459 K-KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred             H-HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence            2 4555555556666 78888888888888875     25566655543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=88.91  E-value=2.2  Score=38.34  Aligned_cols=110  Identities=10%  Similarity=0.171  Sum_probs=72.5

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHH-HHhcCCchhHHHHHhCCCHHHHHHhhCC---------CCHHHHHHHHHHHHHH
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALT-NIASKTSEDTKVVIDHGAVPIFVKLLAS---------PNDDIREQAVWALGNV  212 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~-nl~~~~~~~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl  212 (559)
                      -...+++.+.+... ..  ..+.-|. .+-.......+.+++.|++..|+.+|..         .+......++.||-.|
T Consensus        67 ~p~~~i~~L~~~~~-~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSRPS-TS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCc-cH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34456666665542 21  2222222 2233345677888899999999998853         4457888899999999


Q ss_pred             hCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204          213 AGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC  256 (559)
Q Consensus       213 ~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~  256 (559)
                      ..........+...+.+..++..+ .+++..++..++..|+.+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            877665555555567888888887 6778899999999998887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=88.75  E-value=4.2  Score=35.64  Aligned_cols=147  Identities=10%  Similarity=0.078  Sum_probs=83.6

Q ss_pred             HhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcCChH
Q 042204          267 VRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       267 ~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~  344 (559)
                      ...+++.|..+++.+ +..++..++++++.|..-++-..+.+...  .+   ..- ...........+. ..++....++
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~l~-~~~~~~~~ee   81 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDISLP-MMGISPSSEE   81 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhHHh-hccCCCchHH
Confidence            356778888888765 68999999999999987777554322211  00   000 0111111122221 1122212222


Q ss_pred             HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204          345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT  424 (559)
Q Consensus       345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~  424 (559)
                          ..-.-++..|+.+|+++.-..-...++.++.+|.......+-..+.. ++|.+++.+...+...++...+-|+.+.
T Consensus        82 ----~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 ----YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence                22224567888888776334444566777777764211112223332 8999999998777788877777776664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=88.59  E-value=16  Score=36.94  Aligned_cols=148  Identities=14%  Similarity=0.087  Sum_probs=87.9

Q ss_pred             HHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc----CC-CchhHHHHHHHHHH
Q 042204          306 AVIEAGVCPRLVELLGHR-SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI----HS-HKKSIKNHACWTIS  379 (559)
Q Consensus       306 ~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~----~~-~~~~v~~~a~~~L~  379 (559)
                      .+.+..-.+.+-.-+... ...-|..|+..+..++..-......++    ...+..+|.    ++ .+..-+..|+..++
T Consensus       205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~  280 (370)
T PF08506_consen  205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIG  280 (370)
T ss_dssp             HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence            445555555555555433 345677788888888865443332222    123333443    22 25667788899999


Q ss_pred             HhhcCCHH------------HHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc
Q 042204          380 KITAGNRE------------QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDL  447 (559)
Q Consensus       380 nl~~~~~~------------~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l  447 (559)
                      .++.....            ++..+....++|.|. --.+..+-++..|++.+..+-..-++++...     +++.++.+
T Consensus       281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~  354 (370)
T PF08506_consen  281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNH  354 (370)
T ss_dssp             HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHH
T ss_pred             HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHH
Confidence            99863211            344555555777665 2224467899999999999887766554433     78999999


Q ss_pred             CCCCChHHHHHHHHHH
Q 042204          448 LPCANPTIVTVCLKGL  463 (559)
Q Consensus       448 L~~~d~~v~~~~l~~l  463 (559)
                      |.+++.-|...|..++
T Consensus       355 L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  355 LQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TTSS-HHHHHHHHHHH
T ss_pred             hCCCCcchhhhhhhhC
Confidence            9998888877776553

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.45  E-value=6.8  Score=37.63  Aligned_cols=145  Identities=19%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhCC--CHHHHHHhhC----CCCHHHHHHHHHHHHHHhCCCchhhhhhhccC--CH
Q 042204          158 QLQYEAAWALTNIASKTSEDTKVVIDHG--AVPIFVKLLA----SPNDDIREQAVWALGNVAGDSPRCRDLVLSEE--AL  229 (559)
Q Consensus       158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~l  229 (559)
                      +-++-++..++-++. ++.....+...+  +...+..++.    +..+..+-.++++++|+....+ .|..+....  .+
T Consensus        78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence            446666666666555 444444443332  2334443332    3567888899999999977644 455555432  23


Q ss_pred             HHHHHHhchh---hhHhHHHHHHHHHHHhhcCC--CCCcHhhHhchHHHHHHhh-c-cCCHhHHHHHHHHHHHhccCChh
Q 042204          230 IPLLAQLNEH---AKLSMLRTATWTLSNFCRGM--PRPIFEQVRPALPVLAQLV-H-SNDKEVLTDACWALYFLSNGKND  302 (559)
Q Consensus       230 ~~Ll~ll~~~---~~~~~~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL-~-~~d~~v~~~a~~~L~~l~~~~~~  302 (559)
                      ...+..+...   .+..++..+...+.|++-..  ..........++..+.+.+ . ..|+++...++-+++++...++.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            3333333232   26778888888888887533  1112222234556666633 2 36899999999999999966654


Q ss_pred             HH
Q 042204          303 KI  304 (559)
Q Consensus       303 ~~  304 (559)
                      ..
T Consensus       236 ~~  237 (268)
T PF08324_consen  236 AK  237 (268)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=88.27  E-value=26  Score=38.34  Aligned_cols=197  Identities=15%  Similarity=0.104  Sum_probs=101.2

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchh---hhHhHHHHHHHHHHHhhcCC-C
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEH---AKLSMLRTATWTLSNFCRGM-P  260 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~---~~~~~~~~a~~~L~nL~~~~-~  260 (559)
                      ++..+.+++.+....-.+ |...|..+.... ....+      .+..+..++...   .+..+...++.+++.+.... .
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            456666776663322222 444444443222 11122      244455555322   23456666666666654322 0


Q ss_pred             ---------CCcHhhHhchHHHHHHhh----ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC---C
Q 042204          261 ---------RPIFEQVRPALPVLAQLV----HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR---S  324 (559)
Q Consensus       261 ---------~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~---~  324 (559)
                               ..........++.+...+    ...|.+-+.-++.+|+|+..  +         ..++.+...+...   +
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccc
Confidence                     111222234444444444    45677888999999999862  1         2467777777765   4


Q ss_pred             CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHH
Q 042204          325 SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLIN  403 (559)
Q Consensus       325 ~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~  403 (559)
                      ..+|..|+++|..++...+...        .+.|..++.+ .++.++|..|..+|... ..+..         .+..+..
T Consensus       538 ~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~-~P~~~---------~l~~i~~  599 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC-NPSPS---------VLQRIAQ  599 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT----HH---------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc-CCCHH---------HHHHHHH
Confidence            5688999999998877665433        3566777644 33678888887776543 12222         3444555


Q ss_pred             HhhcC-ChhHHHHHHH
Q 042204          404 LLQNA-EINIKNWAAW  418 (559)
Q Consensus       404 lL~~~-~~~v~~~a~~  418 (559)
                      .+..+ +..|...+..
T Consensus       600 ~l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  600 SLWNEPSNQVASFVYS  615 (618)
T ss_dssp             HHTT-S-HHHHHHHHH
T ss_pred             HHhhCchHHHHHHHHH
Confidence            55433 4555544433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.09  E-value=11  Score=39.52  Aligned_cols=103  Identities=13%  Similarity=0.098  Sum_probs=77.7

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204          141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR  220 (559)
Q Consensus       141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  220 (559)
                      .|.+..+++.+.+++ ..+|+.++.+|+-+.. .-...+..+-.|.+..|.+-+-+..+.+|.+|+.+|+.+-+....-.
T Consensus        90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            467888888888988 8999999999999887 44444556667888888887778889999999999999875433211


Q ss_pred             hhhhccCCHHHHHHHhchhhhHhHHHHHHH
Q 042204          221 DLVLSEEALIPLLAQLNEHAKLSMLRTATW  250 (559)
Q Consensus       221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~  250 (559)
                           ......++..+..+++.++++.|+.
T Consensus       168 -----n~~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         168 -----NRIVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             -----HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                 1134567777777888888886643

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=87.94  E-value=2.6  Score=36.09  Aligned_cols=74  Identities=12%  Similarity=0.069  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  172 (559)
                      +++..+.+.|+++++..++.|+..|..++..-......++.+.+++..|+.++.....+.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            57888999999999999999999999987764455677888889999999999854448999999998888775

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=87.59  E-value=4.3  Score=34.80  Aligned_cols=71  Identities=10%  Similarity=0.100  Sum_probs=61.8

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENIL  467 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il  467 (559)
                      .+..|.+-|.++++.++..|+..|-.++.++.......+....++..|..++.. .++.|+..++..+....
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            456677778889999999999999999999988888888889999999999977 78899999998887754

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=87.53  E-value=54  Score=36.80  Aligned_cols=92  Identities=15%  Similarity=0.188  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 042204          368 KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCD  446 (559)
Q Consensus       368 ~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  446 (559)
                      +.++..+..+++++|.......+     ..+|.|++-|+.. ...+|.+.+.+++.++..-+     .+ -...+|.+..
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am-~d~YiP~I~~ 1013 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AM-TDRYIPMIAA 1013 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HH-HHHhhHHHHH
Confidence            45777888899999875444322     2678888888654 45777777777777776321     12 2347899999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHhh
Q 042204          447 LLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       447 lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      .|.++++-|+.+++-.|.++++.+
T Consensus      1014 ~L~Dp~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999765

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=87.25  E-value=36  Score=34.50  Aligned_cols=266  Identities=13%  Similarity=0.059  Sum_probs=136.3

Q ss_pred             CHHHHHHHHHHHHHHhCCCchhhhhhhccC---CHHHHHHHhc-hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHH
Q 042204          198 NDDIREQAVWALGNVAGDSPRCRDLVLSEE---ALIPLLAQLN-EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPV  273 (559)
Q Consensus       198 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g---~l~~Ll~ll~-~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~  273 (559)
                      +..+..+|+.+|+.+..+. ..-..+.+.-   ++...+..+. ...+..+....+|+|+.=-.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            6788899999999987543 2222221111   2333344442 334556677777777753222111111222233333


Q ss_pred             HHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCCCCCcchhhHHHHHHHhhc--CCh-HHHH-
Q 042204          274 LAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGHRSSSVLSPALQTIGHIVA--GDD-FQTQ-  347 (559)
Q Consensus       274 L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~--~~~-~~~~-  347 (559)
                      +..+-+ -+...+....+.++.++....+...  .... -.++.++..+-+....++..|..++..+..  +.. .... 
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            333332 4566788889999999987666442  2222 378888888888777788776665554432  111 1111 


Q ss_pred             --HHHhC----C-----ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH-HHHHHHHcCCHHHHHHHhhcCChhHHHH
Q 042204          348 --CIINC----G-----ALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE-QIQAVIDAGLIGPLINLLQNAEINIKNW  415 (559)
Q Consensus       348 --~~~~~----g-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~li~~~~i~~Li~lL~~~~~~v~~~  415 (559)
                        ..++.    +     +.+.|..++.+. +......-+|...-...+++. ..-..+ ...+...-....++|+.+|.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~  293 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ  293 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence              12222    2     233466666663 222333335544433334331 001111 113444444566789999988


Q ss_pred             HHHHHHHHhcC--CCHHHHHHHHHcCChHHHHhcCCCC-Ch----HHHHHHHHHHHHHHHh
Q 042204          416 AAWAISNATSG--GSHEQIKYLVREKCIKPLCDLLPCA-NP----TIVTVCLKGLENILKV  469 (559)
Q Consensus       416 a~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~-d~----~v~~~~l~~l~~il~~  469 (559)
                      |..+-..++..  .+.......+.. +..|+...++.+ ..    ++...++..+.+++-.
T Consensus       294 A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  294 AFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            87776665531  122222222221 344555555432 23    6677788888877744

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=86.99  E-value=3.2  Score=35.59  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK  173 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~  173 (559)
                      .++..|.+.|++.++..++.|+..|..++.+-......++....++..|+.++.....+.++..++..+...+..
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            477888999999999999999999999877654566778888899999999998844489999999999888763

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.97  E-value=6.9  Score=35.65  Aligned_cols=104  Identities=13%  Similarity=0.194  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcC-CchhHHHHHhCCCH
Q 042204          113 NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQYEAAWALTNIASK-TSEDTKVVIDHGAV  187 (559)
Q Consensus       113 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~----~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~g~i  187 (559)
                      ..-...|+..|.-++|+  ++....++++-+--.+..+|...    ..+-+|..++.+++.+... +++....+....++
T Consensus       114 snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv  191 (315)
T COG5209         114 SNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV  191 (315)
T ss_pred             hhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence            44566777777777665  45555555554433334444422    2256889999999998874 44455667778999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHhCCCch
Q 042204          188 PIFVKLLASPNDDIREQAVWALGNVAGDSPR  218 (559)
Q Consensus       188 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  218 (559)
                      |.+++.+...++--+.-|+.++..|.+++..
T Consensus       192 PLcLrIme~gSElSktvaifI~qkil~dDvG  222 (315)
T COG5209         192 PLCLRIMELGSELSKTVAIFIFQKILGDDVG  222 (315)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccchh
Confidence            9999999999888888899999998877654

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.46  E-value=5.2  Score=34.03  Aligned_cols=71  Identities=10%  Similarity=0.007  Sum_probs=60.1

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC------CChHHHHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC------ANPTIVTVCLKGLENIL  467 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~~l~~l~~il  467 (559)
                      .+..+.+-|.++++.++..|+..|-.+..++.+.....+...+++..|+.++..      .++.|+..++..+...-
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            455677778899999999999999999998888888888889999999999953      46789999998887755

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=86.26  E-value=23  Score=36.63  Aligned_cols=261  Identities=11%  Similarity=0.105  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCch-hhh--hhhccCCHHHH
Q 042204          157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPR-CRD--LVLSEEALIPL  232 (559)
Q Consensus       157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~r~--~i~~~g~l~~L  232 (559)
                      +-+.....+++.-+-.+-......+++. .+..+....++ .++..-.....+++.+...... ..+  .-.+...++++
T Consensus        44 eylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f  122 (435)
T PF03378_consen   44 EYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF  122 (435)
T ss_dssp             HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            4455444555444443333333333321 22233333344 4565555555555555432111 111  11233456666


Q ss_pred             HHHhchhhhHhHHHHHHHHHHHhhcCCC-CCcHhhHhchHHHHHHh-hccCCHhHHHHHHHHHHHhccCChhHHHHHHHh
Q 042204          233 LAQLNEHAKLSMLRTATWTLSNFCRGMP-RPIFEQVRPALPVLAQL-VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA  310 (559)
Q Consensus       233 l~ll~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~  310 (559)
                      ...| +..-.+....+...|+.|....+ .........++|.|+.- +......+ -...+.|.......+..+   ...
T Consensus       123 ~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~  197 (435)
T PF03378_consen  123 QEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VAN  197 (435)
T ss_dssp             HHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cch
Confidence            6666 33334566666777777766554 22222334444444322 22111111 222223332222222111   111


Q ss_pred             ----CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHH-HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-C
Q 042204          311 ----GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ-TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-G  384 (559)
Q Consensus       311 ----g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~  384 (559)
                          +++...-+++.+...  -..+...|..+...-+.. .+..+. .++..+..-|++....+..+.-+..++.++. .
T Consensus       198 ~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~  274 (435)
T PF03378_consen  198 NQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY  274 (435)
T ss_dssp             S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence                233444455555432  245777787777655431 121221 3455566666544355666666666666654 3


Q ss_pred             CHHHHHHHHH---cCCHHHHHHHh--h---c-CChhHHHHHHHHHHHHhcC
Q 042204          385 NREQIQAVID---AGLIGPLINLL--Q---N-AEINIKNWAAWAISNATSG  426 (559)
Q Consensus       385 ~~~~~~~li~---~~~i~~Li~lL--~---~-~~~~v~~~a~~aL~nl~~~  426 (559)
                      +++..-..++   .|++..++.-+  .   . ..+.-|+.++-+++++...
T Consensus       275 g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  275 GPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             -HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            4554444443   45555555422  1   1 2334466777777776654

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=86.22  E-value=5.7  Score=33.97  Aligned_cols=72  Identities=13%  Similarity=0.118  Sum_probs=61.2

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILK  468 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~  468 (559)
                      .+..|.+-|.++++.++..|+..|-.++.++.......+...++++.|..++. ..++.|+..++..+.....
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            46667777888999999999999999999887878888888999999999986 4677899999988887653

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.50  E-value=63  Score=35.60  Aligned_cols=303  Identities=12%  Similarity=0.081  Sum_probs=138.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCC--CHHHHHHHHHHHHHHhCCCchh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK-LLASP--NDDIREQAVWALGNVAGDSPRC  219 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~--~~~v~~~a~~~L~nl~~~~~~~  219 (559)
                      .+..+-+-|.-.|...-|..|+..+..++.........++. +.+..+++ +..++  +..-++.++.....++......
T Consensus       362 pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~  440 (960)
T KOG1992|consen  362 PLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTA  440 (960)
T ss_pred             HHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchh
Confidence            33333344443442234566777777777754333333332 33444443 33333  3444556666666666443222


Q ss_pred             hhhhhccC----CHHHHHHH----hch-h-hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHH
Q 042204          220 RDLVLSEE----ALIPLLAQ----LNE-H-AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDA  289 (559)
Q Consensus       220 r~~i~~~g----~l~~Ll~l----l~~-~-~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a  289 (559)
                      +.-+...+    .+..+.+.    |.. + .+-.+.+..  ++-.+..............++|.++.+|..+..-+-.+|
T Consensus       441 ~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~--aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYA  518 (960)
T KOG1992|consen  441 KHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKAD--AIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYA  518 (960)
T ss_pred             hcceeeccccccHHHHHHHHhhHHhccCccccccchhhc--ccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHH
Confidence            22222111    12222211    211 0 111122211  111111111233334456788999999999888899999


Q ss_pred             HHHHHHhccCChhHHHHHHHhC-c-------HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHh---CCChHHH
Q 042204          290 CWALYFLSNGKNDKIQAVIEAG-V-------CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIIN---CGALPYL  358 (559)
Q Consensus       290 ~~~L~~l~~~~~~~~~~~~~~g-~-------l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~---~g~l~~L  358 (559)
                      +.++-.+....+..-..+...+ +       +..|+..++.+...--....+++..+..-.+..+.....   .+.-+.+
T Consensus       519 A~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv  598 (960)
T KOG1992|consen  519 AIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIV  598 (960)
T ss_pred             HHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHH
Confidence            9888776533332101111111 1       222333333333322233444444444433333211111   1222333


Q ss_pred             HHHhcCCCchhHHH---HHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC---CHHH
Q 042204          359 LVLLIHSHKKSIKN---HACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG---SHEQ  431 (559)
Q Consensus       359 ~~lL~~~~~~~v~~---~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~---~~~~  431 (559)
                      ...-+++.+|..-.   ++..++-+.+. .++..+..+.+ .++|.+..+|..+-.+..-.+...++-+....   -++.
T Consensus       599 ~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~-aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~  677 (960)
T KOG1992|consen  599 EEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEE-ALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDS  677 (960)
T ss_pred             HHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence            33345554444332   33333434433 44554444444 48888888887765566666666665555432   2233


Q ss_pred             HHHHH----------HcCChHHHHhcCC
Q 042204          432 IKYLV----------REKCIKPLCDLLP  449 (559)
Q Consensus       432 ~~~l~----------~~~~l~~L~~lL~  449 (559)
                      ...+.          ..|-+++++.+|.
T Consensus       678 ~~~l~~~lLsp~lW~r~gNipalvrLl~  705 (960)
T KOG1992|consen  678 YSPLFPPLLSPNLWKRSGNIPALVRLLQ  705 (960)
T ss_pred             HHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence            22221          2577888887763

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=85.41  E-value=20  Score=39.36  Aligned_cols=157  Identities=17%  Similarity=0.229  Sum_probs=107.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .|..++..|.|.|.....++...+...+..++.+   .     ++..|+...-+..+    ..|+.+|..+-.  |..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence            4678899999999888888888888876654222   1     35566665433331    335556654433  2112 


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                           ..+..|-.++..  +..|-.++..|+.+....|..-..|.+...+..|+..|..+.+..+...|+.+|.-|.-.-
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 233445555553  4677789999999998888777888899999999999988888888888888888887655


Q ss_pred             CCCcHhhHhchHHHHHHhh
Q 042204          260 PRPIFEQVRPALPVLAQLV  278 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL  278 (559)
                      |.........++.++..++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            5444444555555555555

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.31  E-value=34  Score=39.79  Aligned_cols=136  Identities=14%  Similarity=0.106  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHH-Hh-CCCHHHHHH--hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHH
Q 042204          158 QLQYEAAWALTNIASKTSEDTKVV-ID-HGAVPIFVK--LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLL  233 (559)
Q Consensus       158 ~~~~~a~~~L~nl~~~~~~~~~~i-~~-~g~i~~L~~--lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll  233 (559)
                      .++..++-++.+.+..+......+ ++ .|.+-....  ...++..+++...+.++.++....-+   .++. | .+.+.
T Consensus       811 s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~  885 (1610)
T KOG1848|consen  811 SILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVF  885 (1610)
T ss_pred             HHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHH
Confidence            444445555555554332222222 22 233333333  23446778888888888888643222   2222 2 33344


Q ss_pred             HHhc---h---hhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhcc
Q 042204          234 AQLN---E---HAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSN  298 (559)
Q Consensus       234 ~ll~---~---~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~  298 (559)
                      ..+.   .   .....+.+.+..+|.-++.+. +......+.+++..+..+-. ..|..+--.|+..++.+++
T Consensus       886 eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsD  958 (1610)
T KOG1848|consen  886 EMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD  958 (1610)
T ss_pred             HHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence            4432   1   124567777888888888776 66667777888888877764 4466777677666666653

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.05  E-value=61  Score=35.05  Aligned_cols=236  Identities=14%  Similarity=0.086  Sum_probs=134.7

Q ss_pred             HhchHHHHH-HhhccCCHhHHHHHHHHHHHhccCC--hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204          267 VRPALPVLA-QLVHSNDKEVLTDACWALYFLSNGK--NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD  343 (559)
Q Consensus       267 ~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  343 (559)
                      ..++++.+. +.++-+...+-...-..|++.....  ....+.++-.=.=|.|..-|+-.+..||..|+..+-++----+
T Consensus       127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d  206 (1005)
T KOG1949|consen  127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD  206 (1005)
T ss_pred             hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence            355555543 3344344445555555666655322  1111222222223445566777899999999999988764222


Q ss_pred             -----HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCC----HHHHHHHhh-cCChhHH
Q 042204          344 -----FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGL----IGPLINLLQ-NAEINIK  413 (559)
Q Consensus       344 -----~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~----i~~Li~lL~-~~~~~v~  413 (559)
                           +..+.+++ +-...|.++|.++ -+.||..|..-++.+...    .-.++-..+    +..+++-+. +...+||
T Consensus       207 pd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR  280 (1005)
T KOG1949|consen  207 PDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVR  280 (1005)
T ss_pred             CCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence                 23344444 3467899999999 999999999888877642    112222222    223333332 2345888


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHh
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEA  493 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~  493 (559)
                      ..+...|..+..+.  ... .+.+. +++.|-..+.+....|+.+..+.|..|=..-               +.....-+
T Consensus       281 ~svf~gl~~~l~np--~sh-~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr---------------a~~f~~I~  341 (1005)
T KOG1949|consen  281 CSVFKGLPMILDNP--LSH-PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVR---------------AAKFWKIC  341 (1005)
T ss_pred             hhHhcCcHHHHcCc--cch-hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhh---------------hhhhhccc
Confidence            88888888887642  221 12222 4567777778888899999888887754221               12222222


Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCC
Q 042204          494 EGLEKIENLQSHENNEIHEKSVKILETYWCGRVV  527 (559)
Q Consensus       494 g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~  527 (559)
                      -.-..|..|...+-+--+..+.-|+.-||+..-+
T Consensus       342 ~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~  375 (1005)
T KOG1949|consen  342 PMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKP  375 (1005)
T ss_pred             cHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCc
Confidence            2234455555555555555666777778775543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.81  E-value=3.4  Score=38.19  Aligned_cols=79  Identities=22%  Similarity=0.274  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhCCC-------HHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCch-hhhhhhccCC
Q 042204          158 QLQYEAAWALTNIASKTSEDTKVVIDHGA-------VPIFVKLLAS-PNDDIREQAVWALGNVAGDSPR-CRDLVLSEEA  228 (559)
Q Consensus       158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~-------i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~  228 (559)
                      .=|..|+.+|++++- .+.+.+.+...+-       +..|++++.. +++-.||.|+-.|.+++..+.. +|....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            458899999999998 5666666665553       4445555544 7889999999999999965544 5566678889


Q ss_pred             HHHHHHHhc
Q 042204          229 LIPLLAQLN  237 (559)
Q Consensus       229 l~~Ll~ll~  237 (559)
                      +..|+..+.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999984

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=84.78  E-value=45  Score=35.72  Aligned_cols=288  Identities=13%  Similarity=0.156  Sum_probs=149.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+..+=+.+.+++..++--|+-.+.-.-++..++ ++     .++-.|-..+++++ ..++..|+.-|+-.-.++  +++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~d-----palALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-CD-----PALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccc-cC-----HHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            4566666677777666655554443322221111 10     12334556667777 578888877777655543  333


Q ss_pred             HHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          180 VVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      .+..     .|..++.+  ...++.-.|..+|+.+...+..  ..+ ...+++.++..-.........+.....|.-+..
T Consensus       487 ~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            3322     45556655  3456777778888887644322  111 111234444332212233445555445555544


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc---cCChhHHHHHHHhCcHHHHHHhhCCCC---CcchhhH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS---NGKNDKIQAVIEAGVCPRLVELLGHRS---SSVLSPA  331 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~---~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~~~a  331 (559)
                      ++.        ..+...+.-+..-...+...+-..+...+   .++.-.++.       ..+..+-....   ..-+..|
T Consensus       559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~-------q~ll~~cgE~~~~~e~~~~~a  623 (878)
T KOG2005|consen  559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS-------QLLLSFCGEHDADLESEQELA  623 (878)
T ss_pred             ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech-------hhhhhhcCCCccchhhhccch
Confidence            431        11111222222112222222211111111   111111111       11222222211   1223356


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChh
Q 042204          332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEIN  411 (559)
Q Consensus       332 l~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~  411 (559)
                      +--++-++-+.+-..+.     .+..+-.+|..+ ++.+|+..=.+++-++..+|..       +++..|-+...+.|.+
T Consensus       624 vLgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~e  690 (878)
T KOG2005|consen  624 VLGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLE  690 (878)
T ss_pred             hhhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchH
Confidence            66666677666644443     356677888888 9999999989998887766652       4677888888889999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHH
Q 042204          412 IKNWAAWAISNATSGGSHEQI  432 (559)
Q Consensus       412 v~~~a~~aL~nl~~~~~~~~~  432 (559)
                      +...++.+++-+-.+.....+
T Consensus       691 va~naIfamGLiGAGTnNARl  711 (878)
T KOG2005|consen  691 VAMNAIFAMGLIGAGTNNARL  711 (878)
T ss_pred             HHHHHHHHhccccCCcchHHH
Confidence            999999999877666444433

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.49  E-value=8.9  Score=32.35  Aligned_cols=72  Identities=6%  Similarity=-0.005  Sum_probs=60.4

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC---CChHHHHHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC---ANPTIVTVCLKGLENILK  468 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~d~~v~~~~l~~l~~il~  468 (559)
                      .+..|.+-|+++++.++..|+..|-.+..++.+.....+.....+..|..++..   .++.|+..++..+...-.
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            456677778899999999999999999999888777777777888889999865   477899999998887654

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=84.45  E-value=4.9  Score=33.94  Aligned_cols=74  Identities=11%  Similarity=0.011  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHH-HHHHHHHHHHHHhc
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALTNIAS  172 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~-~~~~a~~~L~nl~~  172 (559)
                      .++..+.+.|+++++..++.|+..|-.++..-..+...++....++..|+.++....... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            477888999999999999999999999877644556777778889999999988765333 88888888877665

Unpublished observations. Domain of unknown function.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.89  E-value=7.6  Score=32.76  Aligned_cols=75  Identities=16%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcC
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--DYPQLQYEAAWALTNIASK  173 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~--~~~~~~~~a~~~L~nl~~~  173 (559)
                      .++..|.+.|+++++..++.|+..|..++..-..+...++....++..|+.++...  ..+.++..++..+.+.+..
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            47888899999999999999999999987765344566666668888899999763  3379999999999887763

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=83.66  E-value=40  Score=31.83  Aligned_cols=131  Identities=14%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHhhcCCHH
Q 042204          309 EAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKITAGNRE  387 (559)
Q Consensus       309 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~  387 (559)
                      +...++.++++++.++.    ..-..+|..++..-..+-..+-.|-++.|..++.++. +.-+|..|+.++..++...+.
T Consensus        71 e~~A~~~li~l~~~~~~----~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~  146 (249)
T PF06685_consen   71 EERALPPLIRLFSQDDD----FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI  146 (249)
T ss_pred             hhhhHHHHHHHHcCCcc----hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence            34568999999977654    2333444444433333333334467788888887652 456888899999999876566


Q ss_pred             HHHHHHHcCCHHHHHHH-hhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 042204          388 QIQAVIDAGLIGPLINL-LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC  445 (559)
Q Consensus       388 ~~~~li~~~~i~~Li~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  445 (559)
                      .+..+++  .+..++.. +...+..+...-+..++.+-...--..++.+...|+++..+
T Consensus       147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~  203 (249)
T PF06685_consen  147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF  203 (249)
T ss_pred             CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence            5666655  34444444 43333332333333333332221223455566677776533

The function of this family is unknown.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=83.39  E-value=3  Score=38.53  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhccCCCCchHHHHHhcC-------cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH-HHhCC
Q 042204          114 NLQLEATTKFRKLLSIERSPPIEEVIQSG-------VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV-VIDHG  185 (559)
Q Consensus       114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g-------~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~-i~~~g  185 (559)
                      .-|..|+.+|.|+.-.  ..+.+.++..+       ++..|+++|....++-.|+-|+-.|.+++.++...... -.+.+
T Consensus       139 SPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            5678899999997433  34444444433       45667777777666899999999999999987776644 45678


Q ss_pred             CHHHHHHhhCCCC
Q 042204          186 AVPIFVKLLASPN  198 (559)
Q Consensus       186 ~i~~L~~lL~~~~  198 (559)
                      .|..|+.++.+..
T Consensus       217 ~i~~Li~FiE~a~  229 (257)
T PF12031_consen  217 CISHLIAFIEDAE  229 (257)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999997543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.36  E-value=16  Score=35.33  Aligned_cols=121  Identities=16%  Similarity=0.142  Sum_probs=75.2

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh----cCC--------CCChHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCD----LLP--------CANPTIVTVCLKGLE  464 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~----lL~--------~~d~~v~~~~l~~l~  464 (559)
                      ++|.++.++++.++.+|..++.++..+........-..+.+.|..+.+.+    ++.        .+...+...+..++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            79999999999999999999999999998655444344566776444333    333        345678888999999


Q ss_pred             HHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          465 NILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       465 ~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      .++.........    .....+.. +-..|.+..++.-...+++++.....+.+..++
T Consensus       200 ~L~~~~~~~~~~----~r~~~l~~-~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i  252 (282)
T PF10521_consen  200 SLLKTQENDDSN----PRSTWLDK-ILREGILSSMEHESSFSYPRLRTVLLQQLPPII  252 (282)
T ss_pred             HHHHhhccCCcc----cchHHHHH-HHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence            987764322111    01122223 333444444444333345777666655555444

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.09  E-value=53  Score=38.34  Aligned_cols=61  Identities=18%  Similarity=0.262  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          453 PTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       453 ~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      .+.....+.+|.+++.-.-+.-      -..|.+....++.  ++-+..+..+.++++.-.|...+++.
T Consensus      1070 tet~~ltisgIaklf~e~fk~l------lnln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLL------LNLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHH------HhcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence            3555667777777774332211      1234455555433  56677778889999988888877764

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=82.97  E-value=19  Score=29.80  Aligned_cols=74  Identities=12%  Similarity=0.281  Sum_probs=51.6

Q ss_pred             ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHH-hccHHHHHHHhc--------CCCHHH
Q 042204          440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE-AEGLEKIENLQS--------HENNEI  510 (559)
Q Consensus       440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~-~g~l~~l~~L~~--------~~~~~v  510 (559)
                      +++.|..-|+.+++.|...+|.+|..++..+..            .+...+.+ ...+..+.+...        ..+..|
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~------------~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~V  106 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS------------DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKV  106 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH------------HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHH
Confidence            567788888888999999999999999977542            23433332 233333344333        245679


Q ss_pred             HHHHHHHHHhhcCCC
Q 042204          511 HEKSVKILETYWCGR  525 (559)
Q Consensus       511 ~~~a~~il~~~f~~~  525 (559)
                      +..|..++.-.|+.+
T Consensus       107 R~~A~El~~~if~~~  121 (122)
T cd03572         107 REEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHHHHhccC
Confidence            999999999988764

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1988 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.79  E-value=70  Score=35.42  Aligned_cols=253  Identities=11%  Similarity=0.071  Sum_probs=146.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+..+=++++++....|.++...+-++.... +.+  .++++ .+=.|...+..++ -.+|...+++...--.    ...
T Consensus        25 ~~~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln   95 (970)
T KOG1988|consen   25 VLMELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLN   95 (970)
T ss_pred             HHHHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhccc----cch
Confidence            4456667899888888888888888876542 222  23322 3334555566677 5888888887763222    122


Q ss_pred             HHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          180 VVI-DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       180 ~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      .+. -...+........+.++.-|..++..++.+..-       +.+.+....++..-..+.+.--.+.++.+....+..
T Consensus        96 ~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~l-------ipEfn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~  168 (970)
T KOG1988|consen   96 KVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSAL-------IPEFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQ  168 (970)
T ss_pred             hhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhh-------cccccchhHHHHHHhcCccchhhHHHHHHHhhhhhh
Confidence            221 122334444455678899999999999988543       334445566665543343333445666666666554


Q ss_pred             CCCCcHhhHhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHH
Q 042204          259 MPRPIFEQVRPALPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTI  335 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L  335 (559)
                      ..    .....+.-.+..++...+  +......+.+++.+....      .....+....+.++.. +...-...-+.++
T Consensus       169 sk----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~a------t~A~ra~~l~m~lv~~tps~d~~v~fL~st  238 (970)
T KOG1988|consen  169 SK----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHA------TGASRAFGLCMSLVSGTPSIDRVVAFLYST  238 (970)
T ss_pred             hh----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchh------hhhHHHHHHHHHHhcCCCcccceeeehhhh
Confidence            31    111222233344444333  445667777888776432      2222344556666544 4445556677788


Q ss_pred             HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          336 GHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       336 ~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      .+++...-..     -.+-+..|.+.++.++...++..+.|-+.+++.
T Consensus       239 T~Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~  281 (970)
T KOG1988|consen  239 TNLASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK  281 (970)
T ss_pred             HHHHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            8877633221     124567788888766466677778888877753

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=82.78  E-value=6.8  Score=33.30  Aligned_cols=74  Identities=9%  Similarity=-0.002  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhc
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~  172 (559)
                      .++..+.+.|+++++..++.|+..|..++..-......++...+++..|++++..     ...+.++...+..+..-+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4778889999999999999999999988776545667788888999999999963     1237899999888887765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=82.77  E-value=13  Score=30.81  Aligned_cols=72  Identities=14%  Similarity=0.136  Sum_probs=53.4

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhcCCCCC--------hHHHHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVRE-KCIKPLCDLLPCAN--------PTIVTVCLKGLENIL  467 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d--------~~v~~~~l~~l~~il  467 (559)
                      ++..|.+-|++.++.|+..++..|..++..|.+.....+.+. ..|..+.+.-...|        ..|+..|-+++..|+
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if  118 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF  118 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence            456788888888999999999999999999988877776653 34555555544233        367777878877766


Q ss_pred             H
Q 042204          468 K  468 (559)
Q Consensus       468 ~  468 (559)
                      .
T Consensus       119 ~  119 (122)
T cd03572         119 S  119 (122)
T ss_pred             c
Confidence            3

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.65  E-value=56  Score=37.00  Aligned_cols=76  Identities=17%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC---CCChHHHHHHHHHHHH
Q 042204          389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP---CANPTIVTVCLKGLEN  465 (559)
Q Consensus       389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~---~~d~~v~~~~l~~l~~  465 (559)
                      .+.+..+|.+..+++.+-...++++.+-+..+..++.. ++.....+-..|+++.|.+++.   +........++.++..
T Consensus       901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRa-spfnaelltS~gcvellleIiypflsgsspfLshalkIvem  979 (2799)
T KOG1788|consen  901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARA-SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM  979 (2799)
T ss_pred             HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc-CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence            45677899999999999888899999999999998886 5556666667788888887763   2334445555554443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=82.50  E-value=32  Score=30.25  Aligned_cols=114  Identities=17%  Similarity=0.213  Sum_probs=69.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC--CHHHHHHhhCC-CCHHHHHHHHHHHHHHh---CCC
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG--AVPIFVKLLAS-PNDDIREQAVWALGNVA---GDS  216 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g--~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~~  216 (559)
                      .+..+..+|++.+ +.-|..++..+..++..++  .+.+.+.+  -+..++..|+. ....+.+.|+.+|..|.   .+.
T Consensus        26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5667788898888 7888888888887777332  34443433  46778888876 45677888888888886   344


Q ss_pred             chhhhhhhccCCHHHHHHHhchh-hhHhHHHHHHHHHHHhhcCCC
Q 042204          217 PRCRDLVLSEEALIPLLAQLNEH-AKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       217 ~~~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a~~~L~nL~~~~~  260 (559)
                      |+....+.. ..++.++..+.+- .+......++.+|..+....|
T Consensus       103 p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  103 PTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP  146 (165)
T ss_pred             CchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence            443222221 2233333332111 114556667777777766543

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.40  E-value=12  Score=29.65  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 042204          437 REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVK  516 (559)
Q Consensus       437 ~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~  516 (559)
                      ...++..|+.-+..+.+.....++..+..+++...              -...+.+.|+.+-+.++..+-+++.+.....
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~   93 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDE   93 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence            34567777777888887788899999999875432              4677889999999999999999999988888


Q ss_pred             HHHh
Q 042204          517 ILET  520 (559)
Q Consensus       517 il~~  520 (559)
                      ++++
T Consensus        94 il~~   97 (98)
T PF14726_consen   94 ILDQ   97 (98)
T ss_pred             HHhc
Confidence            8764

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=82.38  E-value=6.3  Score=43.52  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=88.0

Q ss_pred             chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh
Q 042204          327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ  406 (559)
Q Consensus       327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~  406 (559)
                      ++..+.-+|+++|-..+...+     ..+|.|++-|.......+|.....+++.+|...    ..+++ ..+|.+-..|.
T Consensus       947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTD-RYIPMIAASLC 1016 (1529)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHH-HhhHHHHHHhc
Confidence            456677778888776554433     457888888866546778877777777777531    12333 37899999999


Q ss_pred             cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC--hHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          407 NAEINIKNWAAWAISNATSGGSHEQIKYLVREKC--IKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       407 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~--l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      ++++-+|+.+...|.++...+      ++-..|.  +..+..++ +.+++++.-+-..|..+++..
T Consensus      1017 Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             CchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998753      2222332  34444444 567778877777888877653

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=82.20  E-value=20  Score=34.80  Aligned_cols=138  Identities=14%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-HHHHhCCCHHHHHH----hhC--------CCCHHHHHHHHHHH
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT-KVVIDHGAVPIFVK----LLA--------SPNDDIREQAVWAL  209 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~i~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L  209 (559)
                      ++|.++.++++.+ +.++..++.+|..+....+... ..+.+.|..+.+-+    ++.        .+...+...+.-+|
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            7899999999988 9999999999999998443333 34666776554443    333        24455666777777


Q ss_pred             HHHhCC----CchhhhhhhccCCHHHHHHHhchhh---hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC
Q 042204          210 GNVAGD----SPRCRDLVLSEEALIPLLAQLNEHA---KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN  281 (559)
Q Consensus       210 ~nl~~~----~~~~r~~i~~~g~l~~Ll~ll~~~~---~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~  281 (559)
                      ..++.-    ....|......-.-..++.-+....   .+.+....+..+..+...-..........+++.+.+.+.+.
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            777431    1111111111111111222222222   24555555555555544322223333455666666655443

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=81.88  E-value=14  Score=45.97  Aligned_cols=264  Identities=16%  Similarity=0.169  Sum_probs=137.1

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCC-----chHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERS-----PPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVID  183 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~-----~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  183 (559)
                      ...+.+.+..+...+..++.....     +..-.. -..++..+..+-..+.++.++......+.      ...-....+
T Consensus       491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~-v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ  563 (2341)
T KOG0891|consen  491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQV-VKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ  563 (2341)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHH-HHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence            355667777776665555443211     111111 11233333333222222566555444443      112223444


Q ss_pred             CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCCC
Q 042204          184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       184 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~~  260 (559)
                      .+.+..+...+..+.-.+++.+...+++++..+|.+.--.+.    ...+..+.   .+.-.-+......-+..+....+
T Consensus       564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~  639 (2341)
T KOG0891|consen  564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELIISSP  639 (2341)
T ss_pred             chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence            555666777777888889999999999998866632111111    01111111   11100000111111111111111


Q ss_pred             CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhh
Q 042204          261 RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVLSPALQTIGHIV  339 (559)
Q Consensus       261 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~  339 (559)
                      ......+...+..++..+...+..+...+..+++.|+..........++ ..++.+.+.+.. .+..-+..++++++++.
T Consensus       640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~  718 (2341)
T KOG0891|consen  640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE  718 (2341)
T ss_pred             HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence            1122233445566667777788888889999999998665544444444 455555555544 44556788999999998


Q ss_pred             cCChHHHHHHHhC-CChHHHHHHhcCCCchhHHHHHHHHHHHhhcC
Q 042204          340 AGDDFQTQCIINC-GALPYLLVLLIHSHKKSIKNHACWTISKITAG  384 (559)
Q Consensus       340 ~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  384 (559)
                      ...........+. -++..+...+.......+|.++...++++...
T Consensus       719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            7654322212111 34555666666555677888888888877553

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=81.80  E-value=39  Score=30.40  Aligned_cols=144  Identities=16%  Similarity=0.104  Sum_probs=87.8

Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHH
Q 042204          229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAV  307 (559)
Q Consensus       229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~  307 (559)
                      ++.+++.. .+.+..++..|+..+.-+.+.. -.|     ..++|.++.+..++++.++..|...+..+.+..+..+..-
T Consensus        10 l~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen   10 LKNILELC-LSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            55566655 5677889999999998888765 222     4588999999999999999999999999986665554443


Q ss_pred             HHhCcHHH--HHHhhCCCCC-cc---hhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-------chhHHHHH
Q 042204          308 IEAGVCPR--LVELLGHRSS-SV---LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-------KKSIKNHA  374 (559)
Q Consensus       308 ~~~g~l~~--L~~lL~~~~~-~v---~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-------~~~v~~~a  374 (559)
                      ...|+-..  ....+..+.. ..   ....+..+..++.++...+..+     +..|++.+....       .+.-....
T Consensus        84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~  158 (187)
T PF12830_consen   84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFL  158 (187)
T ss_pred             HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHHH
Confidence            33332221  1111222211 11   4455666666666555554433     444555554320       23334556


Q ss_pred             HHHHHHhhc
Q 042204          375 CWTISKITA  383 (559)
Q Consensus       375 ~~~L~nl~~  383 (559)
                      +++..|++.
T Consensus       159 ~Fla~nLA~  167 (187)
T PF12830_consen  159 LFLAENLAT  167 (187)
T ss_pred             HHHHHHHhc
Confidence            666666664

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=81.61  E-value=50  Score=31.53  Aligned_cols=179  Identities=18%  Similarity=0.126  Sum_probs=97.4

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-------hhhhhhccCCHHHHHHHhchhh---hHhHHHHHHHHHHHhh
Q 042204          187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPR-------CRDLVLSEEALIPLLAQLNEHA---KLSMLRTATWTLSNFC  256 (559)
Q Consensus       187 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-------~r~~i~~~g~l~~Ll~ll~~~~---~~~~~~~a~~~L~nL~  256 (559)
                      .+.+.+-+.++  ...+.++..|..++.....       .|-.+.-.+.+|.++..+.+..   .......++..|+.+|
T Consensus        66 q~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a  143 (262)
T PF14225_consen   66 QPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA  143 (262)
T ss_pred             HHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence            33344444443  3445567777777643211       1222222223444555553222   1234556677888888


Q ss_pred             cCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204          257 RGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG  336 (559)
Q Consensus       257 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  336 (559)
                      ........   ..++.....--..+..+....++..|+.-.  -++.     +..++..|+.+|.++.+.++..++.+|.
T Consensus       144 ~~~~~~~L---a~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~  213 (262)
T PF14225_consen  144 EAQGLPNL---ARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH-----EFQILTFLLGLLENGPPWLRRKTLQILK  213 (262)
T ss_pred             HhCCCccH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            65432221   111111111111233445555555555432  1111     1235677899998888899999999999


Q ss_pred             HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          337 HIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      .+...-+-...  ....++..+..+++++    .-.+|..+|-++..
T Consensus       214 ~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  214 VLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             HHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            99876554322  4556788999999776    46677777766654

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.05  E-value=1.1e+02  Score=34.97  Aligned_cols=294  Identities=16%  Similarity=0.115  Sum_probs=153.0

Q ss_pred             hHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--
Q 042204           97 RLEIFAAMVA-GVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK--  173 (559)
Q Consensus        97 ~~~~l~~lv~-~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~--  173 (559)
                      +++++..+-. .|++.+.+.+...+..+.++.+.. ..+-...-+.--+|.|+.-+..-. ..+|...+.+|---...  
T Consensus       464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn  541 (2799)
T KOG1788|consen  464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN  541 (2799)
T ss_pred             chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence            4455544444 456778888888888888876543 444444445567888887776655 46776666655432220  


Q ss_pred             CchhHHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204          174 TSEDTKVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL  252 (559)
Q Consensus       174 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L  252 (559)
                      .-..+.       +-.|+-+|+.+ ...++...+.....+...+..+++.+.+-|.+..|-..++++.-..--.. ..-.
T Consensus       542 cvPeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-ysgv  613 (2799)
T KOG1788|consen  542 CVPEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-YSGV  613 (2799)
T ss_pred             cCcHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-hhhH
Confidence            001111       22355566653 34555556666666666667788888888988888877754310000000 0011


Q ss_pred             HHhhcCCC-CCcHhhH---hchHHHHHHhhcc---CCHh--H---HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh
Q 042204          253 SNFCRGMP-RPIFEQV---RPALPVLAQLVHS---NDKE--V---LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL  320 (559)
Q Consensus       253 ~nL~~~~~-~~~~~~~---~~~l~~L~~lL~~---~d~~--v---~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL  320 (559)
                      +.....+| .+.+...   ...+-.--.++.+   .++-  +   ..-.-.+|..+..++.++...+.++..+..+++++
T Consensus       614 sehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl  693 (2799)
T KOG1788|consen  614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL  693 (2799)
T ss_pred             HHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee
Confidence            11222211 1111110   0011000111222   1110  0   11123355566666666767777777777777777


Q ss_pred             CCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCC-----------chhHHHHHHHHHHHhhcCCHHHH
Q 042204          321 GHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-----------KKSIKNHACWTISKITAGNREQI  389 (559)
Q Consensus       321 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~  389 (559)
                      -  ++.-|...++++..+...++.+..    +.-+-.++..|++.-           .....+....++..+..-+....
T Consensus       694 i--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaq  767 (2799)
T KOG1788|consen  694 I--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQ  767 (2799)
T ss_pred             e--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchhe
Confidence            4  445578889999998887765332    112334555565420           12234444555555543233333


Q ss_pred             HHHHHcCCHHHHHHHhh
Q 042204          390 QAVIDAGLIGPLINLLQ  406 (559)
Q Consensus       390 ~~li~~~~i~~Li~lL~  406 (559)
                      ..+-+++++..|...|.
T Consensus       768 rvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  768 RVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             eehhccccHHHHHHHHH
Confidence            44556777777776663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	559
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-126
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-126
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-124
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-123
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-10
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-123
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		4e-10
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-123
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-10
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-123
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		3e-10
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-123
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		3e-10
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-123
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		4e-10
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-102
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-102
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-102
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-102
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-102
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-102
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-102
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-102
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-102
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-102
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-102
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-102
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-102
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-102
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-102
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-101
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-35
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		5e-28
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-27
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		8e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		6e-24
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-19
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		6e-18

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/460 (74%), Positives = 391/460 (85%), Gaps = 10/460 (2%)
Query: 66  KKESFLRKRREAPPSQQFLSFAPAPN---LNLQTRLEIFAAMVAGVWSDDNNLQLEATTK 122
           ++ES L+KRRE   +Q     AP P      +  +LE   AM+ GV+SDDNNLQLEATT+
Sbjct: 43  REESLLKKRREGLQAQ-----APVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQ 97
Query: 123 FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182
           FRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQ+EAAWALTNIAS TSE+TKVVI
Sbjct: 98  FRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI 157
Query: 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL 242
           DHGAVPIFVKLL S +DD+REQAVWALGNVAGDSP+CRDLVL+  AL+PLLAQLNEH KL
Sbjct: 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL 217
Query: 243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302
           SMLR ATWTLSNFCRG P+P FEQ RPALP LA+L+HSND+EVLTDACWAL +LS+G ND
Sbjct: 218 SMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND 277
Query: 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362
           KIQAVIEAGVCPRLVELL H S SVL PAL+T+G+IV GDD QTQCII+  ALP LL LL
Sbjct: 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 337
Query: 363 IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
             + KKSIK  ACWTIS ITAGN++QIQAVI+AG+IGPL+NLLQ AE +IK  AAWAISN
Sbjct: 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN 397
Query: 423 ATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD 482
           ATSGGSH+QIKYLV E CIKPLCDLL C +  IVTVCL+GLENILKVGE +K +  A GD
Sbjct: 398 ATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTL--AAGD 455
Query: 483 VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           VN ++Q+++EAEGLEKIENLQSH+NNEI+EK+VKILE YW
Sbjct: 456 VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/420 (78%), Positives = 372/420 (88%), Gaps = 2/420 (0%)
Query: 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE 162
           AM+ GV+SDDNNLQLEATT+FRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQ+E
Sbjct: 40  AMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFE 99
Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           AAWALTNIAS TSE+TKVVIDHGAVPIFVKLL S +DD+REQAVWALGNVAGDSP+CRDL
Sbjct: 100 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 159
Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND 282
           VL+  AL+PLLAQLNEH KLSMLR ATWTLSNFCRG P+P FEQ RPALP LA+L+HSND
Sbjct: 160 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSND 219
Query: 283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGD 342
           +EVLTDACWAL +LS+G NDKIQAVIEAGVCPRLVELL H S SVL PAL+T+G+IV GD
Sbjct: 220 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 279
Query: 343 DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLI 402
           D QTQCII+  ALP LL LL  + KKSIK  ACWTIS ITAGN++QIQAVI+AG+IGPL+
Sbjct: 280 DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 339
Query: 403 NLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKG 462
           NLLQ AE +IK  AAWAISNATSGGSH+QIKYLV E CIKPLCDLL C +  IVTVCL+G
Sbjct: 340 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEG 399
Query: 463 LENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           LENILKVGE +K +  A GDVN ++Q+++EAEGLEKIENLQSH+NNEI+EK+VKILE YW
Sbjct: 400 LENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 457

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/425 (57%), Positives = 301/425 (70%), Gaps = 5/425 (1%)
Query: 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQ 158
           I + M+  ++S     QL AT KFRKLLS E +PPI+EVI + GVV RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218
           LQ+E+AW LTNIAS  S  T++VI  GAVPIF++LL+S  +D++EQAVWALGN+AGDS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQL 277
           CRD VL    L PLL   ++  +L+M R A W LSN CRG  P P F +V P L VL+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 278 VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337
           +  +D +VL DACWAL +LS+G NDKIQAVI+AGVC RLVELL H    V+SPAL+ +G+
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGL 397
           IV GDD QTQ I+NC AL   L+ L+ S K+SIK  ACWTIS ITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
              LI++LQ AE   +  AAWAI+NATSGGS EQIKYLV   CIKPLCDLL   +  IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI 517
           V L GLENIL++GE E   +     +N Y  L+EEA GL+KIE LQSHEN EI++K+  +
Sbjct: 380 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437
Query: 518 LETYW 522
           +E Y+
Sbjct: 438 IEHYF 442

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/425 (57%), Positives = 301/425 (70%), Gaps = 5/425 (1%)
Query: 100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQ 158
           I + M+  ++S     QL AT KFRKLLS E +PPI+EVI + GVV RFVEFL R++   
Sbjct: 18  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 77
Query: 159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218
           LQ+E+AW LTNIAS  S  T++VI  GAVPIF++LL+S  +D++EQAVWALGN+AGDS  
Sbjct: 78  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQL 277
           CRD VL    L PLL   ++  +L+M R A W LSN CRG  P P F +V P L VL+ L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 278 VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337
           +  +D +VL DACWAL +LS+G NDKIQAVI+AGVC RLVELL H    V+SPAL+ +G+
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGL 397
           IV GDD QTQ I+NC AL   L+ L+ S K+SIK  ACWTIS ITAGNR QIQ VIDA +
Sbjct: 258 IVTGDDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
              LI++LQ AE   +  AAWAI+NATSGGS EQIKYLV   CIKPLCDLL   +  IV 
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI 517
           V L GLENIL++GE E   +     +N Y  L+EEA GL+KIE LQSHEN EI++K+  +
Sbjct: 377 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 434
Query: 518 LETYW 522
           +E Y+
Sbjct: 435 IEHYF 439

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 254/487 (52%), Positives = 326/487 (66%), Gaps = 41/487 (8%)
Query: 61  EQVNLKK----ESFLRKRREAPPS----------------QQFLSFAPAPNLNLQTRLEI 100
           +QV L+K    E+  ++R   PP+                QQF S        LQ  L  
Sbjct: 39  QQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYS-------QLQQEL-- 89
Query: 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 159
              M   + SDD   QL AT KFR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 90  -PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 160 QYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC 219
           Q EAAWALTNIAS TS  TKVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 220 RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLV 278
           RD VL   A+ P+L   N + K S++RTATWTLSN CRG  P+P +  V  ALP LA+L+
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           +S D E L DACWA+ +LS+G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+I
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G+D QTQ +IN G LP L  LL+ S K++IK  ACWTIS ITAGN EQIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIV 456
            PL+ LL+ AE   K  A WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 457 TVCLKGLENILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSV 515
            V L  LENILK+GEA+K    A G ++N+ A  +E+A G+EKI N Q +EN++I+EK+ 
Sbjct: 446 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502
Query: 516 KILETYW 522
           KI+ETY+
Sbjct: 503 KIIETYF 509

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
           SDD   QL AT KFR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 11  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 69
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
           NIAS TS  TKVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   RD VL   A
Sbjct: 70  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 129
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
           + P+L   N + K S++RTATWTLSN CRG  P+P +  V  ALP LA+L++S D E L 
Sbjct: 130 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 188
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
           DACWA+ +LS+G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 189 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 248
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
            +IN G LP L  LL+ S K++IK  ACWTIS ITAGN EQIQAVIDA LI PL+ LL+ 
Sbjct: 249 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 307
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
           AE   K  A WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+ V L  LEN
Sbjct: 308 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 367
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           ILK+GEA+K    A G ++N+ A  +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 368 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 422

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +      +L 
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
             A   + +I +G   QT+ +++  A+P L + L+++    +K  A W +  +   + + 
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
              V+    + P++ L  + + ++   A W +SN   G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
           SDD   QL AT KFR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 10  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 68
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
           NIAS TS  TKVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   RD VL   A
Sbjct: 69  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
           + P+L   N + K S++RTATWTLSN CRG  P+P +  V  ALP LA+L++S D E L 
Sbjct: 129 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
           DACWA+ +LS+G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 188 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 247
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
            +IN G LP L  LL+ S K++IK  ACWTIS ITAGN EQIQAVIDA LI PL+ LL+ 
Sbjct: 248 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 306
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
           AE   K  A WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+ V L  LEN
Sbjct: 307 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 366
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           ILK+GEA+K    A G ++N+ A  +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 367 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +      +L 
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
             A   + +I +G   QT+ +++  A+P L + L+++    +K  A W +  +   + + 
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
              V+    + P++ L  + + ++   A W +SN   G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
           SDD   QL AT KFR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 12  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 70
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
           NIAS TS  TKVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   RD VL   A
Sbjct: 71  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
           + P+L   N + K S++RTATWTLSN CRG  P+P +  V  ALP LA+L++S D E L 
Sbjct: 131 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
           DACWA+ +LS+G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 190 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 249
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
            +IN G LP L  LL+ S K++IK  ACWTIS ITAGN EQIQAVIDA LI PL+ LL+ 
Sbjct: 250 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 308
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
           AE   K  A WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+ V L  LEN
Sbjct: 309 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 368
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           ILK+GEA+K    A G ++N+ A  +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 369 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +      +L 
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
             A   + +I +G   QT+ +++  A+P L + L+++    +K  A W +  +   + + 
Sbjct: 63  LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
              V+    + P++ L  + + ++   A W +SN   G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 305/424 (71%), Gaps = 11/424 (2%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYE 162
           M   + SDD   QL AT KFR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 5   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           AAWALTNIAS TS  TKVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   RD 
Sbjct: 64  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSN 281
           VL   A+ P+L   N + K S++RTATWTLSN CRG  P+P +  V  ALP LA+L++S 
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG 341
           D E L DACWA+ +LS+G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+IV G
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPL 401
           +D QTQ +IN G LP L  LL+ S K++IK  ACWTIS ITAGN EQIQAVIDA LI PL
Sbjct: 243 NDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 402 INLLQNAEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVC 459
           + LL+ AE   K  A WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+ V 
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 460 LKGLENILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
           L  LENILK+GEA+K    A G ++N+ A  +E+A G+EKI N Q +EN++I+EK+ KI+
Sbjct: 362 LDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 519 ETYW 522
           ETY+
Sbjct: 419 ETYF 422

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +      +L 
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
             A   + +I +G   QT+ +++  A+P L + L+++    +K  A W +  +   + + 
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
              V+    + P++ L  + + ++   A W +SN   G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
           SDD   QL AT KFR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 12  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 70
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
           NIAS TS  TKVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   RD VL   A
Sbjct: 71  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
           + P+L   N + K S++RTATWTLSN CRG  P+P +  V  ALP LA+L++S D E L 
Sbjct: 131 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
           DACWA+ +LS+G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 190 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 249
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
            +IN G LP L  LL+ S K++IK  ACWTIS ITAGN EQIQAVIDA LI PL+ LL+ 
Sbjct: 250 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 308
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
           AE   K  A WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+ V L  LEN
Sbjct: 309 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 368
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           ILK+GEA+K    A G ++N+ A  +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 369 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +      +L 
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
             A   + +I +G   QT+ +++  A+P L + L+++    +K  A W +  +   + + 
Sbjct: 63  LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
              V+    + P++ L  + + ++   A W +SN   G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  437 bits (1124), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/418 (56%), Positives = 303/418 (72%), Gaps = 11/418 (2%)
Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQYEAAWALT 168
           SDD   QL AT KFR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ EAAWALT
Sbjct: 10  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 68
Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
           NIAS TS  TKVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   RD VL   A
Sbjct: 69  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLT 287
           + P+L   N + K S++RTATWTLSN CRG  P+P +  V  ALP LA+L++S D E L 
Sbjct: 129 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 288 DACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
           DACWA+ +LS+G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+IV G+D QTQ
Sbjct: 188 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 247
Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
            +IN G LP L  LL+ S K++IK  ACWTIS ITAGN EQIQAVIDA LI PL+ LL+ 
Sbjct: 248 VVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 306
Query: 408 AEINIKNWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
           AE   K  A WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+ V L  LEN
Sbjct: 307 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 366
Query: 466 ILKVGEAEKNMDTAIG-DVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
           I+K+GEA+K    A G ++N+ A  +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 367 IIKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +      +L 
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 330 -PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
             A   + +I +G   QT+ +++  A+P L + L+++    +K  A W +  +   + + 
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVP-LFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
              V+    + P++ L  + + ++   A W +SN   G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 519 ETYW 522
           E Y+
Sbjct: 474 EKYF 477

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 519 ETYW 522
           E Y+
Sbjct: 474 EKYF 477

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 407 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 519 ETYW 522
           E Y+
Sbjct: 460 EKYF 463

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 519 ETYW 522
           E Y+
Sbjct: 474 EKYF 477

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 519 ETYW 522
           E Y+
Sbjct: 430 EKYF 433

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 405 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 519 ETYW 522
           E Y+
Sbjct: 458 EKYF 461

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 519 ETYW 522
           E Y+
Sbjct: 424 EKYF 427

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 397 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 519 ETYW 522
           E Y+
Sbjct: 450 EKYF 453

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 519 ETYW 522
           E Y+
Sbjct: 423 EKYF 426

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 519 ETYW 522
           E Y+
Sbjct: 424 EKYF 427

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 519 ETYW 522
           E Y+
Sbjct: 419 EKYF 422

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 519 ETYW 522
           E Y+
Sbjct: 423 EKYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 519 ETYW 522
           E Y+
Sbjct: 424 EKYF 427

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 519 ETYW 522
           E Y+
Sbjct: 419 EKYF 422

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/425 (45%), Positives = 274/425 (64%), Gaps = 13/425 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AG     RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 224 LSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L            LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++
Sbjct: 440 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 519 ETYWC 523
           E Y+ 
Sbjct: 493 EKYFS 497

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEA 163
           +V G+ S +   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL R D   +Q+E+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 164 AWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV 223
           AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 224 LSEEALIPLLAQLNEHAKLSM----LRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV 278
           +   A+ PLLA L      S+    LR  TWTLSN CR   P P  + V   LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H +D EVL D CWA+ +L++G N++I  V++ GV P+LV+LLG     +++PAL+ IG+I
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
           V G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L+++L  A+   +  A WA++N TSGG+ EQI YLV    I+PL +LL   +  I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
            L  + NI +  E        +G+  + + ++EE  GL+KIE LQ+HEN  +++ S+ ++
Sbjct: 372 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 519 ETYW 522
           E Y+
Sbjct: 425 EKYF 428

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/250 (39%), Positives = 139/250 (55%), Gaps = 17/250 (6%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
           LP + Q ++S+D +E L+        LS+G N++IQAVI+AG  P LV+LL   +  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
            AL  + +I +G + Q Q +I+ GALP  LV L+ S  + I   A W +S I +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
           QAVIDAG +  L+ LL +    I   A WA+SN  SGG +EQI+ ++    +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 450 CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNE 509
             N  I+   L  L NI   G             N+  Q V+EA  LEK+E LQSHEN +
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 510 IHEKSVKILE 519
           I +++ + LE
Sbjct: 238 IQKEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 4/197 (2%)
Query: 271 LPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP 330
           LP + Q ++S D++ L  A   L  +++G N++IQAVI+AG  P LV+LL   +  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQ 390
           AL  + +I +G + Q Q +I+ GALP  LV L+ S  + I   A W +S I +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 391 AVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC 450
           AVIDAG +  L+ LL +    I   A WA+SN  SGG+ +  K  V+E   +P  + L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 451 A-NPTIVTVCLKGLENI 466
           + N  I     + LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372
            P++V+ L       L  AL+ +  I +G + Q Q +I+ GALP L V L+ S  + I  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQ 72
Query: 373 HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI 432
            A W +S I +G  EQIQAVIDAG +  L+ LL +    I   A WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 433 KYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE 492
           + ++    +  L  LL   N  I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 493 AEGLEKIENLQSHENNEIHEKSVKILE 519
           A  LEK+E LQSHEN +I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 4/197 (2%)
Query: 271 LPVLAQLVHSND-KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
           LP + Q ++S+D +E L+        LS+G N++IQAVI+AG  P LV+LL   +  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
            AL  + +I +G + Q Q +I+ GALP L V L+ S  + I   A W +S I +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
           QAVIDAG +  L+ LL +    I   A WA+SN  SGG +EQ + +     ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 450 CANPTIVTVCLKGLENI 466
             N  I     + LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 105/207 (50%), Gaps = 15/207 (7%)
Query: 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372
            P++ + L          A +    I++  + Q Q +I+ GALP L V L+ S  + I  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPAL-VQLLSSPNEQILQ 72
Query: 373 HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI 432
            A W +S I +G  EQIQAVIDAG +  L+ LL +    I   A WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 433 KYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE 492
           + ++    +  L  LL   N  I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 493 AEGLEKIENLQSHENNEIHEKSVKILE 519
           A  LEK+E LQSHEN +I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Query: 227 EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPA--LPVLAQLVHSNDKE 284
           E L+ LL   +   +    + A   L+    G P    + +  A  + VL +L+ S D E
Sbjct: 5   EKLVKLLTSTDSETQ----KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSE 59
Query: 285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344
           V  +A  AL  +++G ++ I+A+++AG    LV+LL    S V   A + + +I +G D 
Sbjct: 60  VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINL 404
             + I++ G +  +LV L+ S    ++  A   ++ I +G  E I+A++DAG +  L+ L
Sbjct: 120 AIKAIVDAGGV-EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178
Query: 405 LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLE 464
           L + +  ++  AA A++N  SG +   IK +V    ++ L  LL   +  +     + LE
Sbjct: 179 LTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237
Query: 465 NI 466
           NI
Sbjct: 238 NI 239

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 123/246 (50%), Gaps = 15/246 (6%)
Query: 274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ 333
           L +L+ S D E   +A   L  +++G    I+A+++AG    LV+LL    S V   A +
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI 393
            + +I +G D   + I++ G +  +LV L+ S    ++  A   ++ I +G  E I+A++
Sbjct: 67  ALANIASGPDEAIKAIVDAGGV-EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 394 DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP 453
           DAG +  L+ LL + +  ++  AA A++N  S G  E IK +V    ++ L  LL   + 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 454 TIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEK 513
            +     + L NI            A G  +    +V +A G+E ++ L +  ++E+ ++
Sbjct: 185 EVQKEAARALANI------------ASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKE 231
Query: 514 SVKILE 519
           + + LE
Sbjct: 232 AQRALE 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	559
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-174
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-47
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-34
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-168
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-164
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-36
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-61
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-48
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-22
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-64
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-58
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-55
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-48
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-80
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-79
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-47
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-73
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-56
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-49
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-42
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-68
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-57
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-65
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-23
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-53
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-23
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-16
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-52
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-48
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-48
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-51
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-24
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-40
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-32
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-18
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-36
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-30
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-25
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-18
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-32
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-18
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-11
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-10
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	6e-09
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	4e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	6e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	8e-06
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	6e-05

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  497 bits (1282), Expect = e-174
 Identities = 244/434 (56%), Positives = 304/434 (70%), Gaps = 5/434 (1%)

Query: 91  NLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVE 149
           N+ +     I + M+  ++S     QL AT KFRKLLS E +PPI+EVI + GVV RFVE
Sbjct: 12  NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVE 71

Query: 150 FLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWAL 209
           FL R++   LQ+E+AW LTNIAS  S  T++VI  GAVPIF++LL+S  +D++EQAVWAL
Sbjct: 72  FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 131

Query: 210 GNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG-MPRPIFEQVR 268
           GN+AGDS  CRD VL    L PLL   ++  +L+M R A W LSN CRG  P P F +V 
Sbjct: 132 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191

Query: 269 PALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVL 328
           P L VL+ L+  +D +VL DACWAL +LS+G NDKIQAVI+AGVC RLVELL H    V+
Sbjct: 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251

Query: 329 SPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
           SPAL+ +G+IV GDD QTQ I+NC AL   L+ L+ S K+SIK  ACWTIS ITAGNR Q
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQS-LLHLLSSPKESIKKEACWTISNITAGNRAQ 310

Query: 389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL 448
           IQ VIDA +   LI++LQ AE   +  AAWAI+NATSGGS EQIKYLV   CIKPLCDLL
Sbjct: 311 IQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL 370

Query: 449 PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENN 508
              +  IV V L GLENIL++GE E   +     +N Y  L+EEA GL+KIE LQSHEN 
Sbjct: 371 TVMDSKIVQVALNGLENILRLGEQEAKRN--GTGINPYCALIEEAYGLDKIEFLQSHENQ 428

Query: 509 EIHEKSVKILETYW 522
           EI++K+  ++E Y+
Sbjct: 429 EIYQKAFDLIEHYF 442

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  169 bits (429), Expect = 7e-47
 Identities = 58/356 (16%), Positives = 138/356 (38%), Gaps = 21/356 (5%)

Query: 169 NIASKTSEDTKVVI--DHGAVPIFVKLLASPNDDIREQAVWALGNVA--GDSPRCRDLVL 224
            +    ++   + +          ++++ S + + +  A      +     +P   +++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 225 SEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRP-ALPVLAQLVHSNDK 283
           +   +   +  L      ++   + W L+N   G        ++  A+P+  +L+ S  +
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS-SVLSPALQTIGHIVAGD 342
           +V   A WAL  ++         V++  + P L++L   ++  ++   A+  + ++  G 
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 343 DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLI 402
               +       L  +L  L+      +   ACW +S ++ G  ++IQAVIDAG+   L+
Sbjct: 182 SPPPEFAKVSPCLN-VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 403 NLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKG 462
            LL + +  + + A  A+ N  + G   Q + ++    ++ L  LL     +I       
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299

Query: 463 LENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL 518
           + NI              G+  Q  Q V +A     + ++         +++   +
Sbjct: 300 ISNI------------TAGNRAQ-IQTVIDANIFPALISILQTAEFRTRKEAAWAI 342

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  134 bits (339), Expect = 2e-34
 Identities = 55/273 (20%), Positives = 106/273 (38%), Gaps = 16/273 (5%)

Query: 84  LSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGV 143
           L    +P             +   ++  D ++  +A      L S   +  I+ VI +GV
Sbjct: 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDAGV 235

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
             R VE LM  D  ++   A  A+ NI +     T+V+++  A+   + LL+SP + I++
Sbjct: 236 CRRLVELLMHND-YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
           +A W + N+   +      V+ +  + P L  + + A+    + A W ++N   G     
Sbjct: 295 EACWTISNITAGNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ 353

Query: 264 FEQVRPA--LPVLAQLVHSNDKEVLTDACWALYFL-----------SNGKNDKIQAVIEA 310
            + +     +  L  L+   D +++  A   L  +             G N     + EA
Sbjct: 354 IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413

Query: 311 GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
               ++  L  H +  +   A   I H    +D
Sbjct: 414 YGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  488 bits (1257), Expect = e-168
 Identities = 240/467 (51%), Positives = 308/467 (65%), Gaps = 14/467 (2%)

Query: 66  KKESFLRKRREAPPSQQF-------LSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLE 118
           K++  L KRR   P            S   A         +    M   + SDD   QL 
Sbjct: 47  KRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLS 106

Query: 119 ATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178
           AT KFR++LS E  PPI+ VIQ+GVVPR VEF+       LQ EAAWALTNIAS TS  T
Sbjct: 107 ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166

Query: 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE 238
           KVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   RD VL   A+ P+L   N 
Sbjct: 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 226

Query: 239 HAKLSMLRTATWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297
           + K S++RTATWTLSN CRG  P+P +  V  ALP LA+L++S D E L DACWA+ +LS
Sbjct: 227 N-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285

Query: 298 NGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPY 357
           +G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+IV G+D QTQ +IN G LP 
Sbjct: 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPA 345

Query: 358 LLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA 417
           L +LL    K++IK  ACWTIS ITAGN EQIQAVIDA LI PL+ LL+ AE   K  A 
Sbjct: 346 LRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404

Query: 418 WAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKN 475
           WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+ V L  LENILK+GEA+K 
Sbjct: 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 464

Query: 476 MDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
                 ++N+ A  +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 465 ARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  475 bits (1224), Expect = e-164
 Identities = 199/468 (42%), Positives = 282/468 (60%), Gaps = 14/468 (2%)

Query: 60  IEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEA 119
            E    K E       +        +       N  T       +V G+ S++   QL+A
Sbjct: 19  KETAAAKFERQHMDSPDLGTDDDDKA-MADIGSNQGTVNWSVEDIVKGINSNNLESQLQA 77

Query: 120 TTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179
           T   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E+AWALTNIAS TSE TK
Sbjct: 78  TQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137

Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH 239
            V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDLV+   A+ PLLA L   
Sbjct: 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197

Query: 240 ----AKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALY 294
                    LR  TWTLSN CR   P P  + V   LP L +L+H ND EVL D+CWA+ 
Sbjct: 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257

Query: 295 FLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGA 354
           +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+IV G D QTQ +I+ GA
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317

Query: 355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKN 414
           L     LL  + K +I+  A WT+S ITAG ++QIQ V++ GL+  L+ +L  A+   + 
Sbjct: 318 LAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376

Query: 415 WAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEK 474
            AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ V L  + NI +  E   
Sbjct: 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE--- 433

Query: 475 NMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
                +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ ++E Y+
Sbjct: 434 ----KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  140 bits (353), Expect = 6e-36
 Identities = 55/260 (21%), Positives = 110/260 (42%), Gaps = 11/260 (4%)

Query: 99  EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 158
           +I   +V  +  +D  +  ++      L +   +  IE V++ GVVP+ V+ L   +   
Sbjct: 232 QILPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKLLGATE-LP 289

Query: 159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218
           +   A  A+ NI + T E T+ VID GA+ +F  LL +P  +I+++A W + N+      
Sbjct: 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 349

Query: 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVR--PALPVLAQ 276
               V++   L+P L  +   A     + A W ++N+  G        +     +  L  
Sbjct: 350 QIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408

Query: 277 LVHSNDKEVLTDACWALYFLSN------GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP 330
           L+ + D +++     A+  +                + E G   ++  L  H + SV   
Sbjct: 409 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 468

Query: 331 ALQTIGHIVAGDDFQTQCII 350
           +L  I    + ++ + Q ++
Sbjct: 469 SLNLIEKYFSVEEEEDQNVV 488

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  306 bits (785), Expect = 1e-96
 Identities = 67/447 (14%), Positives = 141/447 (31%), Gaps = 18/447 (4%)

Query: 84  LSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGV 143
           LS   A    +    ++ +A+V  + + ++      T      LS  R      + +SG 
Sbjct: 41  LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGG 99

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
           +P  V+ L       + + A   L N+          V   G +   V LL   N     
Sbjct: 100 IPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 158

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
                L  +A  +   + ++L+      L+  +  +    +L T +  L           
Sbjct: 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

Query: 264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR 323
                  +  L   +    + ++ +  W L  LS+    +       G+   LV+LLG  
Sbjct: 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSD 275

Query: 324 SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKIT 382
             +V++ A   + ++   +      +   G +  L+  ++ +  ++ I   A   +  +T
Sbjct: 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335

Query: 383 AGNRE---QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREK 439
           + ++E      AV     +  ++ LL          A   +    +         L  + 
Sbjct: 336 SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQG 394

Query: 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKN--MDTAIGDVNQYA------QLVE 491
            I  L  LL  A+         G      V        ++   G ++  A       ++ 
Sbjct: 395 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 454

Query: 492 EAEGLEKIENLQSHENNEIHEKSVKIL 518
               +     L       I   +  +L
Sbjct: 455 GLNTIPLFVQLLYSPIENIQRVAAGVL 481

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  213 bits (544), Expect = 1e-61
 Identities = 63/386 (16%), Positives = 135/386 (34%), Gaps = 24/386 (6%)

Query: 135 IEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL 194
            +  + +  +P   + L  ED   +  +AA  +  ++ K +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 195 ASPND-DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253
            + ND +        L N++         +     +  L+  L      S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 123

Query: 254 NFCRGMPRPIFEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGV 312
           N                 L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372
              LV ++   +   L      +  +++        I+  G +   L L +    + +  
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA-LGLHLTDPSQRLVQ 242

Query: 373 HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI 432
           +  WT+  ++    +Q       GL+G L+ LL + +IN+   AA  +SN T   +++  
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNK 298

Query: 433 KYLVREKCIKPLCDLL--PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQ-L 489
             + +   I+ L   +        I    +  L ++           T+     + AQ  
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL-----------TSRHQEAEMAQNA 347

Query: 490 VEEAEGLEKIENLQSHENNEIHEKSV 515
           V    GL  +  L    ++    K+ 
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  192 bits (488), Expect = 8e-54
 Identities = 54/345 (15%), Positives = 115/345 (33%), Gaps = 20/345 (5%)

Query: 176 EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQ 235
                 +   A+P   KLL   +  +  +A   +  ++        ++ S + +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 236 LNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYF 295
           +     +   R    TL N        +       +P L +++ S    VL  A   L+ 
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 296 LSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL 355
           L   +     AV  AG   ++V LL   +   L+     +  +  G+      I+  G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 356 PYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNW 415
             L+ ++     + +       +  + +       A+++AG +  L   L +    +   
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 416 AAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKN 475
             W + N     S    K    E  +  L  LL   +  +VT     L N+         
Sbjct: 244 CLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL--------- 290

Query: 476 MDTAIGDVNQYAQLVEEAEGLEKIENL--QSHENNEIHEKSVKIL 518
                 +      +V +  G+E +     ++ +  +I E ++  L
Sbjct: 291 ---TCNNYKN-KMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  175 bits (446), Expect = 6e-48
 Identities = 81/460 (17%), Positives = 146/460 (31%), Gaps = 42/460 (9%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169
           +      L  T++  K+LS+  S     ++++G +      L      +L     W L N
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN 250

Query: 170 IASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL 229
           ++      TK     G +   V+LL S + ++   A   L N+  ++ + + +V     +
Sbjct: 251 LSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 230 IPLLAQL-NEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRP----ALPVLAQLVHSNDKE 284
             L+  +     +  +   A   L +           Q        LPV+ +L+H     
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG-------- 336
            L  A   L             + E G  PRLV+LL                        
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 337 -------------HIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383
                        HI+A D      I     +P L V L++S  ++I+  A   + ++ A
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIP-LFVQLLYSPIENIQRVAAGVLCEL-A 485

Query: 384 GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKP 443
            ++E  +A+   G   PL  LL +    +  +AA  +   +     +  K L  E     
Sbjct: 486 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE-LTSS 544

Query: 444 LCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQ 503
           L    P A      + L        +G  + +          Y Q     + + + E   
Sbjct: 545 LFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMGG 604

Query: 504 SHENNEIHEKSVKILETYWCGRVVGPQPGPQPGLPHAGNE 543
            H   +     +  L           Q       P   N+
Sbjct: 605 HHPGADYPVDGLPDLG--------HAQDLMDGLPPGDSNQ 636

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  100 bits (249), Expect = 3e-22
 Identities = 30/220 (13%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLV 360
           N +  A +     P L +LL      V++ A   +  +   +  +   + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 361 LLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI 420
            + +++          T+  + + +RE + A+  +G I  L+ +L +   ++  +A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 421 SNATSGGSHEQIKYLVRE-KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTA 479
            N       E  K  VR    ++ +  LL   N   + +    L+ +            A
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL------------A 168

Query: 480 IGDVNQYAQLVEEAEGLEK-IENLQSHENNEIHEKSVKIL 518
            G+  +   ++  + G +  +  ++++   ++   + ++L
Sbjct: 169 YGN-QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  300 bits (770), Expect = 1e-95
 Identities = 68/447 (15%), Positives = 143/447 (31%), Gaps = 18/447 (4%)

Query: 84  LSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGV 143
           LS   A    +    ++ +A+V  + + ++      T      LS  R      + +SG 
Sbjct: 44  LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGG 102

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
           +P  V+ L       + + A   L N+          V   G +   V LL   N     
Sbjct: 103 IPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
                L  +A  +   + ++L+      L+  +  +    +L T +  L           
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221

Query: 264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR 323
                  +  L   +    + ++ +  W L  LS+    +       G+   LV+LLG  
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSD 278

Query: 324 SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKIT 382
             +V++ A   + ++   +      +   G +  L+  ++ +  ++ I   A   +  +T
Sbjct: 279 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338

Query: 383 AGNRE---QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREK 439
           + ++E      AV     +  ++ LL          A   +    +         L  + 
Sbjct: 339 SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQG 397

Query: 440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEA--EKNMDTAIGDVNQYA------QLVE 491
            I  L  LL  A+         G      V     E+ ++   G ++  A       ++ 
Sbjct: 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 457

Query: 492 EAEGLEKIENLQSHENNEIHEKSVKIL 518
               +     L       I   +  +L
Sbjct: 458 GLNTIPLFVQLLYSPIENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  218 bits (558), Expect = 2e-64
 Identities = 62/435 (14%), Positives = 125/435 (28%), Gaps = 47/435 (10%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169
           S  +++   A T    L  + +      V  +G + + V  L+ +   +        L  
Sbjct: 112 SPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQI 169

Query: 170 IASKTSEDTKVVIDHGAVPIFVKLLASPND-DIREQAVWALGNVAGDSPRCRDLVLSEEA 228
           +A    E   +++  G     V ++ +     +       L  ++      +  ++    
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGG 228

Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTD 288
           +  L   L       +++   WTL N      +     +   L  L QL+ S+D  V+T 
Sbjct: 229 MQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTC 285

Query: 289 ACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSS--VLSPALQTIGHIVAGDDF-- 344
           A   L  L+         V + G    LV  +        +  PA+  + H+ +      
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345

Query: 345 -QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLIN 403
                +     LP ++ LL       +   A   + +  A        + + G I  L+ 
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIK-ATVGLIRNLALCPANHAPLREQGAIPRLVQ 404

Query: 404 LLQNAEINIKNWAAWAISNATSGG--------------------SHEQIKYLVREKCIKP 443
           LL  A  + +   +   +                                 +     I  
Sbjct: 405 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464

Query: 444 LCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQ 503
              LL      I  V    L  + +  E               A+ +E       +  L 
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEAEGATAPLTELL 510

Query: 504 SHENNEIHEKSVKIL 518
              N  +   +  +L
Sbjct: 511 HSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  202 bits (515), Expect = 2e-58
 Identities = 59/357 (16%), Positives = 122/357 (34%), Gaps = 27/357 (7%)

Query: 166 ALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLS 225
           A+ N+ +         +   A+P   KLL   +  +  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 226 EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG--MPRPIFEQVRPALPVLAQLVHSNDK 283
            + +  ++  +     +   R    TL N          IF+     +P L +++ S   
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVD 115

Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
            VL  A   L+ L   +     AV  AG   ++V LL   +   L+     +  +  G+ 
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175

Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLIN 403
                I+  G    L+ ++     + +       +  + +       A+++AG +  L  
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGL 234

Query: 404 LLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL 463
            L +    +     W + N     S    K    E  +  L  LL   +  +VT     L
Sbjct: 235 HLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290

Query: 464 ENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENL--QSHENNEIHEKSVKIL 518
            N+       K              +V +  G+E +     ++ +  +I E ++  L
Sbjct: 291 SNLTCNNYKNK-------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  193 bits (491), Expect = 5e-55
 Identities = 63/386 (16%), Positives = 136/386 (35%), Gaps = 24/386 (6%)

Query: 135 IEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL 194
            +  + +  +P   + L  ED   +  +AA  +  ++ K +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 195 ASPND-DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253
            + ND +        L N++         +     +  L+  L      S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 126

Query: 254 NFCRGMPRPIFEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGV 312
           N                 L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN 372
              LV ++   +   L      +  +++        I+  G +  L + L    ++ +  
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQ 245

Query: 373 HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI 432
           +  WT+  ++    +Q       GL+G L+ LL + +IN+   AA  +SN T   +++  
Sbjct: 246 NCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNK 301

Query: 433 KYLVREKCIKPLCDLL--PCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQL- 489
             + +   I+ L   +        I    +  L ++           T+     + AQ  
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL-----------TSRHQEAEMAQNA 350

Query: 490 VEEAEGLEKIENLQSHENNEIHEKSV 515
           V    GL  +  L    ++    K+ 
Sbjct: 351 VRLHYGLPVVVKLLHPPSHWPLIKAT 376

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  174 bits (442), Expect = 5e-48
 Identities = 64/371 (17%), Positives = 119/371 (32%), Gaps = 38/371 (10%)

Query: 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE 162
           A+V  + +      L  T++  K+LS+  S     ++++G +       + +   +L   
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLVQN 246

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
             W L N++      TK     G +   V+LL S + ++   A   L N+  ++ + + +
Sbjct: 247 CLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303

Query: 223 VLSEEALIPLLAQL-NEHAKLSMLRTATWTLSNFCRGMPRPIFEQVR------PALPVLA 275
           V     +  L+  +     +  +   A   L +          E  +        LPV+ 
Sbjct: 304 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--HQEAEMAQNAVRLHYGLPVVV 361

Query: 276 QLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI 335
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 336 GHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA 395
                 +  + + I+                        C     I A +      +   
Sbjct: 422 TQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRGL 459

Query: 396 GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTI 455
             I   + LL +   NI+  AA  +         E  + +  E    PL +LL   N  +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 456 VTVCLKGLENI 466
            T     L  +
Sbjct: 518 ATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  112 bits (281), Expect = 2e-26
 Identities = 56/277 (20%), Positives = 95/277 (34%), Gaps = 28/277 (10%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQLQYEAAWALT 168
           SDD N+   A      L +         V Q G +   V  +    D   +   A  AL 
Sbjct: 277 SDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335

Query: 169 NIASKTSEDTKV---VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLS 225
           ++ S+  E       V  H  +P+ VKLL  P+     +A   L       P     +  
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 226 EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEV 285
           + A IP L QL   A     R  +   +                       +     +E+
Sbjct: 396 QGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQFVEGVRMEEI 435

Query: 286 LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ 345
           +     AL+ L+   +++I  +      P  V+LL     ++   A   +  + A D   
Sbjct: 436 VEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEA 493

Query: 346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKIT 382
            + I   GA   L  LL HS  + +  +A   + +++
Sbjct: 494 AEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  251 bits (642), Expect = 4e-80
 Identities = 92/250 (36%), Positives = 133/250 (53%), Gaps = 15/250 (6%)

Query: 270 ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
            LP + Q ++S+D +    A      + +  N++IQAVI+AG  P LV+LL   +  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
            AL  + +I +G + Q Q +I+ GALP L+ LL  S  + I   A W +S I +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
           QAVIDAG +  L+ LL +    I   A WA+SN  S G +EQI+ ++    +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190

Query: 450 CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNE 509
             N  I+   L  L NI   G              +  Q V+EA  LEK+E LQSHEN +
Sbjct: 191 SPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEK 237

Query: 510 IHEKSVKILE 519
           I +++ + LE
Sbjct: 238 IQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  248 bits (636), Expect = 3e-79
 Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 4/239 (1%)

Query: 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE 162
            M   + SDD   QL AT KF ++LS + +  I+ VI +G +P  V+ L   +  Q+  E
Sbjct: 16  QMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQILQE 73

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           A WAL+NIAS  +E  + VID GA+P  V+LL+SPN+ I ++A+WAL N+A         
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVR-PALPVLAQLVHSN 281
           V+   A +P L QL       +L+ A W LSN   G    I   +   ALP L QL+ S 
Sbjct: 134 VIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 192

Query: 282 DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA 340
           ++++L +A WAL  +++G N++ QAV EAG   +L +L  H +  +   A + +  + +
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  164 bits (417), Expect = 4e-47
 Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 5/241 (2%)

Query: 228 ALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVR--PALPVLAQLVHSNDKEV 285
           + +P + Q      +    +AT   S         I + V    ALP L QL+ S ++++
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQI-QAVIDAGALPALVQLLSSPNEQI 70

Query: 286 LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQ 345
           L +A WAL  +++G N++IQAVI+AG  P LV+LL   +  +L  AL  + +I +G + Q
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

Query: 346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL 405
            Q +I+ GALP  LV L+ S  + I   A W +S I +G  EQIQAVIDAG +  L+ LL
Sbjct: 131 IQAVIDAGALP-ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189

Query: 406 QNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
            +    I   A WA+SN  SG  +EQ + +     ++ L  L    N  I     + LE 
Sbjct: 190 SSPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 466 I 466
           +
Sbjct: 249 L 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 386 REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC 445
           R           +  +   L + ++  +  A    S   S   +EQI+ ++    +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALV 60

Query: 446 DLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH 505
            LL   N  I+   L  L NI            A G   Q  Q V +A  L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 506 ENNEIHEKSVKIL 518
            N +I ++++  L
Sbjct: 108 PNEQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  230 bits (590), Expect = 5e-73
 Identities = 74/197 (37%), Positives = 109/197 (55%), Gaps = 2/197 (1%)

Query: 270 ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
            LP + Q ++S D++ L  A   L  +++G N++IQAVI+AG  P LV+LL   +  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
            AL  + +I +G + Q Q +I+ GALP  LV L+ S  + I   A W +S I +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALP-ALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
           QAVIDAG +  L+ LL +    I   A WA+SN  SGG +EQ + +     ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 450 CANPTIVTVCLKGLENI 466
             N  I     + LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  186 bits (475), Expect = 4e-56
 Identities = 75/217 (34%), Positives = 108/217 (49%), Gaps = 15/217 (6%)

Query: 305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364
                    P++V+ L       L  AL+ +  I +G + Q Q +I+ GALP L+ LL  
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424
            +++ I   A W +S I +G  EQIQAVIDAG +  L+ LL +    I   A WA+SN  
Sbjct: 66  PNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 425 SGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVN 484
           S G +EQI+ ++    +  L  LL   N  I+   L  L NI   G              
Sbjct: 125 S-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------- 170

Query: 485 QYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY 521
           +  Q V+EA  LEK+E LQSHEN +I +++ + LE  
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  167 bits (426), Expect = 5e-49
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA 195
                   +P+ V+ L   D  Q    A   L+ IAS  +E  + VID GA+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 196 SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF 255
           SPN+ I ++A+WAL N+A         V+   AL  L+  L       +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 123

Query: 256 CRGMPRPIFEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCP 314
             G    I   +   ALP L QL+ S ++++L +A WAL  +++G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 315 RLVELLGHRSSSVLSPALQTIGHIVA 340
           +L +L  H +  +   A + +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  150 bits (380), Expect = 2e-42
 Identities = 68/245 (27%), Positives = 109/245 (44%), Gaps = 43/245 (17%)

Query: 181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA 240
                 +P  V+ L SP+    + A+  L  +A         V+   AL           
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL----------- 56

Query: 241 KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK 300
                                          P L QL+ S ++++L +A WAL  +++G 
Sbjct: 57  -------------------------------PALVQLLSSPNEQILQEALWALSNIASGG 85

Query: 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLV 360
           N++IQAVI+AG  P LV+LL   +  +L  AL  + +I +G + Q Q +I+ GALP L+ 
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 361 LLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI 420
           LL   +++ ++  A W +S I +G  EQ QAV +AG +  L  L  +    I+  A  A+
Sbjct: 146 LLSSPNEQILQE-ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204

Query: 421 SNATS 425
               S
Sbjct: 205 EKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 386 REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC 445
           R           +  ++  L + +      A   +S   SGG+ EQI+ ++    +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-EQIQAVIDAGALPALV 60

Query: 446 DLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH 505
            LL   N  I+   L  L NI            A G   Q  Q V +A  L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 506 ENNEIHEKSVKIL 518
            N +I ++++  L
Sbjct: 108 PNEQILQEALWAL 120

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  235 bits (600), Expect = 1e-68
 Identities = 69/422 (16%), Positives = 136/422 (32%), Gaps = 27/422 (6%)

Query: 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP-QL 159
           F          D + Q   T   R      R+    E +  G+     +F        Q 
Sbjct: 69  FNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNVQR 123

Query: 160 QYEAAWALTNIASK-TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218
             E +  L +      +      +   A+P   KLL   +  +  +A   +  ++     
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183

Query: 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV 278
              ++ S + +  ++  +     +   R  + TL N        +       +P L  ++
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243

Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
            S    VL  A   L+ L   +     AV  AG   ++V LL   +   L+     +  +
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303

Query: 339 VAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI 398
             G+      I+  G     LV ++ ++           + K+ +       A+++AG +
Sbjct: 304 AYGNQESKLIILASGGPQ-ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362

Query: 399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTV 458
             L   L +    +     W + N     S    K    E  +  L  LL   +  +VT 
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTC 418

Query: 459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENL--QSHENNEIHEKSVK 516
               L N+       K              +V +  G+E +     ++ +  +I E ++ 
Sbjct: 419 AAGILSNLTCNNYKNK-------------MMVCQVGGIEALVRTVLRAGDREDITEPAIC 465

Query: 517 IL 518
            L
Sbjct: 466 AL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  204 bits (521), Expect = 1e-57
 Identities = 77/468 (16%), Positives = 142/468 (30%), Gaps = 44/468 (9%)

Query: 84  LSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGV 143
           L++    +  +        A+V  + +      L  T++  K+LS+  S     ++++G 
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGG 361

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
           +      L      +L     W L N++      TK     G +   V+LL S + ++  
Sbjct: 362 MQALGLHLTDPS-QRLVQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVT 417

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL-NEHAKLSMLRTATWTLSNFCRGMP-- 260
            A   L N+  ++ + + +V     +  L+  +     +  +   A   L +        
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477

Query: 261 RPIFEQVRP--ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE 318
                 VR    LPV+ +L+H      L  A   L             + E G  PRLV+
Sbjct: 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 537

Query: 319 LLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI 378
           LL                     +  + + I+                       AC   
Sbjct: 538 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV----------------------EACTGA 575

Query: 379 SKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVRE 438
             I A +      +     I   + LL +   NI+  AA  +         E  + +  E
Sbjct: 576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAE 633

Query: 439 KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEK 498
               PL +LL   N  + T     L  + +    +           +    VE    L +
Sbjct: 634 GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD----------YKKRLSVELTSSLFR 683

Query: 499 IENLQSHENNEIHEKSVKILETYWCGRVVGPQPGPQPGLPHAGNEGED 546
            E +  +E  ++        E     +          G       G D
Sbjct: 684 TEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMD 731

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  214 bits (546), Expect = 9e-65
 Identities = 57/347 (16%), Positives = 114/347 (32%), Gaps = 34/347 (9%)

Query: 116 QLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS 175
           Q+ A  +          P +++              M          A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 176 EDTKVVIDHGAVPIFVKLLASP-----------NDDIREQAVWALGNVAGDSPRCRDLVL 224
           E    + + G +    +LL              +  +R  A  AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 225 SEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVR--PALPVLAQLV-HSN 281
           S +  +  L    +     + +     L N          + +R   ++  L +      
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 282 DKEVLTDACWALYFLS-NGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP-------ALQ 333
            +  L     AL+ LS +   +K       G    LV  L +RS +            L+
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI 393
            +  ++A ++   Q +     L   L+  + SH  +I ++AC T+  ++A N +  +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQ-TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 394 DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKC 440
           D G +  L NL+ +    I   +A A+ N  +    +     +    
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPG 349

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  101 bits (253), Expect = 1e-23
 Identities = 46/222 (20%), Positives = 81/222 (36%), Gaps = 12/222 (5%)

Query: 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE 162
           A+VA + S+  +LQ    +  R L         + + + G V   +E  +          
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 190

Query: 163 AAWALTNIASKTSED-TKVVIDHGAVPIFVKLLASPNDD----IREQAVWALGNVAG--- 214
              AL N+++  +E+   +    GA+   V  L   +      I E     L NV+    
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250

Query: 215 DSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRP-ALPV 273
            +   R ++     L  LL  L +   L+++  A  TL N     P+         A+ +
Sbjct: 251 TNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM 309

Query: 274 LAQLVHSNDKEVLTDACWALYFLSNGK--NDKIQAVIEAGVC 313
           L  L+HS  K +   +  AL  L   +    K   ++  G  
Sbjct: 310 LKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 19/164 (11%), Positives = 52/164 (31%), Gaps = 12/164 (7%)

Query: 296 LSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL 355
            +  +              +    +       + PA+  +  + + D+     +   G L
Sbjct: 17  RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGL 75

Query: 356 PYLLVLL----------IHSHKKSIKNHACWTISKITAGNREQIQAVI-DAGLIGPLINL 404
             +  LL             +  +++ +A   ++ +T G+      +    G +  L+  
Sbjct: 76  QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 135

Query: 405 LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL 448
           L++   +++   A  + N +        K L     +K L +  
Sbjct: 136 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  187 bits (475), Expect = 2e-53
 Identities = 70/447 (15%), Positives = 137/447 (30%), Gaps = 70/447 (15%)

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
           +P+ V++L  +D  + Q   A+ + +   +     + V   G +   V LL SPN ++++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
            A  AL N+   S   +     +  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 264 FEQVRPALPVLAQLV----------------HSNDKEVLTDACWALYFLSNGKNDKIQAV 307
            E +  ALPVLA  V                   D EV  +A   L  LS+    +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 308 IEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHK 367
             +G+   L+  + +  ++           +    +   +           L     +  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 368 KSIKNHACWTISKITAGNREQIQA-------------VIDAGLIGPLINLLQNAEIN-IK 413
               +  C++       N                   +  +  I   +NL+  ++ +   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 414 NWAAWAISNATSG----GSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469
              A A+ N T+      S       ++EK +  +  LL   N  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 470 GEAEKNMDTA---------------------------------IGDVNQYAQLVEEAEGL 496
               + M                                    +    Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 497 EKIENL-QSHENNEIHEKSVKILETYW 522
             I NL +S  + +  E +  +L   W
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  100 bits (250), Expect = 8e-23
 Identities = 38/308 (12%), Positives = 85/308 (27%), Gaps = 28/308 (9%)

Query: 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDD 200
           SG              P++ + A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 201 IREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF----- 255
            R         +         L          L     +A      T  ++  +      
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 256 --------CRGMPRPIFEQVRPAL--PVLAQLVHSNDKEVLTDACWALYFLSNGKNDK-- 303
                       P+              L  +  S     L     AL  L+  K     
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 304 ---IQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLV 360
                  ++    P++  LL   +S V+      + ++          ++     P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 361 LLIHSHKKSIKN-----HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI-NIKN 414
           LL      +  +      AC+T+  + A   +  +    + ++  +INL +++       
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 415 WAAWAISN 422
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.9 bits (196), Expect = 4e-16
 Identities = 29/266 (10%), Positives = 72/266 (27%), Gaps = 20/266 (7%)

Query: 269 PALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVL 328
             +P   Q + S D++      + +           Q V + G   +LV+LL   + +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 329 SPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ 388
             A   + ++V               +   + LL  +    I+      +  +++ +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E 119

Query: 389 IQAVIDAGLIGPLINLL----------------QNAEINIKNWAAWAISNATSGGSHEQI 432
           ++  + A  +  L + +                +  +  +   A   + N +S  +  Q 
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 433 KYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE 492
             +     +                   K +EN + V         A             
Sbjct: 180 --MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

Query: 493 AEGLEKIENLQSHENNEIHEKSVKIL 518
                +  +     N      +    
Sbjct: 238 RNAYTEKSSTGCFSNKSDKMMNNNYD 263

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  183 bits (466), Expect = 4e-52
 Identities = 61/298 (20%), Positives = 107/298 (35%), Gaps = 26/298 (8%)

Query: 152 MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-----------PNDD 200
           M          A   L  + S   E    + + G +    +LL              +  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 201 IREQAVWALGNVA-GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM 259
           +R  A  AL N+  GD      L   +  +  L+AQL       + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRA 274

Query: 260 PRPIFEQVR--PALPVLAQLV-HSNDKEVLTDACWALYFLS-NGKNDKIQAVIEAGVCPR 315
                + +R   ++  L +       +  L     AL+ LS +   +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 316 LVELLGHRSSSVLSP-------ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKK 368
           LV  L +RS +            L+ +  ++A ++   Q +     L  LL  L  SH  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSL 393

Query: 369 SIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG 426
           +I ++AC T+  ++A N +  +A+ D G +  L NL+ +    I   +A A+ N  + 
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  172 bits (437), Expect = 6e-48
 Identities = 72/454 (15%), Positives = 156/454 (34%), Gaps = 67/454 (14%)

Query: 72  RKRREAPPSQQFLSFAPAPNLN--LQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSI 129
                   S   +       L   L T++E+  ++++ + + D   + + +   R LL++
Sbjct: 3   SSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAM 56

Query: 130 ERSPPIEEVI-QSGVVPRFVEFLMRED-----------YPQLQYEAAWALTNIASKTSED 177
             S      + QSG +P  ++ L   D             + +  A+ AL NI     +D
Sbjct: 57  SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDD 116

Query: 178 TKVVIDHGAVPIFVKL------------------------LASPNDDIREQAVWALGNVA 213
            +   +   + +  ++                        + +P +     AV  L  ++
Sbjct: 117 KRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLS 176

Query: 214 GDSPRCRDLVLSEEALIPLLAQL----------NEHAKLSMLRTATWTLSNFCRGMP--R 261
            D    R  +     L  +   L          N+H  +++ R A   L+N   G    +
Sbjct: 177 FD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 235

Query: 262 PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVI-EAGVCPRLVELL 320
                ++  +  L   + S  +++       L  LS   +   +  + E G    L+E  
Sbjct: 236 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295

Query: 321 GH-RSSSVLSPALQTIGHIVA-GDDFQTQCIINCGALPYLLVLLIHSHKKS---IKNHAC 375
              +  S L   L  + ++ A   + +       GAL +L+  L +  + +   I     
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355

Query: 376 WT---ISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI 432
                +S + A N +  Q + +   +  L+  L++  + I + A   + N  S  + +  
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-SARNPKDQ 414

Query: 433 KYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI 466
           + L     +  L +L+   +  I       L N+
Sbjct: 415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  172 bits (436), Expect = 8e-48
 Identities = 69/403 (17%), Positives = 131/403 (32%), Gaps = 39/403 (9%)

Query: 10  LPSLERLLVDDCTNMKIFSRGELSTPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKES 69
           LP L +LL  +  +  +      S     +        A  A        I       + 
Sbjct: 72  LPLLIQLLHGNDKDSVLLGNSRGSKEARAR--------ASAA-----LHNIIHSQPDDKR 118

Query: 70  FLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSI 129
             R+ R     +Q  ++        +            + +   +    A     KL   
Sbjct: 119 GRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178

Query: 130 ERSPPIEEVIQSGVVPRFVEFL----------MREDYPQLQYEAAWALTNIASKTSEDTK 179
           E       + + G +    E L                 L+  A  ALTN+      +  
Sbjct: 179 EEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 236

Query: 180 VVI-DHGAVPIFVKLLASPNDDIREQAVWALGNVAGD-SPRCRDLVLSEEALIPLLAQLN 237
            +    G +   V  L S ++D+++     L N++       +  +    ++  L+    
Sbjct: 237 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296

Query: 238 EHAKLSMLRTAT---WTLSNFCRGMPRPIFEQVRPALPVLAQLV----HSNDKEVLTDAC 290
           E  K S L++     W LS  C      I   V  AL  L   +     +N   ++    
Sbjct: 297 EVKKESTLKSVLSALWNLSAHCTENKADICA-VDGALAFLVGTLTYRSQTNTLAIIESGG 355

Query: 291 WALYFLSN---GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ 347
             L  +S+      D  Q + E      L++ L   S +++S A  T+ ++ A +    +
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415

Query: 348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQ 390
            + + GA+  +L  LIHS  K I   +   +  + A    + +
Sbjct: 416 ALWDMGAVS-MLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  184 bits (468), Expect = 2e-51
 Identities = 70/454 (15%), Positives = 151/454 (33%), Gaps = 67/454 (14%)

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           L S+ +  P     +   +P  +  L       ++  AA  L ++  +  +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVA-GDSPRCRDLVLSEEALIPLLAQLNEHAKLSM 244
            +P+ V LL  P  ++   A  AL N++ G     +  + + + +  L+  L +   + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 245 LRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV------------------HSNDKEVL 286
               T TL N          E V  AL  L   V                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 287 TDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH----------------------- 322
           T+    L  +S+ +++  + + E  G+   L+ ++                         
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 323 --------RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHA 374
                   ++      A     +         + +     +   + LL  S   +I   +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 375 CWTISKITAGNR---EQIQAVI-DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHE 430
              I  + AG       I++ +     +  + +LL N    +   A+ A+ N        
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA---VDA 386

Query: 431 QIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLV 490
           + K L+ +  I  L   LP       +      + ++ +      +   I +  + A+ +
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQN--SSWNFSEDTVISILNTINEV---IAENLEAAKKL 441

Query: 491 EEAEGLEKIENL--QSHENNEIHEKSVKILETYW 522
            E +G+EK+  +    + + +    +  +L+T W
Sbjct: 442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  105 bits (262), Expect = 4e-24
 Identities = 50/377 (13%), Positives = 106/377 (28%), Gaps = 68/377 (18%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169
                + L A    + +           +     VP  V  L +     L       L N
Sbjct: 101 HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWN 160

Query: 170 IASKTSEDTKVVIDHGAVPIFVKLLASPN------------------DDIREQAVWALGN 211
           ++S   +  K+ I   A+      +  P+                  + +       L N
Sbjct: 161 LSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRN 218

Query: 212 VAGDSPRCRDLVLSEEALIPLLAQLNEHAKLS------MLRTATWTLSNFCR-------- 257
           V+ +    R  +   + L+  L  + +           ++      L N           
Sbjct: 219 VSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278

Query: 258 -------------------GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN 298
                                   +  Q       ++ L  S    +L  +  A+  L  
Sbjct: 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCA 338

Query: 299 GK----NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGA 354
           G+         A+ +      + +LL +    V+  A   + ++      + + +I   A
Sbjct: 339 GRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--RNKELIGKHA 396

Query: 355 LPYLLVLLIHSHKKSIKN-------HACWTISKITAGNREQIQAVIDAGLIGPLINLLQN 407
           +P L+  L    + S  N           TI+++ A N E  + + +   I  L+ + ++
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456

Query: 408 --AEINIKNWAAWAISN 422
                     AA  +  
Sbjct: 457 GNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 56.9 bits (136), Expect = 1e-08
 Identities = 40/224 (17%), Positives = 72/224 (32%), Gaps = 21/224 (9%)

Query: 47  EACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVA 106
           E C      L+  + +   + E   R +  AP        +PA    L  + E+    ++
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAE---RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYIS 315

Query: 107 GVWSDDNNLQLEATTKFRKLLSIERSPPIEE----VIQSGVVPRFVEFLMREDYPQLQYE 162
            +        LEA+    + L   R          + Q   +    + L  E   ++   
Sbjct: 316 LLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH-ERVVKA 374

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPN--------DDIREQAVWALGNVAG 214
           A+ AL N+A       K +I   A+P  VK L            +D     +  +  V  
Sbjct: 375 ASGALRNLAV--DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432

Query: 215 DSPRCRDLVLSEEALIPLLAQLNEHAKLS--MLRTATWTLSNFC 256
           ++      +   +  I  L  +N+    S   +R A   L    
Sbjct: 433 ENLEAAKKLRETQG-IEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  148 bits (374), Expect = 1e-40
 Identities = 38/238 (15%), Positives = 80/238 (33%), Gaps = 3/238 (1%)

Query: 139 IQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPN 198
           + S  +P       +    Q +  A   L ++              G   +  + L +  
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 199 DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG 258
             +R +A   +G  + +    ++ VL   AL  LL  L+  A  ++   A + +S   R 
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 259 MPRPIFEQVR-PALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV 317
               + + +R     VL + +    +++   + + L  L  G  +    +   G+  +LV
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 318 ELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHAC 375
            L+    S      L  +  +V       +          L  LL H  +   ++   
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  125 bits (314), Expect = 3e-32
 Identities = 44/256 (17%), Positives = 90/256 (35%), Gaps = 9/256 (3%)

Query: 268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSV 327
           +P  P   +   + D++    A   L  L    ++       +G+   +   L   ++ +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 328 LSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE 387
              A Q IG          + ++  GAL  LL LL      +++  A + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 388 QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDL 447
            +   +       L+  +Q     +K  +A+ + N    G  E    L     ++ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVAL 217

Query: 448 LPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHEN 507
           +   +       L  L +++   +  + +           +L+       + + LQ HE 
Sbjct: 218 VRTEHSPFHEHVLGALCSLVT--DFPQGVRECREPELGLEELLR-----HRCQLLQQHEE 270

Query: 508 N-EIHEKSVKILETYW 522
             E  E   K+L+T +
Sbjct: 271 YQEELEFCEKLLQTCF 286

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 85.5 bits (211), Expect = 1e-18
 Identities = 20/176 (11%), Positives = 59/176 (33%), Gaps = 3/176 (1%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169
           +    L+  A            +   E+V+  G + + +  L R+    ++ +A +A++ 
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 170 IASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL 229
           +  +        +      + ++ +      ++ ++ + L N+    P  +  + S    
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM- 210

Query: 230 IPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEV 285
           +  L  L               L +     P+ +  + R     L +L+    + +
Sbjct: 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-RECREPELGLEELLRHRCQLL 265

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  143 bits (360), Expect = 3e-36
 Identities = 56/428 (13%), Positives = 136/428 (31%), Gaps = 31/428 (7%)

Query: 114 NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK 173
           +    A+    ++         +       +  +++  +     + +     A+T + + 
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 174 TSED-TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPL 232
             +   +VV   G + + + +  + ++  +  A   L   +    + + L    E  + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALC---EQGVDI 334

Query: 233 LAQLNEHAKLSMLRTATWTLSNFCRGM-----PRPIFEQVRPALPVLAQ---LVHSNDKE 284
           L +L       +   A   L             RP  +     L    +   +    DK+
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF 344
           +   A   L +L+     K + + +      L++L    + S L   + T  ++    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINL 404
           Q         LP ++ L   + +   + H    +  I     ++I  + + G+   L  L
Sbjct: 455 QEM-------LPEMIELAKFAKQHIPEEHELDDVDFI----NKRITVLANEGITTALCAL 503

Query: 405 LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLE 464
            +    N +   A  ++     G  E    +V+E  +K L  +             + L 
Sbjct: 504 AKTESHNSQELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561

Query: 465 NILKVGEAEKNMDTAIGDVN---QYAQLVEEAEGLEKIENLQSHEN--NEIHEKSVKILE 519
            I      E +                L ++   LE  E+L +  N  +       +I++
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621

Query: 520 TYWCGRVV 527
                ++ 
Sbjct: 622 EQGVSKIE 629

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  125 bits (314), Expect = 2e-30
 Identities = 61/448 (13%), Positives = 122/448 (27%), Gaps = 100/448 (22%)

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT------- 178
            L+++     + +     +   ++     +     Y       N+ +   +         
Sbjct: 405 YLTLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463

Query: 179 -------------------------KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA 213
                                     V+ + G       L  + + + +E     L  V 
Sbjct: 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523

Query: 214 GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPAL- 271
           G     R  V+ E  +  LL    E  +    R AT  L+     + P   F   R    
Sbjct: 524 GL-KELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDV 581

Query: 272 --PVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
             P+L  L          ++  AL  L++      Q +I+     ++   L      +  
Sbjct: 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTR 641

Query: 330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI 389
            A Q + ++V  +D       N   + +L +L     +++                    
Sbjct: 642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATA----------------- 684

Query: 390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP 449
                                      A A++  TS       K L     +  L  L+ 
Sbjct: 685 --------------------------CAGALAIITSVSVKCCEKILAIASWLDILHTLIA 718

Query: 450 CANPTIVTVCLKGLENILKVGEA-----------------EKNMDTAIGDVNQYAQ-LVE 491
             +P +    +  + N++  GE                   +  D       + A   + 
Sbjct: 719 NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLA 778

Query: 492 EAEGLEKIENLQSHENNEIHEKSVKILE 519
            AE    IE   + E  ++  ++ KI E
Sbjct: 779 AAERYRIIERSDNAEIPDVFAENSKISE 806

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  110 bits (276), Expect = 1e-25
 Identities = 33/221 (14%), Positives = 65/221 (29%), Gaps = 4/221 (1%)

Query: 110 SDDNNLQLEATTKFRKLL-SIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALT 168
                 +  AT    ++  +I             V+   +  L ++      +E+  ALT
Sbjct: 547 EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606

Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
           N+AS      + +I    V      L   +  +   A   L N+   S     +      
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNND 665

Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPA--LPVLAQLVHSNDKEVL 286
            +  LA L E             L+       +   + +  A  L +L  L+ +    V 
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725

Query: 287 TDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSV 327
                 +  + N   +  + + E  +   L  L      + 
Sbjct: 726 HRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 86.4 bits (213), Expect = 7e-18
 Identities = 34/237 (14%), Positives = 80/237 (33%), Gaps = 4/237 (1%)

Query: 84  LSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQ-LEATTKFRKLLSIERSPPIEEVIQSG 142
           ++  P  + + Q  L++   ++  +  D   L+  E+      L S+  +  + + I   
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM--NESVRQRIIKE 622

Query: 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIR 202
                +E+ + ED+  L   AA  L N+            ++  V     L    +++  
Sbjct: 623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETA 682

Query: 203 EQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP 262
                AL  +   S +C + +L+  + + +L  L  +   ++       + N        
Sbjct: 683 TACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742

Query: 263 IFEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE 318
             +      + +L+ L    D         A   L+  +  +I    +    P +  
Sbjct: 743 AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  124 bits (312), Expect = 1e-32
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 19/202 (9%)

Query: 144 VPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIR 202
           + R V  L  +   P     AA  + +   + SE  K V     +   ++LL   N+D++
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 203 EQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP 262
                AL N+  +    +  V     +  LL  L +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 263 IFEQVRPALPVLAQLV----------------HSNDKEVLTDACWALYFLSNGKNDKIQA 306
               +  AL  L + +                   D ++  +    L  +S+   D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 307 VIEA-GVCPRLVELLGHRSSSV 327
           +    G+   LV  +    +  
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADY 210

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 81.9 bits (202), Expect = 9e-18
 Identities = 23/203 (11%), Positives = 67/203 (33%), Gaps = 24/203 (11%)

Query: 266 QVRPALPVLAQLVHSNDK--EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR 323
            +   L     ++ ++      ++ A   +      K++  + V +     +L++LL  +
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 324 SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383
           +  V       + ++V  D+     +     +P LL +L  +     K      +  +++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 384 GNREQIQAVIDAGLIGPLINLL----------------QNAEINIKNWAAWAISNATSGG 427
              ++++ ++    +  L   +                   + +I       + N +S G
Sbjct: 125 N--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182

Query: 428 SHEQIKYLVREK--CIKPLCDLL 448
                +  +R     I  L   +
Sbjct: 183 --ADGRKAMRRCDGLIDSLVHYV 203

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 19/154 (12%)

Query: 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE 162
            ++  +   + ++Q       R  L  E +    EV +   VPR ++ L +    + + +
Sbjct: 56  KLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ 114

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASP----------------NDDIREQAV 206
               L N++S  ++  K ++   A+    + +  P                + DI     
Sbjct: 115 ITGLLWNLSS--NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVT 172

Query: 207 WALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA 240
             L N++      R  +   + LI  L       
Sbjct: 173 GCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT 206

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 90.1 bits (223), Expect = 2e-20
 Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 27/241 (11%)

Query: 99  EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 158
            +   ++  +  D   +   A      ++ I ++      +   ++ +    L + +   
Sbjct: 32  SVLKKLIELLDDDLWTVVKNA---ISIIMVIAKTRE---DLYEPMLKKLFSLLKKSEAIP 85

Query: 159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR 218
           L  E A A   +A +  E  K +I     P+        ++  +    +AL  +A  +P 
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV 278
               ++     + +L+  N   KL+ L        NF   M    F+ V P LP +  L+
Sbjct: 141 LMASIV--RDFMSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRIINLL 190

Query: 279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI 338
           H  D+ V   A  AL  L+   +   + VI      + +E L   SS V     + I  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244

Query: 339 V 339
           +
Sbjct: 245 L 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 70.9 bits (173), Expect = 7e-14
 Identities = 30/201 (14%), Positives = 71/201 (35%), Gaps = 20/201 (9%)

Query: 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIR 202
           V+ + +E L  +D   +   A   +  IA    +  + ++      +F  L  S    + 
Sbjct: 33  VLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 203 EQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP 262
           ++   A G +A + P         +++IP+L               ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPE------LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 263 IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH 322
               +   +     ++ S ++E    A   +  +       +   +     PR++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 323 RSSSVLSPALQTIGHIVAGDD 343
               V + A++ + H+   +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 32/297 (10%), Positives = 77/297 (25%), Gaps = 65/297 (21%)

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           L +  +    +E+ +          L+ +     +  +A  L     +            
Sbjct: 16  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRGGQD----------- 54

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AV + ++  +  N   R+   + LG +             +     L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKSACVR 108

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
            TA  + +  C+  P    +     +             V     +A+        +   
Sbjct: 109 ATAIESTAQRCKKNPIYSPK----IVEQSQITAFDKSTNVRRATAFAI-----SVINDKA 159

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
            +      P L+ LL   +  V + A   I      +                + +L   
Sbjct: 160 TI------PLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK 204

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
           + + ++  A   +S              D  ++  L + L+     + +    A   
Sbjct: 205 N-EEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN--TVYDDIIEAAGE 247

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 35/269 (13%), Positives = 77/269 (28%), Gaps = 52/269 (19%)

Query: 198 NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257
           N   + +A    G              +++ L  LL   N   +     ++   L     
Sbjct: 3   NTYQKRKASKEYGLYNQCKKL------NDDELFRLLDDHNSLKR----ISSARVLQLR-- 50

Query: 258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV 317
                     + A+ +  +     +        + L     G+    +   +        
Sbjct: 51  --------GGQDAVRLAIEFCSDKNYIRRDIGAFIL-----GQIKICKKCEDNVFNILNN 97

Query: 318 ELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT 377
             L  +S+ V + A+++       +   +        +    +        +++    + 
Sbjct: 98  MALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKST-NVRRATAFA 151

Query: 378 ISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR 437
           IS I            D   I  LINLL++   +++NWAA+AI+                
Sbjct: 152 ISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN---------- 190

Query: 438 EKCIKPLCDLLPCANPTIVTVCLKGLENI 466
                   ++L   N  +    + GL   
Sbjct: 191 SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 42/188 (22%)

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           + S  +      +    +V +       +    ++   A+A++ I            D  
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
            +P+ + LL  PN D+R  A +A+     D+   RD        + +L   NE  +    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209

Query: 246 RTATWTLSNFCRGMPRPIF------EQVRP-------------ALPVLAQLV-HSNDKEV 285
             A   LS         +         V                LPVL  ++   +D E+
Sbjct: 210 IEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEI 269

Query: 286 LTDACWAL 293
           +T A   L
Sbjct: 270 ITSAIDKL 277

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 57/245 (23%)

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
           V  +++ L  +    ++  AA+AL  I  +            AV   +K L   +  +R 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIGDER-----------AVEPLIKALKDEDAWVRR 68

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
            A  ALG +             E A+ PL+  L +     + ++A   L     G  R  
Sbjct: 69  AAADALGQIG-----------DERAVEPLIKAL-KDEDGWVRQSAAVALGQI--GDER-- 112

Query: 264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR 323
                 A+  L + +   D  V   A +AL  + +      +AV        L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 324 SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA 383
              V   A   +G I  G +              +  L         +  A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGT-GFARKVAVNYLETHKS 203

Query: 384 GNREQ 388
            N   
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 43/249 (17%), Positives = 75/249 (30%), Gaps = 56/249 (22%)

Query: 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKL 242
           D   V +++K L   +  +R  A +ALG             + +E  +  L +  +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGK------------IGDERAVEPLIKALKDEDA 64

Query: 243 SMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND 302
            + R A   L     G  R        A+  L + +   D  V   A  AL     G+  
Sbjct: 65  WVRRAAADALGQI--GDER--------AVEPLIKALKDEDGWVRQSAAVAL-----GQIG 109

Query: 303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL 362
             +AV        L++ L      V   A   +G I  GD+          A+  L+  L
Sbjct: 110 DERAV------EPLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 363 IHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISN 422
                  ++  A   + +I               +   +  L +      +  A   +  
Sbjct: 153 KDED-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 423 ATSGGSHEQ 431
             S   H  
Sbjct: 201 HKSFNHHHH 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 9e-13
 Identities = 62/426 (14%), Positives = 135/426 (31%), Gaps = 145/426 (34%)

Query: 140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT---SEDTKVVID-----HGAVPIFV 191
           Q  +V +FVE ++R +Y        + ++ I ++    S  T++ I+     +    +F 
Sbjct: 75  QEEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 192 KLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT 251
           K                  NV     R           +    +L +   L  LR A   
Sbjct: 128 KY-----------------NV----SR-----------LQPYLKLRQA--LLELRPAKNV 153

Query: 252 LSNFCRGMPRPIFEQVRPALP-----VLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQA 306
           L +   G+                   +A  V     +V     + +++L+    +  + 
Sbjct: 154 LID---GV------------LGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 307 VIE--AGVCPRLVELLGHRSSSVLSPALQT------IGHIVAGDDFQTQCIINCGALPYL 358
           V+E    +  ++      RS    +  L+       +  ++    ++     NC     L
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-----NC-----L 247

Query: 359 LVLLIHSHKKSIK--NHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWA 416
           LVLL   + K+    N +C  +  +T   ++    V D       ++      I      
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQ----VTDF------LSAATTTHI------ 289

Query: 417 AWAISNATSGGSHEQIKYLVREKCIKPLCDLLP---CA-NPTIVTVCLKGLENILKVGEA 472
             ++ + +   + +++K L+  K +      LP      NP  +++          + E+
Sbjct: 290 --SLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSI----------IAES 336

Query: 473 EKNMDTAIGDVNQYAQLVEEAEGLEKI-----ENLQSHENNE------IHEKSVKI---- 517
            ++        + +  +    + L  I       L+  E  +      +   S  I    
Sbjct: 337 IRDGLATW---DNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 518 LETYWC 523
           L   W 
Sbjct: 392 LSLIWF 397

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 45/195 (23%)

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
           V  +++ L  +    ++  AA+AL  I  +            AV   +K L   +  +R 
Sbjct: 16  VEMYIKNLQDDS-YYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRR 63

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
            A  ALG             + +E  +  L +  +     + ++A   L     G  R  
Sbjct: 64  AAADALGQ------------IGDERAVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 107

Query: 264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR 323
                 A+  L + +   D  V   A +AL  + +      +  +E      L++ L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 324 SSSVLSPALQTIGHI 338
              V   A   +G I
Sbjct: 151 DGWVRQSAADALGEI 165

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 43/235 (18%), Positives = 74/235 (31%), Gaps = 56/235 (23%)

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
            V +++K L   +  +R  A +ALG +             E A+ PL+  L +     + 
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKAL-KDEDAWVR 62

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           R A   L     G  R        A+  L + +   D  V   A  AL     G+    +
Sbjct: 63  RAAADALGQI--GDER--------AVEPLIKALKDEDGWVRQSAAVAL-----GQIGDER 107

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
           AV        L++ L      V   A   +G I  GD+          A+  L+  L   
Sbjct: 108 AV------EPLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKALKDE 150

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI 420
               ++  A   + +I               +   +  L +      +  A   +
Sbjct: 151 D-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYL 193

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 65/445 (14%), Positives = 139/445 (31%), Gaps = 39/445 (8%)

Query: 89  APNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS---GVVP 145
           A    LQ   ++   + + + S+D N    A    +K+          +V+      ++P
Sbjct: 118 ASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177

Query: 146 RFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQA 205
           +F++F      P+++  A   +       ++   + ID   +     L      ++R+  
Sbjct: 178 KFLQFFKHSS-PKIRSHAVACVNQFIISRTQALMLHIDS-FIENLFALAGDEEPEVRKNV 235

Query: 206 VWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR-GMPRPIF 264
             AL  +         L+     ++  + Q  +    ++   A           + + + 
Sbjct: 236 CRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293

Query: 265 EQVRPAL-PVLAQLVHSNDKEVLTD----------------------ACWALYFLSNGKN 301
            +  P L PVL   +  +D +++                        +  AL  L+N   
Sbjct: 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353

Query: 302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL 361
           D++   I     P L ELL H    V    +  +G I  G        +    +P+L+  
Sbjct: 354 DELLPHI----LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQC 408

Query: 362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS 421
           L       +++  CWT+S+       Q        L+  L+  + ++   ++  A  A +
Sbjct: 409 LSDKKAL-VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFA 467

Query: 422 NATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIG 481
                   E + YL     +  L           + +    +  +        N    I 
Sbjct: 468 TLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ 525

Query: 482 DVNQYAQLVEEAEGLEKIENLQSHE 506
            +             E  +     E
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLE 550

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 55/416 (13%), Positives = 137/416 (32%), Gaps = 39/416 (9%)

Query: 64  NLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNN----LQLEA 119
           NL  +     RR A  + +   FA    L L         M + + SD+ +    L +EA
Sbjct: 171 NLCSDDTPMVRRAA--ASKLGEFAKV--LELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 226

Query: 120 TTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK 179
                +LL        +E +++ V+P   +    +   +++Y  A   T +      +  
Sbjct: 227 CVNIAQLLP-------QEDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGPE-- 276

Query: 180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH 239
            +     VP F  L+     ++R  A   +     +        +    ++P + +L   
Sbjct: 277 -ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD 335

Query: 240 AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG 299
           A   +       +      + +    +    LP+    +     EV  +    L  +   
Sbjct: 336 ANQHVKSALASVIMGLSPILGKDNTIEH--LLPLFLAQLKDECPEVRLNIISNLDCV--N 391

Query: 300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA--GDDFQTQCIINCGALPY 357
           +   I+ + ++ + P +VEL       V    ++ +  +    G +F  + + +      
Sbjct: 392 EVIGIRQLSQS-LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS------ 444

Query: 358 LLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA 417
           L +  +  H  +I+  A   + K+     ++        +I  ++ +  +     +    
Sbjct: 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT---IIPKVLAMSGDPNYLHRMTTL 501

Query: 418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAE 473
           + I+  +     +     +    +  +  +       +     K L+ I  + +  
Sbjct: 502 FCINVLSEVCGQDITTKHM----LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.8 bits (147), Expect = 6e-10
 Identities = 35/318 (11%), Positives = 104/318 (32%), Gaps = 31/318 (9%)

Query: 136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV-VIDHGAVPIFVKLL 194
            E+ ++ +VP F   LM++   +++  A+  +       S D +  VI    +P   +L+
Sbjct: 275 PEITKTDLVPAFQN-LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333

Query: 195 ASPNDDIREQAVWALGNVA---GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT 251
           +  N  ++      +  ++   G       L+      +  L       +L+++      
Sbjct: 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLL---PLFLAQLKDECPEVRLNIISNLDCV 390

Query: 252 LSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAG 311
                    R + + +   LP + +L       V       +  L+     +     +  
Sbjct: 391 NEVI---GIRQLSQSL---LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEK 441

Query: 312 VCPRLVELLGHRSSSVLSPALQTIGHIVA--GDDFQTQCIINCGALPYLLVLLIHSHKKS 369
           +    +  L     ++   A   +  +V   G ++    II        ++ +       
Sbjct: 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP------KVLAMSGDPNYL 495

Query: 370 IKNHACWTISKI-TAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGS 428
            +    + I+ +     ++     +    +  ++ +  +   N++   A ++        
Sbjct: 496 HRMTTLFCINVLSEVCGQDITTKHM----LPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551

Query: 429 HEQIKYLVREKCIKPLCD 446
           +  ++  V +  ++ L  
Sbjct: 552 NSTLQSEV-KPILEKLTQ 568

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 56.4 bits (135), Expect = 6e-09
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 14/211 (6%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169
            DD   +L A     ++L    S     V++   +  F+   + ++  ++  +A  AL  
Sbjct: 44  EDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALSQENEKVTIKALRALGY 101

Query: 170 IASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALG--NVAGDSPRCRDLVLSEE 227
           +       +K  +   A    V LL SP+D +R + +  L       DS   R  +    
Sbjct: 102 LVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV 159

Query: 228 ALIPLLAQ------LNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVR-PALPVLAQLVHS 280
               L  +             S        + +    + +   E +   AL VL + +  
Sbjct: 160 VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219

Query: 281 NDKEVLTDACWALY-FLSNGKNDKIQAVIEA 310
              E +      +   +      +   +I  
Sbjct: 220 PLLENVKIELLKISRIVDGLVYREGAPIIRL 250

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 43/294 (14%)

Query: 116 QLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS 175
           +L       ++L       +   ++       +  L  ED    +  A  AL  I  +  
Sbjct: 11  ELRELVLSWQILDA-----VSLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRAD 65

Query: 176 EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR-CRDLVLSEEALIPLLA 234
            D ++++    + +F+  L+  N+ +  +A+ ALG +  D P   +  + + + L+ LL 
Sbjct: 66  SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLE 125

Query: 235 QLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALY 294
             ++  ++  +                    +++P         +               
Sbjct: 126 SPDDMMRIETIDVL----------------SKLQPLEDSKLVRTY--------------- 154

Query: 295 FLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGA 354
            ++            AG C  L  L     S  L+  L  I  ++  D+      I   A
Sbjct: 155 -INELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNE----FIVELA 209

Query: 355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA 408
           L  L   L     +++K      IS+I  G   +  A I       + +L+ + 
Sbjct: 210 LDVLEKALSFPLLENVKI-ELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 36/144 (25%)

Query: 151 LMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALG 210
            M ++   ++ + + AL+ +  +            A    ++ L++ +  IR  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 211 NVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLR-TATWTLSNFCRGMPRPIFEQVRP 269
           N              E A+ PL+  L + +    +R  A  +L     G  R        
Sbjct: 68  NFQ-----------DERAVEPLIKLLEDDS--GFVRSGAARSLEQI--GGER-------- 104

Query: 270 ALPVLAQLVHSNDKEVLTDACWAL 293
               + +L  +        A   L
Sbjct: 105 VRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 34/151 (22%)

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
            +      +A  N  +R     AL              + +EA  PLL  L  +    + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESL-SNEDWRIR 59

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
             A W + NF     R        A+  L +L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF--QDER--------AVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIG 336
            V  A     + +L    +      A+  + 
Sbjct: 104 RVRAA-----MEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 12/68 (17%)

Query: 143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIR 202
            V   ++ L  +D   ++  AA +L  I                     KL  +     R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 203 EQAVWALG 210
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 41/307 (13%), Positives = 98/307 (31%), Gaps = 26/307 (8%)

Query: 123 FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVI 182
              L+ + ++   +  I    +      +  ++  +++  +     ++ S+ +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 183 DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEEALIPLLAQLNEHAK 241
               V + + LL   +  +R   V  L ++      + + ++L     +  L  L   ++
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 242 LSMLRTATWTLSNFCRGMPRPIFEQVRP-ALPVLAQLVH----SNDKEVLTDACWALYFL 296
             +       L    R             A   L  ++     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 297 SNGKNDKIQAVIEAGVCPRLVELLG---------HRSSSVLSPALQTIGHIVAGDDFQT- 346
               N       E     R+               +  + L   LQ +  +V+ ++    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 347 -----QCIINCGALPYLLVLLIHSHK-KSIKNHACWTISKITAGNREQIQ--AVIDAGLI 398
                + +  CG L  L  +L+ +     I      T+S++  G +      A ++A   
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN 359

Query: 399 GPLINLL 405
            P   ++
Sbjct: 360 PPRPAIV 366

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 51.7 bits (123), Expect = 6e-07
 Identities = 36/259 (13%), Positives = 88/259 (33%), Gaps = 26/259 (10%)

Query: 111 DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNI 170
           DD N+ + A    +       +  +E V++      FVE  +  D  + +  A  A  +I
Sbjct: 343 DDWNVSMSAGACLQLFAQNCGNHILEPVLE------FVEQNITADNWRNREAAVMAFGSI 396

Query: 171 ASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALI 230
                +  +    H A+P  + L+   +  ++E   W +G +A       + +  ++ L 
Sbjct: 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLP 453

Query: 231 PLLAQLNEHAKLS--MLRTATWTLSNFCRGMPRPIFEQVRPAL-PVLAQLVHS-----ND 282
            ++       +    +    +WT+ N    +       +      ++  L+ +     N+
Sbjct: 454 GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE 513

Query: 283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGD 342
                 A  AL  +     D +     + +   +++         L   +    + +  +
Sbjct: 514 FNARASAFSALTTMVEYATDTVAETSAS-ISTFVMD--------KLGQTMSVDENQLTLE 564

Query: 343 DFQTQCIINCGALPYLLVL 361
           D Q+   +    L  L  +
Sbjct: 565 DAQSLQELQSNILTVLAAV 583

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 11/154 (7%)

Query: 112 DNNLQLEATTKFRKLLSIE---RSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALT 168
                 EA      L S E        + ++ + V    +E LM ++   LQ      ++
Sbjct: 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELIS 631

Query: 169 NIASKTSEDTKVVIDHG------AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           N+ S          +           I VKLL   + + +        N+A   P     
Sbjct: 632 NMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691

Query: 223 VLSEEALIPLLAQL--NEHAKLSMLRTATWTLSN 254
           +L+++ LI    Q+  ++   + + +        
Sbjct: 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 43/284 (15%), Positives = 88/284 (30%), Gaps = 48/284 (16%)

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
                   L      ++  A+  LG +        ++      L   + +L + +   + 
Sbjct: 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS-----SEMC---RDLAGEVEKLLKTSNSYLR 159

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ 305
           + A     +  R +P    E +   LP    L++  +  VL  +   L  +     D + 
Sbjct: 160 KKAALCAVHVIRKVP----ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215

Query: 306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
                 + P+LV +L +   S  SP            +     I +    P+L V ++  
Sbjct: 216 HFR--KLVPQLVRILKNLIMSGYSP------------EHDVSGISD----PFLQVRILR- 256

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
                       +  +   + +  +A+ D      L  +  N E + KN     +     
Sbjct: 257 -----------LLRILGRNDDDSSEAMND-----ILAQVATNTETS-KNVGNAILYETVL 299

Query: 426 GGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV 469
                + +  +R   I  L   L   +  I  V L  L   ++ 
Sbjct: 300 TIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	559
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.84
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.77
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.76
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.74
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.74
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.73
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.72
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
3grl_A	651	General vesicular transport factor P115; vesicle t	99.69
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.66
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.63
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.62
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.61
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.57
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.57
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.57
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.56
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.54
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.52
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.51
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.43
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.43
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.43
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.42
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.41
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.34
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.21
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.17
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.02
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.97
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.91
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.89
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.88
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.86
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.72
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.68
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.67
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.66
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.65
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.64
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.55
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.5
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.5
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.49
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.47
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.32
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.3
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.26
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.22
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.13
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.1
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.02
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.98
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.97
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.95
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.87
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.76
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.65
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.64
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.58
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.54
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.3
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.26
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.18
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.13
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.13
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.07
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.03
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.85
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.77
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.77
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.74
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.34
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.87
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.86
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.6
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.59
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.47
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.45
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.4
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.28
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.01
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	94.93
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.87
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.66
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.48
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.44
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.33
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.32
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.99
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.93
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.56
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	93.08
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.78
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	87.01
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	85.54
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	83.59
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	83.38
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.72
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	81.42
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	81.06
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	80.93
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	80.42
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	80.13
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	80.11

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.2e-67  Score=557.99  Aligned_cols=481  Identities=42%  Similarity=0.670  Sum_probs=405.8

Q ss_pred             chhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCCCCCccCCCCCCCchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 042204           46 DEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK  125 (559)
Q Consensus        46 ~~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~  125 (559)
                      |.+++|-+..=.+.-.||+||||+++|||++....++..++..............++.+++.++|+|++.++.|+..+|+
T Consensus        23 ~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~d~~~q~~a~~~~rk  102 (529)
T 3tpo_A           23 DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARK  102 (529)
T ss_dssp             ---------------------CCSCSCCCCCC---------------CGGGSSCCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            44556655553455589999999999999975433222111111111111112368999999999999999999999999


Q ss_pred             hccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHH
Q 042204          126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQA  205 (559)
Q Consensus       126 lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a  205 (559)
                      ++|.+.+++++.+++.|+||.|+++|+..+++.+|.+|+|+|+||+.++++++..+++.|++|.|+.+|.+++.+++++|
T Consensus       103 lLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A  182 (529)
T 3tpo_A          103 LLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA  182 (529)
T ss_dssp             HHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            99998899999999999999999999877769999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh----hHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhcc
Q 042204          206 VWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA----KLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHS  280 (559)
Q Consensus       206 ~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~----~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~  280 (559)
                      +|+|+||+.+++.+|+.+.+.|++++|+.++....    ...+++.++|++++++++. +........+++|.|+.++.+
T Consensus       183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~  262 (529)
T 3tpo_A          183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH  262 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC
Confidence            99999999999999999999999999999995332    3457899999999999987 566677778999999999999


Q ss_pred             CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHH
Q 042204          281 NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLV  360 (559)
Q Consensus       281 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~  360 (559)
                      ++++++.+++|+|++++...++..+.+++.|+++.|+.+|.+++..++.+|+++|+|++++++..+..+++.|+++.|+.
T Consensus       263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~  342 (529)
T 3tpo_A          263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS  342 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHH
Confidence            99999999999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Q 042204          361 LLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKC  440 (559)
Q Consensus       361 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  440 (559)
                      +|.++ ++.++++|+|+|+||+++++.+.+.+++.|++|.|+.++.+++.+++++|+|+|+|++.+++++++.++++.|+
T Consensus       343 LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~  421 (529)
T 3tpo_A          343 LLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI  421 (529)
T ss_dssp             HTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence            99999 99999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             hHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHh
Q 042204          441 IKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILET  520 (559)
Q Consensus       441 l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~  520 (559)
                      +++|+++|++.|++++..++++|.+|++.++...       ..+.++.+|+++||+++|+.||+|+|.+||++|..||++
T Consensus       422 i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~  494 (529)
T 3tpo_A          422 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK  494 (529)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887642       567799999999999999999999999999999999999


Q ss_pred             hcCCCCCCC-CCCCC
Q 042204          521 YWCGRVVGP-QPGPQ  534 (559)
Q Consensus       521 ~f~~~~~~~-~~~~~  534 (559)
                      ||+.+++++ .+.|.
T Consensus       495 yf~~~~~~~~~~~~~  509 (529)
T 3tpo_A          495 YFSVEEEEDQNVVPE  509 (529)
T ss_dssp             HC-------------
T ss_pred             HCCCccccccccCCC
Confidence            999765544 45554

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.2e-63  Score=524.27  Aligned_cols=427  Identities=45%  Similarity=0.765  Sum_probs=394.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.+|+.++|+|++.|+.|+..+|+++|.+.+|+++.+++.|+||.|+++|++.+++.+|++|+|+|+||++++++++.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            58999999999999999999999999999988999999999999999999998776699999999999999999999999


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh----hHhHHHHHHHHHHHh
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA----KLSMLRTATWTLSNF  255 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~----~~~~~~~a~~~L~nL  255 (559)
                      .+++.|++|.|+.+|.+++.+++++|+|+|+||+.+++.+|+.+.+.|++++|+.++....    ...+++.++|+++++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995332    345788999999999


Q ss_pred             hcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 042204          256 CRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQT  334 (559)
Q Consensus       256 ~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  334 (559)
                      +++. +........+++|.|+.++.+++++++..++|+|++|+...++..+.+.+.|+++.|+.+|.+++..++.+++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9987 566667778999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHH
Q 042204          335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKN  414 (559)
Q Consensus       335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~  414 (559)
                      |+|++++++..+..+++.|+++.|+.+|.++ ++.++++|+|+|+||+++++++++.+++.|+++.|+.++.++++++++
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhc
Q 042204          415 WAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAE  494 (559)
Q Consensus       415 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g  494 (559)
                      +|+|+|.|++.+++++++.++++.|++++|+++|+.+|++++..++++|.+|++.+++..       ..+.++.+|+++|
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~g  449 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECG  449 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcC
Confidence            999999999999899999999999999999999999999999999999999999887642       5677999999999


Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC-CCCCC
Q 042204          495 GLEKIENLQSHENNEIHEKSVKILETYWCGRVVGP-QPGPQ  534 (559)
Q Consensus       495 ~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~~~-~~~~~  534 (559)
                      |+++|+.||+|+|.+||++|..||++||+.+++++ .+.|.
T Consensus       450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~  490 (510)
T 3ul1_B          450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPE  490 (510)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHCC------------
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCC
Confidence            99999999999999999999999999999766544 45553

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.7e-56  Score=475.34  Aligned_cols=480  Identities=71%  Similarity=1.086  Sum_probs=402.4

Q ss_pred             chhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCCCCCccCCCCCCCchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 042204           46 DEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRK  125 (559)
Q Consensus        46 ~~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~  125 (559)
                      +.++++.+..=.+.-.||+||||+++|||++....+..++.  ............+|.+++.|.++++..+..|++.|++
T Consensus        23 ~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~A~~~L~~  100 (528)
T 4b8j_A           23 DAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPA--SAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRK  100 (528)
T ss_dssp             ----CCCCC-----------------CCCC------------------------CHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccccccc--ccccchhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            44555655554555689999999999999974322221100  0001111223568999999999999999999999999


Q ss_pred             hccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHH
Q 042204          126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQA  205 (559)
Q Consensus       126 lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a  205 (559)
                      +++...++++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.+++.|
T Consensus       101 l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a  180 (528)
T 4b8j_A          101 LLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA  180 (528)
T ss_dssp             HHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             HhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHH
Confidence            98887568899999999999999999987668999999999999999889999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhH
Q 042204          206 VWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEV  285 (559)
Q Consensus       206 ~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v  285 (559)
                      +|+|+||+.+.+.+++.+...|++++|+.++..+.+..+++.++|+|++|+...+........+++|.|+.++.+.++.+
T Consensus       181 ~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v  260 (528)
T 4b8j_A          181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV  260 (528)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHH
Confidence            99999999998999999999999999999997777889999999999999998877777788999999999999999999


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCC
Q 042204          286 LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS  365 (559)
Q Consensus       286 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~  365 (559)
                      +..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+++.|+++.|+.+|.++
T Consensus       261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~  340 (528)
T 4b8j_A          261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN  340 (528)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence            99999999999998888888999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 042204          366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC  445 (559)
Q Consensus       366 ~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  445 (559)
                      .++.++++|+|+|+|++.++++.++.+++.|+++.|+.+|.+++++++..|+|+|.|++..++++...++++.|+++.|+
T Consensus       341 ~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~  420 (528)
T 4b8j_A          341 LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLC  420 (528)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             hcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCC
Q 042204          446 DLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGR  525 (559)
Q Consensus       446 ~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~  525 (559)
                      .+|...+++++..++++|.+++..++.......  ...++++..++++|++++|+.|++|+|++|+++|.+++++||+.+
T Consensus       421 ~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          421 DLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999988766432110  135679999999999999999999999999999999999999987


Q ss_pred             CCCC
Q 042204          526 VVGP  529 (559)
Q Consensus       526 ~~~~  529 (559)
                      ++++
T Consensus       499 ~~~~  502 (528)
T 4b8j_A          499 EDDT  502 (528)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7665

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=9.6e-54  Score=455.62  Aligned_cols=479  Identities=49%  Similarity=0.746  Sum_probs=415.4

Q ss_pred             chhhhhhhcchhhhHHHHhhhHHHHHhhhcCCCC---CCCccCCCC--CCCchhh-hhHHHHHHHHHHhcCCCHHHHHHH
Q 042204           46 DEACWAWKEGLNTTIEQVNLKKESFLRKRREAPP---SQQFLSFAP--APNLNLQ-TRLEIFAAMVAGVWSDDNNLQLEA  119 (559)
Q Consensus        46 ~~~~~~~~~dl~~~~~~k~~r~~~l~k~R~~~~~---~~~~~~~~~--~~~~~~~-~~~~~l~~lv~~L~s~~~~~~~~a  119 (559)
                      +.++.+.+-.-++.-.||+||++++.|||++...   .+..+....  ......+ ...+.++.+++.|+++++..+..|
T Consensus        28 ~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~~~~~~~~A  107 (530)
T 1wa5_B           28 SADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSA  107 (530)
T ss_dssp             ---CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHHHHHSCSSHHHHHHH
T ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHHHHHcCCCHHHHHHH
Confidence            4455666666677789999999999999998542   111000000  0001111 112468999999999999999999


Q ss_pred             HHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCH
Q 042204          120 TTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPND  199 (559)
Q Consensus       120 ~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~  199 (559)
                      +..|+++++....+++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++
T Consensus       108 ~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~  187 (530)
T 1wa5_B          108 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV  187 (530)
T ss_dssp             HHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH
T ss_pred             HHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence            99999998876567888999999999999999997339999999999999999889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhh
Q 042204          200 DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLV  278 (559)
Q Consensus       200 ~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL  278 (559)
                      .+++.|+|+|++++.+.+..++.+...|++++|+.++ .+.+..++..++|+|++|+.+. +........+++|.|+.++
T Consensus       188 ~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL  266 (530)
T 1wa5_B          188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI  266 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH
Confidence            9999999999999999888999999999999999999 4578899999999999999987 6666777799999999999


Q ss_pred             ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHH
Q 042204          279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYL  358 (559)
Q Consensus       279 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L  358 (559)
                      .++++.++..++|+|++++...++..+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.|+++.|
T Consensus       267 ~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  346 (530)
T 1wa5_B          267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL  346 (530)
T ss_dssp             TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHH
Confidence            99999999999999999998888888889999999999999999999999999999999999998888889999999999


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCH--HHHHHHH
Q 042204          359 LVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSH--EQIKYLV  436 (559)
Q Consensus       359 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~--~~~~~l~  436 (559)
                      +.+|.++ ++.+++.|+|+|+|++.++++.++.+++.|+++.|+.+|.+++++++..|+|+|.+++..+++  +...+++
T Consensus       347 ~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~  425 (530)
T 1wa5_B          347 RLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLV  425 (530)
T ss_dssp             HHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred             HHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            9999999 999999999999999998899999999999999999999999999999999999999987766  8888999


Q ss_pred             HcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 042204          437 REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVK  516 (559)
Q Consensus       437 ~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~  516 (559)
                      +.|+++.|+.++...++.++..++++|.+++..++......  ....++++..++++||+++|+.|++|++++|+++|..
T Consensus       426 ~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~  503 (530)
T 1wa5_B          426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK  503 (530)
T ss_dssp             HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence            99999999999999999999999999999998876532100  0134678999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCC
Q 042204          517 ILETYWCGRVVG  528 (559)
Q Consensus       517 il~~~f~~~~~~  528 (559)
                      +|++||..++++
T Consensus       504 il~~~~~~~~~~  515 (530)
T 1wa5_B          504 IIETYFGEEEDA  515 (530)
T ss_dssp             HHHHHSSSCC--
T ss_pred             HHHHHCCccccc
Confidence            999999987764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.1e-47  Score=398.44  Aligned_cols=427  Identities=57%  Similarity=0.900  Sum_probs=386.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhc-CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .++.+++.++++++..+..|+..|+++++...+++...+++. |++|.|+++|++++++.+|..|+++|++++.++++.+
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            478999999999999999999999999875446677888888 9999999999998349999999999999999888999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.++.++..+.+..++..++|+|.+++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999998888999999999999999996557889999999999999987


Q ss_pred             C-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          259 M-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       259 ~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      . +........+++|.|+.++.++++.++..++|+|++++...++..+.+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            6 555556668999999999999999999999999999998877777888899999999999999999999999999999


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA  417 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~  417 (559)
                      ++.+.+...+.+++.|+++.|+.+|.++ ++.+|+.|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9999988888889999999999999998 999999999999999998999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHH
Q 042204          418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLE  497 (559)
Q Consensus       418 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~  497 (559)
                      |+|+|++..++++...++++.|+++.|+.++...+++++..++++|.+++..++......  ....++++..+.++||++
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~  417 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN--GTGINPYCALIEEAYGLD  417 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS--CSCCCHHHHHHHHHHCHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc--ccchhHHHHHHHHcCcHH
Confidence            999999987778888989999999999999999999999999999999998776532110  013457899999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhcCCCCCCC
Q 042204          498 KIENLQSHENNEIHEKSVKILETYWCGRVVGP  529 (559)
Q Consensus       498 ~l~~L~~~~~~~v~~~a~~il~~~f~~~~~~~  529 (559)
                      +|..|++|++.+|+++|..+|++||+.+++++
T Consensus       418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  449 (450)
T 2jdq_A          418 KIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS  449 (450)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence            99999999999999999999999998776654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.1e-41  Score=345.11  Aligned_cols=366  Identities=18%  Similarity=0.187  Sum_probs=296.7

Q ss_pred             hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCc-hHHHHHhcCcHHHHHHhhcCCCC-----------HHHHHHH
Q 042204           96 TRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSP-PIEEVIQSGVVPRFVEFLMREDY-----------PQLQYEA  163 (559)
Q Consensus        96 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~-~~~~ii~~g~v~~Lv~lL~~~~~-----------~~~~~~a  163 (559)
                      ..++.++.++..+.+.|.+.      .++++++.+.++ .+..+++.|++|.|+++|...+.           ++++++|
T Consensus        29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a  102 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA  102 (458)
T ss_dssp             ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence            44567899999999888773      344444433344 45889999999999999997543           7999999


Q ss_pred             HHHHHHHhcCCchhHHHHHhCCCH----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHHhCCCchh
Q 042204          164 AWALTNIASKTSEDTKVVIDHGAV----------PIFVKLLASPN--DD-----IRE-------QAVWALGNVAGDSPRC  219 (559)
Q Consensus       164 ~~~L~nl~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~  219 (559)
                      +|+|+||+.++++.++...+.|++          +.+++++.++.  .+     +++       +|+|+|+|++.+ +++
T Consensus       103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~  181 (458)
T 3nmz_A          103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH  181 (458)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence            999999999999999999999988          77777787642  22     555       999999999776 889


Q ss_pred             hhhhhccCCHHHHHHHhch----------hhhHhHHHHHHHHHHHhhcCCCCCcHhh--HhchHHHHHHhhccCCHhHHH
Q 042204          220 RDLVLSEEALIPLLAQLNE----------HAKLSMLRTATWTLSNFCRGMPRPIFEQ--VRPALPVLAQLVHSNDKEVLT  287 (559)
Q Consensus       220 r~~i~~~g~l~~Ll~ll~~----------~~~~~~~~~a~~~L~nL~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~  287 (559)
                      |+.+.+.|++++|+.+|..          ..++.+++.|+|+|.||+.+.+......  ..+++|.|+.+|.+++++++.
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~  261 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ  261 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence            9999999999999999942          2457789999999999999874333333  356799999999999999999


Q ss_pred             HHHHHHHHhccC-ChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcCChHHHHHHH-hCCChHHHHHHhcC
Q 042204          288 DACWALYFLSNG-KNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQTIGHIVAGDDFQTQCII-NCGALPYLLVLLIH  364 (559)
Q Consensus       288 ~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~g~l~~L~~lL~~  364 (559)
                      .|+|+|+||+.. +++..+.+.+.|+++.|+++| .+.+..++..|+++|+||+.+++.....+. ..|+++.|+.+|.+
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999975 566778899999999999975 556778999999999999995544444454 78999999999987


Q ss_pred             CCch----hHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204          365 SHKK----SIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR  437 (559)
Q Consensus       365 ~~~~----~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  437 (559)
                      . +.    .+++.|+|+|.|++.   +++++++.+++.|+++.|+.+|.+++.+++++|+|+|.|++.. ++++...+++
T Consensus       342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~  419 (458)
T 3nmz_A          342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD  419 (458)
T ss_dssp             C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHH
T ss_pred             C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence            7 43    499999999999996   7899999999999999999999999999999999999999975 7889999999


Q ss_pred             cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          438 EKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       438 ~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      .|++++|+++|.+.++.++..++++|.+++...
T Consensus       420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=8.8e-41  Score=360.07  Aligned_cols=368  Identities=15%  Similarity=0.146  Sum_probs=321.0

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204           99 EIFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS  175 (559)
Q Consensus        99 ~~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~  175 (559)
                      ..++.+++.|.++  |.+.+..|++.|..+ +.. .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.+++
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayL-S~~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYL-TLD-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHH-TTS-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-hCC-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence            3578899999988  889999999999997 433 45555555 6899999999999988 8999999999999998653


Q ss_pred             h-----------------------------hH---HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh
Q 042204          176 E-----------------------------DT---KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV  223 (559)
Q Consensus       176 ~-----------------------------~~---~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  223 (559)
                      +                             .+   +.+++.|++|.|+.+|.++++.++++|+|+|+||+++ +.+|+.+
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~V  532 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKV  532 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            1                             22   7889999999999999999999999999999999976 5589999


Q ss_pred             hccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcH--hhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccC
Q 042204          224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIF--EQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNG  299 (559)
Q Consensus       224 ~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~--~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~  299 (559)
                      .+.|++++|+.++ .+.+...++.|+|+|++|+... |...+  ....+++|.|+.+|.++ +...+..|+|+|+||+..
T Consensus       533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~  611 (810)
T 3now_A          533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM  611 (810)
T ss_dssp             HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence            9999999999999 5556788999999999999764 22111  12356899999999865 344567899999999998


Q ss_pred             ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHH
Q 042204          300 KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTIS  379 (559)
Q Consensus       300 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  379 (559)
                      +++..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++.+.+.+...|.++.|+.++.++ +..+|++|+|+|+
T Consensus       612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa  690 (810)
T 3now_A          612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALA  690 (810)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence            888888999999999999999999999999999999999998776655442379999999999998 9999999999999


Q ss_pred             HhhcCCHHHHHHHHH-cCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC---ChHH
Q 042204          380 KITAGNREQIQAVID-AGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA---NPTI  455 (559)
Q Consensus       380 nl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---d~~v  455 (559)
                      |++.+++.+++.+++ .|+++.|+++|.+++.++++.|+|+|.|++.+ ++++..++++.|++++|+.+++..   ++++
T Consensus       691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i  769 (810)
T 3now_A          691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKA  769 (810)
T ss_dssp             HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred             HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence            999988999999998 89999999999999999999999999999985 678899999999999999999655   7899


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 042204          456 VTVCLKGLENILKVGEAE  473 (559)
Q Consensus       456 ~~~~l~~l~~il~~~~~~  473 (559)
                      ++.++++|.++++.+...
T Consensus       770 ~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          770 REVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhCCCcc
Confidence            999999999999887653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4.3e-40  Score=342.21  Aligned_cols=365  Identities=19%  Similarity=0.211  Sum_probs=311.6

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL  222 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  222 (559)
                      .+|.|+++|++++ +++|..|+++|.+++.+++..+..+++.|++|.|+.+|+++++.+++.|+|+|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999998 899999999999999878888889999999999999999999999999999999999988889999


Q ss_pred             hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc--------c--------CCHhHH
Q 042204          223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH--------S--------NDKEVL  286 (559)
Q Consensus       223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--------~--------~d~~v~  286 (559)
                      +.+.|++++|+.+|..+.+.++++.++|+|+||+... ........+++|.|+.++.        +        .++.++
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            9999999999999964778899999999999999984 4444333499999999993        2        356778


Q ss_pred             HHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcC------------------
Q 042204          287 TDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH------RSSSVLSPALQTIGHIVAG------------------  341 (559)
Q Consensus       287 ~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~------------------  341 (559)
                      ..|+|+|+||+.. ++..+.+.+. |+++.|+.+|.+      .+..++..|+.+|.|++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999976 6777888887 999999999985      4667888999999998631                  


Q ss_pred             --------------------------------ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH--
Q 042204          342 --------------------------------DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE--  387 (559)
Q Consensus       342 --------------------------------~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  387 (559)
                                                      .+...+.+++.|+++.|+.+|.+..++.+++.|+|+|+|+++++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1112334566788999999998765789999999999999986432  


Q ss_pred             -HH-HHHH-HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh------HHHHH
Q 042204          388 -QI-QAVI-DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP------TIVTV  458 (559)
Q Consensus       388 -~~-~~li-~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~------~v~~~  458 (559)
                       .+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++.+   .....++..|++++|+++|...++      +++..
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             33 4455 689999999999999999999999999999985   244566777899999999987653      68889


Q ss_pred             HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHhhcCCCC
Q 042204          459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE-NNEIHEKSVKILETYWCGRV  526 (559)
Q Consensus       459 ~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~f~~~~  526 (559)
                      ++++|.+++..+             ..++..+.++||+++|.+|+.|. ++++|++|.++|++||...+
T Consensus       397 ~l~~l~ni~~~~-------------~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQ-------------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTC-------------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcC-------------HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            999999998432             34688899999999999999999 99999999999999998665

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=8.3e-39  Score=339.55  Aligned_cols=368  Identities=26%  Similarity=0.389  Sum_probs=327.1

Q ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204           98 LEIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        98 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      .|.+|.|++.|.. +++.+|..|+++|.++.++. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence            4789999999974 56899999999999988764 567788999999999999999999 99999999999999998899


Q ss_pred             hHHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204          177 DTKVVIDHGAVPIFVKLLASPN-----DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT  251 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~  251 (559)
                      .+..+++.|+++.|+.+|..++     ..+.+.++|+|++++.............++++.|+.++ .+.+..++..++|+
T Consensus       196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a  274 (529)
T 3tpo_A          196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  274 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            9999999999999999998644     45788999999999987655555555567889999998 67788999999999


Q ss_pred             HHHhhcCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh
Q 042204          252 LSNFCRGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP  330 (559)
Q Consensus       252 L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~  330 (559)
                      |++++.+.+... .....+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence            999998763322 2334789999999999999999999999999999989888889999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCC
Q 042204          331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAE  409 (559)
Q Consensus       331 al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~  409 (559)
                      |+|+|+|++.++..+.+.+++.|+++.|+.+|.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|...|
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999 99999999999999987 68899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcC----CCHH-HHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          410 INIKNWAAWAISNATSG----GSHE-QIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       410 ~~v~~~a~~aL~nl~~~----~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ++++..++++|.|+...    +..+ ....+.+.|+++.|..|..+++.++...|..+|.+++..
T Consensus       434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  498 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            99999999999999752    2333 344566789999999999999999999999999998854

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4.2e-39  Score=339.87  Aligned_cols=369  Identities=26%  Similarity=0.384  Sum_probs=326.6

Q ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204           98 LEIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        98 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      .|.+|.|++.|++ +++.+|+.|+++|.++.++. .+....+++.|++|.|+++|++++ ++++..|+|+|+||+.++++
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~  176 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  176 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            3789999999975 55899999999999998764 677889999999999999999998 99999999999999998899


Q ss_pred             hHHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204          177 DTKVVIDHGAVPIFVKLLASPN-----DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT  251 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~  251 (559)
                      .+..+++.|+++.|+.+|.+++     ..+.+.++|+|+|++.............++++.|+.++ .+.+.+++..++|+
T Consensus       177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~a  255 (510)
T 3ul1_B          177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  255 (510)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHH
Confidence            9999999999999999998754     45678999999999987655455555567889999998 67788999999999


Q ss_pred             HHHhhcCCCCCcH-hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh
Q 042204          252 LSNFCRGMPRPIF-EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSP  330 (559)
Q Consensus       252 L~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~  330 (559)
                      |++|+...+.... ....+++|.|+.++.+.+..++..++++|++++..++...+.+++.|+++.|+.+|.+++..++..
T Consensus       256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~  335 (510)
T 3ul1_B          256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  335 (510)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred             HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence            9999987533222 234789999999999999999999999999999999988889999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCC
Q 042204          331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAE  409 (559)
Q Consensus       331 al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~  409 (559)
                      |+|+|+|++.++..+.+.+++.|+++.|+.+|.+. +..+|++|+|+|+|++. ++.+++..+++.|+++.|+++|...|
T Consensus       336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d  414 (510)
T 3ul1_B          336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  414 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999 99999999999999997 68899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcC----CCHH-HHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          410 INIKNWAAWAISNATSG----GSHE-QIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       410 ~~v~~~a~~aL~nl~~~----~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      ++++..++++|.|+...    +..+ ....+.+.|+++.|..+..+++.++...+...|.+++..+
T Consensus       415 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            99999999999999752    2233 3445567899999999999999999999999999988543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.2e-37  Score=331.60  Aligned_cols=402  Identities=16%  Similarity=0.167  Sum_probs=341.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.+|.+++.|+++++..+..|++.|.++.... ......+.+.|++|.|+++|++++ ++++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            68999999999999999999999999987763 566778889999999999999988 8999999999999999889999


Q ss_pred             HHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          179 KVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      ..+++.|+++.|+.+|.+. ....+..++.+|.+++. .+..+..+.+.|++++|+.++ .+.+..+++.++|+|.+++.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999864 45677788999999986 456788888999999999999 55578899999999999998


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTI  335 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L  335 (559)
                      ..+..  ....+++|.|+.++.+++++++..++|+|++++..+++..+.+.+.|+++.|+++|.+.  ++.++..|+++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            86432  23468999999999999999999999999999988887888999999999999999763  368999999999


Q ss_pred             HHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhH
Q 042204          336 GHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINI  412 (559)
Q Consensus       336 ~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v  412 (559)
                      +|++.+++.   ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.++. ..+.+++.|+++.|++++.++++++
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v  413 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHH
Confidence            999986532   345788899999999999988346999999999999987644 4478889999999999999988999


Q ss_pred             HHHHHHHHHH--HhcCC------------------CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204          413 KNWAAWAISN--ATSGG------------------SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       413 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~  472 (559)
                      |++|+|++.|  +..++                  .++....+.+.|+++.|+.++.+.++.++..+.++|.++..    
T Consensus       414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~----  489 (529)
T 1jdh_A          414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ----  489 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT----
T ss_pred             HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc----
Confidence            9988888777  22221                  34555678899999999999999999999999999999762    


Q ss_pred             hcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          473 EKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       473 ~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                                .++++..+.+.|+++.|+.|++|+|++|+++|.++++++
T Consensus       490 ----------~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          490 ----------DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             ----------SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                      234688899999999999999999999999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=336.21  Aligned_cols=405  Identities=17%  Similarity=0.172  Sum_probs=347.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.++.+++.|+++++..+..|++.|.++.+.. ......+++.|++|.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            68999999999999999999999999987764 567788889999999999999988 8999999999999998889999


Q ss_pred             HHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          179 KVVIDHGAVPIFVKLLASP-NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      ..+++.|+++.|+.+|.+. ...++..++.+|.|++. .+..|..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999875 46788899999999986 456788899999999999999 45578999999999999998


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC--CcchhhHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS--SSVLSPALQTI  335 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L  335 (559)
                      ..+..  ....+++|.|+.++.+.+++++..++|+|++|+..+++..+.+.+.|+++.|+.+|.+.+  +.++..|+++|
T Consensus       254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            76332  334689999999999999999999999999999888888888999999999999998743  68999999999


Q ss_pred             HHhhcCCh--HHH-HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhH
Q 042204          336 GHIVAGDD--FQT-QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINI  412 (559)
Q Consensus       336 ~nl~~~~~--~~~-~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v  412 (559)
                      +|++....  ... ..+++.|+++.|+.+|.++.++.++++|+|+|+|++.+... .+.+++.|+++.|+++|.++++++
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v  410 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT  410 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence            99997543  233 34778899999999999873479999999999999876444 488889999999999998765555


Q ss_pred             HH----------------------HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          413 KN----------------------WAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       413 ~~----------------------~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      |+                      .++.+|.+++.  ++.....+.+.|+++.|+.+|.+.++.++..++++|.++... 
T Consensus       411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-  487 (644)
T 2z6h_A          411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-  487 (644)
T ss_dssp             TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            54                      45555555554  335556778999999999999999999999999999998732 


Q ss_pred             hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHH------------------HHH--HHHHHHhhcCCCC
Q 042204          471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEI------------------HEK--SVKILETYWCGRV  526 (559)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v------------------~~~--a~~il~~~f~~~~  526 (559)
                                   ++++..++++|+++.|..|++++|++|                  |++  +..+++.||..++
T Consensus       488 -------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~  550 (644)
T 2z6h_A          488 -------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  550 (644)
T ss_dssp             -------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred             -------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence                         336888999999999999999999999                  544  6778999998764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.3e-38  Score=329.28  Aligned_cols=361  Identities=16%  Similarity=0.165  Sum_probs=305.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+|.+++.|++++++.|..|++.|+++... +.+....+++.|++|.|+++|++++ +.++..|+|+|+||+.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            478999999999999999999999997654 2455668999999999999999988 99999999999999998899999


Q ss_pred             HHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch--------h-------hhHh
Q 042204          180 VVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE--------H-------AKLS  243 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~--------~-------~~~~  243 (559)
                      .+++.|++|.|+++|. ++++++++.|+|+|+|++.+ +..|..+.+ |++++|+.++..        .       .+..
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88999999999999999988 678888888 999999999931        1       2467


Q ss_pred             HHHHHHHHHHHhhcCCCCCcHhhH-h-chHHHHHHhhcc------CCHhHHHHHHHHHHHhccCC---------------
Q 042204          244 MLRTATWTLSNFCRGMPRPIFEQV-R-PALPVLAQLVHS------NDKEVLTDACWALYFLSNGK---------------  300 (559)
Q Consensus       244 ~~~~a~~~L~nL~~~~~~~~~~~~-~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~---------------  300 (559)
                      ++++++|+|+||+.+ +....... . |++|.|+.++++      .+..++.+++++|.+++...               
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            788999999999987 33333333 3 899999999985      46678899999999987321               


Q ss_pred             -----------------------------------hhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChH
Q 042204          301 -----------------------------------NDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       301 -----------------------------------~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~  344 (559)
                                                         +...+.+++.|+++.|+.+|.+. ++.+++.|+|+|+|++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               11223455667889999999764 578999999999999987654


Q ss_pred             H---H-HHHH-hCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCCh------hHH
Q 042204          345 Q---T-QCII-NCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEI------NIK  413 (559)
Q Consensus       345 ~---~-~~~~-~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~------~v~  413 (559)
                      .   . +.++ +.|+++.|+.+|.++ +..++++|+|+|+|++.+  ...+.++..++++.|+++|..+++      ++.
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~  394 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence            2   2 3334 689999999999999 999999999999999875  345677777899999999998743      688


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHh
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKV  469 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~  469 (559)
                      ..++++|.|+..+ ++++...+.+.|+++.|++++.+. +.+++..|.+.|.+++..
T Consensus       395 ~~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence            8999999999976 567888889999999999999998 899999999999998743

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.7e-36  Score=324.15  Aligned_cols=405  Identities=16%  Similarity=0.141  Sum_probs=336.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc-hh
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS-ED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~-~~  177 (559)
                      +.++.++..+.+++...+..|++.+.++.+.  ...++.+++.|+ |.|+.++++++ +.+|..|+++|++++.... +.
T Consensus       290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~d~  365 (810)
T 3now_A          290 GILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQDA  365 (810)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTTTT
T ss_pred             chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhccccccCc
Confidence            7899999999999999999999999997554  678889999886 99999999887 8999999999999986321 22


Q ss_pred             HHHHHhCCC----HHHHHHhhCCC--CHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204          178 TKVVIDHGA----VPIFVKLLASP--NDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWT  251 (559)
Q Consensus       178 ~~~i~~~g~----i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~  251 (559)
                      ....++.|.    ++.|+++|.++  ++++++.|+|+|.+++.+.......+.+.|+++.|+.++ .+.+..++..++|+
T Consensus       366 ~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~  444 (810)
T 3now_A          366 AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVTT  444 (810)
T ss_dssp             SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHHH
T ss_pred             cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHHH
Confidence            223333343    66788888887  899999999999999877655455555789999999999 56788999999999


Q ss_pred             HHHhhcCCCCC---------------------------------cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204          252 LSNFCRGMPRP---------------------------------IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN  298 (559)
Q Consensus       252 L~nL~~~~~~~---------------------------------~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  298 (559)
                      |.||+.+.+..                                 ......|++|.|+.++.++++.++..|+|+|+|++.
T Consensus       445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~  524 (810)
T 3now_A          445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG  524 (810)
T ss_dssp             HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            99999864211                                 122236899999999999999999999999999994


Q ss_pred             CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHH--HHhCCChHHHHHHhcCCCchhHHHHHHH
Q 042204          299 GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQC--IINCGALPYLLVLLIHSHKKSIKNHACW  376 (559)
Q Consensus       299 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~--~~~~g~l~~L~~lL~~~~~~~v~~~a~~  376 (559)
                       +++....+++.|+++.|+.+|.++++..+..|+|+|+|++.+.+.....  ....+++++|+.+|.++.+...+.+|+|
T Consensus       525 -d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~  603 (810)
T 3now_A          525 -LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM  603 (810)
T ss_dssp             -SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred             -CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence             5667788999999999999999999999999999999998754322100  0113689999999986523345679999


Q ss_pred             HHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhcCCCCChHH
Q 042204          377 TISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR-EKCIKPLCDLLPCANPTI  455 (559)
Q Consensus       377 ~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v  455 (559)
                      +|+|++.++++..+.+++.|+++.|+.+|.++++.+++.|+++|+|++.+  ++....+++ .|.++.|+.++.+.+..+
T Consensus       604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~v  681 (810)
T 3now_A          604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEET  681 (810)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred             HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHHH
Confidence            99999998888999999999999999999999999999999999999984  456666665 689999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHH-hccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204          456 VTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE-AEGLEKIENLQSHENNEIHEKSVKILETYWCG  524 (559)
Q Consensus       456 ~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~-~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~  524 (559)
                      +..+.++|.++....+.             ..+.+.+ .|+++.|..|..+++.++++.|.+++.+....
T Consensus       682 q~~Aa~ALanLt~~s~~-------------~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          682 ATACAGALAIITSVSVK-------------CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHHHHHHHCHH-------------HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCHH-------------HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            99999999998853221             2344444 89999999999999999999999999988653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.5e-36  Score=314.59  Aligned_cols=366  Identities=25%  Similarity=0.319  Sum_probs=324.7

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.++.+++.|+++ ++..+..|++.|.++.+.. .+....+++.|++|.|+++|++++ +.++..|+|+|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            5799999999998 8999999999999987753 456777889999999999999988 999999999999999988889


Q ss_pred             HHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          178 TKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                      +..+++.|+++.|+.++.+ .+..++..|+|+|++++... +..+..+. .++++.|+.++ .+.+..++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999995 78999999999999999765 44333333 78899999999 566789999999999999


Q ss_pred             hcCCCC-CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 042204          256 CRGMPR-PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQT  334 (559)
Q Consensus       256 ~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  334 (559)
                      +...+. .......+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            987532 2223346899999999999999999999999999998888887888999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      |++++.+++...+.+++.|+++.|+.+|.++ ++.+|+.|+|+|+|++.+ +++.++.+++.|+++.|++++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888899999999999999998 999999999999999974 78889999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          414 NWAAWAISNATSGGSH----------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ..|+++|.+++..+..          .....+.+.|+++.|..++.+++.+++..++.+|.+++..
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            9999999999975332          2345677889999999999999999999999999999843

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=7.1e-36  Score=317.77  Aligned_cols=369  Identities=25%  Similarity=0.336  Sum_probs=327.6

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.+|.+++.|.++ ++.++..|++.|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++..+++.
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            6799999999997 8999999999999987653 556788889999999999999888 999999999999999988899


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..++..|+++.|+.++.+.++.++..|+|+|++++.............++++.|+.++ .+.+..++..++|+|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999976522234455678999999999 56678999999999999998


Q ss_pred             CCCCCcHh-hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204          258 GMPRPIFE-QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG  336 (559)
Q Consensus       258 ~~~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  336 (559)
                      ..+..... ...+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            75322222 23589999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCH--HHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          337 HIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNR--EQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      +++.++....+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++. +++  +..+.+++.|+++.|+.++.+++++++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99998888888889999999999999988 99999999999999987 455  788899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204          414 NWAAWAISNATSGGSH----------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE  471 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~  471 (559)
                      ..|+++|.+++..+..          .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus       446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999875322          245667889999999999999999999999999999886543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.7e-36  Score=316.49  Aligned_cols=363  Identities=17%  Similarity=0.153  Sum_probs=302.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Cchh
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASK-TSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~-~~~~  177 (559)
                      ..++.+|+.|.+++++.|..|++.|+++.... .+++..+++.|+||.|+++|++++ +.+|+.|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            36899999999999999999999999986543 778999999999999999999988 99999999999999996 6899


Q ss_pred             HHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc-----------------hh
Q 042204          178 TKVVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN-----------------EH  239 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~-----------------~~  239 (559)
                      +..+++.|+||.|+.+|.+ .+.+++++++++|+|++.. +..+..+.+ +++++|+.++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 6889999999999999974 566777775 57999999872                 11


Q ss_pred             hhHhHHHHHHHHHHHhhcCCCCCcHhhH--hchHHHHHHhhcc------CCHhHHHHHHHHHHHhccCChh---------
Q 042204          240 AKLSMLRTATWTLSNFCRGMPRPIFEQV--RPALPVLAQLVHS------NDKEVLTDACWALYFLSNGKND---------  302 (559)
Q Consensus       240 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~--~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~~~---------  302 (559)
                      .+..++++++|+|.||+...+.....+.  .++++.|+.++++      .+...+++|+|+|.||+.....         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            2468999999999999987643233332  5778899999874      4678999999999999965211         


Q ss_pred             ----------------HHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChHH----HHHHHhCCChHHHHHH
Q 042204          303 ----------------KIQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAGDDFQ----TQCIINCGALPYLLVL  361 (559)
Q Consensus       303 ----------------~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~----~~~~~~~g~l~~L~~l  361 (559)
                                      .++.+.+.++++.|+.+|. +.++.+++.|+++|.|++.+....    ...+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                            1112233456788899996 457889999999999999876322    2234456899999999


Q ss_pred             hcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--------ChhHHHHHHHHHHHHhcCCCHHHHH
Q 042204          362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--------EINIKNWAAWAISNATSGGSHEQIK  433 (559)
Q Consensus       362 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~  433 (559)
                      |.++ +..+++.|+|+|+|++.+..  .+.++..|+++.|+.+|.++        ..+++..|+++|.|++.. ++++..
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999 99999999999999997543  34566788999999999876        357899999999999976 789999


Q ss_pred             HHHHcCChHHHHhcCCCC--ChHHHHHHHHHHHHHHHh
Q 042204          434 YLVREKCIKPLCDLLPCA--NPTIVTVCLKGLENILKV  469 (559)
Q Consensus       434 ~l~~~~~l~~L~~lL~~~--d~~v~~~~l~~l~~il~~  469 (559)
                      .+.+.|+++.|+.++.+.  .+.+++.|.++|.++...
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            999999999999999876  789999999999998843

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=6.8e-36  Score=317.92  Aligned_cols=367  Identities=26%  Similarity=0.348  Sum_probs=328.1

Q ss_pred             HHHHHHHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.+|.+++.|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++|+..++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            67999999999887 999999999999987653 567888899999999999999988 999999999999999988889


Q ss_pred             HHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhh
Q 042204          178 TKVVIDHGAVPIFVKLL-ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC  256 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~  256 (559)
                      +..+++.|+++.|+.+| .+.++.++..|+|+|++++...+.. ......++++.|+.++ .+.+..++..++|+|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 6789999999999999999876543 3344578999999999 6678899999999999999


Q ss_pred             cCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHH
Q 042204          257 RGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQT  334 (559)
Q Consensus       257 ~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~  334 (559)
                      .+.+... .....+++|.|+.+|.+.++.++..|+++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            7753222 233468999999999999999999999999999998888888899999999999999998 89999999999


Q ss_pred             HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      |+|++.+++...+.+++.|+++.|+.+|.+. ++.++.+|+|+|+|++.+ +++....+++.|+++.|+.+|..++++++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            9999998888888899999999999999998 999999999999999984 78999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          414 NWAAWAISNATSGGSH----------EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      ..++++|.+++..+..          .....+.+.|+++.|..+..+.++++...+..++.+++...
T Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            9999999999875322          24667778999999999999999999999999999988543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.1e-35  Score=310.43  Aligned_cols=368  Identities=18%  Similarity=0.223  Sum_probs=305.3

Q ss_pred             hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCC-Cch
Q 042204          140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGD-SPR  218 (559)
Q Consensus       140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~  218 (559)
                      ..+.+|.|+++|.+++ +++|..|+++|.+++.++++++..+++.|+||.|+.+|.++++++++.|+|+|.||+.. ++.
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4678999999999988 99999999999999998999999999999999999999999999999999999999985 688


Q ss_pred             hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc------------------c
Q 042204          219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH------------------S  280 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~------------------~  280 (559)
                      ++..+.+.|++++|+.+|....+..+++.++++|+||+... ........+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            89999999999999999965567889999999999999854 4444455778999999871                  2


Q ss_pred             CCHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCChHH--------
Q 042204          281 NDKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH------RSSSVLSPALQTIGHIVAGDDFQ--------  345 (559)
Q Consensus       281 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~~--------  345 (559)
                      .++.++.+|.++|.||+..+++..+.+.+. |+++.|+.+|.+      .+...++.|+++|.|++......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            368999999999999998777766777775 777899999864      45678899999999999752211        


Q ss_pred             -----------------HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCH---HHHHHHH-HcCCHHHHHHH
Q 042204          346 -----------------TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNR---EQIQAVI-DAGLIGPLINL  404 (559)
Q Consensus       346 -----------------~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~li-~~~~i~~Li~l  404 (559)
                                       ...+.+.++++.|+.+|.+..++.+++.|+|+|.|++++..   ..++..+ +.+++|.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             11122335567889999654389999999999999998652   2334444 56789999999


Q ss_pred             hhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC--------ChHHHHHHHHHHHHHHHhhhhhccc
Q 042204          405 LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA--------NPTIVTVCLKGLENILKVGEAEKNM  476 (559)
Q Consensus       405 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--------d~~v~~~~l~~l~~il~~~~~~~~~  476 (559)
                      |.+++.++++.|+|+|.||+.+..  . ..++..|+++.|+.+|.+.        ..+++..++++|.|++...      
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~------  434 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN------  434 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC------
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC------
Confidence            999999999999999999998643  2 2345789999999999775        3578889999999998432      


Q ss_pred             ccccCcchHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHhhcCCC
Q 042204          477 DTAIGDVNQYAQLVEEAEGLEKIENLQSHE--NNEIHEKSVKILETYWCGR  525 (559)
Q Consensus       477 ~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~f~~~  525 (559)
                             ......+.+.|+++.|..|..+.  .+.+.+.|.+++..+|...
T Consensus       435 -------~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          435 -------LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             -------HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             -------HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence                   23477788999999999998875  8999999999999887644

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.6e-34  Score=319.20  Aligned_cols=405  Identities=17%  Similarity=0.169  Sum_probs=341.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.++.|++.|+++++.++..|+++|.++.+.. ......+.+.|+++.|+++|.+++ +.++..|+.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            68999999999999999999999999987753 566777778999999999999987 8999999999999999889999


Q ss_pred             HHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          179 KVVIDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      ..+++.|+++.|+.+|++.+ ...++.++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999998755 45667889999999964 55688888999999999999 55577899999999999998


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-CC-cchhhHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-SS-SVLSPALQTI  335 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~-~v~~~al~~L  335 (559)
                      ..+.  .....+++|.|+.++.+.++.++..|+|+|++|+..+++..+.+++.|+++.|+.+|.+. +. .++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  223468999999999999999999999999999988888888899999999999999873 33 8999999999


Q ss_pred             HHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChh-
Q 042204          336 GHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEIN-  411 (559)
Q Consensus       336 ~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~-  411 (559)
                      +||+..+..   ....+.+.++++.|+.+|.++..+.++++|+|+|+|++.+ +.....+.+.|+++.|+++|.+++++ 
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhH
Confidence            999875543   2346788899999999999883459999999999999876 44457888999999999999875544 


Q ss_pred             ---------------------HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          412 ---------------------IKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       412 ---------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                                           ++..++.+|.+++.  +++....+.+.|+++.|+.+|.+.++.++..++.+|.++..  
T Consensus       547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--  622 (780)
T 2z6g_A          547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--  622 (780)
T ss_dssp             HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--
Confidence                                 45566667777765  45666778899999999999999999999999999999862  


Q ss_pred             hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHH--------------------HHHHHHhhcCCCC
Q 042204          471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEK--------------------SVKILETYWCGRV  526 (559)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~--------------------a~~il~~~f~~~~  526 (559)
                                  .++++..|.+.|+++.|.+|+++++++|++.                    +..++..||..++
T Consensus       623 ------------~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~  686 (780)
T 2z6g_A          623 ------------DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  686 (780)
T ss_dssp             ------------SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred             ------------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence                        2336888999999999999999999999654                    5567777776553

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=295.42  Aligned_cols=327  Identities=16%  Similarity=0.160  Sum_probs=277.5

Q ss_pred             hHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcH----------HHHHHhhcCC
Q 042204           97 RLEIFAAMVAGVWSD------------DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVV----------PRFVEFLMRE  154 (559)
Q Consensus        97 ~~~~l~~lv~~L~s~------------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v----------~~Lv~lL~~~  154 (559)
                      +.|.+|.+++.|+..            +++.+++|+++|.+++++. ++..+...+.|++          +.+++++.+.
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            347899999999963            3799999999999999986 6677777788888          7777888764


Q ss_pred             C-CHH-----HHH-------HHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 042204          155 D-YPQ-----LQY-------EAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-----------PNDDIREQAVWALG  210 (559)
Q Consensus       155 ~-~~~-----~~~-------~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~  210 (559)
                      . ..+     +++       +|+|+|.|++. ++++|+.+++.|++++|+.+|..           .++.+++.|+|+|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~  225 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT  225 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence            2 012     444       99999999987 69999999999999999999942           34778999999999


Q ss_pred             HHhCCCchhhhhhh-ccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-C-CCcHhhHhchHHHHHHhh-ccCCHhHH
Q 042204          211 NVAGDSPRCRDLVL-SEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-P-RPIFEQVRPALPVLAQLV-HSNDKEVL  286 (559)
Q Consensus       211 nl~~~~~~~r~~i~-~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~-~~~~~~~~~~l~~L~~lL-~~~d~~v~  286 (559)
                      |++.+++..+..+. ..|++++|+.+| .+.+.+++..++|+|.||+... + ........|++|.|+.+| .+.++.++
T Consensus       226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            99988877776665 456699999999 5678899999999999999853 2 222333479999999975 56789999


Q ss_pred             HHHHHHHHHhccCChhHHHHHH-HhCcHHHHHHhhCCCCCc----chhhHHHHHHHhhc---CChHHHHHHHhCCChHHH
Q 042204          287 TDACWALYFLSNGKNDKIQAVI-EAGVCPRLVELLGHRSSS----VLSPALQTIGHIVA---GDDFQTQCIINCGALPYL  358 (559)
Q Consensus       287 ~~a~~~L~~l~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~----v~~~al~~L~nl~~---~~~~~~~~~~~~g~l~~L  358 (559)
                      ..++.+|++|+...++....+. ..|+++.|+.+|.+.+..    ++..|+++|.|++.   +++...+.+++.|+++.|
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L  384 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  384 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence            9999999999974544445555 789999999999987654    89999999999997   788888899999999999


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204          359 LVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       359 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~  427 (559)
                      +.+|.++ +..++++|+|+|+|++.+++++++.+++.|+++.|+++|.+++.++++.|+|+|.|++.+.
T Consensus       385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999998 9999999999999999889999999999999999999999999999999999999999863

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=6.5e-34  Score=302.73  Aligned_cols=413  Identities=15%  Similarity=0.127  Sum_probs=338.1

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.++.+++.|.+ ++++.+..|+..|+++...  .+++..+.+.|++|.|+++|++++ +.++..|+++|.+++..++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            578999999975 4899999999999997543  568888999999999999999988 999999999999999977788


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..+++.|++|.|+.+|.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+...+..++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999998888889999999999999999666566777789999999997


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      ...........++++.|+.++.+.++.++..++|+|.+++...+...   ...++++.|+++|.++++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            64333334447899999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcCCHH---HHHHHHHcCCHHHHHHHhhcCC-hhH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAGNRE---QIQAVIDAGLIGPLINLLQNAE-INI  412 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~li~~~~i~~Li~lL~~~~-~~v  412 (559)
                      ++.+++...+.+.+.|+++.|+.+|.+. .++.++..|+++|+|++.++++   ....+.+.|+++.|+++|.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            9998888888899999999999999763 1479999999999999875432   4567889999999999999876 599


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHH--HHhhh----------hhccccccc
Q 042204          413 KNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI--LKVGE----------AEKNMDTAI  480 (559)
Q Consensus       413 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~i--l~~~~----------~~~~~~~~~  480 (559)
                      ++.++|+|.|++.+  ++....+.+.|+++.|+.++.+.+++++..+.|++.+.  ...+.          .....    
T Consensus       373 ~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L----  446 (529)
T 1jdh_A          373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL----  446 (529)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH----
Confidence            99999999999985  33446788999999999999887777777666665551  00000          00000    


Q ss_pred             CcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          481 GDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       481 ~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      ......+..+.+.|+++.|..+..++++++++.|.+.+.++..
T Consensus       447 ~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence            0111245668889999999999999999999999999988653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=299.57  Aligned_cols=403  Identities=16%  Similarity=0.151  Sum_probs=341.7

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.++.+++.|.++ +++.+..|+..|+++...  .+.+..+.+.|++|.|+++|++++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            5789999999865 899999999999986443  558888999999999999999988 999999999999999977788


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..+++.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999998889999999987788888999999999999999766667788899999999997


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544444445789999999999999999999999999999654432   1123689999999999999999999999999


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCC-chhHHHHHHHHHHHhhcCC--HHHHH-HHHHcCCHHHHHHHhhcCC-hhH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSH-KKSIKNHACWTISKITAGN--REQIQ-AVIDAGLIGPLINLLQNAE-INI  412 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~--~~~~~-~li~~~~i~~Li~lL~~~~-~~v  412 (559)
                      ++..++...+.+.+.|+++.|+.+|.+.. .+.++..|+++|+|++..+  .+..+ .+++.|+++.|+++|.+++ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            99988888888999999999999998642 3799999999999998743  23334 4778999999999999875 699


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 042204          413 KNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN----------------------PTIVTVCLKGLENILKVG  470 (559)
Q Consensus       413 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d----------------------~~v~~~~l~~l~~il~~~  470 (559)
                      ++.|+|+|.|++.+.  +....+.+.|+++.|+.+|.+.+                      .+++..++.+|.++....
T Consensus       370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999853  34477889999999999987643                      355666777777666321


Q ss_pred             hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                                    ..+..+.+.|+++.|..+..+.++++++.|..++.++..
T Consensus       448 --------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          448 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             --------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             --------------HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence                          245678889999999999999999999999998877654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.1e-32  Score=302.19  Aligned_cols=402  Identities=15%  Similarity=0.157  Sum_probs=339.0

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.++.|++.|.++ ++..+..|+..|+++...  ..++..+.+.|++|.|+++|++++ +.++..|+++|.+|+...++.
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            5788999999854 899999999999996443  566888889999999999999988 999999999999999977888


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..+++.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.++++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            89999999999999999999999999999999999987788888888999999999999666556677788999999997


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            5433333445789999999999999999999999999999665432   1124689999999999999999999999999


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCCc-hhHHHHHHHHHHHhhcCCHH---HHHHHHHcCCHHHHHHHhhcCCh-hH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSHK-KSIKNHACWTISKITAGNRE---QIQAVIDAGLIGPLINLLQNAEI-NI  412 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~li~~~~i~~Li~lL~~~~~-~v  412 (559)
                      |+.+++...+.+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++   ....+.+.++++.|+++|.+++. .+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999988888889999999999999976313 48999999999999874333   23467789999999999998765 99


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC----------------------hHHHHHHHHHHHHHHHhh
Q 042204          413 KNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN----------------------PTIVTVCLKGLENILKVG  470 (559)
Q Consensus       413 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d----------------------~~v~~~~l~~l~~il~~~  470 (559)
                      ++.|+|+|.|++.+  ++....+.+.|+++.|+.+|.+.+                      .+++..++.+|.++... 
T Consensus       506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~-  582 (780)
T 2z6g_A          506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD-  582 (780)
T ss_dssp             HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC-
Confidence            99999999999974  455578889999999999986543                      34566677777776521 


Q ss_pred             hhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          471 EAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                                   ...+..+.+.|+++.|..+..+.+++|+..|..+|.++.
T Consensus       583 -------------~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          583 -------------IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             -------------HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             -------------hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence                         124567888999999999999999999999988877653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.9e-30  Score=257.97  Aligned_cols=273  Identities=17%  Similarity=0.159  Sum_probs=237.2

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch----------hhhHhHHHHHHHHHHHhhcCCCCCcHh
Q 042204          196 SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE----------HAKLSMLRTATWTLSNFCRGMPRPIFE  265 (559)
Q Consensus       196 ~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~----------~~~~~~~~~a~~~L~nL~~~~~~~~~~  265 (559)
                      .+....+.+|+|+|+|++.+ +++|+.+.+.|++++|+.+|..          ..++.+++.|+|+|.||+.+.+.....
T Consensus        43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~  121 (354)
T 3nmw_A           43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT  121 (354)
T ss_dssp             CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34456677999999999998 6889999999999999999942          235789999999999999886433333


Q ss_pred             h--HhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-ChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcC
Q 042204          266 Q--VRPALPVLAQLVHSNDKEVLTDACWALYFLSNG-KNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQTIGHIVAG  341 (559)
Q Consensus       266 ~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~  341 (559)
                      .  ..+++|.|+.+|.+++++++..++|+|+||+.. +++....+.+.|+++.|+++| .+.+..+++.|+++|+|++..
T Consensus       122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            3  356799999999999999999999999999975 456678889999999999974 667788999999999999996


Q ss_pred             ChHHHHHHH-hCCChHHHHHHhcCCCch----hHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          342 DDFQTQCII-NCGALPYLLVLLIHSHKK----SIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       342 ~~~~~~~~~-~~g~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      ++.....+. ..|+++.|+.+|.++ ++    .+++.|+|+|.|++.   +++++++.+++.|+++.|+.+|.+++.+++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~  280 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV  280 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence            655444555 789999999999876 43    599999999999986   789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE  471 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~  471 (559)
                      +.|+|+|.|++.. ++++...+++.|++++|+++|.+.++.+++.+.++|.+++...+
T Consensus       281 ~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          281 SNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999865 78899999999999999999999999999999999999997643

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.3e-30  Score=259.08  Aligned_cols=268  Identities=19%  Similarity=0.178  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHHHHhCCCchhhhhhh-c
Q 042204          158 QLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLAS-----------PNDDIREQAVWALGNVAGDSPRCRDLVL-S  225 (559)
Q Consensus       158 ~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~r~~i~-~  225 (559)
                      ..+..|+|+|.|++. ++++|+.+++.|+++.|+.+|..           .++.+++.|+|+|.|++..++..+..+. .
T Consensus        47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            556689999999999 68999999999999999999942           3478999999999999988777777775 4


Q ss_pred             cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-C-CCcHhhHhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCChh
Q 042204          226 EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-P-RPIFEQVRPALPVLAQLV-HSNDKEVLTDACWALYFLSNGKND  302 (559)
Q Consensus       226 ~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~-~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~~  302 (559)
                      .|++++|+.+| .+.+.+++..++|+|.||+... + ........|++|.|+.+| ++.+++++..++++|++|+...++
T Consensus       126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence            56699999999 5678899999999999999863 2 223333479999999975 667899999999999999975655


Q ss_pred             HHHHHH-HhCcHHHHHHhhCCCCCc----chhhHHHHHHHhhc---CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHH
Q 042204          303 KIQAVI-EAGVCPRLVELLGHRSSS----VLSPALQTIGHIVA---GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHA  374 (559)
Q Consensus       303 ~~~~~~-~~g~l~~L~~lL~~~~~~----v~~~al~~L~nl~~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a  374 (559)
                      ....+. ..|+++.|+.+|.+.++.    ++..|+++|.|++.   ++++.++.+.+.|+++.|+.+|.++ +..++++|
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A  283 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA  283 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence            555565 789999999999987653    88999999999997   6788888999999999999999998 99999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 042204          375 CWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGS  428 (559)
Q Consensus       375 ~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~  428 (559)
                      +|+|+|++.+++++++.+++.|+++.|+++|.+++.++++.|+|+|.|++.+..
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999998899999999999999999999999999999999999999998743

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=4e-27  Score=224.93  Aligned_cols=240  Identities=27%  Similarity=0.391  Sum_probs=222.1

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204          142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD  221 (559)
Q Consensus       142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  221 (559)
                      |.+|.|+++|++++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            67999999999999 99999999999999998888999999999999999999999999999999999999998888999


Q ss_pred             hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC-CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204          222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR-PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK  300 (559)
Q Consensus       222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  300 (559)
                      .+.+.|+++.++.++ .+.+..++..++|+|.+++...+. .......++++.|+.++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 567889999999999999975532 223334789999999999999999999999999999888


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204          301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK  380 (559)
Q Consensus       301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  380 (559)
                      +...+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999998888888899999999999999998 99999999999999


Q ss_pred             hhcC
Q 042204          381 ITAG  384 (559)
Q Consensus       381 l~~~  384 (559)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9863

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=5.3e-27  Score=226.92  Aligned_cols=235  Identities=18%  Similarity=0.139  Sum_probs=203.3

Q ss_pred             HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHH-hhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHH
Q 042204          283 KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE-LLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL  361 (559)
Q Consensus       283 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~l  361 (559)
                      .+-+..|+..|.+++... +....+...|+++.|+. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            456788999999999654 45667889999999999 9999999999999999999999999888999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 042204          362 LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCI  441 (559)
Q Consensus       362 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  441 (559)
                      |+++.+..+++.|+|+|+|++.+++...+.+++.|+++.|+.+|++++++++..|+|+|++++.+ +++.+..+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643789999999999999999999999999999999999999999999999999999999987 67888999999999


Q ss_pred             HHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHh
Q 042204          442 KPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE-NNEIHEKSVKILET  520 (559)
Q Consensus       442 ~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~  520 (559)
                      ++|+.+|.++++.++..++.+|.+++...........  ...+.+..++++     .++.+|.++ +.++|++|..||++
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987543321110  012447777874     488888776 89999999999999


Q ss_pred             hcCCCC
Q 042204          521 YWCGRV  526 (559)
Q Consensus       521 ~f~~~~  526 (559)
                      ||..++
T Consensus       285 ~f~~~~  290 (296)
T 1xqr_A          285 CFSSPA  290 (296)
T ss_dssp             HCC---
T ss_pred             HcCCCC
Confidence            997644

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.9e-27  Score=226.16  Aligned_cols=239  Identities=34%  Similarity=0.515  Sum_probs=220.0

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204          142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD  221 (559)
Q Consensus       142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  221 (559)
                      ...+.++..|.+++ ++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+|+|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            46899999999999 89999999999887776788889999999999999999999999999999999999998888899


Q ss_pred             hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC-cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204          222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP-IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK  300 (559)
Q Consensus       222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  300 (559)
                      .+.+.|+++.|+.++ .+.+..++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++|+|++++..+
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 5578899999999999999886444 34455789999999999999999999999999999888


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204          301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK  380 (559)
Q Consensus       301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  380 (559)
                      ++..+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999998888888999999999999999998 99999999999999


Q ss_pred             hhc
Q 042204          381 ITA  383 (559)
Q Consensus       381 l~~  383 (559)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.2e-26  Score=219.73  Aligned_cols=241  Identities=26%  Similarity=0.386  Sum_probs=222.6

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC-CCc
Q 042204          185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP-RPI  263 (559)
Q Consensus       185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~-~~~  263 (559)
                      |.++.|+.+|.+++++++..|+++|.+++...+..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++...+ ...
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            6789999999999999999999999999988887888999999999999999 56678999999999999998753 233


Q ss_pred             HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204          264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD  343 (559)
Q Consensus       264 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  343 (559)
                      .....++++.++.++.+++++++..++++|++++...++....+.+.|+++.|+++|.++++.++..|+++|+|++.+++
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            33447899999999999999999999999999998888888889999999999999999999999999999999999888


Q ss_pred             HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204          344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA  423 (559)
Q Consensus       344 ~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl  423 (559)
                      ...+.+.+.|+++.|+.++.++ ++.++..|+|+|+|++.++++..+.+.+.|+++.|++++.+++++++..|+++|.|+
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            8888899999999999999998 999999999999999998899999999999999999999999999999999999999


Q ss_pred             hcCC
Q 042204          424 TSGG  427 (559)
Q Consensus       424 ~~~~  427 (559)
                      ....
T Consensus       240 ~~~~  243 (252)
T 4hxt_A          240 KSGG  243 (252)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            8754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=9.3e-27  Score=222.64  Aligned_cols=238  Identities=36%  Similarity=0.543  Sum_probs=216.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.+++.|++++++.+..|++.|+++++. ..+.+..+++.|++|.|+++|++++ +.++..|+++|++++.++++.+.
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            468999999999999999999999998887 3677889999999999999999998 99999999999999998999999


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      .+++.|+++.|+.+|.++++.+++.|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|.+++...
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999987665447888999999999999 5668899999999999999875


Q ss_pred             CCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          260 PRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       260 ~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                      +... .....+++|.|+.++.++++.++..++++|++++..+++..+.+.+.|+++.|+.++.+.++.++..|+++|+|+
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3322 223478999999999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             hc
Q 042204          339 VA  340 (559)
Q Consensus       339 ~~  340 (559)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            75

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.6e-24  Score=229.14  Aligned_cols=322  Identities=11%  Similarity=0.126  Sum_probs=260.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH-hcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCch
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMR-EDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      ...+.+++.|.+++.+.+..|+..|..+ +.. .+.++.+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.
T Consensus       334 ~La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~  410 (778)
T 3opb_A          334 QLSEIFINAISRRIVPKVEMSVEALAYL-SLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEE  410 (778)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHH-TTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHH-hCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcc
Confidence            3567788888888877789999999996 432 55556555 55779999999996 45 78999999999999985331


Q ss_pred             --------------------------------------hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch
Q 042204          177 --------------------------------------DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR  218 (559)
Q Consensus       177 --------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  218 (559)
                                                            ++..+++.|++|.|+.+++++++.++++|+|+|.|++.+ +.
T Consensus       411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~  489 (778)
T 3opb_A          411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN  489 (778)
T ss_dssp             CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred             cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence                                                  356778899999999999999999999999999999977 67


Q ss_pred             hhhhhhccCCHHHHHHHhchhhhH--hHHHHHHHHHHHhhcCC-CCCcHh--hHhchHHHHHHhhcc-CCH---------
Q 042204          219 CRDLVLSEEALIPLLAQLNEHAKL--SMLRTATWTLSNFCRGM-PRPIFE--QVRPALPVLAQLVHS-NDK---------  283 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~~~~~~--~~~~~a~~~L~nL~~~~-~~~~~~--~~~~~l~~L~~lL~~-~d~---------  283 (559)
                      .|..+.+.|++++|+.++....+.  ..+..|+++|+++.... |...+.  ...+++|.|+.+|.. +..         
T Consensus       490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~  569 (778)
T 3opb_A          490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE  569 (778)
T ss_dssp             GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence            899999999999999999655433  27899999999998544 211110  113899999999972 211         


Q ss_pred             ----hHHHHHHHHHHHhccCCh----hHHHHHHHh-CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCC-
Q 042204          284 ----EVLTDACWALYFLSNGKN----DKIQAVIEA-GVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCG-  353 (559)
Q Consensus       284 ----~v~~~a~~~L~~l~~~~~----~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g-  353 (559)
                          --+..|+.+|.||+..++    +..+.++.. |+++.|..+|.+++..++..|+++++|++...+...+.+.+.+ 
T Consensus       570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~  649 (778)
T 3opb_A          570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN  649 (778)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred             cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence                126799999999998762    334667874 9999999999999999999999999999985543223343322 


Q ss_pred             -----ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc-CCHHHHHHHhhc--CChhHHHHHHHHHHHHhc
Q 042204          354 -----ALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA-GLIGPLINLLQN--AEINIKNWAAWAISNATS  425 (559)
Q Consensus       354 -----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~-~~i~~Li~lL~~--~~~~v~~~a~~aL~nl~~  425 (559)
                           .++.|+.++.+. +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.+  ++.+++..++.++.||+.
T Consensus       650 ~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          650 PQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             chhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence                 377899999988 99999999999999987778888888876 799999999998  899999999999999996

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.7e-23  Score=219.71  Aligned_cols=361  Identities=12%  Similarity=0.076  Sum_probs=282.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..++.|.+.+++  ..++..|+..|.++-+...... ..+.  .+.+.++++|.+++ .+-+..|++.|..++. +++.+
T Consensus       296 ~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VK  368 (778)
T 3opb_A          296 NYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVK  368 (778)
T ss_dssp             HHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHH
T ss_pred             hHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHH
Confidence            356777777765  4778889999999866532211 1111  26788899998877 5679999999999999 78888


Q ss_pred             HHHHhC-CCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCch--------------------------------------
Q 042204          179 KVVIDH-GAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPR--------------------------------------  218 (559)
Q Consensus       179 ~~i~~~-g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------  218 (559)
                      ..+++. |+++.|+.++++ .+..+...++.+|.|++...+.                                      
T Consensus       369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~  448 (778)
T 3opb_A          369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF  448 (778)
T ss_dssp             HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence            888775 569999999995 7788999999999999964331                                      


Q ss_pred             hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHh---HHHHHHHHHHH
Q 042204          219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKE---VLTDACWALYF  295 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~~L~~  295 (559)
                      .+..+.+.|++++|+.++ .+.++.++..++|+|.||+............|+++.|+.++.+....   .+..|+++|.+
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr  527 (778)
T 3opb_A          449 NEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR  527 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            345678899999999998 66788999999999999998755555555689999999999877544   89999999999


Q ss_pred             hccCChhHHHHHH--H-hCcHHHHHHhhCC-CCCc-------------chhhHHHHHHHhhcCCh----HHHHHHHhC-C
Q 042204          296 LSNGKNDKIQAVI--E-AGVCPRLVELLGH-RSSS-------------VLSPALQTIGHIVAGDD----FQTQCIINC-G  353 (559)
Q Consensus       296 l~~~~~~~~~~~~--~-~g~l~~L~~lL~~-~~~~-------------v~~~al~~L~nl~~~~~----~~~~~~~~~-g  353 (559)
                      ++...+... .+-  . .|+++.|+.+|.. +...             -+.+|+.+|.|++..++    ...+.++.. |
T Consensus       528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g  606 (778)
T 3opb_A          528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV  606 (778)
T ss_dssp             HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred             HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence            984433221 111  1 3899999999983 2211             15689999999999873    345667875 9


Q ss_pred             ChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH-HHHHHcC------CHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          354 ALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI-QAVIDAG------LIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       354 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~li~~~------~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      +++.|..+|.++ +..+|+.|+|+++|++.. ++.+ +.+.+.+      -++.|+.++..+|.++|+.|+|+|.|++..
T Consensus       607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999998 999999999999999873 4443 3443222      378999999999999999999999999754


Q ss_pred             CCHHHHHHHHHc-CChHHHHhcCCC--CChHHHHHHHHHHHHHHHhhh
Q 042204          427 GSHEQIKYLVRE-KCIKPLCDLLPC--ANPTIVTVCLKGLENILKVGE  471 (559)
Q Consensus       427 ~~~~~~~~l~~~-~~l~~L~~lL~~--~d~~v~~~~l~~l~~il~~~~  471 (559)
                       .+..+..+++. ++++.++.++..  ++++++..++-++.|++.+..
T Consensus       685 -~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~  731 (778)
T 3opb_A          685 -IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP  731 (778)
T ss_dssp             -CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred             -ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence             56677777776 799999999988  899999999999999997543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=4.1e-23  Score=191.52  Aligned_cols=198  Identities=36%  Similarity=0.537  Sum_probs=186.3

Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHH
Q 042204          268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ  347 (559)
Q Consensus       268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  347 (559)
                      .+..+.|..+++++|++++..|+|+|++++..+++..+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            56788999999999999999999999999988888888999999999999999999999999999999999998888888


Q ss_pred             HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204          348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       348 ~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~  427 (559)
                      .+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|++++.+++++++..|+++|.|++.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            999999999999999999 999999999999999998899999999999999999999999999999999999999986 


Q ss_pred             CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204          428 SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       428 ~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il  467 (559)
                      .++....+.+.|+++.|+.++.+.+++++..++++|.++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            5778888899999999999999999999999999999874

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=1.7e-22  Score=195.43  Aligned_cols=188  Identities=16%  Similarity=0.168  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHH
Q 042204          157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQ  235 (559)
Q Consensus       157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~l  235 (559)
                      .+-+..|+..|.+++. +.++...+++.|++|.|+. +|.++++.+++.|+|+|+|++.+++.+|+.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678999999999999 6778888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hchhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204          236 LNEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCP  314 (559)
Q Consensus       236 l~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~  314 (559)
                      |..+++..+++.|+|+|+|++++.+... .....+++|.|+.+|++++..++..|+|+|++++.++++.++.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            9655578999999999999999874332 233468999999999999999999999999999988888889999999999


Q ss_pred             HHHHhhCCCCCcchhhHHHHHHHhhcCChHH
Q 042204          315 RLVELLGHRSSSVLSPALQTIGHIVAGDDFQ  345 (559)
Q Consensus       315 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  345 (559)
                      .|+.+|.+++..+++.|+++|++|+.+.+..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            9999999999999999999999999985543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=8.4e-23  Score=189.37  Aligned_cols=199  Identities=34%  Similarity=0.500  Sum_probs=180.9

Q ss_pred             hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh
Q 042204          140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC  219 (559)
Q Consensus       140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  219 (559)
                      ..|..|.|+.+|++++ +.++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.+++.|+|+|+|++...+..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4578999999999998 999999999999999889999999999999999999999999999999999999999888888


Q ss_pred             hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204          220 RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN  298 (559)
Q Consensus       220 r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  298 (559)
                      +..+.+.|+++.|+.++ .+.+..++..++|+|.|++...+... .....+++|.|+.++.++++.++..++++|++++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            89999999999999999 66688999999999999998653322 23347899999999999999999999999999998


Q ss_pred             CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204          299 GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       299 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  340 (559)
                      .+++..+.+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            878888889999999999999999999999999999999975

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=4.2e-21  Score=177.48  Aligned_cols=197  Identities=18%  Similarity=0.124  Sum_probs=171.2

Q ss_pred             cHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204          143 VVPRFVEFLMREDYP--QLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR  220 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~--~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  220 (559)
                      .+|.++++|.+++ +  +++..|+++|.+++.++++++..+++.|+||.|+++|.++++++++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  899999999999998889999999999999999999999999999999999999999888899


Q ss_pred             hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc----------------cCCHh
Q 042204          221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH----------------SNDKE  284 (559)
Q Consensus       221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~----------------~~d~~  284 (559)
                      ..+.+.|++++|+.+|..+.+.++++.++.+|+||+.... .......+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999999655678999999999999987653 233445678999987652                13679


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcC
Q 042204          285 VLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVELLGH------RSSSVLSPALQTIGHIVAG  341 (559)
Q Consensus       285 v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~  341 (559)
                      ++.+|..+|+||+..+++..+.+.+. |+++.|+.+++.      .+.+.++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776777778775 788999999875      2556889999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=174.94  Aligned_cols=196  Identities=17%  Similarity=0.169  Sum_probs=165.2

Q ss_pred             HHHHHHHHhcCCCH--HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204          100 IFAAMVAGVWSDDN--NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus       100 ~l~~lv~~L~s~~~--~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      .+|.+++.|+++++  +.+..|+..++++.... ++++..+++.|+||.|+++|++++ +++|+.|+|+|.||+.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            57999999999988  88999999999976543 677889999999999999999988 999999999999999988999


Q ss_pred             HHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch---------------hhh
Q 042204          178 TKVVIDHGAVPIFVKLLA-SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE---------------HAK  241 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~---------------~~~  241 (559)
                      +..+++.|+||.|+++|. +++.+++++|+.+|+|++... ..+..+.+ +++++|+.++..               ..+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 579999999999999998764 45666665 468999876531               125


Q ss_pred             HhHHHHHHHHHHHhhcCCCCCcHhhH--hchHHHHHHhhcc------CCHhHHHHHHHHHHHhccC
Q 042204          242 LSMLRTATWTLSNFCRGMPRPIFEQV--RPALPVLAQLVHS------NDKEVLTDACWALYFLSNG  299 (559)
Q Consensus       242 ~~~~~~a~~~L~nL~~~~~~~~~~~~--~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~  299 (559)
                      ..++++++++|.||+...+..+..+.  .|+++.|+.+++.      .+...+++++.+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            68999999999999986533333332  5789999999874      2668999999999999854

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.77  E-value=8.4e-17  Score=172.79  Aligned_cols=380  Identities=12%  Similarity=0.143  Sum_probs=263.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204          101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV  180 (559)
Q Consensus       101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  180 (559)
                      +|.+...++++++..+..|+..+..+....  +.  ......++|.+..++++++ +.+|..|+.+|+.++.....   .
T Consensus       205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~  276 (588)
T 1b3u_A          205 IPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---E  276 (588)
T ss_dssp             HHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---H
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--CH--HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---c
Confidence            444444455555555555555555543321  11  0112336677777777666 67888888888877752111   1


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR-CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      .....+++.++.++.++++++|..|+++|+.++...+. .+........++.+..++ .+.+..++..++++|..++...
T Consensus       277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~  355 (588)
T 1b3u_A          277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL  355 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred             cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHh
Confidence            12345788999999999999999999999999854322 111111223456666666 6778899999999999987642


Q ss_pred             CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204          260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV  339 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  339 (559)
                      ..  ......++|.+..++++.+++++..++.++..+.......   .....+++.+..++.+.++.++..++.+++.++
T Consensus       356 ~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~  430 (588)
T 1b3u_A          356 GK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             CH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            11  1224568899999999999999999999998887433211   122357888999999999999999999999987


Q ss_pred             cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204          340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW  418 (559)
Q Consensus       340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~  418 (559)
                      ..-...   .....+++.+..+|.++ +..+|..|+.+++.++.. .++.    ....++|.|..++.++++.+|..+++
T Consensus       431 ~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~  502 (588)
T 1b3u_A          431 GQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLF  502 (588)
T ss_dssp             HHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHH
T ss_pred             HHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            521110   11224578888889888 899999999999999762 2221    12348888988888889999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHH
Q 042204          419 AISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEK  498 (559)
Q Consensus       419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~  498 (559)
                      ++..++.....+    .....+++.|..+++++++.++..++++|..+......           + +    .....++.
T Consensus       503 ~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----------~-~----~~~~~~p~  562 (588)
T 1b3u_A          503 CINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN-----------S-T----LQSEVKPI  562 (588)
T ss_dssp             HHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH-----------H-H----HHHHHHHH
T ss_pred             HHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch-----------h-h----hHHHHHHH
Confidence            999998642222    12345899999999999999999999999998854211           1 1    11344677


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          499 IENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       499 l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      |..+..+.+.+|+..|...+..+-
T Consensus       563 l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          563 LEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCchhHHHHHHHHHHHhh
Confidence            888899999999999999988653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.76  E-value=3.8e-17  Score=183.39  Aligned_cols=353  Identities=14%  Similarity=0.157  Sum_probs=259.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .-+.+++.|.++++.++..++..+..++..+....     -.++++.|++.+.+++ +.++..|+.+|+.++...+....
T Consensus        91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~  164 (852)
T 4fdd_A           91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILD  164 (852)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhc
Confidence            44667778888889999999999999887641111     2458899999999988 89999999999999974333211


Q ss_pred             HHH----hCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh-hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          180 VVI----DHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC-RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       180 ~i~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      .-.    -..+++.|++++.++++.+|..|+++|+++....+.. ...+  ...++.++..+ .+.+..+++.++++|..
T Consensus       165 ~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~-~d~~~~vr~~a~~~L~~  241 (852)
T 4fdd_A          165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALA-GDEEPEVRKNVCRALVM  241 (852)
T ss_dssp             HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHH-TCCCHHHHHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence            100    1246788888889999999999999999887554321 1111  13456666666 56788999999999999


Q ss_pred             hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhh-----------
Q 042204          255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELL-----------  320 (559)
Q Consensus       255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL-----------  320 (559)
                      ++...+.........+++.+..++.+.++.++..|++.+..+++....  ...+..   .+++.++..+           
T Consensus       242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~  319 (852)
T 4fdd_A          242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLK  319 (852)
T ss_dssp             HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence            998764333334567888888999999999999999999999865321  122221   4567777776           


Q ss_pred             CC-----------CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204          321 GH-----------RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI  389 (559)
Q Consensus       321 ~~-----------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  389 (559)
                      .+           .+..++..|..+|+.++......   ++. .+++.+...+.++ +..+|..|++++++++.+..+.+
T Consensus       320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~  394 (852)
T 4fdd_A          320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGM  394 (852)
T ss_dssp             C------------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHH
T ss_pred             CCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHH
Confidence            23           34567888999999988643321   222 4678888888888 99999999999999998877665


Q ss_pred             HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHH-HHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHE-QIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       390 ~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                      ...+. ++++.++..+.++++.+|..|+|++++++....+. ...+  -.++++.|+..+.+.++.++..++++|.++.+
T Consensus       395 ~~~l~-~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          395 IPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            54443 47999999999999999999999999988631110 0011  12467888888888899999999999999986


Q ss_pred             hhh
Q 042204          469 VGE  471 (559)
Q Consensus       469 ~~~  471 (559)
                      ...
T Consensus       472 ~~~  474 (852)
T 4fdd_A          472 EAC  474 (852)
T ss_dssp             HHG
T ss_pred             Hhh
Confidence            644

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.74  E-value=2.2e-16  Score=169.57  Aligned_cols=381  Identities=12%  Similarity=0.091  Sum_probs=284.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.+.+.++++++.++..|+..+..+....  +.  ......++|.+..++++++ +.+|..|+.+|..++...+..  
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence            5667777788899999999999999986542  11  1223568899999998888 899999999999998743321  


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                       .....++|.+..++.+++..+|..++.+|+.++.....   .......++.++.++ .+.++.++..++++|..++...
T Consensus       238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence             12235788899999999999999999999999743211   111233577788887 6778899999999999999875


Q ss_pred             CCCcH--hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          260 PRPIF--EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       260 ~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      +....  .....++|.+..++++.++.++..++++|+.++..-...   .....+++.+..++.++++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            33211  345778899999999999999999999999998432221   1223478889999998888999999999988


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWA  416 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a  416 (559)
                      ++......   .....++|.|..++.+. +..+|..++.++..++.. .++    .....+++.+...+.+++..+|..|
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a  461 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            87643211   11225678888888887 899999999999998741 111    1111267888888999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccH
Q 042204          417 AWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL  496 (559)
Q Consensus       417 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l  496 (559)
                      +.++..++....++.    ....+++.|..++.+++..++..+++++..+...-..           ..+     ....+
T Consensus       462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-----------~~~-----~~~~~  521 (588)
T 1b3u_A          462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-----------DIT-----TKHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-----------HHH-----HHHTH
T ss_pred             HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-----------HHH-----HHHHH
Confidence            999999987533332    2345788899988889999999999999998754211           111     23456


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          497 EKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       497 ~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      +.|..+..+++++|+..+.+.+..++.
T Consensus       522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          522 PTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence            788888899999999999999988764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.74  E-value=1e-16  Score=179.97  Aligned_cols=395  Identities=13%  Similarity=0.121  Sum_probs=277.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+-.++..+.+.+..+|..|+..|++.+... -.....-....+-+.+++.|.+++ +.+|..++.+++.|+......  
T Consensus        49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~--  124 (852)
T 4fdd_A           49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ--  124 (852)
T ss_dssp             HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT--
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc--
Confidence            3445555556788999999999999987642 111111122345567777788777 899999999999999843111  


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhh----ccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVL----SEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~----~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                        .-.+.++.|++.+.++++.+++.++.+|+.++.+.+...+.-.    -...++.++..+ .+.+..++..+++++.++
T Consensus       125 --~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~  201 (852)
T 4fdd_A          125 --NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQF  201 (852)
T ss_dssp             --TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTT
T ss_pred             --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence              1135789999999999999999999999999865443211100    012344555555 567889999999999988


Q ss_pred             hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204          256 CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI  335 (559)
Q Consensus       256 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  335 (559)
                      ....+.........+++.+..++.++++.++..++++|..++...++.....++ ++++.+...+.+.++.++..|+.++
T Consensus       202 ~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l  280 (852)
T 4fdd_A          202 IISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFW  280 (852)
T ss_dssp             TTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHH
Confidence            876443223334678899999999999999999999999999766654433333 4788888999998899999999999


Q ss_pred             HHhhcCChHHHHHHHhC---CChHHHHHHh-----------cC--C--------CchhHHHHHHHHHHHhhcCCHHHHHH
Q 042204          336 GHIVAGDDFQTQCIINC---GALPYLLVLL-----------IH--S--------HKKSIKNHACWTISKITAGNREQIQA  391 (559)
Q Consensus       336 ~nl~~~~~~~~~~~~~~---g~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~  391 (559)
                      ..++..... .. .+..   .+++.++..+           .+  .        .+..+|+.|+.++..++...++   .
T Consensus       281 ~~l~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~  355 (852)
T 4fdd_A          281 LTLAEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---E  355 (852)
T ss_dssp             HHHTTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---G
T ss_pred             HHHhcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---H
Confidence            999875421 11 2211   3456666665           22  0        1345789999999988753221   1


Q ss_pred             HHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204          392 VIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE  471 (559)
Q Consensus       392 li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~  471 (559)
                      ++. .+++.+...+.++++.+|..|++++++++.+.. +.... .-.++++.+..+++++++.|+..+++++.++.....
T Consensus       356 ~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  432 (852)
T 4fdd_A          356 LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV  432 (852)
T ss_dssp             GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred             HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            222 267788888888999999999999999998753 33222 123578999999999999999999999999886533


Q ss_pred             hhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          472 AEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      ...        ...+.     .+.++.|.+...+.++.|++.|.+.+..+..
T Consensus       433 ~~~--------~~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          433 SQP--------PDTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HSC--------TTTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cch--------HHHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            211        00111     1345666677777899999999999987754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.73  E-value=3.1e-16  Score=168.05  Aligned_cols=331  Identities=16%  Similarity=0.164  Sum_probs=229.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204          101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV  180 (559)
Q Consensus       101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  180 (559)
                      ++.+.+.|+++++.++..|+..+.++..   .+...     .++|.+.++|.+++ +.+|..|++++.++...+++..  
T Consensus        88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~--  156 (591)
T 2vgl_B           88 VNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV--  156 (591)
T ss_dssp             HHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH--
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc--
Confidence            4555566778888888888777777531   22222     25678999999888 9999999999999998666533  


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC
Q 042204          181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~  260 (559)
                       .+.+.++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ .+.++-.+..++.++..++... 
T Consensus       157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~-  233 (591)
T 2vgl_B          157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD-  233 (591)
T ss_dssp             -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS-
T ss_pred             -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC-
Confidence             2346789999999999999999999999999987764321111223466677776 3445556666777776665321 


Q ss_pred             CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC---ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          261 RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG---KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       261 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                         ......+++.+..++++.++.|+..|++++.++...   +++..+.+. ..+.+.|+.++. +++.++..|+.+|+.
T Consensus       234 ---~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~  308 (591)
T 2vgl_B          234 ---DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINL  308 (591)
T ss_dssp             ---HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence               233467888888899999999999999999999742   333444333 345677777664 778899999999999


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA  417 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~  417 (559)
                      ++...+.....     .+..+. .+.++ +..+|..|++++.+++..  ++++.     +++.|...+.+.+.+++..++
T Consensus       309 i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~--~nv~~-----iv~~L~~~l~~~d~~~r~~~v  374 (591)
T 2vgl_B          309 IVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQ--ANIAQ-----VLAELKEYATEVDVDFVRKAV  374 (591)
T ss_dssp             HHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCS--STHHH-----HHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCCh--hhHHH-----HHHHHHHHHhcCCHHHHHHHH
Confidence            98754422111     111111 11244 577888888888888643  22332     455677777778888888888


Q ss_pred             HHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          418 WAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       418 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                      ++|++++... +....     .+++.|++++...+..++..++.++..++...
T Consensus       375 ~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~  421 (591)
T 2vgl_B          375 RAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY  421 (591)
T ss_dssp             HHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence            8888888763 22222     25678888887777777777777777777543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.72  E-value=3.7e-16  Score=151.37  Aligned_cols=260  Identities=13%  Similarity=0.101  Sum_probs=203.8

Q ss_pred             HHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc
Q 042204          138 VIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP  217 (559)
Q Consensus       138 ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  217 (559)
                      ....+.++.|+..|.+++ +.+|..|+++|+++..           .++++.|+.++.++++.++..|+++|+.+.....
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            345678999999999888 9999999999999874           2468899999999999999999999999864322


Q ss_pred             hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhc
Q 042204          218 RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS  297 (559)
Q Consensus       218 ~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  297 (559)
                      ....      .++.+...+..+.+..++..++++|.++....+    .....+++.|..++.++++.++..++++|+++.
T Consensus        87 ~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             THHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            2111      123333233366788999999999999985432    123467889999999999999999999999886


Q ss_pred             cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHH
Q 042204          298 NGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWT  377 (559)
Q Consensus       298 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~  377 (559)
                      .           .+.++.|+.++.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3           2478999999999999999999999999854333         3467888999888 99999999999


Q ss_pred             HHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCC-CCChHHH
Q 042204          378 ISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLP-CANPTIV  456 (559)
Q Consensus       378 L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~  456 (559)
                      |+++.  +         ...++.|+..+.+++  ++..|+++|..+..            ..+++.|..++. .++++++
T Consensus       216 L~~~~--~---------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~~~  270 (280)
T 1oyz_A          216 LSYRK--D---------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEII  270 (280)
T ss_dssp             HHHTT--C---------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHH
T ss_pred             HHHhC--C---------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcHHH
Confidence            99985  2         247888999997654  88999999998853            136788888885 4677888


Q ss_pred             HHHHHHHHH
Q 042204          457 TVCLKGLEN  465 (559)
Q Consensus       457 ~~~l~~l~~  465 (559)
                      ..+.+.+.+
T Consensus       271 ~~~~~~l~~  279 (280)
T 1oyz_A          271 TSAIDKLKR  279 (280)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhhc
Confidence            887777653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=2.6e-14  Score=147.59  Aligned_cols=411  Identities=13%  Similarity=0.145  Sum_probs=292.7

Q ss_pred             HHHHHHHHHhcC--CCHHHHHHHHHHHHHhccCCCCc----------------hHHHHH-hcCcHHHHHHhhcCCCCHHH
Q 042204           99 EIFAAMVAGVWS--DDNNLQLEATTKFRKLLSIERSP----------------PIEEVI-QSGVVPRFVEFLMREDYPQL  159 (559)
Q Consensus        99 ~~l~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~----------------~~~~ii-~~g~v~~Lv~lL~~~~~~~~  159 (559)
                      .+++.++..|+.  .|.+....++..|..+++.+..+                ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            468999999985  57788888999998887754221                122333 5678999999999988 899


Q ss_pred             HHHHHHHHHHHhcCCch-hHHHHHhC-CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc
Q 042204          160 QYEAAWALTNIASKTSE-DTKVVIDH-GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN  237 (559)
Q Consensus       160 ~~~a~~~L~nl~~~~~~-~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~  237 (559)
                      |..++.+|..++...++ ..+.+... ++++.|+.+|.+..+.+|..++..|.+++.++++.++.+.-.|+++.|++++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999997777 66777754 99999999999999999999999999999999999999999999999999995


Q ss_pred             hhh---hHhHHHHHHHHHHHhhcCCC-CCcHhhHhchHHHHHHhhccCCH------hHHHH---HHHHHHHhccCC----
Q 042204          238 EHA---KLSMLRTATWTLSNFCRGMP-RPIFEQVRPALPVLAQLVHSNDK------EVLTD---ACWALYFLSNGK----  300 (559)
Q Consensus       238 ~~~---~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~~l~~L~~lL~~~d~------~v~~~---a~~~L~~l~~~~----  300 (559)
                      ...   ...+...++.++.||.+..+ ........+++|.|..++..+++      ....+   ++.++.-++...    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            432   23577889999999999874 33344457889999999875432      23344   566666666442    


Q ss_pred             --hhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChHHHHHHHhCC---------ChHHHHHHhcCCCc
Q 042204          301 --NDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTIGHIVAGDDFQTQCIINCG---------ALPYLLVLLIHSHK  367 (559)
Q Consensus       301 --~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~g---------~l~~L~~lL~~~~~  367 (559)
                        ......+.+.|+++.|++++..+  ...++..|+.+++.+.+++....+.+.+..         ++..|+.++.+...
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              23456788999999999998875  456889999999999999987666554432         33345555655547


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHc----------CCH---HHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 042204          368 KSIKNHACWTISKITAGNREQIQAVIDA----------GLI---GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKY  434 (559)
Q Consensus       368 ~~v~~~a~~~L~nl~~~~~~~~~~li~~----------~~i---~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  434 (559)
                      ..+|.+|+.++..+..++++....++..          +.+   ..|..-+-+.|+.-.--|+.++.++... +++....
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~  457 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ  457 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence            8899999999999998887655555532          111   1244555556665445588888888876 4444444


Q ss_pred             HHH-----------cCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHH
Q 042204          435 LVR-----------EKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENL  502 (559)
Q Consensus       435 l~~-----------~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L  502 (559)
                      +..           .-+++.+..+|. ..++++...-+..|...+..            .++....++.+...+..|...
T Consensus       458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e------------~p~AV~dFL~~~s~l~~L~~~  525 (651)
T 3grl_A          458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSN------------CPIAVTHFLHNSANVPFLTGQ  525 (651)
T ss_dssp             HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTT------------CHHHHHHHHHSTTHHHHHHHH
T ss_pred             HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhC------------ChHHHHHHHcCCchHHHHHHH
Confidence            333           112555566664 35677766666666666633            334456677766677777765


Q ss_pred             hcC--C--CHHHHHHHHHHHHhhcC
Q 042204          503 QSH--E--NNEIHEKSVKILETYWC  523 (559)
Q Consensus       503 ~~~--~--~~~v~~~a~~il~~~f~  523 (559)
                      ..+  .  +.-|+-.+.-++--++.
T Consensus       526 i~~~~~~~~~lvqGL~a~LLGi~ye  550 (651)
T 3grl_A          526 IAENLGEEEQLVQGLCALLLGISIY  550 (651)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCcchHHHHHHHHHHHHHHhh
Confidence            432  2  23356666666655443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.69  E-value=2.3e-14  Score=147.97  Aligned_cols=368  Identities=14%  Similarity=0.143  Sum_probs=268.0

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCch
Q 042204           99 EIFAAMVAGVWSD-DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        99 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      +.++.|...+.+. -.+.+..|+..|+.+. +.   .. ..+.+++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s-k~---y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLS-KK---YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTT-TT---TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHH-HH---hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            5789999988854 4789999999999973 32   22 233456889999999865 3478899999999998775432


Q ss_pred             -----------------hHHHH-HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-hhhhhhc-cCCHHHHHHHh
Q 042204          177 -----------------DTKVV-IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR-CRDLVLS-EEALIPLLAQL  236 (559)
Q Consensus       177 -----------------~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~-~g~l~~Ll~ll  236 (559)
                                       .++.+ .+.+.++.|+.+|++.+..+|..++.+|..++...+. .++.++. .++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             12233 3467899999999999999999999999999987776 7788874 48999999999


Q ss_pred             chhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhccCC----HhHHHHHHHHHHHhccCChhHHHHHHHhC
Q 042204          237 NEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHSND----KEVLTDACWALYFLSNGKNDKIQAVIEAG  311 (559)
Q Consensus       237 ~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  311 (559)
                       .+....++..++..|.+|+++.+... ....+++++.|+.++....    ..+..+++.++.+|...+......+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             56667788889999999999874433 3344799999999997654    47899999999999999888888899999


Q ss_pred             cHHHHHHhhCCCCCc------chhh---HHHHHHHhhcCCh------HHHHHHHhCCChHHHHHHhcCCC-chhHHHHHH
Q 042204          312 VCPRLVELLGHRSSS------VLSP---ALQTIGHIVAGDD------FQTQCIINCGALPYLLVLLIHSH-KKSIKNHAC  375 (559)
Q Consensus       312 ~l~~L~~lL~~~~~~------v~~~---al~~L~nl~~~~~------~~~~~~~~~g~l~~L~~lL~~~~-~~~v~~~a~  375 (559)
                      .++.|..+|..++..      ....   ++.++.-++..+.      .....+.++|+++.|+.++..+. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999764332      1122   6666776766522      23456788999999999987542 567999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHcC---------CHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc----C--
Q 042204          376 WTISKITAGNREQIQAVIDAG---------LIGPLINLLQNA-EINIKNWAAWAISNATSGGSHEQIKYLVRE----K--  439 (559)
Q Consensus       376 ~~L~nl~~~~~~~~~~li~~~---------~i~~Li~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~--  439 (559)
                      .+++.++.+++.....+.+..         ++..|+.++.+. ..++|.+|+.++..+..+. ++....++..    .  
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~  413 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTID  413 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCcccc
Confidence            999999999988877776532         233344444433 5789999999999999873 3333333322    0  


Q ss_pred             ----Ch---HHHHhcCCCCChHHHHHHHHHHHHHHHhhhhh
Q 042204          440 ----CI---KPLCDLLPCANPTIVTVCLKGLENILKVGEAE  473 (559)
Q Consensus       440 ----~l---~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~  473 (559)
                          .+   ..|+.-+-+.|+.-.--+.-++..++......
T Consensus       414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~  454 (651)
T 3grl_A          414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ  454 (651)
T ss_dssp             CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence                01   12334444556633333555666666554433

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.66  E-value=7.8e-15  Score=157.21  Aligned_cols=330  Identities=15%  Similarity=0.115  Sum_probs=243.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.+++.+++++...+..+...+..++... ++..     .-+++.+.+-|++++ +.+|..|+.+|+++..  ++...
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~-----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~  120 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMA-----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE  120 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHH-----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHH-----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence            5678888999999999988888887765431 1111     125678888888888 9999999999999864  44444


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      .     +++.+.+++.++++.+|..|++++.+++...|+.   +...+.++.+..+| .+.++.++..|+++|..++...
T Consensus       121 ~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          121 Y-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             H-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred             H-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence            3     3578999999999999999999999998766542   22335677788877 6788999999999999999876


Q ss_pred             CCC-cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          260 PRP-IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       260 ~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                      +.. ........++.|+..+...++..+..++.+++.++..++...     ..+++.+..++.+.++.|+..|++++..+
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            533 233345667778888888899999999999999885544332     24678888899999999999999999998


Q ss_pred             hcC---ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHH
Q 042204          339 VAG---DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNW  415 (559)
Q Consensus       339 ~~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~  415 (559)
                      ...   +++..+.+. ..+.+.|+.++. + ++.+|..|+.+|..+....++.++.     .+..+. .+.+++..++..
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~  337 (591)
T 2vgl_B          267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLE  337 (591)
T ss_dssp             CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHH
T ss_pred             hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHH
Confidence            742   233333332 255677776664 6 8999999999999997643332211     111121 122445899999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          416 AAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       416 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      |++.+.+++...+   +..     +++.|..++.+.|.+++..+.++|..+...
T Consensus       338 al~~L~~l~~~~n---v~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~  383 (591)
T 2vgl_B          338 KLDIMIRLASQAN---IAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIK  383 (591)
T ss_dssp             HHHHHHHTCCSST---HHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCChhh---HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence            9999999886543   222     466777888888999999998888887643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.63  E-value=4.5e-14  Score=136.61  Aligned_cols=257  Identities=14%  Similarity=0.127  Sum_probs=196.4

Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204          182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR  261 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~  261 (559)
                      ...+.++.|+..|.++++.+|..|+++|+++..           ...++.|+..+ .+.+..++..++++|..+..... 
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~~~-   86 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFC-SDKNYIRRDIGAFILGQIKICKK-   86 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTT-
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHH-cCCCHHHHHHHHHHHHHhccccc-
Confidence            346789999999999999999999999999851           12478888888 67788999999999999864321 


Q ss_pred             CcHhhHhchHHHHH-HhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 042204          262 PIFEQVRPALPVLA-QLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVA  340 (559)
Q Consensus       262 ~~~~~~~~~l~~L~-~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  340 (559)
                          ....+++.|. .+++++++.++..++++|+++....+...     ..+++.|...+.++++.++..|+++|+++..
T Consensus        87 ----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           87 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence                1233455555 34678899999999999999974433221     2357889999999999999999999998754


Q ss_pred             CChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHH
Q 042204          341 GDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI  420 (559)
Q Consensus       341 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL  420 (559)
                                 ...++.|..++.++ ++.+|..|+|+|+.+....+.         .++.|+.++.++++.++..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHH
Confidence                       25789999999998 999999999999998544443         567888999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHH
Q 042204          421 SNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIE  500 (559)
Q Consensus       421 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~  500 (559)
                      .++..            ...++.|..++.+++  ++..+.++|..+-   .                     ...++.|.
T Consensus       217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~---~---------------------~~~~~~L~  258 (280)
T 1oyz_A          217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELG---D---------------------KTLLPVLD  258 (280)
T ss_dssp             HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC---C---------------------GGGHHHHH
T ss_pred             HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC---c---------------------hhhhHHHH
Confidence            98852            236778888887654  7777888877642   1                     12345555


Q ss_pred             HHh-cCCCHHHHHHHHHHHH
Q 042204          501 NLQ-SHENNEIHEKSVKILE  519 (559)
Q Consensus       501 ~L~-~~~~~~v~~~a~~il~  519 (559)
                      .+. .++++++...+...+.
T Consensus       259 ~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          259 TMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhcCCCcHHHHHHHHHhh
Confidence            554 5677888777777664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.62  E-value=4.1e-14  Score=158.99  Aligned_cols=354  Identities=13%  Similarity=0.189  Sum_probs=243.9

Q ss_pred             HHHHHHHHhcCC-------CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204          100 IFAAMVAGVWSD-------DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus       100 ~l~~lv~~L~s~-------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  172 (559)
                      .+|.++..+...       ++..+..+...|..+...-.....     ..+++.+.+.+++.+ +..|..|+++|+.++.
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence            567777777642       346777888888876543211111     135677777888877 8999999999999998


Q ss_pred             CCc-hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh---hhhhhccCCHHHHHHHhchhhhHhHHHHH
Q 042204          173 KTS-EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC---RDLVLSEEALIPLLAQLNEHAKLSMLRTA  248 (559)
Q Consensus       173 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a  248 (559)
                      +.. +.....+. .+++.++..+.++++.+|..++|+++.++......   ...  -...++.++..+. +. +.++..+
T Consensus       399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~-~~-~~v~~~a  473 (861)
T 2bpt_A          399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQ-DH-PKVATNC  473 (861)
T ss_dssp             SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHT-SC-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhc-cC-hHHHHHH
Confidence            643 33333332 57899999999999999999999999998532110   011  1124667777773 33 7889999


Q ss_pred             HHHHHHhhcCCC----CCcHhhHhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC
Q 042204          249 TWTLSNFCRGMP----RPIFEQVRPALPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH  322 (559)
Q Consensus       249 ~~~L~nL~~~~~----~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~  322 (559)
                      +|++.+++....    .........+++.|..++.+.+  +.++..++.+++.++...+......+. .+++.++..+..
T Consensus       474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~  552 (861)
T 2bpt_A          474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ  552 (861)
T ss_dssp             HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence            999999987532    2222445778888888887544  789999999999998655443333333 356666666542


Q ss_pred             C---------------CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCch-hHHHHHHHHHHHhhcCCH
Q 042204          323 R---------------SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKK-SIKNHACWTISKITAGNR  386 (559)
Q Consensus       323 ~---------------~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~  386 (559)
                      .               ...++..++.+|++++...........+ .+++.+..++.+. +. .++..++++++.++....
T Consensus       553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~  630 (861)
T 2bpt_A          553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG  630 (861)
T ss_dssp             HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred             HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence            1               2346778999999998755432211222 4677788888877 66 899999999999986322


Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC--hHHHHHHHHHHH
Q 042204          387 EQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN--PTIVTVCLKGLE  464 (559)
Q Consensus       387 ~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~~l~~l~  464 (559)
                      ......+.. ++|.|...+.+.+++++..++.++..++.........++  ..+++.+...+.+.+  ++++..++.++.
T Consensus       631 ~~~~~~l~~-i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~  707 (861)
T 2bpt_A          631 KGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG  707 (861)
T ss_dssp             GGGHHHHHH-HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred             hhHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence            223333333 788999999888899999999999998875433322232  236777778776654  889999999999


Q ss_pred             HHHHhh
Q 042204          465 NILKVG  470 (559)
Q Consensus       465 ~il~~~  470 (559)
                      .++...
T Consensus       708 ~l~~~~  713 (861)
T 2bpt_A          708 DIASNI  713 (861)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.61  E-value=3.8e-14  Score=159.20  Aligned_cols=401  Identities=12%  Similarity=0.139  Sum_probs=266.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT-  178 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~-  178 (559)
                      .++.+.+.+.+.++..+..|+..+..+............+. .++|.++..+.+++ +.+|..++|+|+.++....... 
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence            44556667788899999999999999875421122222232 47899999998887 9999999999999986321100 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC-----chhhhhhhccCCHHHHHHHhch-hhhHhHHHHHHHHH
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDS-----PRCRDLVLSEEALIPLLAQLNE-HAKLSMLRTATWTL  252 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~r~~i~~~g~l~~Ll~ll~~-~~~~~~~~~a~~~L  252 (559)
                      ..-.-..+++.++..+.++ +.++..|+|+|.+++...     ......+  ...++.++..+.. +.+..++..++.++
T Consensus       448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            0000124578888888776 899999999999997431     1111121  1235566666642 33468899999999


Q ss_pred             HHhhcCCCCCcHhhHhchHHHHHHhhccC---------------CHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHH
Q 042204          253 SNFCRGMPRPIFEQVRPALPVLAQLVHSN---------------DKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLV  317 (559)
Q Consensus       253 ~nL~~~~~~~~~~~~~~~l~~L~~lL~~~---------------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~  317 (559)
                      ..++...+.........++|.++..+...               ...++..++.+|..++...+........ .+++.+.
T Consensus       525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~  603 (861)
T 2bpt_A          525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF  603 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred             HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence            99998765444445566777777776521               3457788999999988654432222222 4678888


Q ss_pred             HhhCCCCC-cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 042204          318 ELLGHRSS-SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAG  396 (559)
Q Consensus       318 ~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~  396 (559)
                      ..+.+.+. .++..++.+++.++..........+. .+++.+...+.++ ++.++..|+++++.++....+.+..... .
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~  680 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-A  680 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-H
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchHH-H
Confidence            88888776 89999999999998654333322333 4788889899777 8889999999999998633333333333 3


Q ss_pred             CHHHHHHHhhcCC--hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCC-----------hHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAE--INIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCAN-----------PTIVTVCLKGL  463 (559)
Q Consensus       397 ~i~~Li~lL~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d-----------~~v~~~~l~~l  463 (559)
                      +++.+++.+.+.+  ++++..++.+++.++.........++-  .+++.+...+....           ..++..+++++
T Consensus       681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~  758 (861)
T 2bpt_A          681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY  758 (861)
T ss_dssp             HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence            7788888888764  889999999999998753333333332  35777777776431           35778888888


Q ss_pred             HHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC----CHHHHHHHHHHHHhhc
Q 042204          464 ENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE----NNEIHEKSVKILETYW  522 (559)
Q Consensus       464 ~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~----~~~v~~~a~~il~~~f  522 (559)
                      ..++..-.....      ...++...     .++.|.....+.    +..+++.|..++..+.
T Consensus       759 ~~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~  810 (861)
T 2bpt_A          759 VGIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA  810 (861)
T ss_dssp             HHHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence            888854221000      01112222     234454554442    7899999998888764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.57  E-value=1.8e-13  Score=142.20  Aligned_cols=389  Identities=11%  Similarity=0.058  Sum_probs=266.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHH
Q 042204          101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      +..++..+.++|.+.+..|...|..+-..  +       ..++++.|+.++.+.+ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            45677778899999999999999885321  0       1246677888887652 489999999999999764311110


Q ss_pred             H-----------HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh--hHhHHH
Q 042204          180 V-----------VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA--KLSMLR  246 (559)
Q Consensus       180 ~-----------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~--~~~~~~  246 (559)
                      .           -....+-..|+..|.++++.+ ..++.+++.|+..... ...  -.+.++.++..+ .+.  +..++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~-~~~--w~~ll~~L~~~l-~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIP-VNQ--WPELIPQLVANV-TNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGG-GTC--CTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcc-ccc--cHHHHHHHHHHh-ccCCCCHHHHH
Confidence            0           011123456778888888888 8899999999854211 001  134677888888 444  778999


Q ss_pred             HHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccC--CHhHHHHHHHHHHHhccCChhHHH-HHHHhCcHHHHHHhhCC
Q 042204          247 TATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN--DKEVLTDACWALYFLSNGKNDKIQ-AVIEAGVCPRLVELLGH  322 (559)
Q Consensus       247 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~  322 (559)
                      .++.+|..++... +.........+++.+..++.+.  ++.++..++++++++...-.+... .....-+++.+...+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999999754 2222334466888899999887  789999999999987643322111 01111246777777888


Q ss_pred             CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHH---------------
Q 042204          323 RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE---------------  387 (559)
Q Consensus       323 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---------------  387 (559)
                      +++.++..+++++..++..........+...+++.++..+.+. ++.++..|++.+..++.....               
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  307 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence            8889999999999999875543322222226777788888887 899999999999988743110               


Q ss_pred             ------HHHHHHHcCCHHHHHHHhhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChH
Q 042204          388 ------QIQAVIDAGLIGPLINLLQN-------AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPT  454 (559)
Q Consensus       388 ------~~~~li~~~~i~~Li~lL~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~  454 (559)
                            ..+..+ ..++|.++..+..       .++.++..|..+|..++........     ..+++.+...+.++++.
T Consensus       308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHH
T ss_pred             cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChH
Confidence                  111111 2256777777753       2457899999999999875432221     23677888888999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          455 IVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       455 v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      ++..++.+|..+.......           .+...+  ...++.|..+..++++.|+..|.+.+.++..
T Consensus       382 ~r~aal~~l~~l~~~~~~~-----------~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          382 YRDAAVMAFGCILEGPEPS-----------QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHHTSSSSCTT-----------TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHH-----------HHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999988522100           001111  3467888888899999999999999998865

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.57  E-value=2.1e-13  Score=153.50  Aligned_cols=406  Identities=13%  Similarity=0.176  Sum_probs=260.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh--
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED--  177 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~--  177 (559)
                      .++.+...+.+.++..+..|+..+..+............. ..++|.++..|++++ +.+|..|+|+|++++...+..  
T Consensus       367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T 1qgr_A          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence            4566667788899999999999999987643112232222 448999999999888 999999999999999854331  


Q ss_pred             -HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc---------------hhhhhhhccCCHHHHHHHhchhh-
Q 042204          178 -TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP---------------RCRDLVLSEEALIPLLAQLNEHA-  240 (559)
Q Consensus       178 -~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---------------~~r~~i~~~g~l~~Ll~ll~~~~-  240 (559)
                       ...+  ..+++.|+..+.++ +.++..++|+|++++....               .....+  ...++.|+..+.... 
T Consensus       445 ~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~  519 (876)
T 1qgr_A          445 NDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDG  519 (876)
T ss_dssp             STTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSS
T ss_pred             cHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCc
Confidence             1111  24677888888775 8999999999999984311               011111  124555555553321 


Q ss_pred             -hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc-----------CC----HhHHHHHHHHHHHhccCCh-hH
Q 042204          241 -KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS-----------ND----KEVLTDACWALYFLSNGKN-DK  303 (559)
Q Consensus       241 -~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d----~~v~~~a~~~L~~l~~~~~-~~  303 (559)
                       +..++..+..++..++...+.........++|.++..+..           +|    ++++..+++++..++..-. ..
T Consensus       520 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~  599 (876)
T 1qgr_A          520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD  599 (876)
T ss_dssp             CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             chhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence             3467778888999888876544445556777777766542           22    4567889999999986655 33


Q ss_pred             HHHHHHhCcHHHHHHhhCCCC--CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204          304 IQAVIEAGVCPRLVELLGHRS--SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI  381 (559)
Q Consensus       304 ~~~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl  381 (559)
                      ..... ..+++.++.++.+..  ..++..++.+++.++..........+. .+++.+...|.+..++.+|..|+++++.+
T Consensus       600 ~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l  677 (876)
T 1qgr_A          600 ALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDL  677 (876)
T ss_dssp             HHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence            33322 347888888888764  468899999999998743322222222 36678888887643688999999999999


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHhhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC----Ch--
Q 042204          382 TAGNREQIQAVIDAGLIGPLINLLQN--AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA----NP--  453 (559)
Q Consensus       382 ~~~~~~~~~~li~~~~i~~Li~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~----d~--  453 (559)
                      +......+...++ .+++.|++.+.+  .+.+++..+++++++++....++...++  ..+++.|...+..+    |+  
T Consensus       678 ~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~  754 (876)
T 1qgr_A          678 CRALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDM  754 (876)
T ss_dssp             HHHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHH
T ss_pred             HHHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHH
Confidence            8632223333333 378888888887  3678999999999999863222222222  22566666666543    22  


Q ss_pred             -----HHHHHHHHHHHHHHHhhhhhccc-ccccCcchHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHhhc
Q 042204          454 -----TIVTVCLKGLENILKVGEAEKNM-DTAIGDVNQYAQLVEEAEGLEKIENLQSHE--NNEIHEKSVKILETYW  522 (559)
Q Consensus       454 -----~v~~~~l~~l~~il~~~~~~~~~-~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~f  522 (559)
                           .++..++.++..++......... ..+.....+|...+     ++.+..+..++  +..++..|..++..+.
T Consensus       755 ~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~  826 (876)
T 1qgr_A          755 VDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC  826 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence                 67888888888887653221000 00000122233332     24455554555  7899999888877643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.57  E-value=1.7e-13  Score=147.35  Aligned_cols=292  Identities=18%  Similarity=0.121  Sum_probs=182.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      ....+++.+.+++...+..+.-.+..++..  ++....    -+++.|.+-|++++ +.+|..|+++|+++..  ++.. 
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~-  140 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMC-  140 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHH-
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHH-
Confidence            556778888899999888888888887543  222111    15778888899888 8999999999999985  3322 


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                          ..+++.+..+|.++++.+|..|+.+++++....|+...     +.++.+..++ .+.++.++..|+++|..++...
T Consensus       141 ----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          141 ----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             ----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSH
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhC
Confidence                24678899999999999999999999999876665322     3556666666 6778899999999999998764


Q ss_pred             CCCcHhhHhchHHHHHHhhcc---------------CCHhHHHHHHHHHHHhccCChhHHHHHHH---------------
Q 042204          260 PRPIFEQVRPALPVLAQLVHS---------------NDKEVLTDACWALYFLSNGKNDKIQAVIE---------------  309 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL~~---------------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~---------------  309 (559)
                      +.. .......+|.++.+|..               .++..+..++.+|+.++..+++..+.+.+               
T Consensus       211 ~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~  289 (618)
T 1w63_A          211 PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNV  289 (618)
T ss_dssp             HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccch
Confidence            321 22345667777766642               47888888888888888655432111100               


Q ss_pred             ----------------------hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCc
Q 042204          310 ----------------------AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHK  367 (559)
Q Consensus       310 ----------------------~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~  367 (559)
                                            ..++..|..++.++++.++..|+.+|+.++...+..    +. .....++..+.++ +
T Consensus       290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d  363 (618)
T 1w63_A          290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-D  363 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-C
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-C
Confidence                                  012334444444455555555555555555422211    11 2334444555554 5


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204          368 KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       368 ~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~  425 (559)
                      ..+|..|..++..++..  .++..     +++.|...+.+.+.+++..++.+|+.++.
T Consensus       364 ~~Ir~~alelL~~l~~~--~nv~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          364 VSIKRRAMELSFALVNG--NNIRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHHHHHHHHHHHHHCCS--SSTHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccc--ccHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            55555555555555432  11111     23444445555555555555555555554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.56  E-value=4.2e-13  Score=151.03  Aligned_cols=275  Identities=18%  Similarity=0.212  Sum_probs=195.2

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchH-HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204          100 IFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus       100 ~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~-~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      .++.+.+.+.++  +...+..|+.++..++..- .+.. .......+++.+.+.+.+++ ++++..++++|..++...++
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHH
Confidence            566777788876  6889999999999876532 1111 01111236778888887777 89999999999999986655


Q ss_pred             hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch------------------hhhhhh--ccCCHHHHHHHh
Q 042204          177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR------------------CRDLVL--SEEALIPLLAQL  236 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~------------------~r~~i~--~~g~l~~Ll~ll  236 (559)
                      .....+...+++.++..+.+.++.++..|++++.+++.....                  ......  -...++.++..+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l  330 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence            544444457889999988889999999999999988743110                  000000  012355566666


Q ss_pred             ch------hhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh-hHHHHHHH
Q 042204          237 NE------HAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN-DKIQAVIE  309 (559)
Q Consensus       237 ~~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~  309 (559)
                      ..      +.+..++..+..++..++...+   ......+++.+...+.+.++.++..++++++.++.... +.....+ 
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-  406 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-  406 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence            32      2345788888999988887543   13356778888888888999999999999999997654 3333333 


Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHH--HHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQT--QCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      ..+++.++..+.++++.+|..|++++++++.......  ...+ ..+++.|+..|.+  ++.++..|+|++.+++.
T Consensus       407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence            3588999999999999999999999999997543211  0111 1456777888765  47899999999999975

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.54  E-value=2.6e-14  Score=148.49  Aligned_cols=360  Identities=12%  Similarity=0.089  Sum_probs=243.8

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCch----------HHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHH
Q 042204          100 IFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPP----------IEEVIQSGVVPRFVEFLMREDYPQLQYEAAWAL  167 (559)
Q Consensus       100 ~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~----------~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L  167 (559)
                      .+..+...+.+.  +..++..|+..|++++...-.+.          ...-....+-..++..|.+++ +.+ ..++.++
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i  113 (462)
T 1ibr_B           36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence            445566666654  68899999999999875421000          000011234456777888777 678 8999999


Q ss_pred             HHHhcCCchhHHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhh-hHh
Q 042204          168 TNIASKTSEDTKVVIDHGAVPIFVKLLASP--NDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHA-KLS  243 (559)
Q Consensus       168 ~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~-~~~  243 (559)
                      +.|+.......   .-.+.++.|+..+.++  ++.+++.++.+|+.++.+. +..-.... ...++.++..+.... +..
T Consensus       114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~  189 (462)
T 1ibr_B          114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN  189 (462)
T ss_dssp             HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence            99987421110   1146889999999888  8999999999999998643 22111111 124666777774432 688


Q ss_pred             HHHHHHHHHHHhhcCCCC--CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhC
Q 042204          244 MLRTATWTLSNFCRGMPR--PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLG  321 (559)
Q Consensus       244 ~~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~  321 (559)
                      ++..+++++.++......  ........+++.+...+.+.++.++..++++|..++....+.....+..++++.++..+.
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (462)
T 1ibr_B          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (462)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999997643210  001111235777777788889999999999999998655543322232267788888888


Q ss_pred             CCCCcchhhHHHHHHHhhcCChH---------------------HHHHHHhCCChHHHHHHhcCC------CchhHHHHH
Q 042204          322 HRSSSVLSPALQTIGHIVAGDDF---------------------QTQCIINCGALPYLLVLLIHS------HKKSIKNHA  374 (559)
Q Consensus       322 ~~~~~v~~~al~~L~nl~~~~~~---------------------~~~~~~~~g~l~~L~~lL~~~------~~~~v~~~a  374 (559)
                      +.++.++..|+..+..++.....                     .....+ ..+++.++..+...      .+..+|..|
T Consensus       270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a  348 (462)
T 1ibr_B          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHH
Confidence            88889999999999988764210                     000001 23456666666432      145799999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChH
Q 042204          375 CWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPT  454 (559)
Q Consensus       375 ~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~  454 (559)
                      +.+|..++...++   .++. .+++.+...+.+.++.+|..|+.+++.++.+..++..... -..+++.++.++.++++.
T Consensus       349 ~~~L~~l~~~~~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~  423 (462)
T 1ibr_B          349 GVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVV  423 (462)
T ss_dssp             HHHHHHHHHHTTT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHH
Confidence            9999999863222   2222 3677788888899999999999999999986543221111 145789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 042204          455 IVTVCLKGLENILKVGE  471 (559)
Q Consensus       455 v~~~~l~~l~~il~~~~  471 (559)
                      ++..++++|.++...-.
T Consensus       424 Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          424 VRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999987643

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.52  E-value=1e-12  Score=153.30  Aligned_cols=407  Identities=13%  Similarity=0.110  Sum_probs=270.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ..++.++..+.+.|.+.+..|+..|.+.+..... ..+.-....+++.+++.|.+++ +.+|..|+.+|+.++...++. 
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-   82 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-   82 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH-
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH-
Confidence            3678999999999999999999999987654311 1111111246788999998777 899999999999999855441 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh------hhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC------RDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL  252 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L  252 (559)
                       .+  ..+++.|+..+.++++.+|..|+.+|+.++...+..      .... -...++.|+..+..+.+..++..++.++
T Consensus        83 -~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l  158 (1230)
T 1u6g_C           83 -QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIM  158 (1230)
T ss_dssp             -HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred             -HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence             11  236788888898989999999999999998543321      0001 1235777888874346778999999999


Q ss_pred             HHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCC-CcchhhH
Q 042204          253 SNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS-SSVLSPA  331 (559)
Q Consensus       253 ~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~a  331 (559)
                      ..++...+.........+++.+...+.+.++.++..++.+++.++...++.   + -..+++.++..|.+.+ ..++..+
T Consensus       159 ~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a  234 (1230)
T 1u6g_C          159 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTY  234 (1230)
T ss_dssp             HHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHH
Confidence            999964432222345778888888999989999999999999999665432   1 2246788887776543 5788899


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-----
Q 042204          332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ-----  406 (559)
Q Consensus       332 l~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~-----  406 (559)
                      +.+++.++..........+ ..+++.++..+.+. ++.+|..+++++..++...++.+...+. .+++.+++.+.     
T Consensus       235 ~~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~  311 (1230)
T 1u6g_C          235 IQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNY  311 (1230)
T ss_dssp             HHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC---
T ss_pred             HHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCC
Confidence            9999999875433221111 36789999999887 8999999999999988632221111111 13333333221     


Q ss_pred             --------------------------------cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChH
Q 042204          407 --------------------------------NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPT  454 (559)
Q Consensus       407 --------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~  454 (559)
                                                      +..+++|..|+.++..++.... +....+ -..+++.|...+.+.+..
T Consensus       312 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~-~~~l~~~l~~~l~d~~~~  389 (1230)
T 1u6g_C          312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREEN  389 (1230)
T ss_dssp             ---------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSH
T ss_pred             CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHH-HHHHHHHHHHHcCCCchH
Confidence                                            1124678999999999887433 222222 245788899999888999


Q ss_pred             HHHHHHHHHHHHHHhhhhhccccc------ccCcchH-HHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          455 IVTVCLKGLENILKVGEAEKNMDT------AIGDVNQ-YAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       455 v~~~~l~~l~~il~~~~~~~~~~~------~~~~~~~-~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      ++..++.++..++...........      ...+... ....+  ...++.+.....++++.++..+..++..+..
T Consensus       390 Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          390 VKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            999999999888764221000000      0000000 11111  1234566666778888988888877776543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.51  E-value=7e-12  Score=134.79  Aligned_cols=357  Identities=13%  Similarity=0.112  Sum_probs=253.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+..+-+.+++++...+..++..+..+.... .+.      ..+.+..++++.+++ ...+..+.-.+..++..+++...
T Consensus        35 e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~~  106 (618)
T 1w63_A           35 ECAAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPA------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVHL  106 (618)
T ss_dssp             HHHHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCC------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCC------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHHH
Confidence            4556667777777666777766666554332 221      236677788888888 79999999899999986655333


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      .     ++..|.+-|.++++.++..|+++|+++..  +.   .+  ...++.+...+ .+.++.+++.|+.++.++....
T Consensus       107 l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~---~~--~~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~  173 (618)
T 1w63_A          107 L-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE---MC--RDLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKV  173 (618)
T ss_dssp             H-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH---HH--HHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHC
T ss_pred             H-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH---HH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHC
Confidence            2     46788889999999999999999999963  22   11  12466777777 6788999999999999999865


Q ss_pred             CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC---------------CC
Q 042204          260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH---------------RS  324 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~---------------~~  324 (559)
                      |.    .+...++.+..++.+.|+.|+..|+++|..++..+++....+.  .+++.++.+|.+               .+
T Consensus       174 p~----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~  247 (618)
T 1w63_A          174 PE----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISD  247 (618)
T ss_dssp             GG----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred             hH----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence            42    3347788888899999999999999999999976554322222  567777776652               35


Q ss_pred             CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc------CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCH
Q 042204          325 SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI------HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI  398 (559)
Q Consensus       325 ~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i  398 (559)
                      +-.+..++++|+.++..++....     ..++.|..++.      +. +..+..+|++++..+.. .+....     ..+
T Consensus       248 ~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~-~~aV~~ea~~~i~~l~~-~~~l~~-----~a~  315 (618)
T 1w63_A          248 PFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNV-GNAILYETVLTIMDIKS-ESGLRV-----LAI  315 (618)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTH-HHHHHHHHHHHHHHSCC-CHHHHH-----HHH
T ss_pred             ChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccch-HHHHHHHHHHHHHhcCC-CHHHHH-----HHH
Confidence            66778899999999987654332     35556666653      23 56899999999998854 333222     256


Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhccccc
Q 042204          399 GPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDT  478 (559)
Q Consensus       399 ~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~  478 (559)
                      +.|..++.++++.+|..|+.+|..+... .+.    ++ ......+..++.++|..++..+++++..+....        
T Consensus       316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~-~p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~--------  381 (618)
T 1w63_A          316 NILGRFLLNNDKNIRYVALTSLLKTVQT-DHN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN--------  381 (618)
T ss_dssp             HHHHHHHTCSSTTTHHHHHHHHHHHHHH-HHH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS--------
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHhh-CHH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc--------
Confidence            7888899999999999999999999874 222    22 235678889999999999999999998876321        


Q ss_pred             ccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       479 ~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                           | ....      ++.|.....+.+.+++..+...|..+
T Consensus       382 -----n-v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~l  412 (618)
T 1w63_A          382 -----N-IRGM------MKELLYFLDSCEPEFKADCASGIFLA  412 (618)
T ss_dssp             -----S-THHH------HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             -----c-HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                 1 1111      23333444456677777666666554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.43  E-value=6.5e-12  Score=115.78  Aligned_cols=188  Identities=20%  Similarity=0.189  Sum_probs=157.4

Q ss_pred             CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc
Q 042204          184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI  263 (559)
Q Consensus       184 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~  263 (559)
                      .+.++.|+.+|.++++.+|..|+++|+.+..           ...++.|+..+ .+.+..++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            4578999999999999999999999999742           23578899988 56788999999999998853      


Q ss_pred             HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 042204          264 FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD  343 (559)
Q Consensus       264 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  343 (559)
                          ...++.|..++.++++.++..++++|+.+..           .+.++.|+.+|.++++.++..|+++|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                3578899999999999999999999999863           2467899999999999999999999999843   


Q ss_pred             HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204          344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA  423 (559)
Q Consensus       344 ~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl  423 (559)
                              ...++.|..++.++ ++.+|..|+++|+.+.  .+.         .++.|..++.++++.++..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    14678899999888 9999999999999994  333         577788899999999999999999998


Q ss_pred             hcCC
Q 042204          424 TSGG  427 (559)
Q Consensus       424 ~~~~  427 (559)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.43  E-value=5.1e-12  Score=147.31  Aligned_cols=399  Identities=12%  Similarity=0.132  Sum_probs=262.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch----HHHHHhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcC
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP----IEEVIQSGVVPRFVEFLMR-EDYPQLQYEAAWALTNIASK  173 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~----~~~ii~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nl~~~  173 (559)
                      ..++.++..+.++++..+..|+..+..+...-....    ...-....++|.|++.+.+ ++ +.++..|+.+|..++..
T Consensus        86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence            356778888888888888888888888765432210    0111223578999999984 66 89999999999999852


Q ss_pred             CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204          174 TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS  253 (559)
Q Consensus       174 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~  253 (559)
                      ..+.-.. .-..+++.|+..|.++++.+|..|+.+|+.++...+.   .+ -...++.++..+....+..++..++.++.
T Consensus       165 ~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~  239 (1230)
T 1u6g_C          165 QGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA  239 (1230)
T ss_dssp             TCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             hHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence            2211100 0124667888888889999999999999999865432   11 12357788888855444456777888888


Q ss_pred             HhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-----------
Q 042204          254 NFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-----------  322 (559)
Q Consensus       254 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----------  322 (559)
                      .++...+..-......++|.+...+.+++++++..+++++..++....+.....+ ..+++.++..+..           
T Consensus       240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~  318 (1230)
T 1u6g_C          240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDE  318 (1230)
T ss_dssp             HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----------
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCccccc
Confidence            8887654322234578899999999988999999999999988865443222222 2245555554431           


Q ss_pred             --------------------------CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHH
Q 042204          323 --------------------------RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACW  376 (559)
Q Consensus       323 --------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~  376 (559)
                                                ..+.+|..|+.++..++.........++ ..+++.+...+.+. +..+|..++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~  396 (1230)
T 1u6g_C          319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFH  396 (1230)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHH
T ss_pred             ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHH
Confidence                                      1234688899999988874443233333 36778888888777 8899999998


Q ss_pred             HHHHhhc--CC-----------------HHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204          377 TISKITA--GN-----------------REQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR  437 (559)
Q Consensus       377 ~L~nl~~--~~-----------------~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  437 (559)
                      ++..++.  +.                 ...+..++. .+++.+...+.+.++.++..++.++..++.........++  
T Consensus       397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--  473 (1230)
T 1u6g_C          397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--  473 (1230)
T ss_dssp             HHHHHHHHHCCC------------CCCHHHHHHHHTT-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--
T ss_pred             HHHHHHHHhccccccccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--
Confidence            8887764  11                 122222322 2677777779999999999999999988865321111111  


Q ss_pred             cCChHHHHhcCCCCC--hHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHH
Q 042204          438 EKCIKPLCDLLPCAN--PTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSV  515 (559)
Q Consensus       438 ~~~l~~L~~lL~~~d--~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~  515 (559)
                      ..+++.+...|.+..  ..++..++..+..++.....           ..+...+  ...++.|.....+.+..|+..|.
T Consensus       474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~-----------~~~~~~l--~~llp~L~~~l~d~~~~v~~~al  540 (1230)
T 1u6g_C          474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP-----------QVFHPHV--QALVPPVVACVGDPFYKITSEAL  540 (1230)
T ss_dssp             HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG-----------GGGHHHH--TTTHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH-----------HHHHhHH--HHHHHHHHHHHcccchHHHHHHH
Confidence            236778888887765  48888888888887753211           1112222  23456666666777888877776


Q ss_pred             HHHHhhc
Q 042204          516 KILETYW  522 (559)
Q Consensus       516 ~il~~~f  522 (559)
                      .++..+.
T Consensus       541 ~~l~~l~  547 (1230)
T 1u6g_C          541 LVTQQLV  547 (1230)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.43  E-value=1.1e-11  Score=113.17  Aligned_cols=184  Identities=20%  Similarity=0.214  Sum_probs=157.3

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcH
Q 042204          185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF  264 (559)
Q Consensus       185 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~  264 (559)
                      +..+.++++|.++++.+|..|+++|+.+..           ...++.|+..+ .+.+..++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            467889999999999999999999998742           13578899998 67788999999999998853       


Q ss_pred             hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH
Q 042204          265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF  344 (559)
Q Consensus       265 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  344 (559)
                         ...++.|..++.++++.++..++++|+.+..           ...++.|+.+|.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               3578899999999999999999999999863           2367889999999999999999999999853    


Q ss_pred             HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204          345 QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT  424 (559)
Q Consensus       345 ~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~  424 (559)
                             ...++.|..++.++ ++.+|..|+++|+.+  +.++         .++.|..++.++++.++..|..+|.++-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~--~~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHH--CSHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHh--Cchh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 999999999999999  3343         5777888899999999999999998864

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.42  E-value=5.1e-12  Score=116.53  Aligned_cols=187  Identities=20%  Similarity=0.199  Sum_probs=157.7

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204          141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR  220 (559)
Q Consensus       141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  220 (559)
                      ...++.|+++|++++ +.+|..|+++|+.+..           ..+++.|+.+|.++++.++..|+++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457899999999888 9999999999998865           2578999999999999999999999999842      


Q ss_pred             hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204          221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK  300 (559)
Q Consensus       221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  300 (559)
                           .+.++.|+..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23578888888 67788999999999998854          3578899999999999999999999999852  


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204          301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK  380 (559)
Q Consensus       301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  380 (559)
                               ...++.|..++.++++.++..|+++|+.+..  +         .+++.|..++.++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2357889999999999999999999999853  1         3467888899888 99999999999999


Q ss_pred             hhcC
Q 042204          381 ITAG  384 (559)
Q Consensus       381 l~~~  384 (559)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.41  E-value=5.6e-12  Score=115.29  Aligned_cols=184  Identities=21%  Similarity=0.208  Sum_probs=157.5

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204          142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD  221 (559)
Q Consensus       142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  221 (559)
                      +..+.++++|++++ +.+|..|+++|+.+..           .+.++.|+.+|.++++.++..|+++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            46789999999999 9999999999998865           2578999999999999999999999999842       


Q ss_pred             hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCCh
Q 042204          222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKN  301 (559)
Q Consensus       222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  301 (559)
                          ...++.|+..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..   
T Consensus        75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                13578888888 67788999999999999753          3478889999999999999999999999863   


Q ss_pred             hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204          302 DKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI  381 (559)
Q Consensus       302 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl  381 (559)
                              .+.++.|..++.++++.++..|+++|+.+..  +         ..++.|..++.++ ++.+|..|.++|..+
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    2467889999999999999999999999832  2         2467888889888 999999999999987


Q ss_pred             h
Q 042204          382 T  382 (559)
Q Consensus       382 ~  382 (559)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.34  E-value=9.3e-10  Score=117.91  Aligned_cols=331  Identities=15%  Similarity=0.127  Sum_probs=232.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      ..+.+++.+.+++...+..+.-.+..++... ++....     +++.+.+=|++++ +.++..|+++|+++..  ++...
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~L-----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELIRL-----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHHH-----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHHHH-----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence            4577888999999999998888888875432 221211     4677888888888 9999999999999965  44333


Q ss_pred             HHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          180 VVIDHGAVPIFVKLL--ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                           .+++.+.+++  .+.++.||..|+.++.++....|+   .+...+.++.+..+| .+.++.++.+|+.++..++.
T Consensus       146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence                 3568888999  889999999999999999876554   333346788888888 67888999999999999998


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccC-------------CHhHHHHHHHHHHHhccCC-hhHHHHHHHhCcHHHHHHhhC--
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSN-------------DKEVLTDACWALYFLSNGK-NDKIQAVIEAGVCPRLVELLG--  321 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~-------------d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~--  321 (559)
                      ..+..-.......+..|..++...             ++..+...+..+..++..+ ++....+.+  ++..++..+.  
T Consensus       217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~  294 (621)
T 2vgl_A          217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP  294 (621)
T ss_dssp             HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred             hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence            653211112233334444444321             6889999999999988643 333333332  3444444332  


Q ss_pred             -------CCCC--cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 042204          322 -------HRSS--SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV  392 (559)
Q Consensus       322 -------~~~~--~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  392 (559)
                             +.+.  .|...|.+++..+.. .+....     .++..|..+|.+. ++.+|..|+.+|..++...+.  ...
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~  365 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEA  365 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHH
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHH
Confidence                   1122  677788888888753 232222     3567788888888 899999999999999875431  112


Q ss_pred             HHcCCHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          393 IDAGLIGPLINLLQ-NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       393 i~~~~i~~Li~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                      +. ...+.++..|. ++|..++..++..+..++.   +.++..     ++..|...+...|.+++..+..++..+..
T Consensus       366 ~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          366 VK-THIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            22 36778888888 8899999999999999975   344444     44556666666788877777777766653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.21  E-value=1.4e-09  Score=116.46  Aligned_cols=330  Identities=12%  Similarity=0.116  Sum_probs=221.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhh--cCCCCHHHHHHHHHHHHHHhcCCch
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFL--MREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL--~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      -.+..+.+-++++++..+-.|++.+.++..   ++    +. ..++|.+.++|  .+.+ |-+|..|+.++.++...+++
T Consensus       111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~  181 (621)
T 2vgl_A          111 LINNAIKNDLASRNPTFMGLALHCIANVGS---RE----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPD  181 (621)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HH----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HH----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChh
Confidence            356778888999999999999999998732   12    22 23678889999  7777 99999999999999986654


Q ss_pred             hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch------h----------h
Q 042204          177 DTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE------H----------A  240 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~------~----------~  240 (559)
                      ...   ..+.++.+.++|.++++.++..|+.++..++..++..   +  ...++.++..|.+      .          +
T Consensus       182 ~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~  253 (621)
T 2vgl_A          182 LVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVP  253 (621)
T ss_dssp             GCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred             hcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence            332   2488999999999999999999999999998765541   1  1134444444421      1          1


Q ss_pred             hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh---------ccCCH--hHHHHHHHHHHHhccCChhHHHHHHH
Q 042204          241 KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV---------HSNDK--EVLTDACWALYFLSNGKNDKIQAVIE  309 (559)
Q Consensus       241 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL---------~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~  309 (559)
                      ++-.+...+..|..++...+..........++.++..+         ++.+.  .|...++.++..+.. .++..+    
T Consensus       254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~----  328 (621)
T 2vgl_A          254 APWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV----  328 (621)
T ss_dssp             SHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH----
T ss_pred             CchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH----
Confidence            34455556666666654321111111223333333322         12233  788888999988862 332222    


Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHH
Q 042204          310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQ  388 (559)
Q Consensus       310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~  388 (559)
                       .++..|..+|.++++.++..|+.+|..++...+. ...+.  .....++..|. ++ +..+|..|+.++..++  ++.+
T Consensus       329 -~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~--~~~N  401 (621)
T 2vgl_A          329 -RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTER-DVSVRQRAVDLLYAMC--DRSN  401 (621)
T ss_dssp             -HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHC--CHHH
T ss_pred             -HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCC-CHhHHHHHHHHHHHHc--Chhh
Confidence             2567788999888999999999999999976532 11222  45677888888 77 8999999999999996  4566


Q ss_pred             HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                      +..+     +..|...+...|.+++..++.+|+.++..-.+..      .-+++.|++++......+...+...+..++.
T Consensus       402 v~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~  470 (621)
T 2vgl_A          402 AQQI-----VAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVI  470 (621)
T ss_dssp             HHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHG
T ss_pred             HHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence            6554     5568888888899999999999998875211111      1135666666654444444444445555553

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.17  E-value=3.6e-10  Score=122.64  Aligned_cols=217  Identities=16%  Similarity=0.124  Sum_probs=158.4

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHHHHhCC-Cch
Q 042204          141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFV-KLLASPNDDIREQAVWALGNVAGD-SPR  218 (559)
Q Consensus       141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~-~~~  218 (559)
                      ..++| +++.|++++ +..|..|+++|++|+. +++.+..+...|+|..++ .+|.+++.+++..|+++|.||+.+ .+.
T Consensus        34 ~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            34555 556789988 8999999999999998 789999999999988765 578899999999999999999965 466


Q ss_pred             hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204          219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN  298 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  298 (559)
                      .++.+...|++++|+.++...         ...+..+........ ......+           ..+...++.+|.+|+.
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e  169 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLAL  169 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhh---------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHh
Confidence            778888999999999998321         112222211110000 0001111           2345667778888888


Q ss_pred             CChhHHHHHHHhCcHHHHHHhhCCC---CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh--cCCCchhHHHH
Q 042204          299 GKNDKIQAVIEAGVCPRLVELLGHR---SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL--IHSHKKSIKNH  373 (559)
Q Consensus       299 ~~~~~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~~v~~~  373 (559)
                      .+++....+...+.++.|+..|.+.   ...++..|+.+|.+++..++...+.+.+.+....+..++  ... ....+..
T Consensus       170 ~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~l  248 (684)
T 4gmo_A          170 ARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVM  248 (684)
T ss_dssp             HCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHH
T ss_pred             CCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHH
Confidence            8888888888889999999988543   346889999999999999998888888876543333332  223 3445788


Q ss_pred             HHHHHHHhh
Q 042204          374 ACWTISKIT  382 (559)
Q Consensus       374 a~~~L~nl~  382 (559)
                      ++++|.|+.
T Consensus       249 a~giL~Ni~  257 (684)
T 4gmo_A          249 ACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhHh
Confidence            999999985

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.02  E-value=6.9e-08  Score=82.16  Aligned_cols=219  Identities=15%  Similarity=0.163  Sum_probs=174.7

Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCC
Q 042204          182 IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPR  261 (559)
Q Consensus       182 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~  261 (559)
                      .+..++..++.+|.+.-..++.+|+..+.+++...|+..+-     .+..|+.++..+...........++..++...| 
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-
Confidence            34567889999999999999999999999999887765333     356677777777777777788888998887653 


Q ss_pred             CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 042204          262 PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG  341 (559)
Q Consensus       262 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  341 (559)
                         ..+.+.+|.+..-..-.|+.++.+...+|..+...+++...     +++..+..++.+++..-+..|+..|+.+...
T Consensus       103 ---e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          103 ---ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             ---HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             ---HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence               55678889888888888999999999999999988776543     4567788999988877788888888888765


Q ss_pred             ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHH
Q 042204          342 DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS  421 (559)
Q Consensus       342 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~  421 (559)
                      ....   +.  -.+|.|..+|... +.-||..|..+|.+++..++.....+.      .-+.-+.+.+..+++.+..+|+
T Consensus       175 ~~~y---v~--PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          175 SFKY---VN--PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             THHH---HG--GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHH
T ss_pred             Cccc---cC--cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHH
Confidence            5433   32  5789999999999 999999999999999988887444332      2355567778889999999999


Q ss_pred             HHhcC
Q 042204          422 NATSG  426 (559)
Q Consensus       422 nl~~~  426 (559)
                      .++.-
T Consensus       243 rl~l~  247 (253)
T 2db0_A          243 RLLLL  247 (253)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            88753

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.97  E-value=2.1e-08  Score=89.19  Aligned_cols=224  Identities=17%  Similarity=0.137  Sum_probs=171.4

Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHH
Q 042204          268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQ  347 (559)
Q Consensus       268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  347 (559)
                      .+.+..|.++++..|+.++.+++.+|..+....+.......-..+++.++.++.+.+..+...|+++|+.+..+.+-.-.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45778899999999999999999999999866444444444456899999999999999999999999999987653222


Q ss_pred             HHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204          348 CIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       348 ~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~  425 (559)
                      .+.  .+...|.+++.++ ++-++.+|+-.++-+--.  .+.         ++..+..++.+.+.+++..++.++.+++.
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~~---------V~~~l~sLl~Skd~~vK~agl~~L~eia~  179 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSKL---------VRTYINELVVSPDLYTKVAGFCLFLNMLN  179 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCHH---------HHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchHH---------HHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence            222  3467888999988 999999999999988322  222         56678888889999999999999999987


Q ss_pred             CC-CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHh-
Q 042204          426 GG-SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQ-  503 (559)
Q Consensus       426 ~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~-  503 (559)
                      .. +++.     -.+++.-+-.+|+++|+.++..++.++..++...-.          .|..-   +-.+......+|. 
T Consensus       180 ~S~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~----------~~~~~---~~~~~~~~v~~l~~  241 (265)
T 3b2a_A          180 SSADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL----------ENVKI---ELLKISRIVDGLVY  241 (265)
T ss_dssp             GCSSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC----------SCCHH---HHHHHHHHHHHGGG
T ss_pred             ccCCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc----------HhHHH---HHHHHHHHHHHHHH
Confidence            53 2222     234677888899999999999999999999966221          11111   2234456777787 


Q ss_pred             cCCCHHHHHHHHHHHHhh
Q 042204          504 SHENNEIHEKSVKILETY  521 (559)
Q Consensus       504 ~~~~~~v~~~a~~il~~~  521 (559)
                      ....|.++.+|-.+.+..
T Consensus       242 ~~~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          242 REGAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             CSSCHHHHHHHHHHHHHH
T ss_pred             hcCChhHHHHHHHHHHHH
Confidence            678899999998776643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.91  E-value=1.5e-07  Score=102.31  Aligned_cols=273  Identities=14%  Similarity=0.124  Sum_probs=190.8

Q ss_pred             HHHHHHHHhc---CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 042204          100 IFAAMVAGVW---SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-------YPQLQYEAAWALTN  169 (559)
Q Consensus       100 ~l~~lv~~L~---s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-------~~~~~~~a~~~L~n  169 (559)
                      .+..|-+.|.   ++++.++--|+..|.-+-++...    .     ++..|...|.+++       .+.++..|+..|+.
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3455555565   56677788888888776544211    1     4566777776543       36799999999999


Q ss_pred             HhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHH
Q 042204          170 IASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTAT  249 (559)
Q Consensus       170 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~  249 (559)
                      +..|+...       .+++.|..++.+.+..+++.|+.+||.+-..+.. .      .++..|+..+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHH
Confidence            87755321       2466788888877778888999999988433222 1      13567777765566778999999


Q ss_pred             HHHHHhhcCCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHH--hccCChhHHHHHHHhCcHHHHHHh-hCCCCC
Q 042204          250 WTLSNFCRGMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYF--LSNGKNDKIQAVIEAGVCPRLVEL-LGHRSS  325 (559)
Q Consensus       250 ~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~--l~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~  325 (559)
                      .+|..+..+.        ...++.++..|. +.++-++..++.+++-  ...++...         ++.|+.. ..+.+.
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            9999887765        234556666665 5678888888777754  33444433         3433333 345667


Q ss_pred             cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh
Q 042204          326 SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL  405 (559)
Q Consensus       326 ~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL  405 (559)
                      .+|..|+..||.+..++++         .++.++.+|.+..++.+|..|+++++.++++++.  .     .++..|..++
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~-----~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q-----SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----HHHHHHHHHc
Confidence            7999999999999877652         3456666554433999999999999999986543  1     1566778888


Q ss_pred             hcCChhHHHHHHHHHHHHhcCCC
Q 042204          406 QNAEINIKNWAAWAISNATSGGS  428 (559)
Q Consensus       406 ~~~~~~v~~~a~~aL~nl~~~~~  428 (559)
                      .+.+..|+..|+.+|+.+..+.+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCc
Confidence            89999999999999999987643

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.89  E-value=6.4e-08  Score=94.70  Aligned_cols=278  Identities=14%  Similarity=0.066  Sum_probs=165.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      ...+.+++.++++|...+....-.+..+... .++.+      =++..|.+=+++++ +-+|-.|+++|++|..  ++..
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~  137 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML  137 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence            4567888999999999999888888776443 23322      16788889999998 9999999999999987  3333


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..     +.+.+.+.|.+.++.||..|+.+..++....|+.   +  .+++..+-.++ .+.++.++.+|+.+|..++..
T Consensus       138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence            32     4567888899999999999999999999877663   2  24678888887 667788889999999999875


Q ss_pred             CCCCcHhhHhchHHHHHHhhccC---CHhHHHHHHHHHHHhccCC-hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 042204          259 MPRPIFEQVRPALPVLAQLVHSN---DKEVLTDACWALYFLSNGK-NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQT  334 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  334 (559)
                      .        ...+..++.-+...   ++..+...++.+..+...+ +.     ....+++.+...|++.++.|..+|+++
T Consensus       207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred             c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            3        11334444444332   5666666677666666443 22     123567888899999999999999999


Q ss_pred             HHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHH
Q 042204          335 IGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKN  414 (559)
Q Consensus       335 L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~  414 (559)
                      |..+...+..    .. ..++..|..+|.++ ++.+|..|+..|..+....|..++.     .-..+.+++.++|..+..
T Consensus       274 I~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t  342 (355)
T 3tjz_B          274 IVNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT  342 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred             HHhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence            9988653221    11 24566777788888 8999999999999998766665443     233466777888777766


Q ss_pred             HHHHHHH
Q 042204          415 WAAWAIS  421 (559)
Q Consensus       415 ~a~~aL~  421 (559)
                      -|+..|.
T Consensus       343 ~Aittll  349 (355)
T 3tjz_B          343 LAITTLL  349 (355)
T ss_dssp             -------
T ss_pred             HHHHHhh
Confidence            6555543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.88  E-value=4.9e-08  Score=95.52  Aligned_cols=316  Identities=12%  Similarity=0.114  Sum_probs=177.6

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204          100 IFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus       100 ~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      .+++ .+.++..  |+.....++..+-.+......-+..++  ..+.+.+++++.+++ ..++.-..-.+.+++...++.
T Consensus        27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~  102 (355)
T 3tjz_B           27 VLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV  102 (355)
T ss_dssp             HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG
T ss_pred             HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH
Confidence            4445 3455544  444444455444444433212222222  135677889999999 899999999999988853322


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                         +   =++..|.+=++++++-+|-.|+++|++|....  .-+.     ..+++-+.+ .+.++.+++.|+.+...|..
T Consensus       103 ---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~  168 (355)
T 3tjz_B          103 ---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLK  168 (355)
T ss_dssp             ---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTT
T ss_pred             ---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhc
Confidence               1   25778888889999999999999999996432  1111     234455555 67889999999999999987


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC---CCcchhhHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR---SSSVLSPALQT  334 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~  334 (559)
                      ..|    ..+.+.++.+.+++.+.++.++.+|+.++..+...+...         +..++..+...   ++-.+...++.
T Consensus       169 ~~p----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~  235 (355)
T 3tjz_B          169 CSF----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRV  235 (355)
T ss_dssp             TCH----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred             cCH----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHH
Confidence            653    345678889999999999999999999999998654322         33344444332   23334445555


Q ss_pred             HHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          335 IGHIVAGD-DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       335 L~nl~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      ++.++..+ +..     ....++.+..+|++. ++.|..+|+.++..+...+..    +. ..++..|..++.++++.+|
T Consensus       236 l~~~~~~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~nir  304 (355)
T 3tjz_B          236 ASRQLEDEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALR  304 (355)
T ss_dssp             HTCC----------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSH
T ss_pred             HHHhccccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHH
Confidence            55555544 222     235677888889998 999999999999888542222    12 2356777888899999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL  463 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l  463 (559)
                      -.|+..|..+... .|+.+.     .+-..+.+++.++|..+...|+..|
T Consensus       305 yvaLr~L~~l~~~-~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          305 YAAVRTLNKVAMK-HPSAVT-----ACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             HHHHHCC-------------------------------------------
T ss_pred             HHHHHHHHHHHHH-CcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHh
Confidence            9999999988875 333322     2556678888888888766655444

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.86  E-value=7.5e-09  Score=112.30  Aligned_cols=197  Identities=14%  Similarity=0.067  Sum_probs=149.6

Q ss_pred             chHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHH-HHhhCCCCCcchhhHHHHHHHhhcC-ChHHH
Q 042204          269 PALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRL-VELLGHRSSSVLSPALQTIGHIVAG-DDFQT  346 (559)
Q Consensus       269 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L-~~lL~~~~~~v~~~al~~L~nl~~~-~~~~~  346 (559)
                      .++| +++.|++.++..+..||++|++|+. ++...+.+...+++..+ ..+|.+++..|+..|+++|+||+.. .....
T Consensus        35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            4455 4466899999999999999999996 55566778888888765 5678889999999999999999965 35667


Q ss_pred             HHHHhCCChHHHHHHhcCCC-------------c-------hhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh
Q 042204          347 QCIINCGALPYLLVLLIHSH-------------K-------KSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ  406 (559)
Q Consensus       347 ~~~~~~g~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~  406 (559)
                      ..++..|+++.|..++....             .       ..+...++++|.+++.++.+....+...+.++.|+..|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            78899999999999985320             0       123445778889998888888888988899999999985


Q ss_pred             cC---ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH---HHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          407 NA---EINIKNWAAWAISNATSGGSHEQIKYLVREKCIK---PLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       407 ~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~---~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      +.   ..+++..|+.+|.+++.. +++....+.+.+...   .+..+.++.++. +..+...|.|++..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~  259 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTS  259 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhh
Confidence            43   358999999999999987 667777777766533   333333444443 45566777887643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.72  E-value=8.8e-07  Score=96.27  Aligned_cols=270  Identities=14%  Similarity=0.124  Sum_probs=185.4

Q ss_pred             cHHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 042204          143 VVPRFVEFLM---REDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPN--------DDIREQAVWALGN  211 (559)
Q Consensus       143 ~v~~Lv~lL~---~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~n  211 (559)
                      ++..|-..|.   +++ +.++..|+.+|+.+..+...        .++..|...|.+.+        +.++..|+..||-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3555556665   344 89999999999999986542        14667777776544        6788899999999


Q ss_pred             HhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh-ccCCHhHHHHHH
Q 042204          212 VAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV-HSNDKEVLTDAC  290 (559)
Q Consensus       212 l~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~  290 (559)
                      +...+.  ++.     ++..|...+. +.+..+...++.+|..+.-+...      ..++..|+..+ .+.+..++..++
T Consensus       464 a~~GS~--~ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSA--NIE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCC--CHH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCC--CHH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            864332  112     3567777774 33334556777888776544321      22334444433 456788999999


Q ss_pred             HHHHHhccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchh
Q 042204          291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLG-HRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKS  369 (559)
Q Consensus       291 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~  369 (559)
                      .+|+.+..+.++..         +.+++.|. +.++.+|..++.+++.-..+....       ..++.|+..+.++.+..
T Consensus       530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            99998887776554         44555554 467778888888887555544322       12444555554333788


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHh-hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcC
Q 042204          370 IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLL-QNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLL  448 (559)
Q Consensus       370 v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  448 (559)
                      +|..|+.+|+.|..++++         .++.++..| ++.++.+|..|++|++.+..+.....        +++.|..++
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--------aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--------AIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--------HHHHHHHHc
Confidence            999999999999877543         566666644 56799999999999999986532111        466778888


Q ss_pred             CCCChHHHHHHHHHHHHHHH
Q 042204          449 PCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       449 ~~~d~~v~~~~l~~l~~il~  468 (559)
                      ++.|..|+..|+.+|..+..
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHST
T ss_pred             cCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999998773

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.68  E-value=4e-06  Score=83.83  Aligned_cols=321  Identities=12%  Similarity=0.125  Sum_probs=193.4

Q ss_pred             CCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCc---hhhhhhhccC-CHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          184 HGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSP---RCRDLVLSEE-ALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       184 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---~~r~~i~~~g-~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..++..++++|+. .+.++.+..+..+.-+..++|   .....+.+.. ....+........+.-....++.+++.++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            4567788888874 778888888888888887766   2222222222 1222333222334444555666666666544


Q ss_pred             CCCCcHhhHhchHH--HHHHhhcc-CCHhHHHHHHHHHHHhccCChhHHHHHHHh--CcHHHHHHhhC----CC------
Q 042204          259 MPRPIFEQVRPALP--VLAQLVHS-NDKEVLTDACWALYFLSNGKNDKIQAVIEA--GVCPRLVELLG----HR------  323 (559)
Q Consensus       259 ~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L~~lL~----~~------  323 (559)
                      .+. .......++.  -+...|.. .+...+.-++.+|..|...+. ....+.+.  ..++.++.++.    +.      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            332 2333334444  34444544 234445567777877775433 43455543  24555554332    11      


Q ss_pred             -------CCcchhhHHHHHHHhhcCChHHHHHHHhCCCh--HHHHHHhcCCCchhHHHHHHHHHHHhhcCC----HHHHH
Q 042204          324 -------SSSVLSPALQTIGHIVAGDDFQTQCIINCGAL--PYLLVLLIHSHKKSIKNHACWTISKITAGN----REQIQ  390 (559)
Q Consensus       324 -------~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~~~~~  390 (559)
                             ..+++..++.++.-++...+ ..+.+...++.  +.|+.+++....++|-+-++.++.|+....    ...+.
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   12346778888888887544 55556555543  567777776547889999999999998754    23333


Q ss_pred             H-HHHcCCHHHHHHHhhc---CChhHHHHHHHHHHHHhc---------------------CC----C----HHHHHHHHH
Q 042204          391 A-VIDAGLIGPLINLLQN---AEINIKNWAAWAISNATS---------------------GG----S----HEQIKYLVR  437 (559)
Q Consensus       391 ~-li~~~~i~~Li~lL~~---~~~~v~~~a~~aL~nl~~---------------------~~----~----~~~~~~l~~  437 (559)
                      . ++..++ +.+++.|+.   .|+++....-.....+-.                     ..    +    .++...+.+
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            3 333444 445566653   366655443332222211                     10    1    122222222


Q ss_pred             c--CChHHHHhcCCC----------CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC
Q 042204          438 E--KCIKPLCDLLPC----------ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH  505 (559)
Q Consensus       438 ~--~~l~~L~~lL~~----------~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~  505 (559)
                      .  .++..|+++|++          .|+.+...|+.-|+.+++..+.             -+..+++.|+-+.+.+|+.|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-------------gr~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-------------hhHHHHHcCcHHHHHHHhcC
Confidence            2  247888888863          4788899999999998876543             36678999999999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 042204          506 ENNEIHEKSVKILETY  521 (559)
Q Consensus       506 ~~~~v~~~a~~il~~~  521 (559)
                      +|++|+..|...++++
T Consensus       459 ~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          459 SDSRVKYEALKATQAI  474 (480)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.67  E-value=1.2e-07  Score=88.94  Aligned_cols=185  Identities=14%  Similarity=0.210  Sum_probs=141.8

Q ss_pred             HHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHHHHhccCChhHHHHHHH
Q 042204          231 PLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWALYFLSNGKNDKIQAVIE  309 (559)
Q Consensus       231 ~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  309 (559)
                      .+...+ .+.+...++.++..|..++.+.+.........+++.|..++. +.+..++..++.+++.++..-.......+.
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            366666 678899999999999999887432111223567888889994 899999999999999999543332223222


Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHH
Q 042204          310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQ  388 (559)
Q Consensus       310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~  388 (559)
                       .+++.|+..+.+.+..+|..|..+|..++.....  .     .+++.+...|++. ++.+|..++..|..+... .++.
T Consensus        98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence             4789999999999999999999999999875431  1     3577888999988 999999999999997543 3331


Q ss_pred             -HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          389 -IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       389 -~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                       ....+. .++|.|..++.+.++++|..|..++..+...
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence             122333 3889999999999999999999999998864

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.66  E-value=6.9e-06  Score=70.04  Aligned_cols=216  Identities=15%  Similarity=0.162  Sum_probs=164.3

Q ss_pred             hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHHHHhCCCch
Q 042204          140 QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL-ASPNDDIREQAVWALGNVAGDSPR  218 (559)
Q Consensus       140 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~  218 (559)
                      +..++..++.+|+++- ..+|..|+.++..++..-++....+     +..|+.++ +++...+......++|.++...|+
T Consensus        30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            4457889999998887 6999999999999999877766554     34566665 456677767788999999977776


Q ss_pred             hhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhcc
Q 042204          219 CRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSN  298 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  298 (559)
                      .-+.     .++.+..-. .-.++.++.+..++|-.+.+..|    ....+++.-+..++.++|..-+..|+..++-+..
T Consensus       104 ~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          104 LVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            3221     244444444 33488999999999999998764    3446677778888998898778888888888776


Q ss_pred             CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204          299 GKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI  378 (559)
Q Consensus       299 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L  378 (559)
                      +.....     .-.+|+|..+|.+.+.-||..|..+|+++++-++.....      +..-+.-++.. +..+++..-..|
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHHHHHHHHHH
Confidence            555332     347899999999999999999999999999999875542      23445556777 788888888888


Q ss_pred             HHhhc
Q 042204          379 SKITA  383 (559)
Q Consensus       379 ~nl~~  383 (559)
                      +.++.
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.65  E-value=1.9e-06  Score=76.79  Aligned_cols=187  Identities=15%  Similarity=0.141  Sum_probs=149.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.+..+...|+..|+..+..++..+.++++.. +......+-..++|.+++++.+.+ ..+...|++||..+..+.+-..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence            47788999999999999999999999999874 344444444568999999999888 8999999999999999765554


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      ..+..  ++.+|..++.++++-+++.++..++.+---++       ...++..+..++ .+.+..++..++.++.+++..
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence            44443  57789999999999999999999999832221       112467788888 889999999999999999986


Q ss_pred             CCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204          259 MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG  299 (559)
Q Consensus       259 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  299 (559)
                      ..++  .....++.-+-.++++.|+.++..|+.++-.+...
T Consensus       181 S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          181 SADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             CSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             cCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            5222  23345556677889999999999999999998854

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.64  E-value=1.7e-07  Score=88.00  Aligned_cols=186  Identities=13%  Similarity=0.166  Sum_probs=140.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH
Q 042204          188 PIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV  267 (559)
Q Consensus       188 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  267 (559)
                      +.+.+.+.+.+...|..|+..|..++...+.....- -..+++.+...+.++.+..++..++.++..|+..-...-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            457788889999999999999999986532211000 0124556666663367888999999999999975422223455


Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC-hH-H
Q 042204          268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGD-DF-Q  345 (559)
Q Consensus       268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~-~  345 (559)
                      ..++|.++..+.+.++.++..++.+|..+.....  ..     .+++.+...|.+.++.++..++..|+.+.... +. .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            7789999999999999999999999999986543  11     36788999999999999999999999975443 22 1


Q ss_pred             HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      ....+. .+++.|..+|.+. ++.+|..|..+++.++.
T Consensus       170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            122233 5789999999988 99999999999999875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.55  E-value=3.8e-08  Score=82.80  Aligned_cols=120  Identities=17%  Similarity=0.177  Sum_probs=92.5

Q ss_pred             hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHH
Q 042204          310 AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQI  389 (559)
Q Consensus       310 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  389 (559)
                      ...++.+..+|.++++.+|..|+++|+.+...            .++.|..+|.++ ++.+|..|+|+|+++.  ++.  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~--~~~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNE-DWRIRGAAAWIIGNFQ--DER--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCS-CHHHHHHHHHHHGGGC--SHH--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCC-CHHHHHHHHHHHHhcC--CHH--
Confidence            35678899999999999999999999877431            258899999988 9999999999999984  332  


Q ss_pred             HHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHH
Q 042204          390 QAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN  465 (559)
Q Consensus       390 ~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~  465 (559)
                             .++.|+.++.++++.+|..|+++|.++..   ++         .++.|..+++++++.++..+..+|.+
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   47888999999999999999999999852   22         46788888999999999999988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.50  E-value=2.3e-08  Score=84.16  Aligned_cols=121  Identities=19%  Similarity=0.182  Sum_probs=93.7

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204          141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR  220 (559)
Q Consensus       141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  220 (559)
                      ...++.++.+|++++ +.+|..|+++|+.+..            ..++.|+.+|.++++.+|..|+|+|+++..      
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence            456788999999888 8999999999987754            136899999999999999999999999842      


Q ss_pred             hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204          221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL  296 (559)
Q Consensus       221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  296 (559)
                           ...++.|+..+ .+.++.++..++|+|.++..          ...++.|..+++++++.++..++++|..+
T Consensus        72 -----~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -----ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 12478888888 67888999999999999862          35788899999999999999999998754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.50  E-value=8.7e-07  Score=83.21  Aligned_cols=191  Identities=9%  Similarity=0.075  Sum_probs=139.4

Q ss_pred             HHHHhchhhhHhHHHHHHHHHHH-hhcCCCCCc--HhhHhchHHHHHHhh-ccCCHhHHHHHHHHHHHhccCCh-hHHH-
Q 042204          232 LLAQLNEHAKLSMLRTATWTLSN-FCRGMPRPI--FEQVRPALPVLAQLV-HSNDKEVLTDACWALYFLSNGKN-DKIQ-  305 (559)
Q Consensus       232 Ll~ll~~~~~~~~~~~a~~~L~n-L~~~~~~~~--~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~-~~~~-  305 (559)
                      +...+ .+.+..-++.++..|.. ++.+.+...  ......++..|...+ ++.+..++..|+.+|+.++.+-. ..++ 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34445 67788889999999999 886543322  222246688888889 68899999999999999985332 1222 


Q ss_pred             HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204          306 AVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN  385 (559)
Q Consensus       306 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  385 (559)
                      .... .+++.+++.+++....|+..+..++-.++...+.......-..+++.|...|++. ++.+|.+++.+|..++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            2222 3789999999998889999988888888864321100000003567888999999 9999999999999998632


Q ss_pred             H---HHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 042204          386 R---EQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS  425 (559)
Q Consensus       386 ~---~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~  425 (559)
                      +   ......+...++|.|.+++.+.+.++|..|..++..+..
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2   444455534599999999999999999999999998875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.49  E-value=1.5e-05  Score=87.76  Aligned_cols=303  Identities=14%  Similarity=0.155  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc--
Q 042204           98 LEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS--  175 (559)
Q Consensus        98 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~--  175 (559)
                      ...+..+++.+...+......++..+..++.......   .+..+++..+.+.+.+.. ..  +.|+.++..|+....  
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~   86 (986)
T 2iw3_A           13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLS   86 (986)
T ss_dssp             HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCC
T ss_pred             HHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCC
Confidence            3466778888887656666778888888766431111   111367888888888765 23  899999999995321  


Q ss_pred             -hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          176 -EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       176 -~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                       ..-..++  +.+|.++..+.+....|+..|..++..++..-+...-    ...++.|+..+......+.+..++.++..
T Consensus        87 ~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~  160 (986)
T 2iw3_A           87 PSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSA  160 (986)
T ss_dssp             TTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence             2222333  6899999999999999999988888888754333211    23578888888555578899999999999


Q ss_pred             hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC-ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204          255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG-KNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ  333 (559)
Q Consensus       255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  333 (559)
                      |+...|.........++|.+.+.+.+..++|...|..++..+|.. .+..+     ...+|.|++.+.+++.  ...++.
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~  233 (986)
T 2iw3_A          161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVH  233 (986)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHH
T ss_pred             HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHH
Confidence            998654444445688999999999999999999999988887742 11112     1468999999987743  445566


Q ss_pred             HHHHhhcCCh--HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc--CCHHHHHHHHHcCCHHHHHHHhhc-C
Q 042204          334 TIGHIVAGDD--FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA--GNREQIQAVIDAGLIGPLINLLQN-A  408 (559)
Q Consensus       334 ~L~nl~~~~~--~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~li~~~~i~~Li~lL~~-~  408 (559)
                      .|+.-..-..  .-+-.+    .+|.|..-|... ...+++.++-++.|+|.  .+|.....++.. ++|.|-+.... .
T Consensus       234 ~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~  307 (986)
T 2iw3_A          234 LLGATTFVAEVTPATLSI----MVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIA  307 (986)
T ss_dssp             HHTTCCCCSCCCHHHHHH----HHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCC
T ss_pred             HhhcCeeEeeecchhHHH----HHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccC
Confidence            6654432221  111112    357777778777 88899999999999997  678877777654 78888777654 5


Q ss_pred             ChhHHHHHHHHHHHHhc
Q 042204          409 EINIKNWAAWAISNATS  425 (559)
Q Consensus       409 ~~~v~~~a~~aL~nl~~  425 (559)
                      +|++|..|..|+..+..
T Consensus       308 ~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          308 DPEAREVTLRALKTLRR  324 (986)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            89999988888887743

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.47  E-value=8.6e-07  Score=83.26  Aligned_cols=194  Identities=10%  Similarity=0.102  Sum_probs=140.8

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-HhCCCchhhhhhhc-cCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCC-CCcH-
Q 042204          189 IFVKLLASPNDDIREQAVWALGN-VAGDSPRCRDLVLS-EEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMP-RPIF-  264 (559)
Q Consensus       189 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~r~~i~~-~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~-~~~~-  264 (559)
                      .+...+.+.+..-|..|+..|.. ++...+.......+ ...+..|...+..+.+..++..++.++..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35567788999999999999999 87543332100011 12455666666566788889999999999997653 3333 


Q ss_pred             hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-
Q 042204          265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD-  343 (559)
Q Consensus       265 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-  343 (559)
                      .....++|.++..+.+..+.|+..+..++-.++...+.....-.-..+++.|...|.+.++.++..++.+|+.++.... 
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            4567789999999999999999998888888875332110000001267889999999999999999999999986554 


Q ss_pred             --HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          344 --FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       344 --~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                        ......+...+++.|..++.+. ++.+|..|..+++.++.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence              2222334247899999999998 99999999999998874

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.32  E-value=0.00023  Score=71.21  Aligned_cols=323  Identities=13%  Similarity=0.090  Sum_probs=192.2

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc---hhHHHHHhCCCH-HHHHH-hhCCCCHHHHHHHHHHHHHHhCCC
Q 042204          142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS---EDTKVVIDHGAV-PIFVK-LLASPNDDIREQAVWALGNVAGDS  216 (559)
Q Consensus       142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~g~i-~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~  216 (559)
                      .++..++++|.....+++....+..+..+...++   .....+.+..-. ..+.. ++..++.-....+..++..++...
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            4678888988877668888888888888888665   333343443322 22333 344445555566666666665333


Q ss_pred             chhhhhhhccCCHH--HHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhh--HhchHHHHHHhhcc------------
Q 042204          217 PRCRDLVLSEEALI--PLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ--VRPALPVLAQLVHS------------  280 (559)
Q Consensus       217 ~~~r~~i~~~g~l~--~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~--~~~~l~~L~~lL~~------------  280 (559)
                      +...+.+.  ..+.  -++..|....+.+....++.+|..|.+.+..+....  ....+|.++.++..            
T Consensus       157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~  234 (480)
T 1ho8_A          157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  234 (480)
T ss_dssp             TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence            22111110  0112  244444322223334568888888887653332221  12345666543321            


Q ss_pred             ---C--CHhHHHHHHHHHHHhccCChhHHHHHHHhCcH--HHHHHhhCC-CCCcchhhHHHHHHHhhcCCh----HH-HH
Q 042204          281 ---N--DKEVLTDACWALYFLSNGKNDKIQAVIEAGVC--PRLVELLGH-RSSSVLSPALQTIGHIVAGDD----FQ-TQ  347 (559)
Q Consensus       281 ---~--d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l--~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~----~~-~~  347 (559)
                         +  ..+++..++-+++-++.. ++..+.+...++.  +.|+.+++. ..+++..-++.++.|+.....    .. .+
T Consensus       235 ~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          235 TNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence               1  255678888888888854 3455666666643  566666665 467788889999999998652    11 22


Q ss_pred             HHHhCCChHHHHHHhcCC--CchhHHHHHHHHHHHhhc-----------------C---------CHHHHHH----HHH-
Q 042204          348 CIINCGALPYLLVLLIHS--HKKSIKNHACWTISKITA-----------------G---------NREQIQA----VID-  394 (559)
Q Consensus       348 ~~~~~g~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~-----------------~---------~~~~~~~----li~-  394 (559)
                      .++..++++ ++..|...  .++++....-+....+-.                 |         ++.....    +-+ 
T Consensus       314 ~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~  392 (480)
T 1ho8_A          314 LLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  392 (480)
T ss_dssp             HHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence            333344544 55555332  155554433222222111                 0         1111111    111 


Q ss_pred             -cCCHHHHHHHhhc----------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204          395 -AGLIGPLINLLQN----------AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL  463 (559)
Q Consensus       395 -~~~i~~Li~lL~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l  463 (559)
                       ..++..|+++|.+          .|+.+..-||.=|+.++.. -|+....+-+.|+=..++.++.++|++|+..|+.++
T Consensus       393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av  471 (480)
T 1ho8_A          393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT  471 (480)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence             2358899999973          3678889999999999987 456666666778888999999999999999999999


Q ss_pred             HHHHHh
Q 042204          464 ENILKV  469 (559)
Q Consensus       464 ~~il~~  469 (559)
                      ..++..
T Consensus       472 Qklm~~  477 (480)
T 1ho8_A          472 QAIIGY  477 (480)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998843

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.30  E-value=0.00026  Score=79.79  Aligned_cols=339  Identities=11%  Similarity=0.108  Sum_probs=185.8

Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---c--hhHHHHHh
Q 042204          110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFV-EFLMREDYPQLQYEAAWALTNIASKT---S--EDTKVVID  183 (559)
Q Consensus       110 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv-~lL~~~~~~~~~~~a~~~L~nl~~~~---~--~~~~~i~~  183 (559)
                      +.+.+....++.++..+++   --+...+++.++++.+. .+|..   ++++..|+.||..+.+..   +  +....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            3455677778888888766   24567788899999999 88853   789999999999998732   2  11111111


Q ss_pred             --CCCHHHH--------------HHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc----CC----HHHHHHHhchh
Q 042204          184 --HGAVPIF--------------VKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE----EA----LIPLLAQLNEH  239 (559)
Q Consensus       184 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~----g~----l~~Ll~ll~~~  239 (559)
                        .+.++.+              ...-...+.+..+..+..+..+...   ....+...    +.    +..++..- ..
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~---~~~li~~~~~~~~~l~~~l~~Ll~~~-~~  355 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR---NRALLESDESLRELLLNAHQYLIQLS-KI  355 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH---HGGGGTSCGGGHHHHHHHHHHHHHHT-TS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHH---HHHHHhCCcchhHHHHHHHHHHHHhh-CC
Confidence              0111111              1111223466666666666655421   11222211    11    12233222 34


Q ss_pred             hhHhHHHHHHHHHHHhhcCC--CCCcHhhH----hchHHHHHHhhccCC--------------------HhH-HH-HHHH
Q 042204          240 AKLSMLRTATWTLSNFCRGM--PRPIFEQV----RPALPVLAQLVHSND--------------------KEV-LT-DACW  291 (559)
Q Consensus       240 ~~~~~~~~a~~~L~nL~~~~--~~~~~~~~----~~~l~~L~~lL~~~d--------------------~~v-~~-~a~~  291 (559)
                      .+.++...++...+.+....  ........    ..+++.++.-+..+.                    ++. .- ..-.
T Consensus       356 ~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd  435 (1023)
T 4hat_C          356 EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE  435 (1023)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHH
Confidence            46667666665555555421  11112222    334444444333221                    010 00 1112


Q ss_pred             HHHHhccCCh-hHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC----
Q 042204          292 ALYFLSNGKN-DKIQAVIEAGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH----  364 (559)
Q Consensus       292 ~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~----  364 (559)
                      +|.+++.-.. +..+.     +++.+.+.+.+  .++..++.+++++|.|+.+.......-.-..+++.|+.++.+    
T Consensus       436 ~L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~  510 (1023)
T 4hat_C          436 VLVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGK  510 (1023)
T ss_dssp             HHHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred             HHHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccC
Confidence            3333332111 11111     23445555554  568899999999999998765432222222567788888864    


Q ss_pred             -CCchhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHH-------
Q 042204          365 -SHKKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIK-------  433 (559)
Q Consensus       365 -~~~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~-------  433 (559)
                       + ...++..++|+++.++.   ..++....     ++..|+..+.++++.++..|++++.+++..+......       
T Consensus       511 d~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~  584 (1023)
T 4hat_C          511 DN-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE  584 (1023)
T ss_dssp             HH-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred             cc-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence             3 44566788999998875   23443333     4555777777778899999999999999853322210       


Q ss_pred             -HHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204          434 -YLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE  471 (559)
Q Consensus       434 -~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~  471 (559)
                       ++-  .++..+...+..-+++-+..+.+++..+++...
T Consensus       585 p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          585 PFIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             CHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             hhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence             111  123333444444566667788888888876543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.26  E-value=0.00061  Score=77.01  Aligned_cols=386  Identities=10%  Similarity=0.077  Sum_probs=216.5

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHhccCC---------CCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 042204          101 FAAMVAGVWS--DDNNLQLEATTKFRKLLSIE---------RSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN  169 (559)
Q Consensus       101 l~~lv~~L~s--~~~~~~~~a~~~l~~lls~~---------~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~n  169 (559)
                      ...+...+.+  .+..++..|+..|++.+...         -++.....++..+    +..+.+.+ +.+|..++.+++.
T Consensus        37 ~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~l----l~~l~~~~-~~ir~~l~~~ia~  111 (960)
T 1wa5_C           37 GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEI----VPLMISLP-NNLQVQIGEAISS  111 (960)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHH----HHHHHHSC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHH----HHHHHhCC-HHHHHHHHHHHHH
Confidence            3455665543  46789999999999987531         1222333444444    44444455 7999999999999


Q ss_pred             HhcCC-chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc------hhhhhh--hccCCHHHHHHHh----
Q 042204          170 IASKT-SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP------RCRDLV--LSEEALIPLLAQL----  236 (559)
Q Consensus       170 l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------~~r~~i--~~~g~l~~Ll~ll----  236 (559)
                      |+..+ ++.-     .+.++.|++.+.+++...++.++.+|..++....      +.+..+  .-....++++.++    
T Consensus       112 ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~  186 (960)
T 1wa5_C          112 IADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVD  186 (960)
T ss_dssp             HHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98731 1111     3578999999998888899999999999986321      111111  0011234444433    


Q ss_pred             ---chh-hh-------HhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccC------C---------HhHHHHH
Q 042204          237 ---NEH-AK-------LSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN------D---------KEVLTDA  289 (559)
Q Consensus       237 ---~~~-~~-------~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~------d---------~~v~~~a  289 (559)
                         ... .+       ..+...++.++.++.... |..........++.+..++...      |         ..++..+
T Consensus       187 ~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~  266 (960)
T 1wa5_C          187 EQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSI  266 (960)
T ss_dssp             HHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHH
Confidence               111 11       133344666666665433 2221222344556666665321      1         2467888


Q ss_pred             HHHHHHhccCChhHHHHHHHhCcHHHHHHhhC-----CCCCcchhhHHHHHHHhhcCChHHHHHHHh-CCChHH-----H
Q 042204          290 CWALYFLSNGKNDKIQAVIEAGVCPRLVELLG-----HRSSSVLSPALQTIGHIVAGDDFQTQCIIN-CGALPY-----L  358 (559)
Q Consensus       290 ~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~g~l~~-----L  358 (559)
                      +.++..+.....+.....+. .+++.....+.     ..++.++..++..+..++..... . .++. ...++.     +
T Consensus       267 ~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~-~-~~~~~~~~l~~li~~~i  343 (960)
T 1wa5_C          267 QELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY-F-EIFNNESAMNNITEQII  343 (960)
T ss_dssp             HHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH-H-GGGCSHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH-H-HHHcCchHHHHHHHHHh
Confidence            88888887555544332222 34555555553     23456777888888887753221 1 1111 012222     2


Q ss_pred             HHHhcC----------------------CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh------cCCh
Q 042204          359 LVLLIH----------------------SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ------NAEI  410 (559)
Q Consensus       359 ~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~------~~~~  410 (559)
                      +..+.-                      ......|..|..+|..++...++.+   +.. +++.+...+.      +.++
T Consensus       344 ~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~~-~l~~i~~~l~~~~~~~~~~w  419 (960)
T 1wa5_C          344 LPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TNI-FLAHMKGFVDQYMSDPSKNW  419 (960)
T ss_dssp             HHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HHH-HHHHHHHHHHHHHC----CH
T ss_pred             HHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HHH-HHHHHHHHHHHhccCcchhH
Confidence            223211                      0012567788888888876433322   111 3344444454      4577


Q ss_pred             hHHHHHHHHHHHHhcCCC-H----H------HHHHHHHcCChHHHHhcCCCC---ChHHHHHHHHHHHHHHHhhhhhccc
Q 042204          411 NIKNWAAWAISNATSGGS-H----E------QIKYLVREKCIKPLCDLLPCA---NPTIVTVCLKGLENILKVGEAEKNM  476 (559)
Q Consensus       411 ~v~~~a~~aL~nl~~~~~-~----~------~~~~l~~~~~l~~L~~lL~~~---d~~v~~~~l~~l~~il~~~~~~~~~  476 (559)
                      ..+..|+.+++.++.++. .    .      ....++..-+++.|    .++   .+.++..+++++..+...-   .  
T Consensus       420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l----~~~~~~~p~vr~~a~~~lg~~~~~~---~--  490 (960)
T 1wa5_C          420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL----TSNNIPHIILRVDAIKYIYTFRNQL---T--  490 (960)
T ss_dssp             HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH----HCSSCSCHHHHHHHHHHHHHTGGGS---C--
T ss_pred             HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh----cCCCCCCceehHHHHHHHHHHHhhC---C--
Confidence            899999999999986421 0    0      22222222233333    334   8899999999999876431   0  


Q ss_pred             ccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCC
Q 042204          477 DTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCG  524 (559)
Q Consensus       477 ~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~  524 (559)
                             .++..     ..++.+.....+++..|+..|...+.+|...
T Consensus       491 -------~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          491 -------KAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             -------HHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence                   01111     1245555555677899999999999998764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.22  E-value=0.0005  Score=77.75  Aligned_cols=344  Identities=9%  Similarity=0.037  Sum_probs=195.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc------
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS------  175 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~------  175 (559)
                      ..++..+.+.+..++...+..+..++..+-+...     .+++|.|++.+++++ +..+..++.+|..++....      
T Consensus        88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~  161 (960)
T 1wa5_C           88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD  161 (960)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            3566666666688888888888888765311111     458899999998877 7889999999999987321      


Q ss_pred             hhHHHHH--hCCCHHHHHH-------hhCCCCH---------HHHHHHHHHHHHHhC-CCchh-hhhhhccCCHHHHHHH
Q 042204          176 EDTKVVI--DHGAVPIFVK-------LLASPND---------DIREQAVWALGNVAG-DSPRC-RDLVLSEEALIPLLAQ  235 (559)
Q Consensus       176 ~~~~~i~--~~g~i~~L~~-------lL~~~~~---------~v~~~a~~~L~nl~~-~~~~~-r~~i~~~g~l~~Ll~l  235 (559)
                      +.+..+.  -....+.+++       .+.++..         ++...++.++.++.. +.+.. .+.+  ...++.+...
T Consensus       162 ~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~  239 (960)
T 1wa5_C          162 ELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKY  239 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHH
Confidence            2222110  1122343333       2444321         223346666666542 22221 1111  1122333444


Q ss_pred             hchh-----hh---------HhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-----cCCHhHHHHHHHHHHHh
Q 042204          236 LNEH-----AK---------LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-----SNDKEVLTDACWALYFL  296 (559)
Q Consensus       236 l~~~-----~~---------~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~l  296 (559)
                      +...     .+         ..+++.++.+|..+....+..-......+++.+..++.     ..++.++..++..+..+
T Consensus       240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~  319 (960)
T 1wa5_C          240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV  319 (960)
T ss_dssp             HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred             HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence            4220     11         24567778888877754322112233455566666664     34678888899888887


Q ss_pred             ccCChhHHHHHHH-hCcHH-----HHHHhhC-----------------------CCCCcchhhHHHHHHHhhcCChHHHH
Q 042204          297 SNGKNDKIQAVIE-AGVCP-----RLVELLG-----------------------HRSSSVLSPALQTIGHIVAGDDFQTQ  347 (559)
Q Consensus       297 ~~~~~~~~~~~~~-~g~l~-----~L~~lL~-----------------------~~~~~v~~~al~~L~nl~~~~~~~~~  347 (559)
                      +.... . ..++. ...++     .++..|.                       +.....|..|..+|..++......  
T Consensus       320 ~~~~~-~-~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~--  395 (960)
T 1wa5_C          320 TRIPK-Y-FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL--  395 (960)
T ss_dssp             HTSHH-H-HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred             hCcHh-H-HHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence            74322 1 11111 11222     2223331                       111246667777887777654421  


Q ss_pred             HHHhCCChHHHHHHhc------CCCchhHHHHHHHHHHHhhcC---CH---H------HHHHHHHcCCHHHHHHHhhcC-
Q 042204          348 CIINCGALPYLLVLLI------HSHKKSIKNHACWTISKITAG---NR---E------QIQAVIDAGLIGPLINLLQNA-  408 (559)
Q Consensus       348 ~~~~~g~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~---~~---~------~~~~li~~~~i~~Li~lL~~~-  408 (559)
                       ++. -+++.+...+.      +. +...|..|..+++.++.+   ..   .      ....++.    ..++..+.++ 
T Consensus       396 -v~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~  468 (960)
T 1wa5_C          396 -VTN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNN  468 (960)
T ss_dssp             -HHH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSS
T ss_pred             -HHH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCC
Confidence             211 23445555554      34 667888899999999752   11   0      2222221    1233334555 


Q ss_pred             --ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          409 --EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       409 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                        ++.+|..|+|+++.++..-.++....     +++.++..|.++++.|+..|..+|.+++..
T Consensus       469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          469 IPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence              88999999999999988654443332     677888888888899999999999998864

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.20  E-value=0.00015  Score=82.16  Aligned_cols=325  Identities=10%  Similarity=0.045  Sum_probs=181.5

Q ss_pred             HHHHHHHHHHHHhccC-CCCchHHHHHhcCcHHHHHHhhc---------------C-CCCHHHHHHHHHHHHHHhcCCch
Q 042204          114 NLQLEATTKFRKLLSI-ERSPPIEEVIQSGVVPRFVEFLM---------------R-EDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus       114 ~~~~~a~~~l~~lls~-~~~~~~~~ii~~g~v~~Lv~lL~---------------~-~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      ..+..++.++...+.. .-+..    ....+++.+.. |.               + ++ ++++..|+.++..+....+.
T Consensus       204 ~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~  277 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC  277 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred             hHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence            6777788888776652 11111    33456676766 41               1 33 78999999999999984221


Q ss_pred             -hHHHHHhCCCHHHHHHh-------hCCCC---HHHHHHHHHHHHHHhCCCchhhhhhh---------ccCCHHHHHHHh
Q 042204          177 -DTKVVIDHGAVPIFVKL-------LASPN---DDIREQAVWALGNVAGDSPRCRDLVL---------SEEALIPLLAQL  236 (559)
Q Consensus       177 -~~~~i~~~g~i~~L~~l-------L~~~~---~~v~~~a~~~L~nl~~~~~~~r~~i~---------~~g~l~~Ll~ll  236 (559)
                       .+...+. .+++.++.+       +...+   .+.....+..+..++...+.   .+.         ..+.+..++..+
T Consensus       278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~l  353 (971)
T 2x1g_F          278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHST---LLLSGITSADPELSILVHRIVQEI  353 (971)
T ss_dssp             GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHH---HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH---HHHHHhccCcccccHHHHHHHHHH
Confidence             1111111 123333332       23334   26666667777666533221   111         111233333333


Q ss_pred             ch--------hhhHhHHHHHHHHHHHhhcC--------CCCCcH----hhHhchHHHHHHhhccCC--------H-----
Q 042204          237 NE--------HAKLSMLRTATWTLSNFCRG--------MPRPIF----EQVRPALPVLAQLVHSND--------K-----  283 (559)
Q Consensus       237 ~~--------~~~~~~~~~a~~~L~nL~~~--------~~~~~~----~~~~~~l~~L~~lL~~~d--------~-----  283 (559)
                      ..        ..+..+...+++.+..++..        +.....    .....+++.++..+..++        +     
T Consensus       354 l~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~  433 (971)
T 2x1g_F          354 LHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLEC  433 (971)
T ss_dssp             HHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHH
T ss_pred             HHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHH
Confidence            21        24677888899888888651        111111    122444555554443221        1     


Q ss_pred             --hHHHHHHHHHHHhccCChh-HHHHHHHhCcHHHHHHhhCC-----CCCcchhhHHHHHHHhhcCChHHHHHHHhCCCh
Q 042204          284 --EVLTDACWALYFLSNGKND-KIQAVIEAGVCPRLVELLGH-----RSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL  355 (559)
Q Consensus       284 --~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l  355 (559)
                        ..+..+..++..++....+ ....     +++.+...+.+     .++..++.|+.+++.++.+......     ..+
T Consensus       434 f~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l  503 (971)
T 2x1g_F          434 FRCYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQI  503 (971)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHH
Confidence              2445566666666643331 1111     22333333332     5778899999999999887653321     233


Q ss_pred             HHHHHHh---c--CCCchhHHHHHHHHHHHhhc--C-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 042204          356 PYLLVLL---I--HSHKKSIKNHACWTISKITA--G-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG  427 (559)
Q Consensus       356 ~~L~~lL---~--~~~~~~v~~~a~~~L~nl~~--~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~  427 (559)
                      +.++.++   .  .+ ++.+|..++|+++.++.  . .++....     +++.|+..| +  +.++..|++++.+++...
T Consensus       504 ~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~~-----vl~~l~~~l-~--~~v~~~A~~al~~l~~~~  574 (971)
T 2x1g_F          504 PRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIPP-----AINLLVRGL-N--SSMSAQATLGLKELCRDC  574 (971)
T ss_dssp             HHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHHH-----HHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence            3333333   2  24 78999999999999975  1 2222222     466677667 2  789999999999999764


Q ss_pred             CHHHHHHHHHcCChHHHHhcCCC--CChHHHHHHHHHHHHHHHh
Q 042204          428 SHEQIKYLVREKCIKPLCDLLPC--ANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       428 ~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~~l~~l~~il~~  469 (559)
                      ......++  ..++..|..++..  -+.+.+..+++++..++..
T Consensus       575 ~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          575 QLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            43333332  2366677777766  3578889999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.13  E-value=0.00023  Score=78.42  Aligned_cols=300  Identities=14%  Similarity=0.139  Sum_probs=204.0

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc---hhhhhh
Q 042204          147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP---RCRDLV  223 (559)
Q Consensus       147 Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~r~~i  223 (559)
                      +++-+...+ ..-+..|+..+.++..+.....  .+..+++..|.+.+.+....  +.|+.++..||....   ..--.+
T Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            444455433 3445667777777766432211  11236778888888775444  999999999995432   221222


Q ss_pred             hccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccC-CHhHHHHHHHHHHHhccCChh
Q 042204          224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSN-DKEVLTDACWALYFLSNGKND  302 (559)
Q Consensus       224 ~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~  302 (559)
                      +  +.++.++..+ .+....++..|..++..+...-+.   ..+..++|.|+..|.+. ....+..|+.++..++...++
T Consensus        94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence            2  3567777776 455667888888888777765432   23377899999988755 689999999999999976555


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH-HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHh
Q 042204          303 KIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF-QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKI  381 (559)
Q Consensus       303 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl  381 (559)
                      +...-+ ..++|.+.+.+-+..++|...|..++..+|..-+. ..     ...+|.|++.+.++ +.  .-++...|+.-
T Consensus       168 ~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p-~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          168 QVALRM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADP-TE--VPETVHLLGAT  238 (986)
T ss_dssp             HHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCT-TH--HHHHHHHHTTC
T ss_pred             HHHHhc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcCh-hh--hHHHHHHhhcC
Confidence            443322 35889999999999999999999999888762211 11     15688999999877 33  44455555544


Q ss_pred             hc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHcCChHHHHhcCC-CCChHHH
Q 042204          382 TA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG-SHEQIKYLVREKCIKPLCDLLP-CANPTIV  456 (559)
Q Consensus       382 ~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~  456 (559)
                      +.   -+......     ++|.|.+-|......+++.++..+.||+.-- +|.....++ ..++|.+....+ ..+|+++
T Consensus       239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r  312 (986)
T 2iw3_A          239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAR  312 (986)
T ss_dssp             CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHH
T ss_pred             eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHH
Confidence            32   12222221     5778888888888999999999999999743 555555533 357788877665 4799999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 042204          457 TVCLKGLENILKVGEA  472 (559)
Q Consensus       457 ~~~l~~l~~il~~~~~  472 (559)
                      ..+..++..+.+.+..
T Consensus       313 ~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          313 EVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999988777654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.10  E-value=0.00014  Score=82.37  Aligned_cols=301  Identities=13%  Similarity=0.104  Sum_probs=159.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh---C--CCCHHHHHHHHHHHHHHhCCCchhhhhhhccCC
Q 042204          154 EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL---A--SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA  228 (559)
Q Consensus       154 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~  228 (559)
                      .+ ...++.|+.+++.++.+-.+...     ..++.++.++   .  ++++.++..++|+++.++..-....+.+.  .+
T Consensus       476 ~~-w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~v  547 (971)
T 2x1g_F          476 TH-WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PA  547 (971)
T ss_dssp             TC-CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HH
T ss_pred             Cc-HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HH
Confidence            45 58899999999999986443221     2333333332   3  35899999999999998742111111111  13


Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCCh-hHHH
Q 042204          229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS--NDKEVLTDACWALYFLSNGKN-DKIQ  305 (559)
Q Consensus       229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~-~~~~  305 (559)
                      ++.++..+    ++.+...|++++.++|+............++..+..++..  -+...+..++.+++.++...+ +...
T Consensus       548 l~~l~~~l----~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~  623 (971)
T 2x1g_F          548 INLLVRGL----NSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP  623 (971)
T ss_dssp             HHHHHHHH----HSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHHHh----ChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence            44445444    2678999999999999764322223345666677777776  357888899999998875421 2222


Q ss_pred             HHHHh---CcHHHHHHhhCCC--CCcchhh---HHHHHHHhhcC--C-----------hHHHHHHHhCCChHHHHHHhcC
Q 042204          306 AVIEA---GVCPRLVELLGHR--SSSVLSP---ALQTIGHIVAG--D-----------DFQTQCIINCGALPYLLVLLIH  364 (559)
Q Consensus       306 ~~~~~---g~l~~L~~lL~~~--~~~v~~~---al~~L~nl~~~--~-----------~~~~~~~~~~g~l~~L~~lL~~  364 (559)
                      ..+..   -++..+...+...  ++..+..   ++..|+.+...  .           ......+ -..+++.+..++..
T Consensus       624 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~  702 (971)
T 2x1g_F          624 KYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEM  702 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHh
Confidence            22221   1233333444333  2222233   33344433321  0           0011111 22577877777753


Q ss_pred             C-CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-C-HH---HHHHHHHc
Q 042204          365 S-HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG-S-HE---QIKYLVRE  438 (559)
Q Consensus       365 ~-~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~-~-~~---~~~~l~~~  438 (559)
                      . .+..+.+.++++++.++..-.+....++.. +++.|+..+.....   ..+++.++.++..- . +.   ....+.. 
T Consensus       703 ~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~-~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~-  777 (971)
T 2x1g_F          703 WVEEIDVLEAACSAMKHAITNLRSSFQPMLQD-LCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLR-  777 (971)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH-HHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHH-
T ss_pred             ccccHHHHHHHHHHHHHHHHhhhhhccccHHH-HHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHH-
Confidence            2 267899999999999865211111111111 33344443333221   34677777776521 2 11   1222222 


Q ss_pred             CChHHHHhcCCC-------CChHHHHHHHHHHHHHHHhhhh
Q 042204          439 KCIKPLCDLLPC-------ANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       439 ~~l~~L~~lL~~-------~d~~v~~~~l~~l~~il~~~~~  472 (559)
                      .++..+..++..       .+++++......+..++.....
T Consensus       778 ~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~  818 (971)
T 2x1g_F          778 EFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ  818 (971)
T ss_dssp             HHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH
Confidence            123333344433       3678888888888888876543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.02  E-value=7.5e-05  Score=71.05  Aligned_cols=186  Identities=11%  Similarity=0.094  Sum_probs=138.3

Q ss_pred             HHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHh
Q 042204          272 PVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIIN  351 (559)
Q Consensus       272 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~  351 (559)
                      ..+++-|.+.+.+.+..++.-|..+...+.+....++..+++..|+....+.+...+..++++++++....+.....+-.
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            44556677788888999999999966567778899999999999999999999999999999999998865543332334


Q ss_pred             CCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHH--------c--CCHHHHHHHhh---cCChhHHHHHHH
Q 042204          352 CGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVID--------A--GLIGPLINLLQ---NAEINIKNWAAW  418 (559)
Q Consensus       352 ~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~--------~--~~i~~Li~lL~---~~~~~v~~~a~~  418 (559)
                      ...+.++..++.+. ...|.+.|...|-.++..++.....+.+        .  ..++.|+.+|+   ..|.+++..|+.
T Consensus       201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            46788999999987 8999999999999998754333322221        1  24889999997   678999999999


Q ss_pred             HHHHHhcCCC-HH----HHHHHHHcCChHHHHhcCCCC--ChHHHHH
Q 042204          419 AISNATSGGS-HE----QIKYLVREKCIKPLCDLLPCA--NPTIVTV  458 (559)
Q Consensus       419 aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~lL~~~--d~~v~~~  458 (559)
                      .|..+..+.+ .+    ....+-+.|+=..+...++..  +++++.+
T Consensus       280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            8888776644 23    233444556555666666654  5565443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.98  E-value=0.00039  Score=78.72  Aligned_cols=338  Identities=12%  Similarity=0.080  Sum_probs=186.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh---CCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCC
Q 042204          152 MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL---ASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA  228 (559)
Q Consensus       152 ~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~  228 (559)
                      .+.+ ...++.++++++.++.+-.+..     ...++.++..+   .++++.++..++|+++.++..-......+  ..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHH
Confidence            4445 7889999999999998644311     12334444433   33678899999999999874311111121  246


Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc--CCHhHHHHHHHHHHHhccCCh-hHHH
Q 042204          229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS--NDKEVLTDACWALYFLSNGKN-DKIQ  305 (559)
Q Consensus       229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~-~~~~  305 (559)
                      ++.++..+. +  +.++..|++++.++|...+..-......+++.+..++..  -+...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l~-~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHALG-N--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHTT-C--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHhC-C--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            777777773 2  678899999999999764322223446666777777765  357888999999999885443 3333


Q ss_pred             HHHHhCcHHHHHHhh----CCC-CCcchh---hHHHHHHHhhcCCh----------------------HHHHHHHhCCCh
Q 042204          306 AVIEAGVCPRLVELL----GHR-SSSVLS---PALQTIGHIVAGDD----------------------FQTQCIINCGAL  355 (559)
Q Consensus       306 ~~~~~g~l~~L~~lL----~~~-~~~v~~---~al~~L~nl~~~~~----------------------~~~~~~~~~g~l  355 (559)
                      ..++ .+++.+...+    ... ++..+.   ..+.+|+.+...-.                      ..... +...++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence            3332 2444444433    222 222222   34455544443210                      00111 122345


Q ss_pred             HHHHHHhcC-CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHH----hhc-CChhHHHHHHHHHHHHhc--CC
Q 042204          356 PYLLVLLIH-SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINL----LQN-AEINIKNWAAWAISNATS--GG  427 (559)
Q Consensus       356 ~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~l----L~~-~~~~v~~~a~~aL~nl~~--~~  427 (559)
                      +.+..++.. ..+..+.+.++.++..++..-.+...     ..+|.++..    +.. ..+    ..++.+..++.  +.
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~  756 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH  756 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence            555555532 12568888999999887541111111     123333333    222 122    23444444433  22


Q ss_pred             CH---HHHHHHHHcCChHHHHhcCC---CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchH-HHHHHHHhccHHHHH
Q 042204          428 SH---EQIKYLVREKCIKPLCDLLP---CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQ-YAQLVEEAEGLEKIE  500 (559)
Q Consensus       428 ~~---~~~~~l~~~~~l~~L~~lL~---~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~-~~~~i~~~g~l~~l~  500 (559)
                      .+   .....+.+ .++..+..++.   ..+++++......+..++......--      .... +.. +     ++.+.
T Consensus       757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~------~~~~~~~~-i-----~~~~~  823 (963)
T 2x19_B          757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL------CERLDVKA-V-----FQCAV  823 (963)
T ss_dssp             CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG------CTTSCHHH-H-----HHHHH
T ss_pred             CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc------CCcccHHH-H-----HHHHH
Confidence            21   12222111 12333333332   24699999999999999976543210      0111 122 2     23444


Q ss_pred             HHhcCCCHHHHHHHHHHHHhhcCC
Q 042204          501 NLQSHENNEIHEKSVKILETYWCG  524 (559)
Q Consensus       501 ~L~~~~~~~v~~~a~~il~~~f~~  524 (559)
                      ....+.+.++.+.+.+.+..++..
T Consensus       824 ~~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          824 LALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhc
Confidence            455689999999999999887753

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.97  E-value=0.0024  Score=72.89  Aligned_cols=339  Identities=11%  Similarity=0.120  Sum_probs=181.4

Q ss_pred             CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHH-hhcCCCCHHHHHHHHHHHHHHhcCC--ch---hHHHHHh-
Q 042204          111 DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVE-FLMREDYPQLQYEAAWALTNIASKT--SE---DTKVVID-  183 (559)
Q Consensus       111 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~-lL~~~~~~~~~~~a~~~L~nl~~~~--~~---~~~~i~~-  183 (559)
                      .+...+..++.++..+++-   -+...+.+..+++.+.+ ++.  + ++++..|+.+|..+....  +.   ....+.. 
T Consensus       207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            4567888888888887663   22344566778888873 443  4 899999999999998742  11   0111110 


Q ss_pred             -CCCHHHHHH-hh-------------CCCCHHHHHHHHHHHHHHhC-------CCchhhhhhhccCCHHHHHHHhchhhh
Q 042204          184 -HGAVPIFVK-LL-------------ASPNDDIREQAVWALGNVAG-------DSPRCRDLVLSEEALIPLLAQLNEHAK  241 (559)
Q Consensus       184 -~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~r~~i~~~g~l~~Ll~ll~~~~~  241 (559)
                       .+++..+.. ++             .+.+.+.....+..+..+..       ..+..+..+  ..+++.++... ...+
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             122222222 11             12234444445555544331       111111111  11344444443 3346


Q ss_pred             HhHHHHHHHHHHHhhc----CCCCC--cHhhHhchHHHHHHhhccC-------------------CH---hHHHHHHHHH
Q 042204          242 LSMLRTATWTLSNFCR----GMPRP--IFEQVRPALPVLAQLVHSN-------------------DK---EVLTDACWAL  293 (559)
Q Consensus       242 ~~~~~~a~~~L~nL~~----~~~~~--~~~~~~~~l~~L~~lL~~~-------------------d~---~v~~~a~~~L  293 (559)
                      .++...++..+..++.    .....  .......+++.++..+..+                   |.   .....+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            6677777777777766    32111  1223355556655554321                   11   1233344555


Q ss_pred             HHhccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC-----CC
Q 042204          294 YFLSNGKNDKIQAVIEAGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH-----SH  366 (559)
Q Consensus       294 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~-----~~  366 (559)
                      ..++......   ++. -+.+.+...+..  .++..++.+++++|.++.+.......-.-..+++.|..+...     + 
T Consensus       438 ~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-  512 (1049)
T 3m1i_C          438 VYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-  512 (1049)
T ss_dssp             HHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred             HHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence            5555322221   111 123445555543  567788999999999986543321111111344455554332     2 


Q ss_pred             chhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHH--------HHH
Q 042204          367 KKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQI--------KYL  435 (559)
Q Consensus       367 ~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l  435 (559)
                      .+.++..++|+++.++.   ..++....     +++.|+..+.++++.++..|++++.+++........        .++
T Consensus       513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~  587 (1049)
T 3m1i_C          513 KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI  587 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence            45566679999998864   22332222     566788888888899999999999999985432221        111


Q ss_pred             HHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhh
Q 042204          436 VREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG  470 (559)
Q Consensus       436 ~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~  470 (559)
                        ..++..+..++..-+.+-...+.+++..++...
T Consensus       588 --~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          588 --QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             --HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence              123444444555555555666777777776543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.95  E-value=0.00012  Score=69.68  Aligned_cols=189  Identities=11%  Similarity=0.085  Sum_probs=142.6

Q ss_pred             HHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 042204          314 PRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVI  393 (559)
Q Consensus       314 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li  393 (559)
                      ..+++.|.+.+...+..++.-|..+...+......++..+++..|+.+.... +...+..+..++.++..+ ......++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchh
Confidence            3455556667777888999999997766777888999999999999999998 999999999999999764 44555555


Q ss_pred             -HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHH--------Hc--CChHHHHhcCC---CCChHHHHHH
Q 042204          394 -DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLV--------RE--KCIKPLCDLLP---CANPTIVTVC  459 (559)
Q Consensus       394 -~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~--~~l~~L~~lL~---~~d~~v~~~~  459 (559)
                       ...++..++.++.+.+..|.+.|+..|..++...+ .....+.        ..  .-++.|+.+|.   ..|.++...+
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence             34578888888888889999999999999987642 1111111        11  23778999996   6789999999


Q ss_pred             HHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC--CHHHHH
Q 042204          460 LKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE--NNEIHE  512 (559)
Q Consensus       460 l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~--~~~v~~  512 (559)
                      +..|..++...+..+       ....+...+++.|.-..+..++...  ++++.+
T Consensus       278 mtLIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          278 VTLINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            999999987754321       1235778889899888888866554  556544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.87  E-value=0.023  Score=64.73  Aligned_cols=354  Identities=10%  Similarity=0.083  Sum_probs=188.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcc---C-CCC---chH-----HHHHh--cCcHHHHHHhhcCCCCHHHHHHHHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLS---I-ERS---PPI-----EEVIQ--SGVVPRFVEFLMREDYPQLQYEAAW  165 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls---~-~~~---~~~-----~~ii~--~g~v~~Lv~lL~~~~~~~~~~~a~~  165 (559)
                      .++.+++.++ .+...+..++..|+.+..   . ...   ..+     +.+..  ..+++.+..++....++.++..++.
T Consensus       139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~  217 (1049)
T 3m1i_C          139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE  217 (1049)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            5677888776 444444455555554421   1 000   000     11221  1234444555655444789999999


Q ss_pred             HHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCC--ch---hhhhhhccCCHHHHHHHhc--
Q 042204          166 ALTNIASKTSEDTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDS--PR---CRDLVLSEEALIPLLAQLN--  237 (559)
Q Consensus       166 ~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~--~~---~r~~i~~~g~l~~Ll~ll~--  237 (559)
                      ++.+....-+  ...+.+...++.+.+ ++  .+++++..|+.+|..+....  +.   ....+..  .++.++..+.  
T Consensus       218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~s  291 (1049)
T 3m1i_C          218 SLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATS  291 (1049)
T ss_dssp             HHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHh
Confidence            9998776333  233566677777773 44  37899999999999998652  21   1111110  1122222110  


Q ss_pred             ---------------hhhhHhHHHHHHHHHHHhhcCC------CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204          238 ---------------EHAKLSMLRTATWTLSNFCRGM------PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL  296 (559)
Q Consensus       238 ---------------~~~~~~~~~~a~~~L~nL~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  296 (559)
                                     .+.+.+.....+..+..+....      +.........+++.++.+...++.++...++.....+
T Consensus       292 i~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l  371 (1049)
T 3m1i_C          292 VMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNL  371 (1049)
T ss_dssp             TCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             hCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence                           1224444455555554433210      1111223455677777777778888888888777666


Q ss_pred             cc----CC--hhHHHHHHHhCcHHHHHHhhCCCCCc----------------------chhhHHHHHHHhhcCChHHHHH
Q 042204          297 SN----GK--NDKIQAVIEAGVCPRLVELLGHRSSS----------------------VLSPALQTIGHIVAGDDFQTQC  348 (559)
Q Consensus       297 ~~----~~--~~~~~~~~~~g~l~~L~~lL~~~~~~----------------------v~~~al~~L~nl~~~~~~~~~~  348 (559)
                      ++    ..  ......++. .+++.++..+..++..                      .+..+..+|..++.-.....-.
T Consensus       372 ~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~  450 (1049)
T 3m1i_C          372 VADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE  450 (1049)
T ss_dssp             HHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            64    11  111122222 2455666655432110                      0112344555554322221111


Q ss_pred             HHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHhhcCCHHH-HHHHHHcCCHHHHHHHhhc-----CChhHHHHHHHHHH
Q 042204          349 IINCGALPYLLVLLIH-SHKKSIKNHACWTISKITAGNREQ-IQAVIDAGLIGPLINLLQN-----AEINIKNWAAWAIS  421 (559)
Q Consensus       349 ~~~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~-~~~li~~~~i~~Li~lL~~-----~~~~v~~~a~~aL~  421 (559)
                          -+.+.+...+.. ..+...+..|+|+++.++.+.... ...++. .+++.|..+...     +.+.++..++|+++
T Consensus       451 ----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg  525 (1049)
T 3m1i_C          451 ----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVG  525 (1049)
T ss_dssp             ----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence                123444555543 226678899999999997632222 112121 144455554321     23455557889999


Q ss_pred             HHhcC--CCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhh
Q 042204          422 NATSG--GSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGE  471 (559)
Q Consensus       422 nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~  471 (559)
                      .++..  ..++...     .+++.|...+.++++.|+..|..+|.++++...
T Consensus       526 ry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          526 QYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             HCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            77643  1222222     257778888888899999999999999997643

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.76  E-value=0.001  Score=75.32  Aligned_cols=330  Identities=12%  Similarity=0.072  Sum_probs=184.5

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFL---MREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG  185 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL---~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g  185 (559)
                      .+.++..+..++.++..+...-....      ...++.++..+   .+++ +.++..++|+++.++..-..... .. ..
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~------~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~~-~l-~~  529 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY------SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHPV-MI-NS  529 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC------CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCHH-HH-TT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh------hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCHH-HH-HH
Confidence            55678888888888988765421111      12334444433   2344 89999999999998863222222 22 37


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHh----ch-hhhHhHHHHHHHHHHHhhcCCC
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL----NE-HAKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll----~~-~~~~~~~~~a~~~L~nL~~~~~  260 (559)
                      +++.++..|.+  +.++..|+++|.+++.+.   +..+.  ..++.++..+    .. ..+...+..+..++..++...+
T Consensus       530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~---~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~  602 (963)
T 2x19_B          530 VLPLVLHALGN--PELSVSSVSTLKKICREC---KYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ  602 (963)
T ss_dssp             THHHHHHHTTC--GGGHHHHHHHHHHHHHHT---GGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCC--chHHHHHHHHHHHHHHHH---HHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence            88999998865  789999999999999542   33322  3345554443    22 1245667778888888876543


Q ss_pred             -CCcHhhHhchHHHHHHhhc----cC-CHhHHH---HHHHHHHHhccC----Ch------------------hHHHHHHH
Q 042204          261 -RPIFEQVRPALPVLAQLVH----SN-DKEVLT---DACWALYFLSNG----KN------------------DKIQAVIE  309 (559)
Q Consensus       261 -~~~~~~~~~~l~~L~~lL~----~~-d~~v~~---~a~~~L~~l~~~----~~------------------~~~~~~~~  309 (559)
                       .........+++.+...+.    .. +++.+.   ..+.+|+.+...    .+                  ..... +.
T Consensus       603 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  681 (963)
T 2x19_B          603 VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VL  681 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HH
Confidence             2222333445555444432    22 444433   344444433311    00                  01111 22


Q ss_pred             hCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh----cCCCchhHHHHHHHHHHHhhc
Q 042204          310 AGVCPRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL----IHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       310 ~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      ..+++.+..++..  .+..+.+.++.+++.++..-.....     ..++.++..+    .....+    ..+++++.++.
T Consensus       682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~  752 (963)
T 2x19_B          682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVH  752 (963)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHH
Confidence            2345555555532  3557888888888887642221111     2234433333    221022    34555555544


Q ss_pred             --CCH----HHHHHHHHcCCHHHHHHHhhc---CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC-----ChHHHHhcCC
Q 042204          384 --GNR----EQIQAVIDAGLIGPLINLLQN---AEINIKNWAAWAISNATSGGSHEQIKYLVREK-----CIKPLCDLLP  449 (559)
Q Consensus       384 --~~~----~~~~~li~~~~i~~Li~lL~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~-----~l~~L~~lL~  449 (559)
                        +..    +.+..+++. ++..++.++..   .+++++......+..+........    ....     +++.++..++
T Consensus       753 ~f~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~----~~~~~~~~~i~~~~~~~l~  827 (963)
T 2x19_B          753 IFAHEPAHFPPIEALFLL-VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF----LCERLDVKAVFQCAVLALK  827 (963)
T ss_dssp             HHTTCTTTCHHHHHHHHH-HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG----GCTTSCHHHHHHHHHHHTT
T ss_pred             HhCCCcchHHHHHHHHHH-HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH----cCCcccHHHHHHHHHHHcC
Confidence              221    233333332 44555555542   368999999999988886432111    1111     3445566678


Q ss_pred             CCChHHHHHHHHHHHHHHHh
Q 042204          450 CANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       450 ~~d~~v~~~~l~~l~~il~~  469 (559)
                      ..++.+...++..+..++..
T Consensus       828 ~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          828 FPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            89999999999999998865

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.65  E-value=0.02  Score=64.55  Aligned_cols=389  Identities=6%  Similarity=0.037  Sum_probs=198.9

Q ss_pred             CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC
Q 042204          111 DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIASKTSEDTKVVIDHG  185 (559)
Q Consensus       111 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~-----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g  185 (559)
                      .++..+..++++++.++..- .+....-.-..++|.|+.++..     +. +.++..++|+++.++.--......+  ..
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~~~~L--~~  540 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWNFL--RT  540 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHCHHHH--HH
T ss_pred             CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhccHHHH--HH
Confidence            57999999999999976442 2222222223467788888763     22 4456678899998776322222221  13


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhc------cCCHHHHHHHhch---hhhHhHHHHHHHHHHHhh
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLS------EEALIPLLAQLNE---HAKLSMLRTATWTLSNFC  256 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~l~~Ll~ll~~---~~~~~~~~~a~~~L~nL~  256 (559)
                      ++..|+..+..+++.++..|+|++.+||.+   ++..+..      ...++.++..+..   .-+..-...+..+++.+.
T Consensus       541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            566677777778899999999999999964   4444422      1235555544422   224455567788888888


Q ss_pred             cCCCCCc--HhhHhchHHHHH----Hhhc--cC------C---HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh
Q 042204          257 RGMPRPI--FEQVRPALPVLA----QLVH--SN------D---KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL  319 (559)
Q Consensus       257 ~~~~~~~--~~~~~~~l~~L~----~lL~--~~------d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l  319 (559)
                      ...+...  ...+..+++.+.    .+..  +.      |   .......+.++..++..-.......+. .+.+.++++
T Consensus       618 ~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~  696 (1023)
T 4hat_C          618 SEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNMLQL  696 (1023)
T ss_dssp             TTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHH
T ss_pred             HhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHH
Confidence            8764332  112222333222    2221  01      1   123344455544444221111101110 122222222


Q ss_pred             hCC------------CCC-----------cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc----CC----Cch
Q 042204          320 LGH------------RSS-----------SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI----HS----HKK  368 (559)
Q Consensus       320 L~~------------~~~-----------~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~----~~----~~~  368 (559)
                      .+.            +..           .++..+++.+...+...+.. + .+...+++.|+..+-    ..    .++
T Consensus       697 y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~-~-~~~~~~~~~l~~~vl~dY~~~~~~~r~~  774 (1023)
T 4hat_C          697 YRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL-D-DVVKVLVEPLLNAVLEDYMNNVPDARDA  774 (1023)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH-H-HHHHHTHHHHHHHHHHHHHHSCGGGCCH
T ss_pred             HHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH-H-HHHHHhHHHHHHHHHHHHHhCChhhccH
Confidence            110            111           12222333333222211111 1 122245666655442    11    023


Q ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc---CChhHHHHHHHHHHHHhcCCC-------HHHHHHHHHc
Q 042204          369 SIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN---AEINIKNWAAWAISNATSGGS-------HEQIKYLVRE  438 (559)
Q Consensus       369 ~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~---~~~~v~~~a~~aL~nl~~~~~-------~~~~~~l~~~  438 (559)
                      .+-.-..-.+..+...-.+.+..++++ ++..=++++..   +.|+.+..-...+.++...+.       ++..+.    
T Consensus       775 ~vL~l~s~iv~~~~~~~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~----  849 (1023)
T 4hat_C          775 EVLNCMTTVVEKVGHMIPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL----  849 (1023)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH----
Confidence            333333344444433334445555554 66666777765   367888777777777665432       222222    


Q ss_pred             CChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHH----HHHHhcCCCHHHHHHH
Q 042204          439 KCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEK----IENLQSHENNEIHEKS  514 (559)
Q Consensus       439 ~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~----l~~L~~~~~~~v~~~a  514 (559)
                       +++.++--++++.+++...++..+..++......+        ..++...+-+.-+++.    +.-+.+....-..+.-
T Consensus       850 -~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~  920 (1023)
T 4hat_C          850 -FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG--------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQ  920 (1023)
T ss_dssp             -HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC--------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHH
T ss_pred             -HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence             34455556789999999999999999887655321        1123444444444444    3334455554455555


Q ss_pred             HHHHHhhcC
Q 042204          515 VKILETYWC  523 (559)
Q Consensus       515 ~~il~~~f~  523 (559)
                      ..++...|.
T Consensus       921 ~~~l~~l~~  929 (1023)
T 4hat_C          921 ALLLMKLIS  929 (1023)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            566666555

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.64  E-value=0.00042  Score=77.89  Aligned_cols=304  Identities=11%  Similarity=0.034  Sum_probs=163.0

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc--hhHHHHHhCCC
Q 042204          109 WSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS--EDTKVVIDHGA  186 (559)
Q Consensus       109 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~--~~~~~i~~~g~  186 (559)
                      .+.++.....++.++...++   --+...++..++++.+.++|..   ++++..|+.||..|.....  +.+..++..=.
T Consensus       203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~  276 (980)
T 3ibv_A          203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN  276 (980)
T ss_dssp             HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence            34678888899999999876   3456777888899999999975   7999999999999988543  22223332201


Q ss_pred             HHHHHHhhC--CCCHHHHHHHHHHHHHHhC------CCc-----hhhhhh--hccCCHHHHHHHhchhhhHhHHHHHHHH
Q 042204          187 VPIFVKLLA--SPNDDIREQAVWALGNVAG------DSP-----RCRDLV--LSEEALIPLLAQLNEHAKLSMLRTATWT  251 (559)
Q Consensus       187 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~------~~~-----~~r~~i--~~~g~l~~Ll~ll~~~~~~~~~~~a~~~  251 (559)
                      +...+..+.  ..+.++.+..+..+..++.      ..+     +.+...  .-.+.++.++..+. +++.++...++..
T Consensus       277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~-~~~deVs~~t~~F  355 (980)
T 3ibv_A          277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLS-DDYDETSTAVFPF  355 (980)
T ss_dssp             HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHT-CSSHHHHHTTHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhC-CCchhHHHHHHHH
Confidence            112222222  4666766555544433321      111     000000  01135666666663 3444555555555


Q ss_pred             HHHhhcCC---CC----Cc--HhhHhchHHHHHHhhccC------C----------HhHHHHHHHHHHHhc-cCChhHHH
Q 042204          252 LSNFCRGM---PR----PI--FEQVRPALPVLAQLVHSN------D----------KEVLTDACWALYFLS-NGKNDKIQ  305 (559)
Q Consensus       252 L~nL~~~~---~~----~~--~~~~~~~l~~L~~lL~~~------d----------~~v~~~a~~~L~~l~-~~~~~~~~  305 (559)
                      +..+....   +.    ..  ......+++.++.-+..+      +          .+.|.... .+-..+ .-.++..-
T Consensus       356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l  434 (980)
T 3ibv_A          356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS  434 (980)
T ss_dssp             HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH
Confidence            55444210   11    11  122344444444444321      1          12333333 222222 11221111


Q ss_pred             H-HHHhCcHHHHHHhhC---CCCCcchhhHHHHHHHhhcCChHHHHHHH-hC----CChHHHHHHhc-----CCCchhHH
Q 042204          306 A-VIEAGVCPRLVELLG---HRSSSVLSPALQTIGHIVAGDDFQTQCII-NC----GALPYLLVLLI-----HSHKKSIK  371 (559)
Q Consensus       306 ~-~~~~g~l~~L~~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~----g~l~~L~~lL~-----~~~~~~v~  371 (559)
                      . +.+ -+.+.+.+.+.   +.++..++.++.+|+.++.+-......+. ..    .+++.+..++.     .+ .+.|+
T Consensus       435 ~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~  512 (980)
T 3ibv_A          435 SYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQ  512 (980)
T ss_dssp             HHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHH
T ss_pred             HHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHH
Confidence            1 111 12222333342   24577899999999999886542111110 01    23455555554     45 78999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh------cCChhHHHHHHHHHHHHhcCCC
Q 042204          372 NHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ------NAEINIKNWAAWAISNATSGGS  428 (559)
Q Consensus       372 ~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~------~~~~~v~~~a~~aL~nl~~~~~  428 (559)
                      ..++|+++..+.--..      ....++.++..+-      +++.+++..|+.++.+++....
T Consensus       513 ~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          513 LLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            9999999998762110      1234555555554      4567899999999999987643

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.0011  Score=63.11  Aligned_cols=191  Identities=12%  Similarity=0.104  Sum_probs=125.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch-HHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP-IEEVI--QSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~ii--~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      .+| +-+.|.|.++..|.+|+..+.+++....... .+...  -....+.+...+.+.+ ..++..++.+|..++.....
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence            445 5678999999999999999999876532111 11111  1234566677787777 89999999999988763211


Q ss_pred             -----hHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHH
Q 042204          177 -----DTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATW  250 (559)
Q Consensus       177 -----~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~  250 (559)
                           ......-..++|.|+. .+.+....++..+..++..++...... ..     +++.++..+ .+.++.++..++.
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~  161 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN  161 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence                 1111122356787876 578888999999988888776432211 11     134444444 5667888888887


Q ss_pred             HHHHhhcCC--C-CCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccC
Q 042204          251 TLSNFCRGM--P-RPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNG  299 (559)
Q Consensus       251 ~L~nL~~~~--~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  299 (559)
                      .|..+....  . ......+..+++.+..++.+.|+.|+..|..++..+-..
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            777776542  1 122233455677788889999999999999998877643

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.54  E-value=5.4e-05  Score=76.00  Aligned_cols=217  Identities=14%  Similarity=0.143  Sum_probs=141.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch-HHHHHhcCcHHHHHHhhc---------CCCCHHHHHHHHHHHH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP-IEEVIQSGVVPRFVEFLM---------REDYPQLQYEAAWALT  168 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~ii~~g~v~~Lv~lL~---------~~~~~~~~~~a~~~L~  168 (559)
                      +....|+..|-++.++.+.-|+-.||.++....... +..-.+..+.-+++-.|.         +.--.-+|+.|+.+|+
T Consensus       174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            356788889999999999999999999886542100 000001123333333332         1112479999999999


Q ss_pred             HHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhh-ccCCHHHHHHHhchhhhHhHHHH
Q 042204          169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVL-SEEALIPLLAQLNEHAKLSMLRT  247 (559)
Q Consensus       169 nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~l~~Ll~ll~~~~~~~~~~~  247 (559)
                      .+ ..-+..      ..++..|+..+..+..+++..++-.|..+       .+.+. -.++++.++..| .+.+.+++..
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-------~DLL~~Ld~Vv~aVL~GL-~D~DDDVRAV  318 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-------KEFVEDKDGLCRKLVSLL-SSPDEDIKLL  318 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-------GGGCCCHHHHHHHHHHHT-TCSSHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-------HHHHHHHHHHHHHHHhhc-CCcccHHHHH
Confidence            99 544433      35566666666788999999999999888       22222 123456666666 5667899999


Q ss_pred             HHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCC--HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC
Q 042204          248 ATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSND--KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS  325 (559)
Q Consensus       248 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~  325 (559)
                      |+.+|.-++  .+    .....++..+...|.+-|  ..........|+.|+..+..   .......+|+|...|.|+-.
T Consensus       319 AAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtIT  389 (800)
T 3oc3_A          319 SAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVP  389 (800)
T ss_dssp             HHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSH
T ss_pred             HHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcH
Confidence            999999888  22    334556666666665432  11223334445554433321   11123689999999999999


Q ss_pred             cchhhHHHHHHHhh
Q 042204          326 SVLSPALQTIGHIV  339 (559)
Q Consensus       326 ~v~~~al~~L~nl~  339 (559)
                      +||..+++++..+.
T Consensus       390 SVR~AVL~TL~tfL  403 (800)
T 3oc3_A          390 EVRTSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998887

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.30  E-value=0.031  Score=62.93  Aligned_cols=295  Identities=13%  Similarity=0.150  Sum_probs=157.4

Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHH-HHhhcCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHh--CC
Q 042204          110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRF-VEFLMREDYPQLQYEAAWALTNIASKTS-EDTKVVID--HG  185 (559)
Q Consensus       110 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~L-v~lL~~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~--~g  185 (559)
                      +.+++....++.+++.+++=   -+...+++.++++.+ ..+|.  + +.++..|+.||..|.+... +....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            45677777788888887653   356778889999988 47764  3 7999999999999987432 22222211  12


Q ss_pred             CHHHHHHhh-------------CCCCHHHHHHHHHHHHHHhCCCchhhhhhhcc-C-------CHHHHHHHhchhhhHhH
Q 042204          186 AVPIFVKLL-------------ASPNDDIREQAVWALGNVAGDSPRCRDLVLSE-E-------ALIPLLAQLNEHAKLSM  244 (559)
Q Consensus       186 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-g-------~l~~Ll~ll~~~~~~~~  244 (559)
                      ++..+..++             ...+++....-+..+..+...   ....+... +       ++..++..- ..++.++
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei  367 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI  367 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence            222222222             112334444455555544321   11222211 1       122223222 3456677


Q ss_pred             HHHHHHHHHHhhc----CCC-----C------------CcHhhHhchHHHHHHhh----ccCC-----------------
Q 042204          245 LRTATWTLSNFCR----GMP-----R------------PIFEQVRPALPVLAQLV----HSND-----------------  282 (559)
Q Consensus       245 ~~~a~~~L~nL~~----~~~-----~------------~~~~~~~~~l~~L~~lL----~~~d-----------------  282 (559)
                      .+.+......|..    ..+     .            .......+++..|...+    ..++                 
T Consensus       368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            7665544333322    111     0            01111233333333322    2111                 


Q ss_pred             ---H-----hHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChHH-HHHHHh
Q 042204          283 ---K-----EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR--SSSVLSPALQTIGHIVAGDDFQ-TQCIIN  351 (559)
Q Consensus       283 ---~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~-~~~~~~  351 (559)
                         .     .+..+++..+.++.   .+....+    +++.+.+.+..+  ++...+.++|++|.++..-... -..++-
T Consensus       448 ~d~~~~~ly~~mrd~L~~lt~l~---~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETLVYLTHLD---YVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHC---HHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHhcCC---HHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence               1     12333433333332   2111111    345555555543  4678899999999997543322 112222


Q ss_pred             CCChHHHHHHhcCCC----chhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 042204          352 CGALPYLLVLLIHSH----KKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT  424 (559)
Q Consensus       352 ~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~  424 (559)
                       .+++.|+.+..++.    ...++...+|+++..+.   ..++....     ++..|++.+.+.++.++..|+.++..++
T Consensus       521 -~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~  594 (1073)
T 3gjx_A          521 -TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA  594 (1073)
T ss_dssp             -HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence             46777777775441    22355667799988765   23443333     4566778888889999999999999998


Q ss_pred             cCC
Q 042204          425 SGG  427 (559)
Q Consensus       425 ~~~  427 (559)
                      ..+
T Consensus       595 ~~C  597 (1073)
T 3gjx_A          595 QKC  597 (1073)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            754

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.26  E-value=0.017  Score=54.51  Aligned_cols=372  Identities=17%  Similarity=0.182  Sum_probs=203.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHH-hcCcHHHHHHhhcCCC------CHHHH------HHHHHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMRED------YPQLQ------YEAAWA  166 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~v~~Lv~lL~~~~------~~~~~------~~a~~~  166 (559)
                      ++-.+++.+-|.|..++-.-.|  .+--..+..|+...++ -.|++-.--+++.-++      +|++.      ..+.. 
T Consensus       189 til~~lRFiISKDt~lKd~~IW--n~~~q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~qNpel~~LiQVvtR~FD-  265 (619)
T 3c2g_A          189 AIFIIFRFIISKDTRLKDYFIW--NNNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLPQNPELAHLIQVIIRTFD-  265 (619)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHH-
T ss_pred             hhhhhhHhhhcccceeccceee--CCccccCCCCChhHHHHHHHHHHhhHHhhcCCChhcccCCHHHHHHHHHHHHHHH-
Confidence            3445666777777554432222  2211222233333333 2333333334444333      23332      33333 


Q ss_pred             HHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHH
Q 042204          167 LTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLR  246 (559)
Q Consensus       167 L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~  246 (559)
                      |.++..+++...+.++...++..+....+-++.++.+.....|...+....-+.  .--...++.++..+..+.+.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEE
Confidence            445666688899999999999999999999999999999999988753322211  112346788888887788889999


Q ss_pred             HHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhcc-------CCHhHHHHHHH-------HHHHhcc-------------
Q 042204          247 TATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHS-------NDKEVLTDACW-------ALYFLSN-------------  298 (559)
Q Consensus       247 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~-------~L~~l~~-------------  298 (559)
                      .....|+|....+ |......-.++++.|...+..       .+..-+..+|.       ++.|..-             
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            9999999999887 444555557888888776632       12333344444       4443321             


Q ss_pred             CChh--HHHHHHHhCcHHHHHHhhCCCCCc------chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhH
Q 042204          299 GKND--KIQAVIEAGVCPRLVELLGHRSSS------VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSI  370 (559)
Q Consensus       299 ~~~~--~~~~~~~~g~l~~L~~lL~~~~~~------v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v  370 (559)
                      +..+  +...+++..++.+|+..|+-+.-.      +|...++..--+......-     ..+++    ...+......+
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~P-----kd~~l----~VtDd~rk~NL  494 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVP-----KDGVL----NVIDENRKENL  494 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSC-----CTTGG----GCCCTTTCCCH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCc-----hhhhc----cccchhhhhhh
Confidence            0111  223355667888888888765432      2333444333222211100     00111    11111101222


Q ss_pred             ----HHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 042204          371 ----KNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC  445 (559)
Q Consensus       371 ----~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  445 (559)
                          ...-+|+-+.=.. ...+..+.+++. .+..|+.++..-..+.+  ++..+..                  ++-=.
T Consensus       495 vGHIciA~sWa~~Q~tNertqdTkqQLiER-~fSLL~~LmEQc~~E~q--VAh~~Ys------------------IsCPL  553 (619)
T 3c2g_A          495 IGHICAAYSWVFRQPNNTRTQSTKQQLVER-TISLLLVLMEQCGAEKE--VAQYSYS------------------IDCPL  553 (619)
T ss_dssp             HHHHHHHHHHHHHSCCCTTTHHHHHHHHHH-HHHHHHHHHHHTTCHHH--HHHTTTT------------------SCCGG
T ss_pred             HHHHHHHHHHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHhhhHHH--HHhheee------------------ccCch
Confidence                2333455443332 356666777764 56666666654322211  1111111                  22223


Q ss_pred             hcCCCC--ChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          446 DLLPCA--NPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       446 ~lL~~~--d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      ++|++.  .|....+++..-.+|++..+...             ....  ---..++-+.+|.|++|.+.|..++.+|
T Consensus       554 nlLn~nQ~KP~FI~NVL~VcDKILeHcP~~A-------------d~W~--i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          554 NLLNGNQVKPTFIHNVLVVCDKILEHCPTRA-------------DIWT--IDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             GGGSSCCCCHHHHHHHHHHHHHHHHHCTTHH-------------HHSC--CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             hhhcccccChHHHHHHHHHHHHHHHhCcchh-------------ccce--echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            456543  47777778877778886654321             1110  0124567889999999999998888765

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.18  E-value=0.0076  Score=67.72  Aligned_cols=306  Identities=9%  Similarity=-0.005  Sum_probs=163.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh--hhhccCCHHH
Q 042204          154 EDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD--LVLSEEALIP  231 (559)
Q Consensus       154 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~--~i~~~g~l~~  231 (559)
                      .+ +.++..++.+|......-  ....+++.+.++.+..+|.+  ++++..|+.+|..|........+  .++..=.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            55 899999999999998842  24566677888999988875  79999999999999854432111  1111100111


Q ss_pred             HHHHhch-hhhHhHHHHHHHHHHHhh------cCCCC--------CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204          232 LLAQLNE-HAKLSMLRTATWTLSNFC------RGMPR--------PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL  296 (559)
Q Consensus       232 Ll~ll~~-~~~~~~~~~a~~~L~nL~------~~~~~--------~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  296 (559)
                      .+..+.. ..|.+..+..+..+..++      ...+.        .......+.++.++.++.+++.++...++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            1111111 345555444333332221      22221        01134467889999999888888877766665544


Q ss_pred             ccC-----C----hhHHHHHHHhCcHHHHHHhhCCCCC----------------cchhhHHHHHHHhhcCChHHHHH-HH
Q 042204          297 SNG-----K----NDKIQAVIEAGVCPRLVELLGHRSS----------------SVLSPALQTIGHIVAGDDFQTQC-II  350 (559)
Q Consensus       297 ~~~-----~----~~~~~~~~~~g~l~~L~~lL~~~~~----------------~v~~~al~~L~nl~~~~~~~~~~-~~  350 (559)
                      ...     .    ......++. .+++.++..+..++.                ..|....-.+..++.-.+...-. +.
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            421     0    111122222 245555555554321                01222221111111111111111 00


Q ss_pred             hCCChHHHHHHhc---CCCchhHHHHHHHHHHHhhcCCHHHHHHHH-Hc----CCHHHHHHHhh-----cCChhHHHHHH
Q 042204          351 NCGALPYLLVLLI---HSHKKSIKNHACWTISKITAGNREQIQAVI-DA----GLIGPLINLLQ-----NAEINIKNWAA  417 (559)
Q Consensus       351 ~~g~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~li-~~----~~i~~Li~lL~-----~~~~~v~~~a~  417 (559)
                      + -+.+.+...+.   +. +-..++.+..+++.++.+-........ ..    .+++.|..++.     ..++.++..++
T Consensus       439 ~-~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~  516 (980)
T 3ibv_A          439 S-AITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYM  516 (980)
T ss_dssp             H-HHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHH
T ss_pred             H-HHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            0 11122223332   22 456678888999998765222111000 00    13455555555     56789999999


Q ss_pred             HHHHHHhcCCC--HHHHHHHHHcCChHHHHh--cCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204          418 WAISNATSGGS--HEQIKYLVREKCIKPLCD--LLPCANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       418 ~aL~nl~~~~~--~~~~~~l~~~~~l~~L~~--lL~~~d~~v~~~~l~~l~~il~~~~~  472 (559)
                      ++++..+..-.  ++....     +++.+++  -+.+++++++..|..++.++.+....
T Consensus       517 ~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          517 EILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            99999876421  121111     3444555  55567889999999999999877543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.13  E-value=0.022  Score=54.19  Aligned_cols=201  Identities=13%  Similarity=0.096  Sum_probs=141.5

Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh----hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR----DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r----~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                      .+...+.+..|+..|..-+-+.|..+..++.++.......+    +.+..  -...+..++..-.++++.-.+...|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            44556888999999999899999999999999986654322    22222  1223333332233455555566666666


Q ss_pred             hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhhCCCCCcchhhHH
Q 042204          256 CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELLGHRSSSVLSPAL  332 (559)
Q Consensus       256 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al  332 (559)
                      ++...-.......+.+-.+.+.+..++-++..+|..++..+..........++..   .++.....+|.+++--.+..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            6654323333334555667778888999999999999999886666555555554   3577788889999888999999


Q ss_pred             HHHHHhhcCChH---HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          333 QTIGHIVAGDDF---QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       333 ~~L~nl~~~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      ..||.+......   .+..+-+..-+..++.+|++. +..++-+|..+.--+.+
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999999875332   233333446688899999999 99999999999888877

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.13  E-value=0.2  Score=56.32  Aligned_cols=312  Identities=13%  Similarity=0.122  Sum_probs=167.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHH-HHhhCCCCHHHHHHHHHHHHHHhCCC-chhhh
Q 042204          144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIF-VKLLASPNDDIREQAVWALGNVAGDS-PRCRD  221 (559)
Q Consensus       144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~  221 (559)
                      ++.+..+|....++++...++.+|+...+--+  ...+++.+.++.+ ..+|.  +++++..|+.||..|.+.. +.+.+
T Consensus       208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~  283 (1073)
T 3gjx_A          208 FQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEE  283 (1073)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHH
Confidence            33344455445458888889999999988533  4567888899988 46664  6789999999999998643 22222


Q ss_pred             hhhccCCHHHHH----HHh------------chhhhHhHHHHHHHHHHHhhcCCC-----CCc-HhhHhchHHHHHHhhc
Q 042204          222 LVLSEEALIPLL----AQL------------NEHAKLSMLRTATWTLSNFCRGMP-----RPI-FEQVRPALPVLAQLVH  279 (559)
Q Consensus       222 ~i~~~g~l~~Ll----~ll------------~~~~~~~~~~~a~~~L~nL~~~~~-----~~~-~~~~~~~l~~L~~lL~  279 (559)
                      .+..  .+..++    .++            ....+.+.....+..+..+.....     .+. ......++..++.+-.
T Consensus       284 ~~~~--lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~  361 (1073)
T 3gjx_A          284 QFET--LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE  361 (1073)
T ss_dssp             HHHH--HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHH--HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC
Confidence            2211  111111    111            122345666666777766554320     011 1222334455566666


Q ss_pred             cCCHhHHHHHHHHHHHhcc----CC------------------hhHH---HHHHHhCcHHHHHHhhCCCCC---------
Q 042204          280 SNDKEVLTDACWALYFLSN----GK------------------NDKI---QAVIEAGVCPRLVELLGHRSS---------  325 (559)
Q Consensus       280 ~~d~~v~~~a~~~L~~l~~----~~------------------~~~~---~~~~~~g~l~~L~~lL~~~~~---------  325 (559)
                      .+|.++...++..=..+..    ..                  +.+.   ..++. .+...++..|..+++         
T Consensus       362 ~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~-~L~~vlI~~m~~P~ev~i~e~e~g  440 (1073)
T 3gjx_A          362 VEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLS-KVRLLMVSRMAKPEEVLVVENDQG  440 (1073)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHH-HHHHHHHHTCCCSCCEEEEECSSS
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHH-HHHHHHHHhcCCCccccccCcccc
Confidence            7788887665544222221    10                  0111   11111 233344444443321         


Q ss_pred             c-chh---h--------HHH-HHHHhhcCChHHHHHHHhCCChHHHHHHhcCC-CchhHHHHHHHHHHHhhcC-CHHHHH
Q 042204          326 S-VLS---P--------ALQ-TIGHIVAGDDFQTQCIINCGALPYLLVLLIHS-HKKSIKNHACWTISKITAG-NREQIQ  390 (559)
Q Consensus       326 ~-v~~---~--------al~-~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~  390 (559)
                      . +|+   .        +++ ++..++.-....+..+    .++.|...+... .+......+||+++.++.. .++.-.
T Consensus       441 e~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~  516 (1073)
T 3gjx_A          441 EVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEK  516 (1073)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred             hHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCccccc
Confidence            1 111   0        111 2222222111111111    233444444432 1567889999999999743 332222


Q ss_pred             HHHHcCCHHHHHHHhhcC---C--hhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204          391 AVIDAGLIGPLINLLQNA---E--INIKNWAAWAISNATSGG--SHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL  463 (559)
Q Consensus       391 ~li~~~~i~~Li~lL~~~---~--~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l  463 (559)
                      .++- .+++.|+.+....   +  ..++..++|.++.....-  .++....     ++..|.+.+...++.++..|+.++
T Consensus       517 ~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af  590 (1073)
T 3gjx_A          517 RFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTF  590 (1073)
T ss_dssp             HHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred             chHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Confidence            2222 2677777777654   2  235555668887765531  2233222     567777778888999999999999


Q ss_pred             HHHHHhhhh
Q 042204          464 ENILKVGEA  472 (559)
Q Consensus       464 ~~il~~~~~  472 (559)
                      ..+.+....
T Consensus       591 ~~i~~~C~~  599 (1073)
T 3gjx_A          591 IKIAQKCRR  599 (1073)
T ss_dssp             HHHHHHTGG
T ss_pred             HHHHHHHHH
Confidence            999876554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0044  Score=58.85  Aligned_cols=186  Identities=15%  Similarity=0.106  Sum_probs=124.6

Q ss_pred             HHHHhchhhhHhHHHHHHHHHHHhhcCCCCCc-----HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh----
Q 042204          232 LLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI-----FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND----  302 (559)
Q Consensus       232 Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~-----~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~----  302 (559)
                      +-..| .+.+...+..++-.+..+....+...     ........+.+...+.+.+..++..++.++..++.....    
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            44556 67788899999988888776542211     112344556677788889999999999999888753221    


Q ss_pred             -HHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204          303 -KIQAVIEAGVCPRLVEL-LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK  380 (559)
Q Consensus       303 -~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  380 (559)
                       ......-..+++.|++- |.+....++..|+.++..++...... .     .+++.+...+.+. ++.++.+++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence             11112223467878765 78888889999998887776533211 1     1245666778888 99999999888887


Q ss_pred             hhc--CCHH-HHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          381 ITA--GNRE-QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       381 l~~--~~~~-~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      +..  |... .....+. .+++.+..++.+.++.||..|..++..+...
T Consensus       166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            764  2110 1122222 2566788889999999999999999988764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.03  E-value=0.0026  Score=59.15  Aligned_cols=179  Identities=12%  Similarity=0.059  Sum_probs=117.0

Q ss_pred             HHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChH----HHHHH
Q 042204          274 LAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDF----QTQCI  349 (559)
Q Consensus       274 L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~----~~~~~  349 (559)
                      +...+.+.|..-...++..|.......++.....++. +++.+.-.+.+++..+...++.+|..+...-..    .... 
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~-  128 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE-  128 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH-
Confidence            4455566677777777777766554333222111111 233333344567778888888888776531110    0110 


Q ss_pred             HhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 042204          350 INCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGS  428 (559)
Q Consensus       350 ~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~  428 (559)
                      -..-++|.|+.-+-++ ...+|..+-.++..+.. .++.        .+++.+++-+.+.+.+++.+++..+..+.....
T Consensus       129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            0113578899988887 88899887777766643 2233        256677788889999999999999998875311


Q ss_pred             HHHHHHHHHcCCh---HHHHhcCCCCChHHHHHHHHHHHHHHHh
Q 042204          429 HEQIKYLVREKCI---KPLCDLLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       429 ~~~~~~l~~~~~l---~~L~~lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ..      ....+   +.+..++.+.|..|+..|+.++..+...
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            11      23468   9999999999999999999999887754

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.85  E-value=0.012  Score=59.56  Aligned_cols=244  Identities=11%  Similarity=0.075  Sum_probs=155.4

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh--HHHHHhCCCHHHHHHhhC--C--------CCHHHHHHHHHHHH
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED--TKVVIDHGAVPIFVKLLA--S--------PNDDIREQAVWALG  210 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~--~~~i~~~g~i~~L~~lL~--~--------~~~~v~~~a~~~L~  210 (559)
                      +...|+.-|-++. .++|..|+-+|..+.......  +..-.+..+.-.|+.+|.  .        --..|||.|+.+|+
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            4455666666777 699999999999987632211  000001122333333321  1        22568999999999


Q ss_pred             HHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHH
Q 042204          211 NVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDAC  290 (559)
Q Consensus       211 nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~  290 (559)
                      .+ ..-+.-      ..++..++..+ .....+++..++-.|..+..--.     ...++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            98 655442      23455555433 45578888889989998811111     1677889999999999999999999


Q ss_pred             HHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCC--cchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCch
Q 042204          291 WALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSS--SVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKK  368 (559)
Q Consensus       291 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~--~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~  368 (559)
                      .+|.-++  .++....     ++..+-..|.+-++  .-....+..|+.+++.+...   -.+...+|.|...+.|+ -.
T Consensus       321 etLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999998  2333332     34555555554321  22334566777777655321   12337899999999999 99


Q ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHH
Q 042204          369 SIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAIS  421 (559)
Q Consensus       369 ~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~  421 (559)
                      .||..+..++..+.  .....+.+        ..++|-..+.+++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence            99999999998776  23322222        234455677888877766653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.77  E-value=0.019  Score=53.43  Aligned_cols=132  Identities=13%  Similarity=0.049  Sum_probs=94.0

Q ss_pred             hhhHhHHHHHHHHHHHh----hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204          239 HAKLSMLRTATWTLSNF----CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCP  314 (559)
Q Consensus       239 ~~~~~~~~~a~~~L~nL----~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~  314 (559)
                      +++..+...++.+|..+    ......-.......++|.|+.-+.+..+.++..+-.++..+....+       ...+++
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~  170 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTP  170 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHH
Confidence            44666666666555554    3322223333346788999999999899999888887766653111       113568


Q ss_pred             HHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCCh---HHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          315 RLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL---PYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       315 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      .+++-+.+.+++.+..++..++.+.......     ....+   +.+..++.+. +..||..|..++..+-.
T Consensus       171 ~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          171 MLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999887532211     23568   9999999998 99999999999987754

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.77  E-value=0.11  Score=49.43  Aligned_cols=199  Identities=13%  Similarity=0.075  Sum_probs=144.2

Q ss_pred             hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhH------hchHHHHHHhhccCCHhHHHHHHHHHHHh
Q 042204          223 VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQV------RPALPVLAQLVHSNDKEVLTDACWALYFL  296 (559)
Q Consensus       223 i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~------~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  296 (559)
                      +...+.+..|+..| ..-+.+.++.++.+++++.+.........+      ..++..|+..  .+++++...+-..|+..
T Consensus        74 i~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Ye~~diAl~~G~mLRec  150 (341)
T 1upk_A           74 LYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKG--YESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHG--GGSTTTHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHh--hccchhHhHHHHHHHHH
Confidence            34456677777777 566788899999999999987743332222      2222222222  34566666666666666


Q ss_pred             ccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC---CChHHHHHHhcCCCchhHHHH
Q 042204          297 SNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC---GALPYLLVLLIHSHKKSIKNH  373 (559)
Q Consensus       297 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~~v~~~  373 (559)
                      .. .+.....++..+.+-.+.+.+..++-.+...|..++..+.+........++..   .+...+..+|.++ +.-.|+.
T Consensus       151 ir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQ  228 (341)
T 1upk_A          151 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQ  228 (341)
T ss_dssp             HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHH
T ss_pred             HH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHH
Confidence            64 44455667787888889999999999999999999999888776655555543   4567788889998 9999999


Q ss_pred             HHHHHHHhhcC--CHHHHHHHH-HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          374 ACWTISKITAG--NREQIQAVI-DAGLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       374 a~~~L~nl~~~--~~~~~~~li-~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                      +...|+.+...  +.......+ +..-+..++.+|.+.+..+|-+|...+.-++.+
T Consensus       229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            99999999863  444444444 334588999999999999999999998877764

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.74  E-value=0.15  Score=46.31  Aligned_cols=185  Identities=10%  Similarity=0.122  Sum_probs=124.6

Q ss_pred             CHhHHHHHHHHHHHhccCChhHHHHHHHh-CcHHHHHHh-------hCCCCCc-----chhhHHHHHHHhhcCChHHHHH
Q 042204          282 DKEVLTDACWALYFLSNGKNDKIQAVIEA-GVCPRLVEL-------LGHRSSS-----VLSPALQTIGHIVAGDDFQTQC  348 (559)
Q Consensus       282 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~l-------L~~~~~~-----v~~~al~~L~nl~~~~~~~~~~  348 (559)
                      +++.++.|+.-|+.=-+..++....+... |.+..|++=       +..+.-.     -...|+..+..++++++ ....
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpe-tr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPE-TRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTT-THHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcc-hhhH
Confidence            45567777766666544444444444443 555554332       2222111     12346666777777555 4557


Q ss_pred             HHhCCChHHHHHHhcCCC----chhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 042204          349 IINCGALPYLLVLLIHSH----KKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNA  423 (559)
Q Consensus       349 ~~~~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl  423 (559)
                      ++++.+.-.|...|+...    -+-+|-.+..+++.+.. .+++.+..+++.+++|..++.++.++.-.|..|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            888888888888886542    24578888889998876 6889999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHH--------cCChHHHHh-cCCCCChHHHHHHHHHHHHHHHh
Q 042204          424 TSGGSHEQIKYLVR--------EKCIKPLCD-LLPCANPTIVTVCLKGLENILKV  469 (559)
Q Consensus       424 ~~~~~~~~~~~l~~--------~~~l~~L~~-lL~~~d~~v~~~~l~~l~~il~~  469 (559)
                      ..+  .....++..        ..++..++. +.+.+++++.+.+..+..++.+.
T Consensus       173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            873  333333222        113433333 44678899999999988887643

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.34  E-value=0.00039  Score=64.34  Aligned_cols=185  Identities=15%  Similarity=0.125  Sum_probs=123.8

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCC
Q 042204          149 EFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA  228 (559)
Q Consensus       149 ~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~  228 (559)
                      .++.+++ +.+|..++..|                  ....|..++.++++.||..++..|.      +           
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------~-----------  100 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------R-----------  100 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------S-----------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------H-----------
Confidence            4456667 89999998843                  1234777888999999998886421      0           


Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHH
Q 042204          229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVI  308 (559)
Q Consensus       229 l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  308 (559)
                       ..+..++ .+++..++..+...+       +.          +.+..+++++++.|+..+...   +.           
T Consensus       101 -~~L~~ll-~D~d~~VR~~aA~~l-------~~----------~~L~~L~~D~d~~VR~~aA~~---l~-----------  147 (244)
T 1lrv_A          101 -EQLSALM-FDEDREVRITVADRL-------PL----------EQLEQMAADRDYLVRAYVVQR---IP-----------  147 (244)
T ss_dssp             -GGGGGTT-TCSCHHHHHHHHHHS-------CT----------GGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred             -HHHHHHH-cCCCHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence             1233334 677888888777632       10          124456788889999888763   21           


Q ss_pred             HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHH
Q 042204          309 EAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQ  388 (559)
Q Consensus       309 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  388 (559)
                          .+.+..+++++++.||..++..++                  .+.+..++.++ ++.||..++..+          
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~-d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDP-EPEVRRIVASRL----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence                123446677788888888877511                  13344566777 899999888652          


Q ss_pred             HHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHH
Q 042204          389 IQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGL  463 (559)
Q Consensus       389 ~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l  463 (559)
                              ..+.|..++.++++.|+..++..+.                   .+.|..+ ++++..|+..+...|
T Consensus       195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                    1346777788999999998888753                   2345556 888899888876543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.87  E-value=0.2  Score=49.93  Aligned_cols=122  Identities=18%  Similarity=0.152  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHH
Q 042204          197 PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQ  276 (559)
Q Consensus       197 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~  276 (559)
                      ++...+..|+..+.....+-|..++.     ++..++++. .+.+..++..|+..|..+|++      ..+..+..+|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            56888999999999998888887665     478889988 778889999999999999987      336778889999


Q ss_pred             hhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 042204          277 LVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHI  338 (559)
Q Consensus       277 lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  338 (559)
                      +|+.+++.-...+-++|..+...++..        .+..+...+..+++.+|+.++..|..-
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~k  161 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTK  161 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            999999888888878887777555422        234444444445677888888877543

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.86  E-value=0.1  Score=47.09  Aligned_cols=146  Identities=17%  Similarity=0.072  Sum_probs=105.7

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhC-CCchhh
Q 042204          143 VVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAG-DSPRCR  220 (559)
Q Consensus       143 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~r  220 (559)
                      .++....+.+++. .++|..|+..|+.. ...         ..+++.+.. +-..++-.|++.+..+++.++. ..++. 
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-  139 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence            4566667777777 79999999998887 311         124566666 5567889999999999999984 44431 


Q ss_pred             hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204          221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK  300 (559)
Q Consensus       221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  300 (559)
                             .++.+.... .+++..+++.|+..+.--+.. + ........++|.|-.+..+++.-|+..+.|.|..++..+
T Consensus       140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                   355566665 788899999988776544432 1 112233557888888888889999999999999999998


Q ss_pred             hhHHHHHHHh
Q 042204          301 NDKIQAVIEA  310 (559)
Q Consensus       301 ~~~~~~~~~~  310 (559)
                      ++.+..+++.
T Consensus       210 Pd~V~~~~~~  219 (240)
T 3l9t_A          210 PDLVKIELKN  219 (240)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            8877666553

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.60  E-value=0.45  Score=43.25  Aligned_cols=190  Identities=13%  Similarity=0.107  Sum_probs=118.1

Q ss_pred             CCcchhhHHHHHHHhhcCChHHHHHHHhC-CChHHHHHHh-------cCCC-chhHHHHHHHH---HHHhhcCCHHHHHH
Q 042204          324 SSSVLSPALQTIGHIVAGDDFQTQCIINC-GALPYLLVLL-------IHSH-KKSIKNHACWT---ISKITAGNREQIQA  391 (559)
Q Consensus       324 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~-g~l~~L~~lL-------~~~~-~~~v~~~a~~~---L~nl~~~~~~~~~~  391 (559)
                      +++.|+.|+.-|+.=-..-+...-.+..+ |.+..|++=+       ..+. ....-...|.+   +-.++ ..++....
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence            34457777766665443333333334433 4444443322       1110 11122233333   33343 46788888


Q ss_pred             HHHcCCHHHHHHHhhcCC-----hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHH
Q 042204          392 VIDAGLIGPLINLLQNAE-----INIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI  466 (559)
Q Consensus       392 li~~~~i~~Li~lL~~~~-----~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~i  466 (559)
                      ++++++.-.|..+|...+     ..+|-.++..++.++..++++.+.++.+.++++.....++..+.--...|...+.+|
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            999998888888887543     478999999999999999999999999999999999999999988888999999999


Q ss_pred             HHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 042204          467 LKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILE  519 (559)
Q Consensus       467 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~  519 (559)
                      +..+....-...   ..+.+.....-.|  ..+..+..++++.+-+....+.-
T Consensus       173 L~dd~GL~YiC~---t~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYl  220 (268)
T 2fv2_A          173 LLDDTGLAYICQ---TYERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYL  220 (268)
T ss_dssp             HHSHHHHHHHTS---SHHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             hccchhHHHHHc---cHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHH
Confidence            866554321111   1111222211111  23445667788887665444433

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.59  E-value=0.19  Score=45.32  Aligned_cols=142  Identities=12%  Similarity=0.058  Sum_probs=102.3

Q ss_pred             hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHH-hhCCCCCcchhhHHHHHHHhhc-CChHH
Q 042204          268 RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE-LLGHRSSSVLSPALQTIGHIVA-GDDFQ  345 (559)
Q Consensus       268 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~-~~~~~  345 (559)
                      ...++....+.+++..+++..|+..|+.+ ....         .+++.+.. +-.+++..|+..+..+++.++. ..++ 
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            34555566667777789999999999888 2111         24566666 5566788999999999998884 2222 


Q ss_pred             HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-----CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHH
Q 042204          346 TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-----GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI  420 (559)
Q Consensus       346 ~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL  420 (559)
                             ..++.+...+.++ ++.+|+.|...+.-.+.     .+++.        +++.|-.+..+++..||+.+.|+|
T Consensus       139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~~--------ll~iL~~L~~D~s~yVrKSVan~L  202 (240)
T 3l9t_A          139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPNE--------AIRRIADLKEDVSEYVRKSVGNAL  202 (240)
T ss_dssp             -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHHH--------HHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHHH--------HHHHHHHhcCChHHHHHHHHHHHH
Confidence                   2567888899999 99999999877643322     12221        455566666778899999999999


Q ss_pred             HHHhcCCCHHHHHHHHH
Q 042204          421 SNATSGGSHEQIKYLVR  437 (559)
Q Consensus       421 ~nl~~~~~~~~~~~l~~  437 (559)
                      ..++.. .|+.+..+++
T Consensus       203 rD~SK~-~Pd~V~~~~~  218 (240)
T 3l9t_A          203 RDISKK-FPDLVKIELK  218 (240)
T ss_dssp             HHHHTT-CHHHHHHHHH
T ss_pred             HHHhhh-CHHHHHHHHH
Confidence            999987 6777666555

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.47  E-value=5  Score=46.15  Aligned_cols=301  Identities=10%  Similarity=0.062  Sum_probs=170.5

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC--
Q 042204           99 EIFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQYEAAWALTNIASK--  173 (559)
Q Consensus        99 ~~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~-~~~~~~~~~~a~~~L~nl~~~--  173 (559)
                      ..+..+++.+.++  +.+.+.+|-..|..+-..  +         .....+...|. .+.++.+|..|+..|.+....  
T Consensus        11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W   79 (1204)
T 3a6p_A           11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW   79 (1204)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence            4566666666555  677788888888875322  1         13344444443 333389999999999987642  


Q ss_pred             ---CchhHHHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhhhHhHHH
Q 042204          174 ---TSEDTKVVIDHGAVPIFVKLLAS---PNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHAKLSMLR  246 (559)
Q Consensus       174 ---~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~  246 (559)
                         +++.+..+ ...++..+......   ....++...+.++..|+... |..     =.+.++.++..+..  +.....
T Consensus        80 ~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~--~~~~~e  151 (1204)
T 3a6p_A           80 NGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ--GETQTE  151 (1204)
T ss_dssp             GGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT--CHHHHH
T ss_pred             ccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC--CHHHHH
Confidence               23333333 33455555543221   46889999999999987432 210     01346677777633  334566


Q ss_pred             HHHHHHHHhhcCC---CCCcHh-------h----HhchHHHHHHhhcc-------------------CCHhHHHHHHHHH
Q 042204          247 TATWTLSNFCRGM---PRPIFE-------Q----VRPALPVLAQLVHS-------------------NDKEVLTDACWAL  293 (559)
Q Consensus       247 ~a~~~L~nL~~~~---~~~~~~-------~----~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L  293 (559)
                      .++.+|..++...   ......       .    ...+++.+..++..                   .+..+...++.++
T Consensus       152 ~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l  231 (1204)
T 3a6p_A          152 LVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTL  231 (1204)
T ss_dssp             HHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHH
Confidence            6777787776531   111000       0    12334444444432                   1245667778888


Q ss_pred             HHhccCChhHHHHHHHhC--cHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh--HHHHHHHhC---CChHHHHHHhc---
Q 042204          294 YFLSNGKNDKIQAVIEAG--VCPRLVELLGHRSSSVLSPALQTIGHIVAGDD--FQTQCIINC---GALPYLLVLLI---  363 (559)
Q Consensus       294 ~~l~~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~~~~~---g~l~~L~~lL~---  363 (559)
                      .+....-+  ...+.+..  +++.+..++.  ++.++..|+.+|..++....  .....++..   ..+..++..+.   
T Consensus       232 ~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~  307 (1204)
T 3a6p_A          232 AGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAD  307 (1204)
T ss_dssp             HTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCC
T ss_pred             HHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCC
Confidence            76654433  12333433  7777777665  56789999999999997442  211112211   11234444432   


Q ss_pred             ----CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc-----------CCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 042204          364 ----HSHKKSIKNHACWTISKITAGNREQIQAVIDA-----------GLIGPLINLLQNAEINIKNWAAWAISNATSG  426 (559)
Q Consensus       364 ----~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~-----------~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~  426 (559)
                          +..+.++.+..+..+..+..    ....++..           ++++.++.+..+++..+-..++.....+...
T Consensus       308 ~~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          308 GGGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence                11145667777777777752    22333221           3577777777788878777777666656543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.45  E-value=0.54  Score=42.88  Aligned_cols=155  Identities=13%  Similarity=0.123  Sum_probs=94.9

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhc
Q 042204          104 MVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQYEAAWALTNIAS  172 (559)
Q Consensus       104 lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~~  172 (559)
                      +++.|++.. .......+..|+..+......-++.+ ..+++..|+.+|..    .      ...+.+.+++.||..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            455555432 22223345555555554333446666 46677777777653    1      125789999999999987


Q ss_pred             CCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hh-hhhhh----------ccCCHHHHHHHhchh
Q 042204          173 KTSEDTKVVID-HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RC-RDLVL----------SEEALIPLLAQLNEH  239 (559)
Q Consensus       173 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~l~~Ll~ll~~~  239 (559)
                       +......++. .+++..+...|.++++.++..++..|+.+|.... .. ...++          +..-+.+++..+...
T Consensus        84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A           84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence             5555565555 5678999999999999999999999999885543 11 22221          222455566666444


Q ss_pred             hhHhHHHHHHHHHHHhhcCCC
Q 042204          240 AKLSMLRTATWTLSNFCRGMP  260 (559)
Q Consensus       240 ~~~~~~~~a~~~L~nL~~~~~  260 (559)
                      .+.+.+..++..+..+....+
T Consensus       163 ~~~e~~~~~m~lIN~li~~~~  183 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPAE  183 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCC
T ss_pred             ChHHHHHHHHHHHHHHHCCCC
Confidence            445555555555555555443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.40  E-value=0.65  Score=45.84  Aligned_cols=157  Identities=13%  Similarity=0.115  Sum_probs=103.9

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHh
Q 042204          103 AMVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQYEAAWALTNIA  171 (559)
Q Consensus       103 ~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----------~~~~~~~~~a~~~L~nl~  171 (559)
                      .+++.|.++- .......+..|+.-+......-++.++ .+++..|+.+|..          ......+..++.||..+.
T Consensus        70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence            4566666543 233345667777766654344567776 6678888888852          112588999999999998


Q ss_pred             cCCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hh-hhhhh----------ccCCHHHHHHHhch
Q 042204          172 SKTSEDTKVVID-HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RC-RDLVL----------SEEALIPLLAQLNE  238 (559)
Q Consensus       172 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~l~~Ll~ll~~  238 (559)
                      . +......++. ...+..|...|.++++.++..++..|+.+|.... .. ...++          +..-+.+++..+..
T Consensus       149 N-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~  227 (383)
T 3eg5_B          149 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  227 (383)
T ss_dssp             S-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             c-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence            7 5555555555 5678999999999999999999999999996543 21 22222          23346677777754


Q ss_pred             hhhHhHHHHHHHHHHHhhcCCCC
Q 042204          239 HAKLSMLRTATWTLSNFCRGMPR  261 (559)
Q Consensus       239 ~~~~~~~~~a~~~L~nL~~~~~~  261 (559)
                      ..+.+.+..++..+..+....+.
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~~d  250 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPAEE  250 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCC
Confidence            45556666555555556665443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.28  E-value=0.93  Score=51.30  Aligned_cols=208  Identities=15%  Similarity=0.151  Sum_probs=125.1

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHHhC-CCchhhhhhhccCCHHHHHHHhchh---hhHhHHHHHHHHHHHhh----c
Q 042204          186 AVPIFVKLLASPNDDIREQAVWALGNVAG-DSPRCRDLVLSEEALIPLLAQLNEH---AKLSMLRTATWTLSNFC----R  257 (559)
Q Consensus       186 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~l~~Ll~ll~~~---~~~~~~~~a~~~L~nL~----~  257 (559)
                      ++..+.+++.+......+ |+++|..... -.|. .+      .+..+..++...   .++.++..++.+++.|.    .
T Consensus       357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt-~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~  428 (1056)
T 1lsh_A          357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQAT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  428 (1056)
T ss_dssp             HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCC-HH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence            345556666654433333 4444433221 1121 11      244555555322   23455666666665554    3


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-----C--CCcchhh
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-----R--SSSVLSP  330 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----~--~~~v~~~  330 (559)
                      ..+......+..+...+.+.+...+.+-+.-++.+|+|+..  +         ..++.|.+++..     .  ...++..
T Consensus       429 ~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~a  497 (1056)
T 1lsh_A          429 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAE  497 (1056)
T ss_dssp             TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHH
Confidence            33332333355666667777778888889999999999973  2         245667777642     1  2347788


Q ss_pred             HHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhc-C
Q 042204          331 ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQN-A  408 (559)
Q Consensus       331 al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~-~  408 (559)
                      |+++|..++...+...+        +.++.++. ..+++++|..|+..|..- ..+...         +..+...+.. .
T Consensus       498 Ai~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t-~P~~~~---------l~~ia~~l~~E~  559 (1056)
T 1lsh_A          498 AIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVAL---------VSMVAVRLRREP  559 (1056)
T ss_dssp             HHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHHH---------HHHHHHHHTTCS
T ss_pred             HHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHH-CcCHHH---------HHHHHHHHhhCc
Confidence            99999999876554433        45666763 333889999999888543 233443         3445555554 5


Q ss_pred             ChhHHHHHHHHHHHHhcCCCHH
Q 042204          409 EINIKNWAAWAISNATSGGSHE  430 (559)
Q Consensus       409 ~~~v~~~a~~aL~nl~~~~~~~  430 (559)
                      +..|...+...|.+++....|.
T Consensus       560 ~~QV~sfv~S~l~sla~s~~P~  581 (1056)
T 1lsh_A          560 NLQVASFVYSQMRSLSRSSNPE  581 (1056)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSGG
T ss_pred             hHHHHHHHHHHHHHHHhcCCcc
Confidence            7889999999999998876653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.01  E-value=0.37  Score=43.99  Aligned_cols=163  Identities=15%  Similarity=0.111  Sum_probs=109.0

Q ss_pred             ChHHHHHHHhCCChHHHHHHhcC----C------CchhHHHHHHHHHHHhhcCCHHHHHHHHH-cCCHHHHHHHhhcCCh
Q 042204          342 DDFQTQCIINCGALPYLLVLLIH----S------HKKSIKNHACWTISKITAGNREQIQAVID-AGLIGPLINLLQNAEI  410 (559)
Q Consensus       342 ~~~~~~~~~~~g~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~  410 (559)
                      +....+.+ ..+++..|+..|..    .      .+.....+++.+|..+. .+......++. .+.+..|...|.++++
T Consensus        33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~  110 (233)
T 2f31_A           33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVP  110 (233)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred             CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence            33444445 34666666666632    1      13456677888888875 45667777775 4568888888888899


Q ss_pred             hHHHHHHHHHHHHhcCCC----HHHH-H------HHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhccccc
Q 042204          411 NIKNWAAWAISNATSGGS----HEQI-K------YLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDT  478 (559)
Q Consensus       411 ~v~~~a~~aL~nl~~~~~----~~~~-~------~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~  478 (559)
                      .++..|+..|..++....    .+.+ .      ..-+..-...+++.+. ..+.+....++..+..++...+...    
T Consensus       111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~----  186 (233)
T 2f31_A          111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD----  186 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH----
T ss_pred             hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH----
Confidence            999999988877776432    1111 1      1122345677888886 4566888888888877776544322    


Q ss_pred             ccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 042204          479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEK  513 (559)
Q Consensus       479 ~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~  513 (559)
                         .-...+..+..+|..+.|++|....++++...
T Consensus       187 ---~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          187 ---FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             ---HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             ---HHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence               11236677889999999999999899887553

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=94.93  E-value=0.0053  Score=56.68  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHH
Q 042204          145 PRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVW  207 (559)
Q Consensus       145 ~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~  207 (559)
                      +.|..++++++ +.+|..++..+   .               .+.|..++++++..||..++.
T Consensus       101 ~~L~~ll~D~d-~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          101 EQLSALMFDED-REVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             GGGGGTTTCSC-HHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHHcCCC-HHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHH
Confidence            34666777777 78888877742   1               123555667777888877665

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.87  E-value=2.3  Score=39.09  Aligned_cols=102  Identities=8%  Similarity=0.068  Sum_probs=73.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+-.+++..+....+.+...+...+.++-..++....     .+++.++.+..+.+ .++|...+..+...+...++...
T Consensus        16 ~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~   89 (257)
T 3gs3_A           16 KVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP   89 (257)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444433378999999999976653222222     36777888766666 89999999999998865444333


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNV  212 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  212 (559)
                           .+++.|..+++++++.+...++.+.+++
T Consensus        90 -----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           90 -----HVINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             -----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                 3567888899999999999999988887

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.66  E-value=0.4  Score=45.45  Aligned_cols=180  Identities=15%  Similarity=0.205  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcC
Q 042204          285 VLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH  364 (559)
Q Consensus       285 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~  364 (559)
                      |...+...|.-+ -++.+.+.-++....+..+......++..+....+..|-..+.... ....- -...+|.++..+.-
T Consensus       259 VvtR~FDLL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~-L~e~LPFi~~~i~~  335 (619)
T 3c2g_A          259 VIIRTFDLLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTP-LENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSC-CTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhcc-ccccchHHHHHhcc
Confidence            344455445444 4667788899999999999999999999998888888877765322 11101 12568888888853


Q ss_pred             CCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-------ChhHHHHHHHHHHHHhc------------
Q 042204          365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-------EINIKNWAAWAISNATS------------  425 (559)
Q Consensus       365 ~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-------~~~v~~~a~~aL~nl~~------------  425 (559)
                      .++.++.......|+|..++........+..|.++.|...+...       +..-++.||..++|...            
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm  415 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPT  415 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred             CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEec
Confidence            33888999999999999998888777788899999999987532       33455666666666543            


Q ss_pred             -CC--------CHHHHHHHHHcCChHHHHhcCCCC--C-h---HHHHHHHHHHHHHH
Q 042204          426 -GG--------SHEQIKYLVREKCIKPLCDLLPCA--N-P---TIVTVCLKGLENIL  467 (559)
Q Consensus       426 -~~--------~~~~~~~l~~~~~l~~L~~lL~~~--d-~---~v~~~~l~~l~~il  467 (559)
                       +|        +..++..+++.++++.|+.+|+-+  | +   +++..++..+.-++
T Consensus       416 ~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl  472 (619)
T 3c2g_A          416 PNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL  472 (619)
T ss_dssp             TTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence             11        234556667778899999988543  2 2   55566666554444

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.48  E-value=0.95  Score=42.96  Aligned_cols=173  Identities=12%  Similarity=0.066  Sum_probs=101.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCC----HHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCch
Q 042204          144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGA----VPIFVKLLAS-PNDDIREQAVWALGNVAGDSPR  218 (559)
Q Consensus       144 v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~  218 (559)
                      +..+.++++-+.  +.++-++..+.-.+. ++.....+.+...    +..+...+.+ ..+..+-.++++++|+..... 
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            345555554333  556666666666655 4555444443222    2233444443 456678899999999976643 


Q ss_pred             hhhhhhccCCHHHHHHHhc---hhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhc-cCCHhHHHHHHHHH
Q 042204          219 CRDLVLSEEALIPLLAQLN---EHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVH-SNDKEVLTDACWAL  293 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~---~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L  293 (559)
                      .|+.+..  ....++..+.   .+.+..++..+...+.|++-.. ..........++..+..++. ..|.+....++.+|
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            5666554  2344444442   2346677778888888887532 11122333345555555564 45899999999999


Q ss_pred             HHhccCChhHHHHHHHhCcHHHHHHhhCC
Q 042204          294 YFLSNGKNDKIQAVIEAGVCPRLVELLGH  322 (559)
Q Consensus       294 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~  322 (559)
                      +++...+.+..+.....|+-..+-...+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99997766544433334555555444444

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.44  E-value=0.27  Score=46.72  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=70.4

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhh
Q 042204          146 RFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDH--GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLV  223 (559)
Q Consensus       146 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  223 (559)
                      .+...+.++..|..+..++++++|+.. ++..+..+...  .+++.+...+.+++..++..++..+.|++......++.-
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~  229 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE  229 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence            444555544447789999999999999 67777776652  345556666667889999999999999984211111100


Q ss_pred             hccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcC
Q 042204          224 LSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRG  258 (559)
Q Consensus       224 ~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~  258 (559)
                      .....+..+..++....+.+....++-+|.+|...
T Consensus       230 ~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          230 GKAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            00012333334443445667777777777777764

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.33  E-value=1.8  Score=43.25  Aligned_cols=201  Identities=15%  Similarity=0.137  Sum_probs=120.0

Q ss_pred             hhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh
Q 042204          240 AKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL  319 (559)
Q Consensus       240 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l  319 (559)
                      .+...++-|+..+.......|.    ....++..++.+..++|..|+..|+..|..+|..  +.+.     .+...|+++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql  108 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL  108 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence            3577888888888888877643    3356788899999999999999999999999965  3333     356889999


Q ss_pred             hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc------CCHHHHHHHH
Q 042204          320 LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA------GNREQIQAVI  393 (559)
Q Consensus       320 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~------~~~~~~~~li  393 (559)
                      |..+++.....+=.+|..+...++..        .+..+...+.++ ++.+|..+...|..-..      -+.+ .+.+ 
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E-~E~~-  177 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKE-VEEL-  177 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHH-HHHH-
T ss_pred             HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHH-HHHH-
Confidence            99888776666666666666555432        234444444445 67888887777754432      1222 1211 


Q ss_pred             HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH---hcCCCCChHHHHHHHHHHHHHH
Q 042204          394 DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC---DLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       394 ~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~---~lL~~~d~~v~~~~l~~l~~il  467 (559)
                         ++..+.++|++-..+=-...+..|..+-...++.....|++  ++....   .-+...|++.+...+.++..-+
T Consensus       178 ---i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~AL  249 (507)
T 3u0r_A          178 ---ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAV  249 (507)
T ss_dssp             ---HHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHG
T ss_pred             ---HHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHH
Confidence               33344445544332222333344444444444444444332  111111   2234456666666666555544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.32  E-value=0.53  Score=46.43  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=111.4

Q ss_pred             CChHHHHHHHhCCChHHHHHHhcC----------CCchhHHHHHHHHHHHhhcCCHHHHHHHHHc-CCHHHHHHHhhcCC
Q 042204          341 GDDFQTQCIINCGALPYLLVLLIH----------SHKKSIKNHACWTISKITAGNREQIQAVIDA-GLIGPLINLLQNAE  409 (559)
Q Consensus       341 ~~~~~~~~~~~~g~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~-~~i~~Li~lL~~~~  409 (559)
                      .+....+.+. .+++..|+.+|..          ..+...+.+++.+|..+. .+...+..++.+ ..+..|...+.+..
T Consensus        98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~  175 (383)
T 3eg5_B           98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV  175 (383)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTS
T ss_pred             CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCc
Confidence            3344555555 5667777777741          113466777888888885 456667777754 56889999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCHH----H-------HHHHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHHHhhhhhcccc
Q 042204          410 INIKNWAAWAISNATSGGSHE----Q-------IKYLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENILKVGEAEKNMD  477 (559)
Q Consensus       410 ~~v~~~a~~aL~nl~~~~~~~----~-------~~~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il~~~~~~~~~~  477 (559)
                      +.++..|+..|..++....++    .       ....-+..-...+++.|+. .+.+....++..+..++...+...   
T Consensus       176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~---  252 (383)
T 3eg5_B          176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD---  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH---
T ss_pred             hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH---
Confidence            999999999998887654311    1       1111234457888888876 577888888888888776554322   


Q ss_pred             cccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 042204          478 TAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHE  512 (559)
Q Consensus       478 ~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~  512 (559)
                          .--..+..+..+|..+.+.+|....++++..
T Consensus       253 ----~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          253 ----FRVHIRSELMRLGLHQVLQELREIENEDMKV  283 (383)
T ss_dssp             ----HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred             ----HHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence                1123567788999999999998888877643

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.99  E-value=3.5  Score=46.65  Aligned_cols=244  Identities=16%  Similarity=0.138  Sum_probs=138.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCc---HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGV---VPRFVEFLMREDYPQLQYEAAWALTNIASKTSE  176 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~---v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~  176 (559)
                      .+-.|++.|+.-+.+........+..- ...+....+.+...|-   +..+.+++.+.. ... .+|+++|..... ...
T Consensus       312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~~-~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~-~~~  387 (1056)
T 1lsh_A          312 KFLRLTAFLRNVDAGVLQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQ-LTS-AEATQIVASTLS-NQQ  387 (1056)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SCH-HHHHHHHHHHHH-TCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcc-HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CCH-HHHHHHHHHhhc-cCC
Confidence            445566666655544333333222210 0000122344444453   334455665544 222 335555554332 111


Q ss_pred             hHHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHHHHhC----CCchhhhhhhccCCHHHHHHHhc---hhhhHhHH
Q 042204          177 DTKVVIDHGAVPIFVKLLAS----PNDDIREQAVWALGNVAG----DSPRCRDLVLSEEALIPLLAQLN---EHAKLSML  245 (559)
Q Consensus       177 ~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~l~~Ll~ll~---~~~~~~~~  245 (559)
                      ...     ..+..+..++.+    .++.+++.|+.++++++.    ..+.+.     ...++++.+.+.   ...+..-.
T Consensus       388 Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~  457 (1056)
T 1lsh_A          388 ATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEI  457 (1056)
T ss_dssp             CCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHH
Confidence            111     234556667765    567888989999888863    222221     123455555543   23345566


Q ss_pred             HHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHH
Q 042204          246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS-------NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE  318 (559)
Q Consensus       246 ~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~  318 (559)
                      ..++.+|.|+-..          ..++.|.+++..       ....++..|+++|..+....+..++        +.+.+
T Consensus       458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~  519 (1056)
T 1lsh_A          458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLP  519 (1056)
T ss_dssp             HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHH
T ss_pred             HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHH
Confidence            7788999998652          356677777642       2356889999999999976654433        55666


Q ss_pred             hh--CCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC
Q 042204          319 LL--GHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGN  385 (559)
Q Consensus       319 lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  385 (559)
                      +.  ...+.++|..|+..|..  +..+.        ..+..+...+....+..|.....-.|.+++..+
T Consensus       520 i~~n~~e~~EvRiaA~~~Lm~--t~P~~--------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          520 IFLNVAIKSELRIRSCIVFFE--SKPSV--------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHCTTSCHHHHHHHHHHHHH--TCCCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HhcCCCCChHHHHHHHHHHHH--HCcCH--------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            66  34566788888877743  22221        125567777776558888888888888887743

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.93  E-value=2.2  Score=42.02  Aligned_cols=157  Identities=13%  Similarity=0.128  Sum_probs=99.2

Q ss_pred             HHHHHhcCCCHHH-HHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 042204          103 AMVAGVWSDDNNL-QLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQYEAAWALTNIA  171 (559)
Q Consensus       103 ~lv~~L~s~~~~~-~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~----~------~~~~~~~~a~~~L~nl~  171 (559)
                      .+++.|.+..... ....+..|+..+.......++.+. .+++..|+.+|..    .      .....+..++.||..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            4555566543222 233455666555544334466665 5677777777642    1      12578999999999998


Q ss_pred             cCCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hh-hhhhh----------ccCCHHHHHHHhch
Q 042204          172 SKTSEDTKVVID-HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RC-RDLVL----------SEEALIPLLAQLNE  238 (559)
Q Consensus       172 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~l~~Ll~ll~~  238 (559)
                      . +......++. .+++..+...|.++++.++..++..|+.+|.... .. ...++          +..-+.+++..+..
T Consensus        87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            8 5555555555 4678999999999999999999999999886543 21 22221          23345667777755


Q ss_pred             hhhHhHHHHHHHHHHHhhcCCCC
Q 042204          239 HAKLSMLRTATWTLSNFCRGMPR  261 (559)
Q Consensus       239 ~~~~~~~~~a~~~L~nL~~~~~~  261 (559)
                      +.+.+.+..++..+..+....+.
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~d  188 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAEE  188 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             CChHHHHHHHHHHHHHHHCCCCC
Confidence            55566666666666666665543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.56  E-value=3.2  Score=47.70  Aligned_cols=293  Identities=10%  Similarity=0.046  Sum_probs=160.1

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHHHHhCC-----Cch
Q 042204          146 RFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLL--ASPNDDIREQAVWALGNVAGD-----SPR  218 (559)
Q Consensus       146 ~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~  218 (559)
                      .+...+..+.++..|.+|-..|..+-. ++         .+...+...|  .+.+..+|..|+..|-|....     .++
T Consensus        16 ~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e   85 (1204)
T 3a6p_A           16 AVTVMMDPNSTQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL   85 (1204)
T ss_dssp             HHHHHHCTTCCHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence            333444432236788888888887755 22         1333344333  456789999999999987632     222


Q ss_pred             hhhhhhccCCHHHHHHHhchh------hhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHH
Q 042204          219 CRDLVLSEEALIPLLAQLNEH------AKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACW  291 (559)
Q Consensus       219 ~r~~i~~~g~l~~Ll~ll~~~------~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~  291 (559)
                      .+..+.     ..++..+...      .+..++..++.+++.+.... |    .....+++.++.++++ ++.....++.
T Consensus        86 ~k~~Ir-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~  155 (1204)
T 3a6p_A           86 EKVYLK-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMF  155 (1204)
T ss_dssp             HHHHHH-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHH
Confidence            222221     2344444322      34567777888888888764 3    1246778888888865 5566777888


Q ss_pred             HHHHhccC-------ChhHHHH---HHHh---CcHHHHHHhhCC-------------------CCCcchhhHHHHHHHhh
Q 042204          292 ALYFLSNG-------KNDKIQA---VIEA---GVCPRLVELLGH-------------------RSSSVLSPALQTIGHIV  339 (559)
Q Consensus       292 ~L~~l~~~-------~~~~~~~---~~~~---g~l~~L~~lL~~-------------------~~~~v~~~al~~L~nl~  339 (559)
                      +|..+++.       ...+...   .+..   .+++.+..++..                   .+..++..++.++.+..
T Consensus       156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l  235 (1204)
T 3a6p_A          156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYI  235 (1204)
T ss_dssp             HHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence            88887632       1111111   1111   123333333322                   12235566777777665


Q ss_pred             cCChHHHHHHHhCC--ChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHHHc---CCHHHHHHHhh------
Q 042204          340 AGDDFQTQCIINCG--ALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVIDA---GLIGPLINLLQ------  406 (559)
Q Consensus       340 ~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li~~---~~i~~Li~lL~------  406 (559)
                      .--+.  ..+.+..  .++.+..++.   ++.++..|+.+|..++..  .++....++..   ..+..++..+.      
T Consensus       236 ~Wi~~--~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~  310 (1204)
T 3a6p_A          236 DWVSM--SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG  310 (1204)
T ss_dssp             TTSCH--HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS
T ss_pred             hccCH--HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC
Confidence            43221  2233332  6666666554   457899999999999873  24433333321   01234455432      


Q ss_pred             --cCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-----------cCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          407 --NAEINIKNWAAWAISNATSGGSHEQIKYLVR-----------EKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       407 --~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                        +.+.++.+..+..+..+..    . ...++.           .++++.+..+..+++..+...++..-..+++
T Consensus       311 ~~e~d~e~~k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~  380 (1204)
T 3a6p_A          311 LVEKHYVFLKRLCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR  380 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred             CccHHHHHHHHHHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence              1245677777777777652    1 111111           1246666666666666666666655444443

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=93.08  E-value=4.7  Score=39.42  Aligned_cols=88  Identities=9%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh
Q 042204          114 NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL  193 (559)
Q Consensus       114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l  193 (559)
                      +.+...+..++.++-.. ++.    .-..+++.++++-.+.+ .++|...+..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46888899999975543 332    22468999999988887 89999999999988875444432     356788889


Q ss_pred             hCCCCHHHHHHHHHHHHHH
Q 042204          194 LASPNDDIREQAVWALGNV  212 (559)
Q Consensus       194 L~~~~~~v~~~a~~~L~nl  212 (559)
                      |.++++.+...++.+.+++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            9999999999999998887

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.78  E-value=2.5  Score=41.72  Aligned_cols=160  Identities=16%  Similarity=0.103  Sum_probs=106.2

Q ss_pred             HHHHHHHhCCChHHHHHHhcC----C------CchhHHHHHHHHHHHhhcCCHHHHHHHHHc-CCHHHHHHHhhcCChhH
Q 042204          344 FQTQCIINCGALPYLLVLLIH----S------HKKSIKNHACWTISKITAGNREQIQAVIDA-GLIGPLINLLQNAEINI  412 (559)
Q Consensus       344 ~~~~~~~~~g~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~li~~-~~i~~Li~lL~~~~~~v  412 (559)
                      ...+.+. .+++..|+..|..    .      .+.....+++.+|..+. .+......++.. ..+..|...|.+..+.+
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~  116 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNM  116 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            3444443 3556666666531    1      13456777888888885 456667777754 56888888888889999


Q ss_pred             HHHHHHHHHHHhcCCCHH----H-HH------HHHHcCChHHHHhcCC-CCChHHHHHHHHHHHHHHHhhhhhccccccc
Q 042204          413 KNWAAWAISNATSGGSHE----Q-IK------YLVREKCIKPLCDLLP-CANPTIVTVCLKGLENILKVGEAEKNMDTAI  480 (559)
Q Consensus       413 ~~~a~~aL~nl~~~~~~~----~-~~------~l~~~~~l~~L~~lL~-~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~  480 (559)
                      +..++..|..++....++    . ..      ..-+..-...|++.+. ..+.+....++..+..++...+...      
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~------  190 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------  190 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH------
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH------
Confidence            999988887777653311    1 11      1122345677888786 4566888888888888776654322      


Q ss_pred             CcchHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 042204          481 GDVNQYAQLVEEAEGLEKIENLQSHENNEIHE  512 (559)
Q Consensus       481 ~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~  512 (559)
                       .-...+..+..+|..+.|++|....++++..
T Consensus       191 -~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~  221 (386)
T 2bnx_A          191 -FRVHIRSELMRLGLHQVLQELREIENEDMKV  221 (386)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             -HHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence             1233677788999999999999888887744

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=87.01  E-value=5.4  Score=37.26  Aligned_cols=148  Identities=10%  Similarity=0.063  Sum_probs=93.6

Q ss_pred             HHHHHHhhccC------CHhHHHHHHHHHHHhccCChhHHHHHHH--hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 042204          271 LPVLAQLVHSN------DKEVLTDACWALYFLSNGKNDKIQAVIE--AGVCPRLVELLGHRSSSVLSPALQTIGHIVAGD  342 (559)
Q Consensus       271 l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  342 (559)
                      +..+..++++.      |......++..|..++.. -..--.+++  ..++..|+ +.....+.+++.|.++|+....++
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN  101 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN  101 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence            33444555554      455678888888888743 223233443  33444444 333455678999999999999999


Q ss_pred             hHHHHHHHhC--CChHHHHHHhcC----C--CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC--ChhH
Q 042204          343 DFQTQCIINC--GALPYLLVLLIH----S--HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA--EINI  412 (559)
Q Consensus       343 ~~~~~~~~~~--g~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~--~~~v  412 (559)
                      +.....+.+.  .++..+..-|..    +  ....+++.-+.+|.-++..+..    + ....+..|.+++...  +..+
T Consensus       102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~  176 (315)
T 3qml_C          102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQL  176 (315)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHH
Confidence            9887777653  334444333322    1  1345677777888877654321    1 134667888888777  8999


Q ss_pred             HHHHHHHHHHHhc
Q 042204          413 KNWAAWAISNATS  425 (559)
Q Consensus       413 ~~~a~~aL~nl~~  425 (559)
                      |..++..+..+..
T Consensus       177 k~Kvl~li~d~f~  189 (315)
T 3qml_C          177 QIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999988773

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=85.54  E-value=19  Score=35.23  Aligned_cols=232  Identities=15%  Similarity=0.082  Sum_probs=114.1

Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      ....++...+-.|+.++.++++.-|+..-.+|.+|-+.-...|..+.. .+-..+.+.+.......-....+.++..+..
T Consensus       122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin  200 (403)
T 3fga_B          122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN  200 (403)
T ss_dssp             HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence            344455567888999999999999999999999887655555544432 1122333333222222223345556666666


Q ss_pred             CCCCCc-HhhHhchHHHHHHhhccCCHhH-HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-C--CCcchhhHH
Q 042204          258 GMPRPI-FEQVRPALPVLAQLVHSNDKEV-LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-R--SSSVLSPAL  332 (559)
Q Consensus       258 ~~~~~~-~~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~--~~~v~~~al  332 (559)
                      +...+. .+...-...+|+.|-+...-.. -.....++......++.....        .+-.+|++ +  +..-...-+
T Consensus       201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~KevlFL  272 (403)
T 3fga_B          201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEVMFL  272 (403)
T ss_dssp             HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH--------HHHHHHHhCCCCCcHHHHHHH
Confidence            552222 2233333444555554433221 122333333333333333221        12222322 1  211112233


Q ss_pred             HHHHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc---CCHHHHHHHhhc-
Q 042204          333 QTIGHIVAGD-DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA---GLIGPLINLLQN-  407 (559)
Q Consensus       333 ~~L~nl~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~---~~i~~Li~lL~~-  407 (559)
                      .-|..+...- +...+.+.. .+...+...+.++ +..|.+.|.....     + +.+..++..   .++|.+...|.. 
T Consensus       273 ~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~-hfqVAErAL~~wn-----N-e~i~~li~~n~~~IlPii~p~L~~~  344 (403)
T 3fga_B          273 NELEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWN-----N-EYIMSLISDNAAKILPIMFPSLYRN  344 (403)
T ss_dssp             HHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGG-----C-HHHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCC-CHHHHHHHHHHhc-----c-HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3344444322 222222222 3566777778888 8888887765442     1 223333322   245555555422 


Q ss_pred             ---C-ChhHHHHHHHHHHHHhcC
Q 042204          408 ---A-EINIKNWAAWAISNATSG  426 (559)
Q Consensus       408 ---~-~~~v~~~a~~aL~nl~~~  426 (559)
                         . +..++..+..++.-+...
T Consensus       345 ~~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          345 SKTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             TSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccCHHHHHHHHHHHHHHHHh
Confidence               2 567777777777766543

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=83.59  E-value=3.5  Score=33.84  Aligned_cols=78  Identities=6%  Similarity=0.148  Sum_probs=53.2

Q ss_pred             ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHh-ccHHHHHHHhcCCC--------HHH
Q 042204          440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEA-EGLEKIENLQSHEN--------NEI  510 (559)
Q Consensus       440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~-g~l~~l~~L~~~~~--------~~v  510 (559)
                      +++.|..-|+.+++.++..+|.+|..++..+.            ..+...+.+. ..+..+.+.+..++        ..|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs------------~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V  117 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSG------------SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV  117 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC------------HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCC------------HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence            56677788888899999999999999886542            3345555443 22333333333333        779


Q ss_pred             HHHHHHHHHhhcCCCCCCC
Q 042204          511 HEKSVKILETYWCGRVVGP  529 (559)
Q Consensus       511 ~~~a~~il~~~f~~~~~~~  529 (559)
                      +++|..+++-.|+.+...+
T Consensus       118 R~~AkEl~~ll~d~~~~~~  136 (140)
T 1vdy_A          118 RETAHETISAIFSEENGSG  136 (140)
T ss_dssp             HHHHHHHHHHHTCCSSCCC
T ss_pred             HHHHHHHHHHHhCcCCCCC
Confidence            9999999999998766543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=83.38  E-value=2.5  Score=34.93  Aligned_cols=72  Identities=6%  Similarity=0.021  Sum_probs=57.3

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                      .+..|.+-|.++++.++..|+..|-.+..++.+.....+....++..|..++...++.|+..++..+.....
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            355567778888999999999999999988877777666666777778888777788999999988876543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.72  E-value=3  Score=35.41  Aligned_cols=74  Identities=11%  Similarity=0.038  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  172 (559)
                      .++..|.+.|++.++..++.|+..|-.++.+-......++....++..|+.++....++.++..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            47788888999999999999999999988764344566777778888899988764448999988888776664

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=81.42  E-value=32  Score=31.45  Aligned_cols=138  Identities=14%  Similarity=0.180  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc
Q 042204          369 SIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDL  447 (559)
Q Consensus       369 ~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l  447 (559)
                      +.+.....-+..++.. ++....     ++++.++.+..+.+.++|+..+..|...+.. .++....     +++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~-----~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPH-----VINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHH
Confidence            4555555555554432 332222     2566666666677889999999988877753 2233222     67788888


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhhhhhcccccccCc----chHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          448 LPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGD----VNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       448 L~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~----~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      ++++|+.+++.+..+..++....-..--.   .+.    ....+..+.+.  -+.|-.+..+.|.-|+-.|.+.++++.
T Consensus        99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~---~~~~~~~~~~~W~~m~~l--K~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIYKNGLQYLCS---LMEPGDSAEQAWNILSLI--KAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHTT---SSSCCHHHHHHHHHHHHH--HHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHHH--HHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            99899999999888888776553322111   011    23445555433  467777788999999999999998854

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=81.06  E-value=34  Score=34.03  Aligned_cols=227  Identities=12%  Similarity=0.082  Sum_probs=113.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-----
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKT-----  174 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~-----  174 (559)
                      -+-.|+..+.|+|+..+..--..|.++-..  -......+...+-..+.+++-......-..+.+++++.|..|.     
T Consensus       163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLK  240 (449)
T 2npp_B          163 FVLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK  240 (449)
T ss_dssp             HHHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCC
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCc
Confidence            355677777777777776666666655332  1222222222234455555544332344557778888887763     


Q ss_pred             chhHHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHH
Q 042204          175 SEDTKVVIDHGAVPIFVKLLASPN-DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS  253 (559)
Q Consensus       175 ~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~  253 (559)
                      .+.+..+     ...|+.+.+.+. .....+-..++..+...+|.....     ++..|++.= ..++..-...-+.-+.
T Consensus       241 eehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~ele  309 (449)
T 2npp_B          241 EEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELE  309 (449)
T ss_dssp             HHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHH
Confidence            2222222     234444444432 222334555555555444443222     122333221 1111111111233344


Q ss_pred             HhhcCCCCCcHh-hHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHh---CcHHHHHHhhCC-----CC
Q 042204          254 NFCRGMPRPIFE-QVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEA---GVCPRLVELLGH-----RS  324 (559)
Q Consensus       254 nL~~~~~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~-----~~  324 (559)
                      .+....+...+. ....+...+...+.+.+..|.+.|+....     ++ .+-.++..   .++|.+..-|..     =+
T Consensus       310 eile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~-~i~~li~~n~~~IlPii~p~L~~~s~~HWn  383 (449)
T 2npp_B          310 EILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSLYRNSKTHWN  383 (449)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHHTSCTTCCSS
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CH-HHHHHHHhchhhhHHhhHHHHHHHHHHhcC
Confidence            444433222222 33567777888888999999888864432     12 22222221   255766665533     24


Q ss_pred             CcchhhHHHHHHHhhcCChHH
Q 042204          325 SSVLSPALQTIGHIVAGDDFQ  345 (559)
Q Consensus       325 ~~v~~~al~~L~nl~~~~~~~  345 (559)
                      ..++..|..++.-+...+...
T Consensus       384 ~~V~~la~~vlk~l~e~d~~l  404 (449)
T 2npp_B          384 KTIHGLIYNALKLFMEMNQKL  404 (449)
T ss_dssp             TTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCHHH
Confidence            568888888888777766643

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=80.93  E-value=3.6  Score=34.90  Aligned_cols=71  Identities=11%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             ChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 042204          440 CIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSH-ENNEIHEKSVKIL  518 (559)
Q Consensus       440 ~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~-~~~~v~~~a~~il  518 (559)
                      ++..|..-|.+.++.++..+|..|..+++....            .+...+..-..++.+..+... .++.|++++..+|
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~------------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li  120 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK------------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM  120 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH------------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH------------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            455666667889999999999999999876432            355556556666777666544 7789999999999


Q ss_pred             Hhhc
Q 042204          519 ETYW  522 (559)
Q Consensus       519 ~~~f  522 (559)
                      +.+-
T Consensus       121 ~~W~  124 (163)
T 1x5b_A          121 VEWS  124 (163)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=80.42  E-value=6.4  Score=36.78  Aligned_cols=133  Identities=13%  Similarity=0.109  Sum_probs=86.1

Q ss_pred             chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh--cCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc--CCHHHHH
Q 042204          327 VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL--IHSHKKSIKNHACWTISKITAGNREQIQAVIDA--GLIGPLI  402 (559)
Q Consensus       327 v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~--~~i~~Li  402 (559)
                      ....|+..|.-++..-....+ ++.+. ...|..++  ... .+.+++.|+.+|+.....+|..+..+.+.  .++..++
T Consensus        44 ~le~aLD~L~ElSHDi~~G~K-I~~~e-f~lL~nL~~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYK-IITHE-FALLANLSLNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHH-HHHHH-HHHHHHHHHCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhH-HHhCc-HHHHHHHHhhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            345677777777764443333 33211 33343333  334 67899999999999999999999988753  4555555


Q ss_pred             HHhhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC--ChHHHHHHHHHHHHHHH
Q 042204          403 NLLQN-------AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA--NPTIVTVCLKGLENILK  468 (559)
Q Consensus       403 ~lL~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~~l~~l~~il~  468 (559)
                      .-|..       ...-+++.-+.+|.-|+...  ..   + ....+..|..++...  ++.++..++..+..++.
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS--ED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            55443       23466777788888887753  11   1 133456666666555  89999999999999885

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=80.13  E-value=2.7  Score=34.68  Aligned_cols=73  Identities=12%  Similarity=0.090  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~  172 (559)
                      .++..+.+.|++.++..++.|+..|..++..-......++....++..++.+++..+ +.++..++..+...+.
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence            467778888888888889998888888776543344555656667778888887666 8888888887776654

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=80.11  E-value=50  Score=32.86  Aligned_cols=235  Identities=14%  Similarity=0.067  Sum_probs=122.3

Q ss_pred             chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          175 SEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       175 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                      +......++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-....+.++..
T Consensus       152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS  230 (449)
T 2npp_B          152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS  230 (449)
T ss_dssp             STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence            3334555666788899999999999999999999988876655555554321 223344444322222334456667777


Q ss_pred             hhcCCCCC-cHhhHhchHHHHHHhhccCCHhH-HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCC-CCCcch--h
Q 042204          255 FCRGMPRP-IFEQVRPALPVLAQLVHSNDKEV-LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH-RSSSVL--S  329 (559)
Q Consensus       255 L~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~--~  329 (559)
                      +..+...+ ..+...-...+|+.|.+...-.. -.....++......++.....        .+-.+|++ +.....  .
T Consensus       231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~Kev  302 (449)
T 2npp_B          231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEV  302 (449)
T ss_dssp             HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHH
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH--------HHHHHHHhCCCCCchHHH
Confidence            77776322 22333334455555555443222 122223333333333333221        22222332 211122  2


Q ss_pred             hHHHHHHHhhcCC-hHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHc---CCHHHHHHHh
Q 042204          330 PALQTIGHIVAGD-DFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA---GLIGPLINLL  405 (559)
Q Consensus       330 ~al~~L~nl~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~---~~i~~Li~lL  405 (559)
                      .-+.-|..+...- +...+.+.. -+...+...+.++ +..|.+.|+....     ++ .+..++..   .++|.++..|
T Consensus       303 lFL~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w~-----N~-~i~~li~~n~~~IlPii~p~L  374 (449)
T 2npp_B          303 MFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSL  374 (449)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHC-----CH-HHHHHHHhchhhhHHhhHHHH
Confidence            2333444444322 222222222 3566777788888 8888888765442     22 22233322   2456666655


Q ss_pred             hcC-----ChhHHHHHHHHHHHHhcC
Q 042204          406 QNA-----EINIKNWAAWAISNATSG  426 (559)
Q Consensus       406 ~~~-----~~~v~~~a~~aL~nl~~~  426 (559)
                      ...     +..++..|..++.-+...
T Consensus       375 ~~~s~~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          375 YRNSKTHWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             TSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            321     456777777777655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	559
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-100
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-83
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-35
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-15
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-12
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-04
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	8e-12
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-08
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.001
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.003

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  311 bits (797), Expect = e-100
 Identities = 241/467 (51%), Positives = 310/467 (66%), Gaps = 14/467 (2%)

Query: 66  KKESFLRKRR-------EAPPSQQFLSFAPAPNLNLQTRLEIFAAMVAGVWSDDNNLQLE 118
           K++  L KRR        A   ++  S   A         +    M   + SDD   QL 
Sbjct: 36  KRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLS 95

Query: 119 ATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT 178
           AT KFR++LS E  PPI+ VIQ+GVVPR VEF+       LQ EAAWALTNIAS TS  T
Sbjct: 96  ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155

Query: 179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE 238
           KVV+D  AVP+F++LL + + +++EQA+WALGNVAGDS   RD VL   A+ P+L  L  
Sbjct: 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL-GLFN 214

Query: 239 HAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLS 297
             K S++RTATWTLSN CRG  P+P +  V  ALP LA+L++S D E L DACWA+ +LS
Sbjct: 215 SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 274

Query: 298 NGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPY 357
           +G  + IQAVI+  +  RLVELL H S+ V +PAL+ +G+IV G+D QTQ +IN G LP 
Sbjct: 275 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPA 334

Query: 358 LLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAA 417
            L LL+ S K++IK  ACWTIS ITAGN EQIQAVIDA LI PL+ LL+ AE   K  A 
Sbjct: 335 -LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 393

Query: 418 WAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKN 475
           WAISNA+SGG    + I+YLV + CIKPLCDLL  A+  I+ V L  LENILK+GEA+K 
Sbjct: 394 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 453

Query: 476 MDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW 522
                 ++N+ A  +E+A G+EKI N Q +EN++I+EK+ KI+ETY+
Sbjct: 454 ARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 498

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  264 bits (675), Expect = 2e-83
 Identities = 193/425 (45%), Positives = 274/425 (64%), Gaps = 13/425 (3%)

Query: 103 AMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYE 162
            +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +Q+E
Sbjct: 17  DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFE 76

Query: 163 AAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDL 222
           +AWALTNIAS TSE TK V+D GA+P F+ LLASP+  I EQAVWALGN+AGD    RDL
Sbjct: 77  SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 136

Query: 223 VLSEEALIPLLAQLN----EHAKLSMLRTATWTLSNFCRGMPR-PIFEQVRPALPVLAQL 277
           V+   A+ PLLA L            LR  TWTLSN CR     P  + V   LP L +L
Sbjct: 137 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196

Query: 278 VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH 337
           +H ND EVL D+CWA+ +L++G N++I+ V++ GV P+LV+LLG     +++PAL+ IG+
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256

Query: 338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGL 397
           IV G D QTQ +I+ GAL     LL +  K +I+  A WT+S ITAG ++QIQ V++ GL
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315

Query: 398 IGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT 457
           +  L+ +L  A+   +  AAWAI+N TSGG+ EQI YLV    I+PL +LL   +  I+ 
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375

Query: 458 VCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKI 517
           V L  + NI +  E        +G+  + + ++EE  GL+KIE LQ HEN  +++ S+ +
Sbjct: 376 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 428

Query: 518 LETYW 522
           +E Y+
Sbjct: 429 IEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (341), Expect = 2e-35
 Identities = 58/446 (13%), Positives = 127/446 (28%), Gaps = 68/446 (15%)

Query: 144 VPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIRE 203
           +P+ V++L  +D  + Q   A+ + +   +     + V   G +   V LL SPN ++++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 204 QAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPI 263
            A  AL N+   S   +     +  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 264 FEQVRPALPVLAQLV---------------HSNDKEVLTDACWALYFLSNGKNDKIQAVI 308
                    +  +++                  D EV  +A   L  LS+    +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 309 EAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVL------- 361
            +G+   L+  + +  ++           +    +   +           L         
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 362 ------LIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNW 415
                    +    + N+           N +    +  +  I   +NL+  ++ +    
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 416 AAWAISNATSGGSHEQIKY-----LVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVG 470
           A        +               ++EK +  +  LL   N  +V      L N+ +  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 471 EAEKNMDTAI---------------------------------GDVNQYAQLVEEAEGLE 497
              + M   +                                     Q A+    +  L 
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 498 KIENL-QSHENNEIHEKSVKILETYW 522
            I NL +S  + +  E +  +L   W
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 1e-12
 Identities = 36/310 (11%), Positives = 86/310 (27%), Gaps = 32/310 (10%)

Query: 141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDD 200
           SG              P++ + A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 201 IREQAVWALGNVAGDS-----------------PRCRDLVLSEEALIPLLAQLNEHAKLS 243
            R         +                             +E++     +  ++    +
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 244 MLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDK 303
                        +G               L  +  S     L     AL  L+  K   
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTY--LNLMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 304 IQA-----VIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYL 358
                    ++    P++  LL   +S V+      + ++          ++     P +
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEV 376

Query: 359 LVLLIHSHKKS-----IKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAE-INI 412
             LL      +     I + AC+T+  + A   +  +    + ++  +INL +++     
Sbjct: 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

Query: 413 KNWAAWAISN 422
              A   +S+
Sbjct: 437 AEAARLLLSD 446

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 4e-18
 Identities = 40/261 (15%), Positives = 92/261 (35%), Gaps = 1/261 (0%)

Query: 185 GAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSM 244
            A+P   KLL   +  +  +A   +  ++        ++ S + +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 245 LRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKI 304
            R    TL N        +       +P L +++ S    VL  A   L+ L   +    
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364
            AV  AG   ++V LL   +   L+     +  +  G+      I+  G    L+ ++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 365 SHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNAT 424
              + +       + K+ +       A+++AG +  L   L +    +     W + N +
Sbjct: 197 YTYEKLLWTTSR-VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 425 SGGSHEQIKYLVREKCIKPLC 445
              + ++    +    ++ L 
Sbjct: 256 DAATKQEGMEGLLGTLVQLLG 276

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (204), Expect = 1e-17
 Identities = 64/400 (16%), Positives = 135/400 (33%), Gaps = 18/400 (4%)

Query: 139 IQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPN 198
           + +  +P   + L  ED   +  +AA  +  ++ K +    ++     V   V+ + + N
Sbjct: 14  LATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 199 D-DIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR 257
           D +        L N++         +     +  L+  L      S+L  A  TL N   
Sbjct: 73  DVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLL 130

Query: 258 GMPRPIFEQVRP-ALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRL 316
                         L  +  L++  + + L      L  L+ G  +    ++ +G    L
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190

Query: 317 VELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACW 376
           V ++   +   L      +  +++        I+  G +  L + L    ++ ++N   W
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC-LW 249

Query: 377 TISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLV 436
           T+  ++    +Q       GL+G L+ LL + +IN+   AA  +SN T      ++    
Sbjct: 250 TLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV-C 305

Query: 437 REKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL 496
           +   I+ L   +  A                    A +++ +   +       V    GL
Sbjct: 306 QVGGIEALVRTVLRAGDREDITE--------PAICALRHLTSRHQEAEMAQNAVRLHYGL 357

Query: 497 EKIENLQSHENNEIHEKSVKILETYWCGRVVGPQPGPQPG 536
             +  L    ++    K+   L            P  + G
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 397

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 2e-16
 Identities = 57/474 (12%), Positives = 113/474 (23%), Gaps = 82/474 (17%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTN 169
           ++D             L        +  + +SG +P  V+ L       + + A   L N
Sbjct: 71  TNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHN 127

Query: 170 IASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL 229
           +          V   G +   V LL   N          L  +A  +   + ++L+    
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 230 IPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDA 289
             L+  +  +    +L T +  L                  +  L   +    + ++ + 
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 290 CWALYFLSNGKNDKI---------------------------------------QAVIEA 310
            W L  LS+    +                                          V + 
Sbjct: 248 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307

Query: 311 GVCPRLVELLGHRSSSVLSP-----ALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
           G    LV  +               AL+ +       +     +     LP ++ LL   
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATS 425
               +       I  +          + + G I  L+ LL  A  + +   +   +    
Sbjct: 368 SHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426

Query: 426 GGS--------------------HEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLEN 465
                                        +     I     LL      I  V    L  
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486

Query: 466 ILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILE 519
           + +  E               A+ +E       +  L    N  +   +  +L 
Sbjct: 487 LAQDKE--------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (187), Expect = 2e-15
 Identities = 69/390 (17%), Positives = 128/390 (32%), Gaps = 12/390 (3%)

Query: 110 SDDNNLQLEATTKFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQYEAAWALT 168
            +D  +  +A     +L   E       +++S  +V   V  +   +  +     A  L 
Sbjct: 28  DEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH 85

Query: 169 NIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEA 228
           N+ S   E    +   G +P  VK+L SP D +   A+  L N+       +  V     
Sbjct: 86  NL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 144

Query: 229 LIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTD 288
           L  ++A LN+     +  T               +          L  ++ +   E L  
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204

Query: 289 ACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQC 348
               +  + +  +    A++EAG    L   L   S  ++   L T+ ++          
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL----SDAATK 260

Query: 349 IINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA 408
                 L   LV L+ S   ++   A   +S +T  N +    V   G I  L+  +  A
Sbjct: 261 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320

Query: 409 EINIKN--WAAWAISNATSGGSHEQIKY--LVREKCIKPLCDLLPCANPTIVTVCLKGLE 464
                    A  A+ + TS     ++    +     +  +  LL   +   +     GL 
Sbjct: 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 380

Query: 465 NILKVGEAEKNMDTAIGDVNQYAQLVEEAE 494
             L +  A        G + +  QL+  A 
Sbjct: 381 RNLALCPANHAPLREQGAIPRLVQLLVRAH 410

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 8e-14
 Identities = 58/362 (16%), Positives = 110/362 (30%), Gaps = 25/362 (6%)

Query: 127 LSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGA 186
           L+         ++ SG     V  +    Y +L       +  + S  S +   +++ G 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 187 VPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLR 246
           +      L  P+  + +  +W L N++  + +   +      L+ LL   + +       
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 247 TATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK--EVLTDACWALYFLSNGKNDKI 304
             +    N  +            AL          +   E    A   L           
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIH 364
            AV      P +V+LL   S   L  A   +   +A        +   GA+P L+ LL+ 
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 365 SHKKSIKNHACWTISK--------------------ITAGNREQIQAVIDAGLIGPLINL 404
           +H+ + +  +     +                    I A +      +     I   + L
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468

Query: 405 LQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLE 464
           L +   NI+  AA  +         E  + +  E    PL +LL   N  + T     L 
Sbjct: 469 LYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 465 NI 466
            +
Sbjct: 527 RM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (167), Expect = 5e-13
 Identities = 27/223 (12%), Positives = 73/223 (32%), Gaps = 2/223 (0%)

Query: 301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLV 360
           N +  A +     P L +LL      V++ A   +  +   +  +   + +   +  ++ 
Sbjct: 7   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66

Query: 361 LLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI 420
            + +++          T+  ++  +RE + A+  +G I  L+ +L +   ++  +A   +
Sbjct: 67  TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125

Query: 421 SNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAI 480
            N            +     ++ +  LL   N   + +    L+ +    +  K +  A 
Sbjct: 126 HNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184

Query: 481 GDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWC 523
           G       ++      + +              S K       
Sbjct: 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 4e-09
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           L+ +      +   ++ +     +F+      ++      AL  +A +   +  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLN 460

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
            +P+FV+LL SP ++I+  A   L  +A D     + + +E A    L +L       + 
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGA-TAPLTELLHSRNEGVA 518

Query: 246 RTATWTLSN 254
             A   L  
Sbjct: 519 TYAAAVLFR 527

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 7e-09
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA 195
             +     +P FV+ L+      +Q  AA  L  +A +  E  + +   GA     +LL 
Sbjct: 454 IVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLH 511

Query: 196 SPNDDIREQAVWALGNVA 213
           S N+ +   A   L  ++
Sbjct: 512 SRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (183), Expect = 1e-15
 Identities = 39/243 (16%), Positives = 79/243 (32%), Gaps = 3/243 (1%)

Query: 129 IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVP 188
           +E+      V+   + P   E     D  Q +  A   L ++              G   
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHL 62

Query: 189 IFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTA 248
           +  + L +    +R +A   +G  + +    ++ VL   AL  LL  L+  A  ++   A
Sbjct: 63  LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 122

Query: 249 TWTLSNFCRG-MPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAV 307
            + +S   R      +         VL + +    +++   + + L  L  G  +    +
Sbjct: 123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 182

Query: 308 IEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCG-ALPYLLVLLIHSH 366
              G+  +LV L+    S      L  +  +V       +        L  LL       
Sbjct: 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 367 KKS 369
           ++ 
Sbjct: 243 QQH 245

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 4e-12
 Identities = 35/295 (11%), Positives = 87/295 (29%), Gaps = 25/295 (8%)

Query: 147 FVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAV 206
            +   + +    ++    W L+  A               +   +K +   N  ++E A 
Sbjct: 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 499

Query: 207 WALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ 266
            A   +  ++       L+   ++  L       +   L      +      +   + + 
Sbjct: 500 SAFATLEEEACTELVPYLAY--ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP 557

Query: 267 --VRPALPVLAQL--VHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGH 322
             ++  +P L Q   +  ++ + L      L  ++           E  V  R V L+  
Sbjct: 558 EYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP-VYQRCVNLVQK 616

Query: 323 R-----------------SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHS 365
                                 +  AL  +  +  G     + ++    +  L+   +  
Sbjct: 617 TLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 676

Query: 366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAI 420
               ++  +   +  +T    + ++  I    +  L   L    I++ N A WAI
Sbjct: 677 KMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAI 730

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 25/144 (17%), Positives = 60/144 (41%), Gaps = 3/144 (2%)

Query: 197 PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFC 256
           P+ D    A+  L  +A       + +++   ++ L+ Q  +     + +++   L +  
Sbjct: 634 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT 693

Query: 257 RGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRL 316
           +   + +   +   +P+L   ++     V  +A WA+  +S     ++Q  I   V  +L
Sbjct: 694 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPM-VLHQL 752

Query: 317 VELLGH--RSSSVLSPALQTIGHI 338
           VE++       ++L     TIG +
Sbjct: 753 VEIINRPNTPKTLLENTAITIGRL 776

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 19/312 (6%)

Query: 110 SDDNNLQLEATTKFRKLLS---IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWA 166
           S+D   +  +    +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 167 LTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE 226
           +T IASK             +P    LL S + +  E A  AL  +  DS    D  + +
Sbjct: 112 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 227 ---EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDK 283
                +IP   Q  +H+   +   A   ++ F     + +   +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 284 EVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD 343
           EV  + C AL  L   + D++   +   +   +++    +  +V   AL+     +   +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 344 FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLIN 403
                 +    LP L+ +L++  K S  +                 +  I          
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTV 343

Query: 404 LLQNAEINIKNW 415
             Q+ E  I+  
Sbjct: 344 AQQHDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 22/241 (9%)

Query: 41  QLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEI 100
           + NM  +        L          +  FL      P  +               +  +
Sbjct: 570 KWNMLKDEDKDLFPLLECLSSVATALQSGFL------PYCEPVYQRCVNLVQKTLAQAML 623

Query: 101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 160
             A      + D +  + A      L         + V +S ++    +  M++  P+++
Sbjct: 624 NNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ-CMQDKMPEVR 682

Query: 161 YEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA-----GD 215
             +   L ++     +  K  I    +PI    L      +   A WA+G ++       
Sbjct: 683 QSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM 741

Query: 216 SPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLA 275
            P    ++     L+ ++     +   ++L     T+       P    ++V P L    
Sbjct: 742 QPYIPMVL---HQLVEIIN--RPNTPKTLLENTAITIGRLGYVCP----QEVAPMLQQFI 792

Query: 276 Q 276
           +
Sbjct: 793 R 793

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 1e-10
 Identities = 50/378 (13%), Positives = 119/378 (31%), Gaps = 42/378 (11%)

Query: 157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDS 216
              ++ A   L     K S       +   V + +KLL   N +++  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 217 PRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQ--VRPALPVL 274
            + ++  +    ++  L       K  +   ++  L      +P               +
Sbjct: 74  SKVKEYQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 275 AQLVHS-----NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLS 329
              + S      D  V  +A   +  + + +   +     + +   L+  L     +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 330 PALQTIGHIV--AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNRE 387
             +  +GH+V   G+            + +LL  L  +   S        I+ I+     
Sbjct: 191 RTIIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244

Query: 388 QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDL 447
           +I   ++  +I  ++      +  ++ +   A  +       E   ++            
Sbjct: 245 RIGEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV------------ 291

Query: 448 LPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHEN 507
                 TI+ +CLK L         +++ D    D +      ++ +G +   +     +
Sbjct: 292 -----STIINICLKYLTYDPNYNYDDEDEDENAMDADGG---DDDDQGSDDEYSDDDDMS 343

Query: 508 NEIHEKSVKILETYWCGR 525
            ++   + K L+     R
Sbjct: 344 WKVRRAAAKCLDAVVSTR 361

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 39/343 (11%), Positives = 98/343 (28%), Gaps = 48/343 (13%)

Query: 33   STPMLHKVQLNMWDEACWAWKEGLNTTIEQVNLKKESFLRKRREAPPS----QQFLSFAP 88
            S   + ++ ++        +   L+     +  +    +R       +      F     
Sbjct: 701  SDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALV 760

Query: 89   APNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFV 148
                N    +++   +   V+S    L  + +           +    +   + V     
Sbjct: 761  VTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQ 820

Query: 149  EFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWA 208
            +         ++  A  +L  +        ++ +      + ++  +SP+++++  A +A
Sbjct: 821  DVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEEVKSAASYA 876

Query: 209  LGNVA---------------GDSPRCRDLVLSE-----------------EALIPLLAQL 236
            LG+++                  P+ + L+L                   E +  LL + 
Sbjct: 877  LGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKH 936

Query: 237  NEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFL 296
             E A+          L       P  +       LP L   + S      +    A+ F 
Sbjct: 937  CECAEEGTRNVVAECLGKLTLIDPETL-------LPRLKGYLISGSSYARSSVVTAVKFT 989

Query: 297  SNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV 339
             +     I  +++       ++ L     +V   AL T     
Sbjct: 990  ISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 11/190 (5%)

Query: 47  EACWAWKEGLNTTIEQVNLKKESFLRKRREAPPSQQFLSFAPAPNLNLQTRLEIFAAMVA 106
           +    W    +  ++      E+  + R     S+ +     A    +    +       
Sbjct: 277 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK--GALQYLVPILTQTLTKQDE 334

Query: 107 GVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWA 166
               DD N    A      L +      +  V+       F++  ++    + +  A  A
Sbjct: 335 NDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP------FIKEHIKNPDWRYRDAAVMA 388

Query: 167 LTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSE 226
              I           +   A+P  ++L+  P+  +R+ A W +G +    P   +  +++
Sbjct: 389 FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAIND 445

Query: 227 EALIPLLAQL 236
             L PLL  L
Sbjct: 446 VYLAPLLQCL 455

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 8/191 (4%)

Query: 93  NLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLM 152
             +  L+           + +     +    +       S    +     +VP   + L 
Sbjct: 271 IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 330

Query: 153 REDYPQL--QYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALG 210
           ++D       +    A        +   +  I    +P   + + +P+   R+ AV A G
Sbjct: 331 KQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFG 390

Query: 211 NVAGDSPRCRDLVLSE--EALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVR 268
            +           L       +P L +L +   + +  TA WT+   C  +P      V 
Sbjct: 391 CIL---EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 447

Query: 269 PALPVLAQLVH 279
              P+L  L+ 
Sbjct: 448 -LAPLLQCLIE 457

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 23/281 (8%), Positives = 64/281 (22%), Gaps = 47/281 (16%)

Query: 126 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHG 185
           L +  +    +E+ +          L+ +     +  +A  L     +            
Sbjct: 12  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRGGQD----------- 50

Query: 186 AVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSML 245
           AV + ++  +  N   R+   + LG +        +          L           + 
Sbjct: 51  AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN------VFNILNNMALNDKSACVR 104

Query: 246 RTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK----- 300
            TA  + +  C+  P          +             V     +A+  +++       
Sbjct: 105 ATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLL 160

Query: 301 ------NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGA 354
                  +       A                 +         +            +   
Sbjct: 161 INLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRV 220

Query: 355 LPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDA 395
           L  L   L  +    + +       ++  G++  +  +   
Sbjct: 221 LSVLCDELKKNT---VYDDIIEAAGEL--GDKTLLPVLDTM 256

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 23/194 (11%), Positives = 62/194 (31%), Gaps = 12/194 (6%)

Query: 145 PRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQ 204
              +  L  +   +++      +  +A +   +     D     + +  L      IRE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 205 AVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIF 264
           A   L  +     +      +   +IP +  ++         T  + ++       + I 
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 265 EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRS 324
            +    LP + ++       V  +   +L  +    ++     +++ V P L +L   + 
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 325 SSVLSPALQTIGHI 338
             V   A + +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 12/101 (11%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 136 EEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA 195
           +E   + ++P+ +      +Y        + +  ++    +D   +     +P  +++  
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRM-TTLFCINVLSEVCGQD---ITTKHMLPTVLRMAG 529

Query: 196 SPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQL 236
            P  ++R     +L  +        D    +  + P+L +L
Sbjct: 530 DPVANVRFNVAKSLQKIG----PILDNSTLQSEVKPILEKL 566

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 22/161 (13%)

Query: 184 HGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLA--QLNEHAK 241
           +  V     L+   ++ +R    + L        +   L+  E+  + +    +L     
Sbjct: 65  YSPVEALTPLIRDSDEVVRRAVAYRLP-----REQLSALMFDEDREVRITVADRLPLEQL 119

Query: 242 LSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACW-----ALYFL 296
             M     + +  +            R     L + +   D++V           +L  +
Sbjct: 120 EQMAADRDYLVRAYVVQ---------RIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLM 170

Query: 297 SNGKNDKI-QAVIEAGVCPRLVELLGHRSSSVLSPALQTIG 336
           +     ++ + V        L+ELL     +V   A++   
Sbjct: 171 TQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 16/120 (13%), Positives = 28/120 (23%), Gaps = 32/120 (26%)

Query: 194 LASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLS 253
           +A  N  +R     AL              + +EA  PLL  L+          A    +
Sbjct: 1   MADENKWVRRDVSTALSR------------MGDEAFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 254 NFCRGMPRPIFEQVRP--------------------ALPVLAQLVHSNDKEVLTDACWAL 293
                   P+ + +                          + +L  +        A   L
Sbjct: 49  FQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYL 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	559
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.77
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.72
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.65
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.64
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.5
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.4
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.39
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.36
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.35
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.27
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.25
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.11
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.03
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.03
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.01
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.81
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.54
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.46
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.44
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.23
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.8
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.58
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.14
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.1
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.73
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.41
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.21
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.15
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	85.69
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	84.12
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	83.78
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	83.35
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	80.19

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-54  Score=453.95  Aligned_cols=464  Identities=51%  Similarity=0.770  Sum_probs=408.7

Q ss_pred             HHHHhhhHHHHHhhhcCCCCCCCccCCCCC------CCchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCc
Q 042204           60 IEQVNLKKESFLRKRREAPPSQQFLSFAPA------PNLNLQTRLEIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSP  133 (559)
Q Consensus        60 ~~~k~~r~~~l~k~R~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~  133 (559)
                      -.||+||++.++|||+.....+........      .........+.++.+++.+++++.+.++.|+..++++++.+..+
T Consensus        31 eiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~  110 (503)
T d1wa5b_          31 ELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP  110 (503)
T ss_dssp             CCSCCCCCSCCSCCCCC----------------------------CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC
T ss_pred             HHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCc
Confidence            479999999999999864322211100000      00111122346899999999999999999999999999887788


Q ss_pred             hHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 042204          134 PIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVA  213 (559)
Q Consensus       134 ~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  213 (559)
                      +++.+++.|++|.|+++|+.+.++.++..|+|+|+|++.+++..+..+.+.|+++.++.+|.+++.++++.|+|+|+||+
T Consensus       111 ~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia  190 (503)
T d1wa5b_         111 PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA  190 (503)
T ss_dssp             SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence            99999999999999999997665899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHH
Q 042204          214 GDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWA  292 (559)
Q Consensus       214 ~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~  292 (559)
                      .+++.+|+.+.+.|++++++.++ .+.+..+++.++|++++++... +........+++|.+..++.+.|++++..++|+
T Consensus       191 ~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~  269 (503)
T d1wa5b_         191 GDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWA  269 (503)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            99999999999999999999998 5667789999999999999876 556667778999999999999999999999999


Q ss_pred             HHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHH
Q 042204          293 LYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKN  372 (559)
Q Consensus       293 L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~  372 (559)
                      +.+++...++....+++.|+++.++.++.+++..++.+|+++++|++.+.+..+..+++.|+++.|..++.++ ++.+++
T Consensus       270 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~  348 (503)
T d1wa5b_         270 ISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKK  348 (503)
T ss_dssp             HHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHH
T ss_pred             HHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHH
Confidence            9999998888888999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhcCCC
Q 042204          373 HACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGG--SHEQIKYLVREKCIKPLCDLLPC  450 (559)
Q Consensus       373 ~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~  450 (559)
                      +++|+++|++++++..+..+++.|+++.++.++.+++++++.+|+|+|.|++..+  .++...++++.|++++|+++|+.
T Consensus       349 ~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~  428 (503)
T d1wa5b_         349 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI  428 (503)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred             HHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999754  35678899999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCCC
Q 042204          451 ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYWCGRVV  527 (559)
Q Consensus       451 ~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f~~~~~  527 (559)
                      .|++++..++++|.+++..++.......  ...+++...++++||+++|+.||+|+|.+||++|.+||++||++||+
T Consensus       429 ~d~~~~~~~L~~l~~ll~~~~~~~~~~~--~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         429 ADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            9999999999999999988765432211  24578999999999999999999999999999999999999987764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-47  Score=395.64  Aligned_cols=417  Identities=46%  Similarity=0.782  Sum_probs=386.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +.++.+++.++|++++.+..|+..++++++...+++++.+++.|++|.|+++|++.+++++|..|+|+|++++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            46889999999999999999999999999877677899999999999999999876558999999999999999889999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhh----hHhHHHHHHHHHHH
Q 042204          179 KVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHA----KLSMLRTATWTLSN  254 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~----~~~~~~~a~~~L~n  254 (559)
                      ..+++.|+++.|+.+|.+++.++++.|+|+|+|++.+++..|..+.+.|++..++.++....    .....+.++|++++
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999985432    23567789999999


Q ss_pred             hhcCC-CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 042204          255 FCRGM-PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQ  333 (559)
Q Consensus       255 L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  333 (559)
                      ++... +........+++|.+..++.+++++++..++|++++++..+++....+...|+++.+++++.+++..++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99887 44455567889999999999999999999999999999888888888889999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       334 ~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      +|++++.+++.....+++.|+++.|..++.++ ++.++..|+|+++|++..+.+....+.+.|+++.+++++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999999998888999999999999999998 99999999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHh
Q 042204          414 NWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEA  493 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~  493 (559)
                      ..|+|+|.|++..++++....+.+.|+++.|+++++..|++++..++++|.++++.++...       ..+.+...+++.
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-------~~~~~~~~~~~~  404 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEEC  404 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHc
Confidence            9999999999998889999999999999999999999999999999999999998877542       457789999999


Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          494 EGLEKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       494 g~l~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      ||++.|+.|++|+|++|++.|.++|++||+
T Consensus       405 ~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         405 GGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-33  Score=290.19  Aligned_cols=366  Identities=24%  Similarity=0.326  Sum_probs=322.7

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.+|.++..+++ .+..++..|++.|.++.+.. ......+.+.|++|.++.+|.+++ ++++..|+|+|+||+..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            578999999985 56789999999999987653 556778889999999999999988 899999999999999988999


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..+.+.|+++.|+.++.+.+..++..++|+|.|++.............++++.++.++ .+.+.+++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999976655455555667899999988 66788999999999999998


Q ss_pred             CCCCC-cHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 042204          258 GMPRP-IFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIG  336 (559)
Q Consensus       258 ~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  336 (559)
                      ..+.. ......++++.++.++.++++.+...++.++++++...+.....+++.|+++.+..++.++++.++..++|+|+
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            75332 22334789999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc---CCHHHHHHHHHcCCHHHHHHHhhcCChhHH
Q 042204          337 HIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA---GNREQIQAVIDAGLIGPLINLLQNAEINIK  413 (559)
Q Consensus       337 nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~li~~~~i~~Li~lL~~~~~~v~  413 (559)
                      |++.+++.....+++.|+++.++.++.+. +..++++|+|+|+|++.   ..++.+..+++.|+++.|+++|...+.++.
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~  434 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  434 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            99999998888999999999999999999 99999999999999986   245778889999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCC----------HHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 042204          414 NWAAWAISNATSGGS----------HEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILK  468 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~----------~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~  468 (559)
                      ..++.+|.++...+.          ......+.+.|+++.|..+..+++.++...|...|.+++.
T Consensus       435 ~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~  499 (503)
T d1wa5b_         435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG  499 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            999999999875321          1334456778999999999899999999999999988773

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-32  Score=278.21  Aligned_cols=365  Identities=25%  Similarity=0.390  Sum_probs=317.7

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWS-DDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.+|.|++.|++ +++++|..|+++|.++.+.. +.....+++.|++|.|+++|++++ ++++..|+++|+|++..+++.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHH
Confidence            679999999975 45789999999999986653 567888999999999999999988 899999999999999988899


Q ss_pred             HHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHH
Q 042204          178 TKVVIDHGAVPIFVKLLASPN-----DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTL  252 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L  252 (559)
                      +..+.+.|+++.|+.++...+     ......++|++.+++.............++++.+..++ .+.+.+++..++|++
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l  212 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  212 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhh
Confidence            999999999999999998743     34567789999999977655544445556778888887 667789999999999


Q ss_pred             HHhhcCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhH
Q 042204          253 SNFCRGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPA  331 (559)
Q Consensus       253 ~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a  331 (559)
                      .+++...+... .....+++|.++.++.+++++++..++++|.+++..+++....+++.|+++.++.++.++++.++..|
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a  292 (434)
T d1q1sc_         213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  292 (434)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence            99998753222 22346899999999999999999999999999998888888889999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCCh
Q 042204          332 LQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEI  410 (559)
Q Consensus       332 l~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~  410 (559)
                      +++|++++.........+.+.|+++.++.++.++ ++.++..|+|+++|++. ++++.+..+.+.|+++.|++++...++
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~  371 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  371 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH
T ss_pred             HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence            9999999998888888899999999999999999 99999999999999987 578888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcC----CC-HHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204          411 NIKNWAAWAISNATSG----GS-HEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       411 ~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il  467 (559)
                      +++..++++|.++...    +. +.....+.+.|+++.|..+..+++++++..+...|.+++
T Consensus       372 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         372 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999999999999742    22 334556678899999999999999999999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-31  Score=278.23  Aligned_cols=402  Identities=15%  Similarity=0.150  Sum_probs=337.9

Q ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVW-SDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +.++.+++.|. +++.+.+..|+..|..+.. . .+....+++.|++|.|+.+|++++ ++++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~-~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            57899999996 4678999999999999743 2 677889999999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..+.+.|+++.|+.+|++++++++..++++|.+++..++..+..+...|++++++.++.......++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999988888888999999999999999776777889999999999997


Q ss_pred             CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          258 GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       258 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      ...........++++.|..++.+++.+++..+++++.+++......   ....|+++.|++++.+++..++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            6544444555789999999999999999999999999998554422   2234789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcC-CCchhHHHHHHHHHHHhhcCC--HH-HHHHHHHcCCHHHHHHHhhcCC-hhH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIH-SHKKSIKNHACWTISKITAGN--RE-QIQAVIDAGLIGPLINLLQNAE-INI  412 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~--~~-~~~~li~~~~i~~Li~lL~~~~-~~v  412 (559)
                      ++.+++.....+.+.++++.++.++.. ...+.++..|+++|.|++...  .+ ....+...+.++.|++++..++ ..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            999888888888899999999998843 226788999999999998642  22 3344557888999999987653 567


Q ss_pred             HHHHHHHHHHHhcCCC-------------------------------------------------------------HHH
Q 042204          413 KNWAAWAISNATSGGS-------------------------------------------------------------HEQ  431 (559)
Q Consensus       413 ~~~a~~aL~nl~~~~~-------------------------------------------------------------~~~  431 (559)
                      +..+++++.|++....                                                             +..
T Consensus       373 ~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~  452 (529)
T d1jdha_         373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN  452 (529)
T ss_dssp             HHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHH
Confidence            7788888888765321                                                             111


Q ss_pred             HHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHH
Q 042204          432 IKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIH  511 (559)
Q Consensus       432 ~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~  511 (559)
                      ...+.+.|+++.|+++|.+.++.++..++.+|.++...              ...++.+.+.|+++.|.+|.+++|++++
T Consensus       453 r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--------------~~~~~~i~~~g~~~~L~~Ll~s~n~~v~  518 (529)
T d1jdha_         453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVA  518 (529)
T ss_dssp             HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--------------HHHHHHHHHTTCHHHHHHGGGCSSHHHH
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC--------------hhhHHHHHHCCCHHHHHHHhCCCCHHHH
Confidence            22344678889999999999999999999999886532              1246789999999999999999999999


Q ss_pred             HHHHHHHHh
Q 042204          512 EKSVKILET  520 (559)
Q Consensus       512 ~~a~~il~~  520 (559)
                      +.|..+|.+
T Consensus       519 ~~a~~aL~~  527 (529)
T d1jdha_         519 TYAAAVLFR  527 (529)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=267.55  Aligned_cols=416  Identities=16%  Similarity=0.137  Sum_probs=338.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHh-cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQ-SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSED  177 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~  177 (559)
                      +++|.|++.|+++|..++..|+..+.++...  ...+..++. .|+++.++.+|++.++++++..|+++|.+++. +++.
T Consensus        17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~   93 (529)
T d1jdha_          17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK--EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREG   93 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            5799999999999999999999999998654  455555554 47899999999876558999999999999997 7889


Q ss_pred             HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhc
Q 042204          178 TKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCR  257 (559)
Q Consensus       178 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~  257 (559)
                      +..+++.|++|.|+.+|++++++++..|+++|+|++.+.+..|..+.+.|++++|+.++ ++.+.+++..+++++.+++.
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998888889999999999999999 67788999999999999998


Q ss_pred             CCC-CCcHhhHhchHHHHHHhhcc-CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 042204          258 GMP-RPIFEQVRPALPVLAQLVHS-NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTI  335 (559)
Q Consensus       258 ~~~-~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  335 (559)
                      ..+ ........++++.++.++.+ ++..++..+++++.+++.. ++....+++.|+++.|+.++.+++..++..+++++
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHH
Confidence            753 23333457889999999965 4578899999999999864 44557889999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh--cCChhHH
Q 042204          336 GHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ--NAEINIK  413 (559)
Q Consensus       336 ~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~--~~~~~v~  413 (559)
                      .+++......   ....|+++.|+.++.++ ++.++..|+++|.|++.++++....+.+.++++.|+..+.  .+.++++
T Consensus       252 ~~ls~~~~~~---~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~  327 (529)
T d1jdha_         252 RNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT  327 (529)
T ss_dssp             HHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred             Hhccccccch---hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHH
Confidence            9998654421   22347899999999998 9999999999999999888998888999999999999885  3567899


Q ss_pred             HHHHHHHHHHhcCCCH--HHHHHHHHcCChHHHHhcCCCCC-hHHHHHHHHHHHHHHHhhhhhccccc------------
Q 042204          414 NWAAWAISNATSGGSH--EQIKYLVREKCIKPLCDLLPCAN-PTIVTVCLKGLENILKVGEAEKNMDT------------  478 (559)
Q Consensus       414 ~~a~~aL~nl~~~~~~--~~~~~l~~~~~l~~L~~lL~~~d-~~v~~~~l~~l~~il~~~~~~~~~~~------------  478 (559)
                      ..|+++|.+++.....  .....+...+.++.|+.++..++ ..++..+++++.++....+.......            
T Consensus       328 ~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~  407 (529)
T d1jdha_         328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV  407 (529)
T ss_dssp             HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHh
Confidence            9999999999976432  23445567899999999998755 45667777777665322111000000            


Q ss_pred             -------------------------------------ccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          479 -------------------------------------AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       479 -------------------------------------~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                                                           ........+..+.+.|+++.|..+..+++++++..|...+..+
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L  487 (529)
T d1jdha_         408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL  487 (529)
T ss_dssp             HHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                                                 0000112234566789999999999999999999999999887


Q ss_pred             cC
Q 042204          522 WC  523 (559)
Q Consensus       522 f~  523 (559)
                      ..
T Consensus       488 ~~  489 (529)
T d1jdha_         488 AQ  489 (529)
T ss_dssp             TT
T ss_pred             hc
Confidence            54

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.8e-26  Score=234.23  Aligned_cols=368  Identities=18%  Similarity=0.194  Sum_probs=280.4

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhh
Q 042204          142 GVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRD  221 (559)
Q Consensus       142 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  221 (559)
                      ..||.|+++|++++ |++|..|+++|+|++.++++.+..+.+.|+||.|+++|++++++++..|+++|+|++.+++..|.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999988888899


Q ss_pred             hhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhh----------------ccCCHhH
Q 042204          222 LVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLV----------------HSNDKEV  285 (559)
Q Consensus       222 ~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL----------------~~~d~~v  285 (559)
                      .+.+.|+++.++.++....+..++..+++++.+++...... .......++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999977788899999999999999875333 333334444443332                3457889


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC------CCcchhhHHHHHHHhhcC------------------
Q 042204          286 LTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR------SSSVLSPALQTIGHIVAG------------------  341 (559)
Q Consensus       286 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~------~~~v~~~al~~L~nl~~~------------------  341 (559)
                      +..+++++.+++...+.....+...|+++.++.++.+.      .......+...+.+....                  
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999977665555555668889998887542      111111111111111000                  


Q ss_pred             --------------------------------ChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCH---
Q 042204          342 --------------------------------DDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNR---  386 (559)
Q Consensus       342 --------------------------------~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---  386 (559)
                                                      .......+...++++.++.++....++.++..+.+++.+++....   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                            000011112335567788887665478889999999999986422   


Q ss_pred             -H-HHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC------CChHHHHH
Q 042204          387 -E-QIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC------ANPTIVTV  458 (559)
Q Consensus       387 -~-~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~  458 (559)
                       . ....+.+.++++.|++++.+++++++..+++++.+++..  ++.... +..++++.|+.+|..      .+.+++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHH-HHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence             1 223344678999999999999999999999999999985  344444 345689999998853      23578899


Q ss_pred             HHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHhhcCCCCC
Q 042204          459 CLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQS-HENNEIHEKSVKILETYWCGRVV  527 (559)
Q Consensus       459 ~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~-~~~~~v~~~a~~il~~~f~~~~~  527 (559)
                      ++.+|.++....             ...+..+.+.|+++.|.++.. ++++.+++.|..+|.+.|...+-
T Consensus       397 a~~~L~~l~~~~-------------~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         397 ACYTVRNLMASQ-------------PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHHHHTTC-------------THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHHHHhcCC-------------HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            999999988432             225777889999999999975 56889999999999999876654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.7e-24  Score=217.50  Aligned_cols=361  Identities=15%  Similarity=0.159  Sum_probs=268.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+|.+++.|++++++.+..|+..|.++... +++.+..+.+.|++|.|+++|++++ +++|..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            479999999999999999999999997544 4788999999999999999999988 99999999999999988999999


Q ss_pred             HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhc---------------hhhhHh
Q 042204          180 VVIDHGAVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLN---------------EHAKLS  243 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~---------------~~~~~~  243 (559)
                      .+.+.|+++.|+.++.+ .+++++..|+++|.+++..... +...... ++++++..+.               ...+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998865 7889999999999999976544 3333333 3455554442               233567


Q ss_pred             HHHHHHHHHHHhhcCCCCCcHh-hHhchHHHHHHhhccC------CHhHHHHHHHHHHHhcc------------------
Q 042204          244 MLRTATWTLSNFCRGMPRPIFE-QVRPALPVLAQLVHSN------DKEVLTDACWALYFLSN------------------  298 (559)
Q Consensus       244 ~~~~a~~~L~nL~~~~~~~~~~-~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~------------------  298 (559)
                      ++..+++++.+++......... ...++++.++.++++.      .......+...+.+...                  
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            8899999999998765322222 2256778887777521      11111111111111100                  


Q ss_pred             --------------------------------CChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChH-
Q 042204          299 --------------------------------GKNDKIQAVIEAGVCPRLVELLGHR-SSSVLSPALQTIGHIVAGDDF-  344 (559)
Q Consensus       299 --------------------------------~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~-  344 (559)
                                                      ........+...++++.++.++... ++.++..+.+++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                            0001111223334567777776543 556778889999998865432 


Q ss_pred             ----HHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC------ChhHHH
Q 042204          345 ----QTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA------EINIKN  414 (559)
Q Consensus       345 ----~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~------~~~v~~  414 (559)
                          ....+.+.|+++.|+.++.++ ++.++..++++++|++.. ++.... +..++++.|+.+|...      +.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHH-HHHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                233455779999999999999 999999999999999864 333333 4446899999998643      357999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHH
Q 042204          415 WAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILK  468 (559)
Q Consensus       415 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~  468 (559)
                      .|+.+|.+++.. +++....+.+.|+++.|+.++.+. ++.++..|..+|.++..
T Consensus       396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            999999999976 567888889999999999998764 67899999999999763

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-19  Score=171.76  Aligned_cols=195  Identities=16%  Similarity=0.149  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHH
Q 042204          157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQ  235 (559)
Q Consensus       157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~l  235 (559)
                      .+.+..|+.+|.+++. +.+++..+...|+++.++. ++.+++++++..|+++|++++.+++..+..+.+.|++++|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6889999999999997 7888899999999999986 7888999999999999999999999999999999999999999


Q ss_pred             hchhhhHhHHHHHHHHHHHhhcCCCCCc-HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHH
Q 042204          236 LNEHAKLSMLRTATWTLSNFCRGMPRPI-FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCP  314 (559)
Q Consensus       236 l~~~~~~~~~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~  314 (559)
                      +..+.++.++..++|+|++++++.+... .....++++.|+.++.+.++.++..++++|++++..+++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9767788899999999999998874333 334588999999999999999999999999999988888888999999999


Q ss_pred             HHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhC
Q 042204          315 RLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINC  352 (559)
Q Consensus       315 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~  352 (559)
                      .|+.+|.++++.++..|+++|++++..++.........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            99999999999999999999999999888776655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-17  Score=158.61  Aligned_cols=230  Identities=19%  Similarity=0.143  Sum_probs=187.8

Q ss_pred             ccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHH-hhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHH
Q 042204          279 HSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVE-LLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPY  357 (559)
Q Consensus       279 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~  357 (559)
                      ...|.+.+..|+.+|.++++. .+....+...|.++.++. ++.++++.++..|+++|++++.+++.....+.+.|+++.
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          27 QAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            345678899999999999954 445678889999998875 788889999999999999999988888788889999999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042204          358 LLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVR  437 (559)
Q Consensus       358 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  437 (559)
                      |+.++.+..++.++..|+|+|++++.+++.....+.+.|+++.|++++.+++.+++..++++|.+++.. .++....+.+
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~  184 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCS  184 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHH
Confidence            999997654889999999999999999999899999999999999999999999999999999999876 5677788889


Q ss_pred             cCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHH--hccHHHHH---HHh--cCCCHHH
Q 042204          438 EKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEE--AEGLEKIE---NLQ--SHENNEI  510 (559)
Q Consensus       438 ~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~--~g~l~~l~---~L~--~~~~~~v  510 (559)
                      .|+++.|+.++++++++++..++++|.++....+..             ...+..  .+....+.   .+.  ...-.+.
T Consensus       185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~-------------~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~  251 (264)
T d1xqra1         185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG-------------VRECREPELGLEELLRHRCQLLQQHEEYQEE  251 (264)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH-------------HHHHHCGGGCHHHHHHHHHHHHTTCGGGHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHH-------------HHHHHHhhhhHHHHHHHHHHhccchHHHHHH
Confidence            999999999999999999999999999988543321             111111  12222222   221  2233556


Q ss_pred             HHHHHHHHHhhcC
Q 042204          511 HEKSVKILETYWC  523 (559)
Q Consensus       511 ~~~a~~il~~~f~  523 (559)
                      .+.+..+++++|.
T Consensus       252 ~~~~~~ll~~~~~  264 (264)
T d1xqra1         252 LEFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcC
Confidence            6788889998884

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.3e-16  Score=162.96  Aligned_cols=379  Identities=12%  Similarity=0.141  Sum_probs=262.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204          101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV  180 (559)
Q Consensus       101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  180 (559)
                      ++.+.+.++++++.++..|+..+..+...-  +.  ......++|.+..++++++ +.+|..++++|++++....   ..
T Consensus       205 ~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~--~~--~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~---~~  276 (588)
T d1b3ua_         205 IPMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVG---PE  276 (588)
T ss_dssp             HHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHC---HH
T ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHhhccC--CH--HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHHhh---hh
Confidence            344445555556666666666665554331  11  1112236778888887777 7888888888888875211   12


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc-hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          181 VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       181 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      .....+++.+..++.+++++++..++.+++.++..-. ..+....-...++.+...+ .+.+..++..++.++..++..-
T Consensus       277 ~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~  355 (588)
T d1b3ua_         277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL  355 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred             hhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc
Confidence            3334678899999999999999999999999875432 1222222223455555555 5667788888887777765431


Q ss_pred             CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204          260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV  339 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  339 (559)
                        ........++|.+..++.+++++++..++.++..+...-..  .. ....+++.+..++.+.++.+|..++.+++.++
T Consensus       356 --~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~-~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~  430 (588)
T d1b3ua_         356 --GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             --CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             --chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hh-hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence              12233466789999999999999999998888777643221  11 12346888999999999999999999999887


Q ss_pred             cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHH
Q 042204          340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAW  418 (559)
Q Consensus       340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~  418 (559)
                      ..-..   ..+...+.+.+..++.++ ...+|..|+++++.++.. .++.    ....+++.+..++.++++..|..++.
T Consensus       431 ~~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~  502 (588)
T d1b3ua_         431 GQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLF  502 (588)
T ss_dssp             HHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHH
T ss_pred             HHcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            52110   112223466778888888 899999999999999752 2322    22348889999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHH
Q 042204          419 AISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEK  498 (559)
Q Consensus       419 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~  498 (559)
                      ++..+......+    .....+++.|..+++++.+.|+..++++|..+...-..           ..+.     ....+.
T Consensus       503 ~l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~-----------~~~~-----~~i~~~  562 (588)
T d1b3ua_         503 CINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN-----------STLQ-----SEVKPI  562 (588)
T ss_dssp             HHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH-----------HHHH-----HHHHHH
T ss_pred             HHHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc-----------HhHH-----HHHHHH
Confidence            999887642222    23445899999999999999999999999998644221           1122     223588


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhh
Q 042204          499 IENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       499 l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      ++.|+++++.+|+..|...++..
T Consensus       563 l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         563 LEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999998754

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.4e-14  Score=151.13  Aligned_cols=381  Identities=12%  Similarity=0.091  Sum_probs=279.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.+.+.+++.++.++..++..+..++..-..    ......++|.+..++++++ +.+|..|+.++..++...+..  
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~--  237 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH--
Confidence            466777788889999999999999998765321    2234567888999998888 899999999999998633321  


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                       .....++|.+..++.+++..+|..++.+|++++.....   .......++.+..++ .+.+.+++..++.++..++...
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHH
Confidence             12234688999999999999999999999998743211   122234566777777 6778899999999999998865


Q ss_pred             CCCc--HhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 042204          260 PRPI--FEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGH  337 (559)
Q Consensus       260 ~~~~--~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  337 (559)
                      ....  ......++|.+...+.+.++.++..++.++..++..-..  .. ....+++.+...+.++++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~~-~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--hH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            3322  234477889999999999999999999888877632111  11 123468899999999999999988888877


Q ss_pred             hhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHH
Q 042204          338 IVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWA  416 (559)
Q Consensus       338 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a  416 (559)
                      +...-..  ..+ ...+++.+..++.+. ++.+|..++.++..++.. ..+.    +...+.+.+..++.++...+|..|
T Consensus       390 ~~~~~~~--~~~-~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A  461 (588)
T d1b3ua_         390 VNEVIGI--RQL-SQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCH--HHH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHhhcch--hhh-hhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHH
Confidence            7642211  111 124578888899888 999999999999888641 1111    112246667778888899999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccH
Q 042204          417 AWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGL  496 (559)
Q Consensus       417 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l  496 (559)
                      ++++..++....++.    ....+++.+..++.+++...+..++.++..+......                .......+
T Consensus       462 ~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~----------------~~~~~~il  521 (588)
T d1b3ua_         462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ----------------DITTKHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----------------HHHHHHTH
T ss_pred             HHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCh----------------HHHHHHHH
Confidence            999999987533332    2334788999999999999999999999888754321                11123467


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcC
Q 042204          497 EKIENLQSHENNEIHEKSVKILETYWC  523 (559)
Q Consensus       497 ~~l~~L~~~~~~~v~~~a~~il~~~f~  523 (559)
                      +.+.++..++.+.||..+.+.+...+.
T Consensus       522 p~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         522 PTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            888899999999999999888877654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-11  Score=140.39  Aligned_cols=409  Identities=12%  Similarity=0.091  Sum_probs=264.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .+..+++.+++.|++.|+.|+..|.+.+....... +.-....+++.|+++|++++ +++|..|+.+|+.++..-++...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~-~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL-DDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSC-CTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhccccc-ChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH
Confidence            46788899999999999999999999876542111 11112247899999999888 99999999999999885443221


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh-hhh----hhccCCHHHHHHHhchhhhHhHHHHHHHHHHH
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC-RDL----VLSEEALIPLLAQLNEHAKLSMLRTATWTLSN  254 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-r~~----i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~n  254 (559)
                          ..+++.|+..+.+++...+..+..+|..+...-+.. ...    ......++.+...+....+..++..++.++..
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence                246788888888888889998888888775322210 000    00011233344444445567788889999998


Q ss_pred             hhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHH
Q 042204          255 FCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL-GHRSSSVLSPALQ  333 (559)
Q Consensus       255 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~  333 (559)
                      +....+.........+++.+...+.++++.++..|+.+|+.++...++..    -..+++.++..+ .+.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            87765444444456788888889999999999999999999986544221    123456666555 3456778888999


Q ss_pred             HHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCH----HHHHHHHHc--------------
Q 042204          334 TIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNR----EQIQAVIDA--------------  395 (559)
Q Consensus       334 ~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~~li~~--------------  395 (559)
                      +++.++..........+ ..+++.+...+... ++.+|..++.++..++...+    .....++..              
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            99999875543322111 36788899999888 89999999999888875322    122222110              


Q ss_pred             ------------------CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHH
Q 042204          396 ------------------GLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT  457 (559)
Q Consensus       396 ------------------~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~  457 (559)
                                        ...+.......+..+.+|..++.+|..+..... +.... .-..+++.|...+...++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~-~~~~~~~~L~~~l~d~~~~vr~  389 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPE-FYKTVSPALISRFKEREENVKA  389 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHH-HHTTTHHHHHSTTSCSSSHHHH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHH-HHHHHHHHHHHHhcCCchHHHH
Confidence                              000111111223456899999999999987533 33333 2345889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccccccc---CcchHHHHHHHH--hccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          458 VCLKGLENILKVGEAEKNMDTAI---GDVNQYAQLVEE--AEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       458 ~~l~~l~~il~~~~~~~~~~~~~---~~~~~~~~~i~~--~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      .++.++..++.............   ...+.....+.+  ...++.+.+...+.+..++..+..++..+.
T Consensus       390 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            99999988876532211000000   000001111111  234567777788899999998888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.2e-12  Score=137.67  Aligned_cols=396  Identities=13%  Similarity=0.200  Sum_probs=237.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTK  179 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~  179 (559)
                      .++.+.+.+.++++..+..|+.+|..++.+. .+.....+ ..++|.++..+++++ +.+|..|+|+|+.++........
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh
Confidence            4566677888999999999999998875432 11111111 236788899998888 99999999999998762221111


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCch-hhhhhhccCCHHHHHHHhchhhhHhHHHH---HHH-----
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPR-CRDLVLSEEALIPLLAQLNEHAKLSMLRT---ATW-----  250 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~---a~~-----  250 (559)
                      .-.-..+++.++..+.++++.+++.|+++|.+++..... ....+  ...++.++..+... +...+..   ++.     
T Consensus       473 ~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~-~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         473 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKY-QHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHh
Confidence            112346788999999999999999999999999742211 11110  01223333333211 1111111   111     


Q ss_pred             -------------------------------------HHHHhhcCCCCCcHhhHhchHHHHHHhh---------------
Q 042204          251 -------------------------------------TLSNFCRGMPRPIFEQVRPALPVLAQLV---------------  278 (559)
Q Consensus       251 -------------------------------------~L~nL~~~~~~~~~~~~~~~l~~L~~lL---------------  278 (559)
                                                           +++.++...............+.+..++               
T Consensus       550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                                                 1111111110000000011111111111               


Q ss_pred             --ccCCHhHHHHHHHHHHHhccCChhHHHHH-HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCCh
Q 042204          279 --HSNDKEVLTDACWALYFLSNGKNDKIQAV-IEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGAL  355 (559)
Q Consensus       279 --~~~d~~v~~~a~~~L~~l~~~~~~~~~~~-~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l  355 (559)
                        ...+.++...++.+++.+...-......+ ....+++.+...+.+.++.++..|..+++.++..........++ .++
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~  708 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFM  708 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence              11244556666666666653322222233 33467888889999999999999999999998765544332222 366


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCC--hhHHHHHHHHHHHHhcCCCHHHHH
Q 042204          356 PYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAE--INIKNWAAWAISNATSGGSHEQIK  433 (559)
Q Consensus       356 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~--~~v~~~a~~aL~nl~~~~~~~~~~  433 (559)
                      +.+...|.+. ...++..|+|+++.|+....+.....++. +++.|+.++++++  ..++..++.+|+.++.. .++...
T Consensus       709 ~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~~-il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-~p~~~~  785 (888)
T d1qbkb_         709 PILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIPM-VLHQLVEIINRPNTPKTLLENTAITIGRLGYV-CPQEVA  785 (888)
T ss_dssp             HHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSHH-HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-CHHHHG
T ss_pred             HHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-CHHHHH
Confidence            7777778777 88999999999999986433444443332 7888999998754  45889999999999876 455443


Q ss_pred             HHHHcCChHHHHhcCCC-CChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 042204          434 YLVREKCIKPLCDLLPC-ANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHE  512 (559)
Q Consensus       434 ~l~~~~~l~~L~~lL~~-~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~  512 (559)
                      ..+ ..+++.++..+.. .|.+-...+..++..++......-        ...+...+      +.+... .++.++++.
T Consensus       786 ~~l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~--------~~~l~~~~------~~i~~~-~~~~~~~~~  849 (888)
T d1qbkb_         786 PML-QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV--------IQDFIFFC------DAVASW-INPKDDLRD  849 (888)
T ss_dssp             GGG-GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGT--------GGGHHHHH------HHHTTC-SSCCHHHHH
T ss_pred             hhH-HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHH--------HHHHHHHH------HHHHhc-CCCCHHHHH
Confidence            222 2367777777754 566667889999999887654321        11122111      222222 235577888


Q ss_pred             HHHHHHHhh
Q 042204          513 KSVKILETY  521 (559)
Q Consensus       513 ~a~~il~~~  521 (559)
                      ...++|..|
T Consensus       850 ~~~~~l~~~  858 (888)
T d1qbkb_         850 MFCKILHGF  858 (888)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777665

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.9e-12  Score=139.25  Aligned_cols=341  Identities=15%  Similarity=0.167  Sum_probs=216.8

Q ss_pred             HHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHh
Q 042204          114 NLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKL  193 (559)
Q Consensus       114 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~l  193 (559)
                      ..+..|...|..+...-..+....     +++.+.+.+.+++ +..|+.|+.+|+.++.+..+.....+ ..+++.|+..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHh
Confidence            355666666665543322222222     4566667777887 89999999999999986544322222 2467888999


Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCCc-hhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHH
Q 042204          194 LASPNDDIREQAVWALGNVAGDSP-RCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALP  272 (559)
Q Consensus       194 L~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~  272 (559)
                      ++++++.+|..++|+|+.++.... ...+.. -...++.++..+ .+.++.++..++++|.+++.............+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            999999999999999999874211 111111 224577777777 55678899999999999997654444455677788


Q ss_pred             HHHHhhccCCHhHHHHHHHHHHHhccC------ChhHHHHHHHhCcHHHHHHhhCC------------------------
Q 042204          273 VLAQLVHSNDKEVLTDACWALYFLSNG------KNDKIQAVIEAGVCPRLVELLGH------------------------  322 (559)
Q Consensus       273 ~L~~lL~~~d~~v~~~a~~~L~~l~~~------~~~~~~~~~~~g~l~~L~~lL~~------------------------  322 (559)
                      .+...+...+...+..+..+++.++..      .+...+.     +++.+......                        
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~-----l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~  597 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM-----LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQS  597 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHH-----HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHH
Confidence            888888777666665555555555421      1111111     11111111110                        


Q ss_pred             ------------------------------------CCCcchhhHHHHHHHhhcCChHHHHH-HHhCCChHHHHHHhcCC
Q 042204          323 ------------------------------------RSSSVLSPALQTIGHIVAGDDFQTQC-IINCGALPYLLVLLIHS  365 (559)
Q Consensus       323 ------------------------------------~~~~v~~~al~~L~nl~~~~~~~~~~-~~~~g~l~~L~~lL~~~  365 (559)
                                                          .+..+...++.+++.++..-...... +....+++.+...+++.
T Consensus       598 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~  677 (888)
T d1qbkb_         598 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK  677 (888)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC
Confidence                                                11223333444444444322221122 22345677777888888


Q ss_pred             CchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 042204          366 HKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC  445 (559)
Q Consensus       366 ~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  445 (559)
                       ++.+|..|..+++.++..........++. +++.++..|.++...++..|+|+++.++.....+...++-  .+++.|+
T Consensus       678 -~~~vr~~a~~llgdl~~~~~~~~~~~l~~-~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~  753 (888)
T d1qbkb_         678 -MPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLV  753 (888)
T ss_dssp             -SHHHHHHHHHHHHHHHHHCGGGTGGGHHH-HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHH
T ss_pred             -ChHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHH
Confidence             89999999999999986544444444443 6778888888888899999999999998764433333322  3678888


Q ss_pred             hcCCCCC--hHHHHHHHHHHHHHHHhhhh
Q 042204          446 DLLPCAN--PTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       446 ~lL~~~d--~~v~~~~l~~l~~il~~~~~  472 (559)
                      .++++++  ..+..+++.+|.++......
T Consensus       754 ~il~~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         754 EIINRPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHcCCCccHHHHHHHHHHHHHHHHHCHH
Confidence            8887654  45889999999998876543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=3.3e-11  Score=113.29  Aligned_cols=256  Identities=14%  Similarity=0.096  Sum_probs=195.7

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh
Q 042204          141 SGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR  220 (559)
Q Consensus       141 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  220 (559)
                      ....+.|+++|++++ |.+|..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            446678999999988 9999999999998764  1         3579999999999999999999999998543222 1


Q ss_pred             hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCC
Q 042204          221 DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGK  300 (559)
Q Consensus       221 ~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  300 (559)
                      +.     .+..++..+..+.++.++..++.+|.+++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            11     245566666678889999999999999987542    2234567778888888999999999988887642  


Q ss_pred             hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204          301 NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK  380 (559)
Q Consensus       301 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  380 (559)
                               ...++.+..++.+.+..++..+..+++.+......         ..+.+...+.+. +..++..+.+++..
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     24567788888888888888888888887765543         234566777777 89999999999987


Q ss_pred             hhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC-CChHHHHHH
Q 042204          381 ITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC-ANPTIVTVC  459 (559)
Q Consensus       381 l~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~~  459 (559)
                      +.  .         ...++.|++.+.+  ++++..++++|+.+..            .++++.|..++.. +|.+++..+
T Consensus       215 ~~--~---------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RK--D---------KRVLSVLCDELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TT--C---------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hh--h---------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHH
Confidence            63  2         2367888888874  4688999999998742            2367788887755 578999999


Q ss_pred             HHHHH
Q 042204          460 LKGLE  464 (559)
Q Consensus       460 l~~l~  464 (559)
                      +++|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=7.6e-10  Score=103.68  Aligned_cols=252  Identities=13%  Similarity=0.108  Sum_probs=186.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204          101 FAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV  180 (559)
Q Consensus       101 l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  180 (559)
                      .+.|++.|.++++.++..|+..|..+-.            ...+|.|++++++++ +.+|..|+++|+.+..... ....
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~-~~~~   86 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CEDN   86 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-THHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cccc
Confidence            4678999999999999999999988621            135799999999998 9999999999999876322 2221


Q ss_pred             HHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          181 VIDHGAVPIFVK-LLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       181 i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      +     ++.+.. +++++++.++..++.+|++++...+....     ..++.+...+ .+.+..++..++.++..+..  
T Consensus        87 ~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          87 V-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             H-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC----
T ss_pred             h-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcch--
Confidence            1     233443 56789999999999999999765443222     1345555555 56677888888888776543  


Q ss_pred             CCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 042204          260 PRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIV  339 (559)
Q Consensus       260 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  339 (559)
                              ...++.+..++...+..+...+..++..+......         ..+.+...+.+.+..++..+..+++.+.
T Consensus       154 --------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~~  216 (276)
T d1oyza_         154 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRK  216 (276)
T ss_dssp             ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             --------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchhh
Confidence                    23567788888888999999999888887755442         2455677788888889999988887653


Q ss_pred             cCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcC-ChhHHHHHHH
Q 042204          340 AGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQNA-EINIKNWAAW  418 (559)
Q Consensus       340 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~-~~~v~~~a~~  418 (559)
                      .           ..+++.|+..+.++   .+|..++++|+.+.  ++         +.++.|..+|... |.+++..|+.
T Consensus       217 ~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~~---------~~~~~L~~~l~~~~d~~vr~~A~~  271 (276)
T d1oyza_         217 D-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--DK---------TLLPVLDTMLYKFDDNEIITSAID  271 (276)
T ss_dssp             C-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--CG---------GGHHHHHHHHTTSSCCHHHHHHHH
T ss_pred             h-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--CH---------HHHHHHHHHHccCCCHHHHHHHHH
Confidence            2           24577888888654   58999999999883  32         3788898888764 7789999888


Q ss_pred             HHH
Q 042204          419 AIS  421 (559)
Q Consensus       419 aL~  421 (559)
                      +|.
T Consensus       272 ~L~  274 (276)
T d1oyza_         272 KLK  274 (276)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.9e-09  Score=106.97  Aligned_cols=389  Identities=10%  Similarity=0.044  Sum_probs=247.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHH
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDTKV  180 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~  180 (559)
                      -.+++.+.|+|.+.+.+|...|..+...  ++       .+++..|...+.+++ .+.+|..|+-.|.|...........
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~--~~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~   73 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVE--NL-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   73 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhc--Cc-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence            3567788899999999999999997553  11       125677788776543 3689999999998887644322211


Q ss_pred             H-----------HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh-hhHhHHHHH
Q 042204          181 V-----------IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH-AKLSMLRTA  248 (559)
Q Consensus       181 i-----------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~-~~~~~~~~a  248 (559)
                      .           ....+.+.+++.+.++++. +..++.+++.++......   -.-.+.++.++..+... .+...+..+
T Consensus        74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          74 QYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence            1           1123455677777766543 334555666554221100   00124567777776432 345667788


Q ss_pred             HHHHHHhhcCC-CCCcHhhHhchHHHHHHhhccC--CHhHHHHHHHHHHHhccCChhHHH-HHHHhCcHHHHHHhhCCCC
Q 042204          249 TWTLSNFCRGM-PRPIFEQVRPALPVLAQLVHSN--DKEVLTDACWALYFLSNGKNDKIQ-AVIEAGVCPRLVELLGHRS  324 (559)
Q Consensus       249 ~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~~~  324 (559)
                      +.++..++... +.........+++.+...+.++  +.+++..++.++.++......... ......+.+.+...+.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            88888888654 2333334566788888888754  577999999999998865443221 1222345677888888899


Q ss_pred             CcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH------------
Q 042204          325 SSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV------------  392 (559)
Q Consensus       325 ~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l------------  392 (559)
                      +.++..++.++..++..........+.....+.+...+.+. ++.++..|+..+..++..........            
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  308 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  308 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence            99999999999999875554332223333344455566676 88999999999888864211111100            


Q ss_pred             --------HHcCCHHHHHHHhhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHH
Q 042204          393 --------IDAGLIGPLINLLQN-------AEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVT  457 (559)
Q Consensus       393 --------i~~~~i~~Li~lL~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~  457 (559)
                              ....+++.+...+..       .+..++..+..++..++.....+....     +++.+.+.+.++++.++.
T Consensus       309 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~  383 (458)
T d1ibrb_         309 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRD  383 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHH
Confidence                    011134444554432       234688888888888876543333332     567788888999999999


Q ss_pred             HHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          458 VCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       458 ~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      .++.+|..+........        ..++   +  ...++.|..+.+++++.||..|.+.+.++.
T Consensus       384 aal~~l~~i~~~~~~~~--------~~~~---l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         384 AAVMAFGCILEGPEPSQ--------LKPL---V--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHHHTSSSSCTTT--------TCTT---T--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHhH--------HHHH---H--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999988764321110        0001   1  234577778889999999999999998764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5e-10  Score=112.73  Aligned_cols=361  Identities=12%  Similarity=0.070  Sum_probs=227.0

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhccCCCCchHHHH-----------HhcCcHHHHHHhhcCCCCHHHHHHHHH
Q 042204           99 EIFAAMVAGVWSD--DNNLQLEATTKFRKLLSIERSPPIEEV-----------IQSGVVPRFVEFLMREDYPQLQYEAAW  165 (559)
Q Consensus        99 ~~l~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~i-----------i~~g~v~~Lv~lL~~~~~~~~~~~a~~  165 (559)
                      +.+..+...+.+.  +...+..|+..|++.+... .+....-           ....+.+.+++.+.+++ +. +..++.
T Consensus        34 ~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~  110 (458)
T d1ibrb_          34 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQ  110 (458)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-CchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHH
Confidence            3456666666543  5678889999999888653 2221111           12335566777777665 33 334555


Q ss_pred             HHHHHhcCCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhch-hhhH
Q 042204          166 ALTNIASKTSEDTKVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNE-HAKL  242 (559)
Q Consensus       166 ~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~-~~~~  242 (559)
                      ++..++......   -.-.+.++.++..+.+  .+..++..++.+++.++.........-.....++.++..+.. +.+.
T Consensus       111 ~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~  187 (458)
T d1ibrb_         111 CVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN  187 (458)
T ss_dssp             HHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCH
Confidence            666555411000   0013578888888765  567788889999998874432211111112245566666643 2356


Q ss_pred             hHHHHHHHHHHHhhcCCCC--CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhh
Q 042204          243 SMLRTATWTLSNFCRGMPR--PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELL  320 (559)
Q Consensus       243 ~~~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL  320 (559)
                      .++..++.++.++....+.  ..........+.+..++.+++++++..++.++..++..........+...+.+.+...+
T Consensus       188 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~  267 (458)
T d1ibrb_         188 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  267 (458)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            7889999999998865421  11223345667788888899999999999999999865554433333333445566667


Q ss_pred             CCCCCcchhhHHHHHHHhhcCChHHHHHH--------------------HhCCChHHHHHHhcCC------CchhHHHHH
Q 042204          321 GHRSSSVLSPALQTIGHIVAGDDFQTQCI--------------------INCGALPYLLVLLIHS------HKKSIKNHA  374 (559)
Q Consensus       321 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~--------------------~~~g~l~~L~~lL~~~------~~~~v~~~a  374 (559)
                      .+.++.++..|+..+..++..........                    ....+.+.+...+...      .+..++..|
T Consensus       268 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a  347 (458)
T d1ibrb_         268 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  347 (458)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHH
Confidence            77788888889988888764321111000                    0012234444544321      134588888


Q ss_pred             HHHHHHhhcC-CHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh
Q 042204          375 CWTISKITAG-NREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP  453 (559)
Q Consensus       375 ~~~L~nl~~~-~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  453 (559)
                      ..++..++.. ..+....     +++.+.+.+.++++.+|..|+.+|+.++.+..++.... .-..+++.|..++.++++
T Consensus       348 ~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~  421 (458)
T d1ibrb_         348 GVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSV  421 (458)
T ss_dssp             HHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCH
Confidence            8888888752 2222222     56677788888999999999999999987543332221 123478899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 042204          454 TIVTVCLKGLENILKVGE  471 (559)
Q Consensus       454 ~v~~~~l~~l~~il~~~~  471 (559)
                      .|+..|+++|.++...-.
T Consensus       422 ~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         422 VVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999986543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=6.4e-09  Score=113.13  Aligned_cols=397  Identities=13%  Similarity=0.144  Sum_probs=229.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 042204          102 AAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKVV  181 (559)
Q Consensus       102 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  181 (559)
                      +.+...+.+.++..+..++..+..+.... ......-.-..+++.+++.+.+++ +.++..++|+++.++.....   .+
T Consensus       372 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~  446 (861)
T d2bpta1         372 EFVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAE---SI  446 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGG---GS
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhch---hh
Confidence            34445567888899999999998876543 222222222347899999999888 99999999999998863211   11


Q ss_pred             HhCCCHHHHHHhh---CCCCHHHHHHHHHHHHHHhCCCchh-hhhhh--ccCCHHHHHHHhc-hhhhHhHHHHHHHHHHH
Q 042204          182 IDHGAVPIFVKLL---ASPNDDIREQAVWALGNVAGDSPRC-RDLVL--SEEALIPLLAQLN-EHAKLSMLRTATWTLSN  254 (559)
Q Consensus       182 ~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~--~~g~l~~Ll~ll~-~~~~~~~~~~a~~~L~n  254 (559)
                      .....++.++..+   ...++.++..+++++.+++...... .....  ....+..++.... ...+..++..+..++..
T Consensus       447 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~  526 (861)
T d2bpta1         447 DPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             CTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             hhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            1223344444332   1356788888999888876321110 00000  0112334444332 23456678888888888


Q ss_pred             hhcCCCCCcHhhHhchHHHHHHhh----ccCC-----------HhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh
Q 042204          255 FCRGMPRPIFEQVRPALPVLAQLV----HSND-----------KEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL  319 (559)
Q Consensus       255 L~~~~~~~~~~~~~~~l~~L~~lL----~~~d-----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l  319 (559)
                      +....+.........+.+.+...+    ....           ..++..++.++..+............ ..+++.+...
T Consensus       527 ~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~  605 (861)
T d2bpta1         527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRL  605 (861)
T ss_dssp             HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhh
Confidence            887655444444444444443333    2111           12344444555554432222211111 1245666666


Q ss_pred             hCC-CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCH
Q 042204          320 LGH-RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLI  398 (559)
Q Consensus       320 L~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i  398 (559)
                      +.. ++..++..++.+++.++..........++ .+++.|...+++. ++.++..|+.+++.++...++......+. ++
T Consensus       606 l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~~-i~  682 (861)
T d2bpta1         606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSDA-MM  682 (861)
T ss_dssp             HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHHH-HH
T ss_pred             cccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHHH-HH
Confidence            655 44668889999999988754433333333 5788899999888 88999999999999986444444444433 78


Q ss_pred             HHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCC----C-------hHHHHHHHHHHHH
Q 042204          399 GPLINLLQNA--EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCA----N-------PTIVTVCLKGLEN  465 (559)
Q Consensus       399 ~~Li~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~----d-------~~v~~~~l~~l~~  465 (559)
                      +.|++.+++.  +..++..++.+|+.++.........++-.  +++.+...+...    +       ..++..++.++..
T Consensus       683 ~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  760 (861)
T d2bpta1         683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVG  760 (861)
T ss_dssp             HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            8888888765  56889999999999876433333333322  445555544322    2       2356777777777


Q ss_pred             HHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHh----cCCCHHHHHHHHHHHHh
Q 042204          466 ILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQ----SHENNEIHEKSVKILET  520 (559)
Q Consensus       466 il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~----~~~~~~v~~~a~~il~~  520 (559)
                      ++..-....+      ...++...+.     +.+..+.    .+.+.++...+..+|..
T Consensus       761 i~~~~~~~~~------~~~p~~~~i~-----~~i~~~~~~~~~~~~~~~~~~~~~~i~~  808 (861)
T d2bpta1         761 IVAGLHDKPE------ALFPYVGTIF-----QFIAQVAEDPQLYSEDATSRAAVGLIGD  808 (861)
T ss_dssp             HHHHTTTCHH------HHGGGHHHHH-----HHHHHHHHCHHHHTSHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHH------HHHHHHHHHH-----HHHHHHHhCCccCCCHHHHHHHHHHHHH
Confidence            7653221100      1122333332     2333332    34567777777776643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.8e-09  Score=117.42  Aligned_cols=399  Identities=11%  Similarity=0.109  Sum_probs=242.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCC----CchHHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIER----SPPIEEVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTS  175 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~----~~~~~~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~  175 (559)
                      .++.++..+.+++...+..+...|+.++..-.    .......+-..+++.+...+.....+.++.+|+.+|..+.....
T Consensus        84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g  163 (1207)
T d1u6gc_          84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG  163 (1207)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            34444555555555555555555554433210    01111111222455556666665558999999999998876322


Q ss_pred             hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          176 EDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       176 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                      ...... ...+++.|+..+.+++..+|..|+.+|+.++...+..  .  -...+..++..+..+.+...++.++.++..+
T Consensus       164 ~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~--~--~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l  238 (1207)
T d1u6gc_         164 GLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI  238 (1207)
T ss_dssp             SSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             HhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH--H--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            111100 1135678888899999999999999999998654321  1  1234677777776666666777788899999


Q ss_pred             hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh----------------
Q 042204          256 CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL----------------  319 (559)
Q Consensus       256 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l----------------  319 (559)
                      ++..+.........++|.+...+..++++++..++.++..+....+........ .+++.+...                
T Consensus       239 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~  317 (1207)
T d1u6gc_         239 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDE  317 (1207)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC------------
T ss_pred             HHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHH
Confidence            887654444455788999999999999999999999988887544322111110 111111111                


Q ss_pred             ---------------------hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204          320 ---------------------LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI  378 (559)
Q Consensus       320 ---------------------L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L  378 (559)
                                           ..+.++.+|..++.+|+.++...++....... .+++.++..+... ++.+|..+..++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~-~~~~~L~~~l~d~-~~~vr~~~~~~l  395 (1207)
T d1u6gc_         318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKER-EENVKADVFHAY  395 (1207)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS-SSHHHHHHHHHH
T ss_pred             hhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcCC-chHHHHHHHHHH
Confidence                                 12234668889999999998766654444433 6889999999888 899999998888


Q ss_pred             HHhhcC---CHHH-------------HHHHH--HcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Q 042204          379 SKITAG---NREQ-------------IQAVI--DAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKC  440 (559)
Q Consensus       379 ~nl~~~---~~~~-------------~~~li--~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  440 (559)
                      ..+...   ....             ...+.  -..+++.+...+.+.+..++..+..++..+..........++.  .+
T Consensus       396 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~  473 (1207)
T d1u6gc_         396 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VL  473 (1207)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HH
T ss_pred             HHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hh
Confidence            877531   0000             00011  1235667777788889999999999998887532211111111  13


Q ss_pred             hHHHHhcCCCC--ChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 042204          441 IKPLCDLLPCA--NPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKIL  518 (559)
Q Consensus       441 l~~L~~lL~~~--d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il  518 (559)
                      ++.+...+...  ...++..++..+..++......        ...++.     ....+.+.....+++..+...|...+
T Consensus       474 ~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~--------~~~~~~-----~~l~~~~~~~~~~~~~~i~~~al~~~  540 (1207)
T d1u6gc_         474 VPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ--------VFHPHV-----QALVPPVVACVGDPFYKITSEALLVT  540 (1207)
T ss_dssp             HHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG--------GGHHHH-----TTTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHH--------HHHHHH-----HhhhhhHHHHHccccHHHHHHHHHHH
Confidence            55666666543  4567778888888877543221        111121     22345566666777788877776665


Q ss_pred             Hhh
Q 042204          519 ETY  521 (559)
Q Consensus       519 ~~~  521 (559)
                      ..+
T Consensus       541 ~~l  543 (1207)
T d1u6gc_         541 QQL  543 (1207)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=8.8e-08  Score=103.86  Aligned_cols=390  Identities=14%  Similarity=0.086  Sum_probs=241.8

Q ss_pred             HHHHH-HHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhH
Q 042204          101 FAAMV-AGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus       101 l~~lv-~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      +..++ ..+.|+|++.+..|-..|..+...  ++       .++++.+.+.+.+.+ .+.+|..|+-.|.|.........
T Consensus         6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~   76 (861)
T d2bpta1           6 FAQLLENSILSPDQNIRLTSETQLKKLSND--NF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK   76 (861)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--CH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--Cc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence            34444 456899999999999999886443  11       135677888886543 36899999999988765332211


Q ss_pred             HHH------------HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCC-chhhhhhhccCCHHHHHHHhchhhhHhHH
Q 042204          179 KVV------------IDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDS-PRCRDLVLSEEALIPLLAQLNEHAKLSML  245 (559)
Q Consensus       179 ~~i------------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~l~~Ll~ll~~~~~~~~~  245 (559)
                      ...            ....+-..++..+.++++.++..++.+++.++... |..+  .  ...++.|+..+....+...+
T Consensus        77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHH
T ss_pred             hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHH
Confidence            110            00123356777888899999999999999997421 1100  0  01356666666545556677


Q ss_pred             HHHHHHHHHhhcCCCCCc---HhhHhchHHHHHHhhc--cCCHhHHHHHHHHHHHhccCChhHHH-HHHHhCcHHHHHHh
Q 042204          246 RTATWTLSNFCRGMPRPI---FEQVRPALPVLAQLVH--SNDKEVLTDACWALYFLSNGKNDKIQ-AVIEAGVCPRLVEL  319 (559)
Q Consensus       246 ~~a~~~L~nL~~~~~~~~---~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~l  319 (559)
                      ..++.+|..++.......   ......+++.+...+.  ..+..++..++.++.++...-..... ......+++.+...
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  232 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA  232 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence            788999999987653222   2223445555555554  34578999999999988755443221 11223367778888


Q ss_pred             hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHH-----
Q 042204          320 LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVID-----  394 (559)
Q Consensus       320 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~-----  394 (559)
                      +.++++.++..++.++..++..........+..-+...+.....+. ++.++..++..+..++............     
T Consensus       233 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  311 (861)
T d2bpta1         233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSP  311 (861)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999999999875443322222222222334444566 8899999988888776421111111110     


Q ss_pred             -----------cCCHHHHHHHhhcC-------ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHH
Q 042204          395 -----------AGLIGPLINLLQNA-------EINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIV  456 (559)
Q Consensus       395 -----------~~~i~~Li~lL~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~  456 (559)
                                 ..+++.+...+...       +...+..+..++..++..........     .++.+...+.+.+...+
T Consensus       312 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  386 (861)
T d2bpta1         312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNR  386 (861)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHH
Confidence                       12455555655432       33567777777776655322122222     24455666788899999


Q ss_pred             HHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 042204          457 TVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETYW  522 (559)
Q Consensus       457 ~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~f  522 (559)
                      ..++.++..+......           ......+.  ..++.+..+..++++.|+..|.+.+.++.
T Consensus       387 ~~a~~~l~~i~~~~~~-----------~~~~~~l~--~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         387 EAAVMAFGSIMDGPDK-----------VQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             HHHHHHHHHTSSSSCH-----------HHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcch-----------hhHHHHHH--HHHHHHHHHhcCcchhhhhHHHHHHHHHH
Confidence            9999988877643211           11122222  24677888889999999999998887653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3e-07  Score=99.94  Aligned_cols=398  Identities=12%  Similarity=0.078  Sum_probs=245.1

Q ss_pred             HHHHHHHHHhcC--CCHHHHHHHHHHHHHhccCCCCchHH----------HHHhcCcHHHHHHhhcCCCCHHHHHHHHHH
Q 042204           99 EIFAAMVAGVWS--DDNNLQLEATTKFRKLLSIERSPPIE----------EVIQSGVVPRFVEFLMREDYPQLQYEAAWA  166 (559)
Q Consensus        99 ~~l~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~~----------~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~  166 (559)
                      +-+..+.+.+.+  .+...+..|+..|++.+.........          .-....+...+++.+.+++  .++..++.+
T Consensus        35 ~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~  112 (876)
T d1qgra_          35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQC  112 (876)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHH
Confidence            345556665644  34778999999999987642111111          0112234567778887765  355667888


Q ss_pred             HHHHhcCCchhHHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHHHHhCCCch--hhhhhhccCCHHHHHHHhchh-hh
Q 042204          167 LTNIASKTSEDTKVVIDHGAVPIFVKLLASP--NDDIREQAVWALGNVAGDSPR--CRDLVLSEEALIPLLAQLNEH-AK  241 (559)
Q Consensus       167 L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~--~r~~i~~~g~l~~Ll~ll~~~-~~  241 (559)
                      ++.++...-....   =.+.++.|++.+.++  ...+++.++.+|..++.+-..  ....  ....++.++..+... .+
T Consensus       113 i~~i~~~~~p~~~---Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~--~~~il~~i~~~l~~~~~~  187 (876)
T d1qgra_         113 VAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPS  187 (876)
T ss_dssp             HHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG--HHHHHHHHHHHHSTTCSC
T ss_pred             HHHHHHHHCCccc---cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHcCcCcc
Confidence            8888762100000   025788999888653  477899999999999753221  1111  122456666666432 35


Q ss_pred             HhHHHHHHHHHHHhhcCCCC--CcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHh
Q 042204          242 LSMLRTATWTLSNFCRGMPR--PIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVEL  319 (559)
Q Consensus       242 ~~~~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l  319 (559)
                      ..++..++.++.+.....+.  ........+++.+...+.+++++++..++.++..+.....+.....+...+.+.+...
T Consensus       188 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  267 (876)
T d1qgra_         188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA  267 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            67888888888887654311  1112223466777788888999999999999999987666555555555566777777


Q ss_pred             hCCCCCcchhhHHHHHHHhhcCChHHHHH--------------------HHhCCChHHHHHHhcCC------CchhHHHH
Q 042204          320 LGHRSSSVLSPALQTIGHIVAGDDFQTQC--------------------IINCGALPYLLVLLIHS------HKKSIKNH  373 (559)
Q Consensus       320 L~~~~~~v~~~al~~L~nl~~~~~~~~~~--------------------~~~~g~l~~L~~lL~~~------~~~~v~~~  373 (559)
                      +.+....++..++..+..++.........                    .....+++.+...+...      ....++..
T Consensus       268 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  347 (876)
T d1qgra_         268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA  347 (876)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHH
Confidence            88888888888888877776532211100                    00112234444444321      13357888


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCCh
Q 042204          374 ACWTISKITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANP  453 (559)
Q Consensus       374 a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  453 (559)
                      |..++..++...+..   ++. .+++.+...+.+.++..+..++.++..+..+.......... ..+++.+...+.++++
T Consensus       348 a~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~  422 (876)
T d1qgra_         348 AGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSV  422 (876)
T ss_dssp             HHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCcc
Confidence            888887775421111   111 13455566667788999999999999998776655544432 2468888999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          454 TIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       454 ~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      .++..+++++..+.+.-.....       ...+...+     ++.+.... ++++.++.++.+.+..+
T Consensus       423 ~vr~~a~~~l~~~~~~~~~~~~-------~~~~~~~~-----~~~l~~~l-~~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         423 VVRDTAAWTVGRICELLPEAAI-------NDVYLAPL-----LQCLIEGL-SAEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTS-------STTTHHHH-----HHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcchhhh-------hHHHhhhH-----HHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence            9999999999999876433211       01111111     23333332 45788888888777654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.4e-07  Score=102.61  Aligned_cols=358  Identities=11%  Similarity=0.091  Sum_probs=216.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhH
Q 042204          100 IFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQYEAAWALTNIASKTSEDT  178 (559)
Q Consensus       100 ~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nl~~~~~~~~  178 (559)
                      .-..+++.+.+++. .+..++..+..++..+ -+.-.   -.+++|.+++.+.+++ .+.++..++.+|..++..-....
T Consensus        91 ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~-~p~~~---Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~  165 (876)
T d1qgra_          91 VKNYVLHTLGTETY-RPSSASQCVAGIACAE-IPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ  165 (876)
T ss_dssp             HHHHHHHHTTTCCS-SSCHHHHHHHHHHHHH-GGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH-CCccc---cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHH
Confidence            44567777777664 4445666666665432 01000   1257899999887654 36788899999999876322111


Q ss_pred             HHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHHhCCCchhhhh-hhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          179 KVVIDHGAVPIFVKLLAS--PNDDIREQAVWALGNVAGDSPRCRDL-VLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       179 ~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~-i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                      ..-.-..+++.+++.+.+  ++.+++..++.++.+........-.. ....-.++.+...+ .+.++.++..++.++..+
T Consensus       166 ~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l  244 (876)
T d1qgra_         166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI  244 (876)
T ss_dssp             HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            111112467788887765  45789999999998886543221110 00011233344444 567788999999999999


Q ss_pred             hcCCCCCcHhhH-hchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHH--------------------HHHHhCcHH
Q 042204          256 CRGMPRPIFEQV-RPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQ--------------------AVIEAGVCP  314 (559)
Q Consensus       256 ~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~--------------------~~~~~g~l~  314 (559)
                      +...+....... ..+.+.+...+.+.++++...++..+..++........                    ......+++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (876)
T d1qgra_         245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP  324 (876)
T ss_dssp             HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            876543333333 33555666677788888888888777766642211110                    011122445


Q ss_pred             HHHHhhCCC-------CCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC-CH
Q 042204          315 RLVELLGHR-------SSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG-NR  386 (559)
Q Consensus       315 ~L~~lL~~~-------~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~  386 (559)
                      .+...+...       +..++..|..++..++.......   +. .+++.+...+.++ +...|..+++.++.+..+ ..
T Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~-~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~  399 (876)
T d1qgra_         325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEP  399 (876)
T ss_dssp             HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCH
T ss_pred             hhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---hh-hhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhH
Confidence            555554432       23466677777776664322211   11 2345566667777 888999999999999864 45


Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHH
Q 042204          387 EQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENI  466 (559)
Q Consensus       387 ~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~i  466 (559)
                      ......+.. +++.++..+.++++.++..++|++..++..-.........-..+++.+...+. .++.++..+++++.++
T Consensus       400 ~~~~~~~~~-~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         400 SQLKPLVIQ-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence            555554443 78899999999999999999999999876321110000000113444555553 4788899999999888


Q ss_pred             HHhh
Q 042204          467 LKVG  470 (559)
Q Consensus       467 l~~~  470 (559)
                      ....
T Consensus       478 ~~~~  481 (876)
T d1qgra_         478 AEAA  481 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=4.6e-06  Score=80.98  Aligned_cols=318  Identities=12%  Similarity=0.126  Sum_probs=192.2

Q ss_pred             CHHHHHHhhCC-CCHHHHHHHHHHHHHHhCCCchhhhh---hhc-cC-CHHHHHHHhchhhhHhHHHHHHHHHHHhhcCC
Q 042204          186 AVPIFVKLLAS-PNDDIREQAVWALGNVAGDSPRCRDL---VLS-EE-ALIPLLAQLNEHAKLSMLRTATWTLSNFCRGM  259 (559)
Q Consensus       186 ~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~---i~~-~g-~l~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~  259 (559)
                      ++..++++|.. ..+++.+..+..+.-+..+.+.....   +.. .. ...++...+ ...+.-....++..++.++...
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc-cCchhHHHHHHHHHHHHHHhcc
Confidence            56677777764 66777777777777776554432111   111 11 122333333 4445555666666777776654


Q ss_pred             CCCcH--hhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHH--hCcHHHHHHhhCC----C--------
Q 042204          260 PRPIF--EQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIE--AGVCPRLVELLGH----R--------  323 (559)
Q Consensus       260 ~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~----~--------  323 (559)
                      +....  .........+..+....+.+...-++.++..+..... ..+.+..  ...++.++..|..    .        
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~-~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCcc-HHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            22211  1122223334444467788888888888888885544 3334432  2344555555432    1        


Q ss_pred             -----CCcchhhHHHHHHHhhcCChHHHHHHHhC--CChHHHHHHhcCCCchhHHHHHHHHHHHhhcCC----HH-HHHH
Q 042204          324 -----SSSVLSPALQTIGHIVAGDDFQTQCIINC--GALPYLLVLLIHSHKKSIKNHACWTISKITAGN----RE-QIQA  391 (559)
Q Consensus       324 -----~~~v~~~al~~L~nl~~~~~~~~~~~~~~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~~-~~~~  391 (559)
                           ...++..++.++.-++. ++.....+.+.  +.++.++.+++.....++-+-++.++.|++...    .. ....
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~  311 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL  311 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence                 12456778888888886 44455555554  448888888865548889999999999998631    12 2334


Q ss_pred             HHHcCCHHHHHHHhhc---CChhHHHHHHHHHHHHhc----CC-----------------CH---------HHHHHHHHc
Q 042204          392 VIDAGLIGPLINLLQN---AEINIKNWAAWAISNATS----GG-----------------SH---------EQIKYLVRE  438 (559)
Q Consensus       392 li~~~~i~~Li~lL~~---~~~~v~~~a~~aL~nl~~----~~-----------------~~---------~~~~~l~~~  438 (559)
                      ++..++++. +..|..   .|+++....-. |..+..    .-                 +|         ++...+-+.
T Consensus       312 ~v~~~~l~~-l~~L~~r~~~Dedl~edl~~-L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         312 LLLGNALPT-VQSLSERKYSDEELRQDISN-LKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHCHHHH-HHHHHSSCCSSHHHHHHHHH-HHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHcchhHH-HHHHhcCCCCCHHHHHHHHH-HHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            556666655 455543   36665543322 221111    00                 11         112222111


Q ss_pred             --CChHHHHhcCC----------CCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCC
Q 042204          439 --KCIKPLCDLLP----------CANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHE  506 (559)
Q Consensus       439 --~~l~~L~~lL~----------~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~  506 (559)
                        .++..|+++|+          +.|+.+..+|+.-++.+++.-+.             -+..+++.|+-+.+.+|+.|+
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~-------------gr~il~~lg~K~~vM~Lm~h~  456 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIMELLNHS  456 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHHHTSCS
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc-------------hhHHHHHcCcHHHHHHHhcCC
Confidence              34788888885          35788888999889998876543             367789999999999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 042204          507 NNEIHEKSVKILETY  521 (559)
Q Consensus       507 ~~~v~~~a~~il~~~  521 (559)
                      |++|+..|...++++
T Consensus       457 d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         457 DSRVKYEALKATQAI  471 (477)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.46  E-value=6e-08  Score=76.92  Aligned_cols=109  Identities=18%  Similarity=0.233  Sum_probs=89.9

Q ss_pred             hCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHH
Q 042204          320 LGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIG  399 (559)
Q Consensus       320 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~  399 (559)
                      |+++++.||..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++.  .+.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~--~~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQ--DER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGC--SHH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcc--hhh---------hHH
Confidence            567889999999999987632            3467888999988 9999999999998873  232         467


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHH
Q 042204          400 PLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLE  464 (559)
Q Consensus       400 ~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~  464 (559)
                      .|+.+|.++++.+|..|+++|..+..   +.         .++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---cc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88999999999999999999998742   22         4677888999999999999998875

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=3.8e-06  Score=81.60  Aligned_cols=273  Identities=15%  Similarity=0.135  Sum_probs=174.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhccCCCCchHH---HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 042204          104 MVAGVWSDDNNLQLEATTKFRKLLSIERSPPIE---EVIQSGVVPRFVEFLMREDYPQLQYEAAWALTNIASKTSEDTKV  180 (559)
Q Consensus       104 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~---~ii~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  180 (559)
                      +...+.+++.-....+...+..+.+.. .....   ....  ....+-.+....+ ...+.-++.+|..+.. .++.|..
T Consensus       127 f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~--~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         127 FDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLK--NNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHH--CHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHH--hhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHH
Confidence            344455555556666666667766543 22222   1221  2233333445566 7899999999999998 7888887


Q ss_pred             HHh--CCCHHHHHHhhCC-----------------CCHHHHHHHHHHHHHHhCCCchhhhhhhcc--CCHHHHHHHhchh
Q 042204          181 VID--HGAVPIFVKLLAS-----------------PNDDIREQAVWALGNVAGDSPRCRDLVLSE--EALIPLLAQLNEH  239 (559)
Q Consensus       181 i~~--~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~--g~l~~Ll~ll~~~  239 (559)
                      +..  ...++.|+..|..                 ....++.+++.+++-++.+. .....+...  +.++.++.++...
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHHhhhHHHHHHHHHHHhh
Confidence            754  3456666665532                 12467888999999998653 344444443  3477888888777


Q ss_pred             hhHhHHHHHHHHHHHhhcCCCCCc-----HhhH-hchHHHHHHhhc--cCCHhHHHHHHHHHHH-------hc-------
Q 042204          240 AKLSMLRTATWTLSNFCRGMPRPI-----FEQV-RPALPVLAQLVH--SNDKEVLTDACWALYF-------LS-------  297 (559)
Q Consensus       240 ~~~~~~~~a~~~L~nL~~~~~~~~-----~~~~-~~~l~~L~~lL~--~~d~~v~~~a~~~L~~-------l~-------  297 (559)
                      ....+.+.++.+|.|++.......     ..++ .++++.+..+..  -.|+++..+.-..-..       ++       
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~  360 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA  360 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            889999999999999997642211     1122 344544433332  3467665543222111       11       


Q ss_pred             -------cCChhHH-HHHHHh----------CcHHHHHHhhCC----------CCCcchhhHHHHHHHhhcCChHHHHHH
Q 042204          298 -------NGKNDKI-QAVIEA----------GVCPRLVELLGH----------RSSSVLSPALQTIGHIVAGDDFQTQCI  349 (559)
Q Consensus       298 -------~~~~~~~-~~~~~~----------g~l~~L~~lL~~----------~~~~v~~~al~~L~nl~~~~~~~~~~~  349 (559)
                             ..++.+. +.+...          .++..|+++|.+          .++.+..-||.=||.++...+.....+
T Consensus       361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il  440 (477)
T d1ho8a_         361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL  440 (477)
T ss_dssp             HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence                   1111111 122211          368889999862          355677789999999999988887777


Q ss_pred             HhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhc
Q 042204          350 INCGALPYLLVLLIHSHKKSIKNHACWTISKITA  383 (559)
Q Consensus       350 ~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  383 (559)
                      -+.|+=..++.++.++ +++||.+|..++.-+..
T Consensus       441 ~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         441 DKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            7779999999999999 99999999999887643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.23  E-value=1.2e-07  Score=75.04  Aligned_cols=109  Identities=20%  Similarity=0.238  Sum_probs=88.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCHH
Q 042204          151 LMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEALI  230 (559)
Q Consensus       151 L~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~  230 (559)
                      |++++ +.+|..|+++|+.+..            ..++.|+..|.++++.+|..|+++|+++..           ...++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHH
Confidence            34555 6888888888876532            367889999999999999999999998732           12467


Q ss_pred             HHHHHhchhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHH
Q 042204          231 PLLAQLNEHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALY  294 (559)
Q Consensus       231 ~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  294 (559)
                      .|+..+ .+.++.++..++++|..+..          ...++.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888 67889999999999998743          457888899999999999999988773

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0059  Score=55.18  Aligned_cols=211  Identities=13%  Similarity=0.108  Sum_probs=150.2

Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhh----hhhhccCCHHHHHHHhchhhhHhHHHHHHHHHHHh
Q 042204          180 VVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCR----DLVLSEEALIPLLAQLNEHAKLSMLRTATWTLSNF  255 (559)
Q Consensus       180 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r----~~i~~~g~l~~Ll~ll~~~~~~~~~~~a~~~L~nL  255 (559)
                      .+...+.+..|+..|..-+-+.|..+..+++++.......|    +.+...  ...+..++....++++.-.+...|...
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            34456788899999999899999999999999986654433    333322  233333343334566666666667777


Q ss_pred             hcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhC---cHHHHHHhhCCCCCcchhhHH
Q 042204          256 CRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAG---VCPRLVELLGHRSSSVLSPAL  332 (559)
Q Consensus       256 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~L~~lL~~~~~~v~~~al  332 (559)
                      ++...-.........+..+.+.+..++-++..+|..++..+..........++...   ++.....+|.+++--.+..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            66643334444456666777888889999999999999998877666556666553   567778889888888999999


Q ss_pred             HHHHHhhcCChHH---HHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC--CHHHHHHHH
Q 042204          333 QTIGHIVAGDDFQ---TQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG--NREQIQAVI  393 (559)
Q Consensus       333 ~~L~nl~~~~~~~---~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~li  393 (559)
                      ..||.+.......   ...+-+..-+..++.+|++. +..++-+|..++--+.+.  .+..+..++
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL  286 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDIL  286 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHH
Confidence            9999998644322   22333445688899999999 999999999999888873  344444444

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0087  Score=64.57  Aligned_cols=305  Identities=11%  Similarity=0.096  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHHHHhCCCchhhhhhhc----cCCHHHH
Q 042204          159 LQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLA--SPNDDIREQAVWALGNVAGDSPRCRDLVLS----EEALIPL  232 (559)
Q Consensus       159 ~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~----~g~l~~L  232 (559)
                      .+..|...+..++....+.....+-.-+...+.....  +.+...++.++.+++.++............    ....+.+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            5666667777777644332221111111111222222  356778888999998887432211111100    0112222


Q ss_pred             HHH----hc--hhhhHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChh----
Q 042204          233 LAQ----LN--EHAKLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKND----  302 (559)
Q Consensus       233 l~l----l~--~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~----  302 (559)
                      ...    +.  .....-++..++|+++..+...+   ......+++.++.+|.+++..++..|++++..++.....    
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~  533 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccc
Confidence            222    21  12345678889999999887543   234567899999999999999999999999998853221    


Q ss_pred             -------HHHHHHHhCcHHHHHHhhCCCCCc-----chhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHh----cCCC
Q 042204          303 -------KIQAVIEAGVCPRLVELLGHRSSS-----VLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLL----IHSH  366 (559)
Q Consensus       303 -------~~~~~~~~g~l~~L~~lL~~~~~~-----v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL----~~~~  366 (559)
                             .....+. .++..++..+......     ....++.+++.++....+....... .+++.|...+    +++.
T Consensus       534 ~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~  611 (959)
T d1wa5c_         534 AFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPS  611 (959)
T ss_dssp             CBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCC
T ss_pred             hhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcc
Confidence                   1111111 2344555555433221     2334666666665322111110100 1233333333    3443


Q ss_pred             chhHHHHHHHHHHHhhc-CCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 042204          367 KKSIKNHACWTISKITA-GNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLC  445 (559)
Q Consensus       367 ~~~v~~~a~~~L~nl~~-~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  445 (559)
                      ++.....+..+++.+.. .+++....+. ..++|.+...++....+....+...+..+...... .-..+  ...++.+.
T Consensus       612 ~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--~~l~~~l~  687 (959)
T d1wa5c_         612 NPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSAT-IPESI--KPLAQPLL  687 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSS-CCTTT--GGGHHHHT
T ss_pred             chHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCC-ccHHH--HHHHHHHh
Confidence            56666677777777764 2344333333 33688888888877666777777666665543210 00000  11233443


Q ss_pred             hcCCCCChHHHHHHHHHHHHHHHhhhh
Q 042204          446 DLLPCANPTIVTVCLKGLENILKVGEA  472 (559)
Q Consensus       446 ~lL~~~d~~v~~~~l~~l~~il~~~~~  472 (559)
                      .............+...+.+++..+..
T Consensus       688 ~~~~~~~~~~~~~~~~~l~~~~~~~~~  714 (959)
T d1wa5c_         688 APNVWELKGNIPAVTRLLKSFIKTDSS  714 (959)
T ss_dssp             SGGGGCCTTTHHHHHHHHHHHHHHHGG
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHhCHH
Confidence            333333444456667777777766544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.58  E-value=0.28  Score=45.25  Aligned_cols=208  Identities=16%  Similarity=0.142  Sum_probs=124.4

Q ss_pred             CHHHHHHhhCCCC--HHHHHHHHHHHHHHhCCCchhhhhhhccCCHHHHHHHhchh---hhHhHHHHHHHHHHHhhc---
Q 042204          186 AVPIFVKLLASPN--DDIREQAVWALGNVAGDSPRCRDLVLSEEALIPLLAQLNEH---AKLSMLRTATWTLSNFCR---  257 (559)
Q Consensus       186 ~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l~~Ll~ll~~~---~~~~~~~~a~~~L~nL~~---  257 (559)
                      ++..+.+++.+..  .......++.+.....  |. .+      .+..+..++...   .++.+...+..++++|..   
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--AT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4556666665533  2223334444443322  22 22      245555665322   345666666666665543   


Q ss_pred             -CCCCCcHhhHhchHHHHHHhhccCCHhHHHHHHHHHHHhccCChhHHHHHHHhCcHHHHHHhhCCC-------CCcchh
Q 042204          258 -GMPRPIFEQVRPALPVLAQLVHSNDKEVLTDACWALYFLSNGKNDKIQAVIEAGVCPRLVELLGHR-------SSSVLS  329 (559)
Q Consensus       258 -~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-------~~~v~~  329 (559)
                       ..+......+..+...+.+.....+.+-+.-++.+|+|+..  +         +.++.|..++...       +..+|.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence             33333333344455555566667788888888999999862  2         2457777777542       345889


Q ss_pred             hHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhc-CCCchhHHHHHHHHHHHhhcCCHHHHHHHHHcCCHHHHHHHhh-c
Q 042204          330 PALQTIGHIVAGDDFQTQCIINCGALPYLLVLLI-HSHKKSIKNHACWTISKITAGNREQIQAVIDAGLIGPLINLLQ-N  407 (559)
Q Consensus       330 ~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~li~~~~i~~Li~lL~-~  407 (559)
                      .|++++.+++...+...+        +.+..++. ..+++++|..|+..|... ..+..         .+..+...+. +
T Consensus       229 aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            999999999887654432        34455543 333788998888888553 23344         3344555554 4


Q ss_pred             CChhHHHHHHHHHHHHhcCCCHHH
Q 042204          408 AEINIKNWAAWAISNATSGGSHEQ  431 (559)
Q Consensus       408 ~~~~v~~~a~~aL~nl~~~~~~~~  431 (559)
                      ++..|...+...|.++.....|..
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcch
Confidence            577888888888989888655543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.098  Score=47.01  Aligned_cols=203  Identities=13%  Similarity=0.106  Sum_probs=148.5

Q ss_pred             HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh----HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHH
Q 042204          305 QAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAGDD----FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISK  380 (559)
Q Consensus       305 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~----~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  380 (559)
                      +.+...+++..|+..|..-+.+.|..+..+.+++.....    ...+.+...  .+.|..++..-+++++--.+...|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            456777888999999988888889999999999886432    233444432  23444444333255666666666666


Q ss_pred             hhcCCHHHHHHHHHcCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC---ChHHHHhcCCCCChHHHH
Q 042204          381 ITAGNREQIQAVIDAGLIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREK---CIKPLCDLLPCANPTIVT  457 (559)
Q Consensus       381 l~~~~~~~~~~li~~~~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~l~~L~~lL~~~d~~v~~  457 (559)
                      ++. .+.....++....+..+.+.++.++.++...|...+..+... .+.....++..+   +...+..+|.+++--++.
T Consensus       141 cik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh-CHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            654 466677888888899999999999999999999999988876 345454445433   467788899999999999


Q ss_pred             HHHHHHHHHHHhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 042204          458 VCLKGLENILKVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSVKILETY  521 (559)
Q Consensus       458 ~~l~~l~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  521 (559)
                      .++..|..++-....          .+.+...+.+..-+..+.+|..+....|+-.|..+..-|
T Consensus       219 qSlKLLgelLldr~N----------~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvF  272 (330)
T d1upka_         219 QSLKLLGELLLDRHN----------FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  272 (330)
T ss_dssp             HHHHHHHHHHHSGGG----------HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhH----------HHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhh
Confidence            999999999854332          223455666677788889999999999988888877644

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.14  E-value=0.00073  Score=59.78  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=28.1

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHH
Q 042204          150 FLMREDYPQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWAL  209 (559)
Q Consensus       150 lL~~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L  209 (559)
                      +|.++. .+++..|++                  .-.+..|..+++++++.||..++..|
T Consensus        50 ~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          50 YLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             GTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             HhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHc
Confidence            566666 678766653                  12356677888888889988887543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.092  Score=56.12  Aligned_cols=178  Identities=11%  Similarity=0.118  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchh--------hhhhhccCC
Q 042204          157 PQLQYEAAWALTNIASKTSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRC--------RDLVLSEEA  228 (559)
Q Consensus       157 ~~~~~~a~~~L~nl~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--------r~~i~~~g~  228 (559)
                      +.++..++|+++..+.....  ...  ..+++.++.+|.+++..++..|++++..++......        .+.+  ...
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l--~p~  545 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI--SNS  545 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT--TTT
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHH--Hhh
Confidence            78999999999998874321  222  247889999999999999999999999998532211        0111  112


Q ss_pred             HHHH----HHHhchhh----hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhc-----cCCHhHHHHHHHHHHH
Q 042204          229 LIPL----LAQLNEHA----KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVH-----SNDKEVLTDACWALYF  295 (559)
Q Consensus       229 l~~L----l~ll~~~~----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~  295 (559)
                      ++.+    +..+....    .......++.++..+..............+++.+...+.     ..++.....+..+++.
T Consensus       546 l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~  625 (959)
T d1wa5c_         546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA  625 (959)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            3333    33332111    111123355555555433322222333445555554442     2356677777778877


Q ss_pred             hccCC-hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 042204          296 LSNGK-NDKIQAVIEAGVCPRLVELLGHRSSSVLSPALQTIGHIVAG  341 (559)
Q Consensus       296 l~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  341 (559)
                      +.... ++.... +...++|.+...+..........++..+..+...
T Consensus       626 l~~~~~~~~~~~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~  671 (959)
T d1wa5c_         626 ILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (959)
T ss_dssp             HHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHhcCchhHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Confidence            76432 333322 3345678888888777777777777777766643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.73  E-value=0.0036  Score=55.16  Aligned_cols=158  Identities=9%  Similarity=0.094  Sum_probs=80.5

Q ss_pred             HHHHHHhhCCCCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 042204          313 CPRLVELLGHRSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAGNREQIQAV  392 (559)
Q Consensus       313 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  392 (559)
                      +..|..+++++++.||..|+..|+                  .+.|..++..+ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456677888888888888765442                  12344455555 6666666554321             


Q ss_pred             HHcCCHHHHHHHhhcCChhHHHHHHHH-----HHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHH
Q 042204          393 IDAGLIGPLINLLQNAEINIKNWAAWA-----ISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENIL  467 (559)
Q Consensus       393 i~~~~i~~Li~lL~~~~~~v~~~a~~a-----L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il  467 (559)
                           .+.|..++.++++.|+..+...     |..+....+++....+...-..+.|..+++++++.|+..+...+..  
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~--  188 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG--  188 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCG--
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCc--
Confidence                 1223334444555555444432     1222222233333333333345677778888888888877765421  


Q ss_pred             HhhhhhcccccccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHH
Q 042204          468 KVGEAEKNMDTAIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHEKSV  515 (559)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~~a~  515 (559)
                         +.....-  ....-.......+..+.+.|..| .+++++|++.|.
T Consensus       189 ---~~L~~l~--~D~d~~VR~aaae~~~~~ll~~L-~D~d~~VR~aA~  230 (233)
T d1lrva_         189 ---DDLLELL--HDPDWTVRLAAVEHASLEALREL-DEPDPEVRLAIA  230 (233)
T ss_dssp             ---GGGGGGG--GCSSHHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHH
T ss_pred             ---HHHHHHH--hCCCHHHHHHHHHhccHHHHHHh-CCCCHHHHHHHH
Confidence               0000000  00111122333334445555555 678888888764

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.41  E-value=0.97  Score=41.39  Aligned_cols=240  Identities=16%  Similarity=0.148  Sum_probs=140.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCch----HHHHHhcC---cHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPP----IEEVIQSG---VVPRFVEFLMREDYPQLQYEAAWALTNIA  171 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~----~~~ii~~g---~v~~Lv~lL~~~~~~~~~~~a~~~L~nl~  171 (559)
                      ..+-.+++.++.-+.+........+..   .  ...    .+.+...|   .+..+.+++.+..- .- .+|...|..++
T Consensus        43 ~kF~~Lv~~lR~~~~e~l~~v~~~~~~---~--~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~l-s~-~ea~~~l~~l~  115 (336)
T d1lsha1          43 AKFLRLTAFLRNVDAGVLQSIWHKLHQ---Q--KDYRRWILDAVPAMATSEALLFLKRTLASEQL-TS-AEATQIVASTL  115 (336)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHTT---S--HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhc---C--hhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC-CH-HHHHHHHHHHh
Confidence            356677888887765544443333211   1  112    23333444   44556677766552 22 23445555555


Q ss_pred             cCCchhHHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHHHHhC----CCchhhhhhhccCCHHHHHHHhc---hhh
Q 042204          172 SKTSEDTKVVIDHGAVPIFVKLLAS----PNDDIREQAVWALGNVAG----DSPRCRDLVLSEEALIPLLAQLN---EHA  240 (559)
Q Consensus       172 ~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~l~~Ll~ll~---~~~  240 (559)
                      .. ......     .+..+..++.+    .++.++..+.-++++++.    ..+.+.+     ..++.+...+.   ...
T Consensus       116 ~~-~~Pt~~-----~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~  184 (336)
T d1lsha1         116 SN-QQATRE-----SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRA  184 (336)
T ss_dssp             HT-CCCCHH-----HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTT
T ss_pred             cc-CCCCHH-----HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhccc
Confidence            52 222222     34556667765    578899999999998863    2222222     23455555553   233


Q ss_pred             hHhHHHHHHHHHHHhhcCCCCCcHhhHhchHHHHHHhhcc-------CCHhHHHHHHHHHHHhccCChhHHHHHHHhCcH
Q 042204          241 KLSMLRTATWTLSNFCRGMPRPIFEQVRPALPVLAQLVHS-------NDKEVLTDACWALYFLSNGKNDKIQAVIEAGVC  313 (559)
Q Consensus       241 ~~~~~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l  313 (559)
                      +.+-...++.+|.|+-.          ...++.+..++..       ....++..|++++.++....+...+        
T Consensus       185 ~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------  246 (336)
T d1lsha1         185 KEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------  246 (336)
T ss_dssp             CHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------
T ss_pred             chHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------
Confidence            44555667888998853          3456777777743       2467999999999999877664432        


Q ss_pred             HHHHHhhCC--CCCcchhhHHHHHHHhhcCChHHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHHHHhhcC
Q 042204          314 PRLVELLGH--RSSSVLSPALQTIGHIVAGDDFQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTISKITAG  384 (559)
Q Consensus       314 ~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  384 (559)
                      +.+..++.+  .+.++|..|+..|...  .+. .       ..+..+...+....+..|+....-.|.+++..
T Consensus       247 ~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~-~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         247 EIVLPIFLNVAIKSELRIRSCIVFFES--KPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhc--CCC-H-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            344444433  3566888887777442  222 1       13456777776655788888888888888763

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.45  Score=43.91  Aligned_cols=157  Identities=11%  Similarity=0.082  Sum_probs=103.4

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC---------C-CCHHHHHHHHHHHHHHh
Q 042204          103 AMVAGVWSDD-NNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR---------E-DYPQLQYEAAWALTNIA  171 (559)
Q Consensus       103 ~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~---------~-~~~~~~~~a~~~L~nl~  171 (559)
                      ..|..|+++- .+.....+..|+--+.......++.+ ..+++..|+.+|..         . .++..+.+++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            4566666543 23344555666655655433346666 45567777777631         1 11568999999999999


Q ss_pred             cCCchhHHH-HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCc--hhhhh----------hhccCCHHHHHHHhch
Q 042204          172 SKTSEDTKV-VIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSP--RCRDL----------VLSEEALIPLLAQLNE  238 (559)
Q Consensus       172 ~~~~~~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~--~~r~~----------i~~~g~l~~Ll~ll~~  238 (559)
                      . +...... +-..+++..++..|.++.+.++..|+..|..+|....  .....          .-+.+-+.+++..+..
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8 4444444 4456889999999999999999999999999985432  11122          2234567788888866


Q ss_pred             hhhHhHHHHHHHHHHHhhcCCCC
Q 042204          239 HAKLSMLRTATWTLSNFCRGMPR  261 (559)
Q Consensus       239 ~~~~~~~~~a~~~L~nL~~~~~~  261 (559)
                      ..+.+....++..+..++.+.+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            66667777777777777766544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.15  E-value=1.3  Score=40.53  Aligned_cols=162  Identities=15%  Similarity=0.092  Sum_probs=109.1

Q ss_pred             ChHHHHHHHhCCChHHHHHHhc----CC------CchhHHHHHHHHHHHhhcCCHHHHHHHHH-cCCHHHHHHHhhcCCh
Q 042204          342 DDFQTQCIINCGALPYLLVLLI----HS------HKKSIKNHACWTISKITAGNREQIQAVID-AGLIGPLINLLQNAEI  410 (559)
Q Consensus       342 ~~~~~~~~~~~g~l~~L~~lL~----~~------~~~~v~~~a~~~L~nl~~~~~~~~~~li~-~~~i~~Li~lL~~~~~  410 (559)
                      +....+.+ ..+++..|+.+|.    ..      .+.....++..+|..+.. +......+++ ...+..+...|.++.+
T Consensus        35 ~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~  112 (343)
T d2bnxa1          35 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVP  112 (343)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred             CchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCCch
Confidence            33444444 3445555666552    11      134567788888888864 5666666664 4678999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCC-----HH------HHHHHHHcCChHHHHhcCCCC-ChHHHHHHHHHHHHHHHhhhhhccccc
Q 042204          411 NIKNWAAWAISNATSGGS-----HE------QIKYLVREKCIKPLCDLLPCA-NPTIVTVCLKGLENILKVGEAEKNMDT  478 (559)
Q Consensus       411 ~v~~~a~~aL~nl~~~~~-----~~------~~~~l~~~~~l~~L~~lL~~~-d~~v~~~~l~~l~~il~~~~~~~~~~~  478 (559)
                      .++..|...|..++....     ..      .....-+.+-..++++.+... +.+....++..+..++...+....   
T Consensus       113 ~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~---  189 (343)
T d2bnxa1         113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---  189 (343)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH---
T ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH---
Confidence            999999999988875421     11      112223456688888888654 567788888888777765443321   


Q ss_pred             ccCcchHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 042204          479 AIGDVNQYAQLVEEAEGLEKIENLQSHENNEIHE  512 (559)
Q Consensus       479 ~~~~~~~~~~~i~~~g~l~~l~~L~~~~~~~v~~  512 (559)
                          -...+..+..+|..+.|++|....++++..
T Consensus       190 ----R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         190 ----RVHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             ----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             ----HHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence                133667788999999999999888887644

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=11  Score=33.76  Aligned_cols=214  Identities=14%  Similarity=0.087  Sum_probs=116.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcC---CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHHhCCCchhhhhhhccCCH
Q 042204          153 REDYPQLQYEAAWALTNIASK---TSEDTKVVIDHGAVPIFVKLLASPNDDIREQAVWALGNVAGDSPRCRDLVLSEEAL  229 (559)
Q Consensus       153 ~~~~~~~~~~a~~~L~nl~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~l  229 (559)
                      .+.+|.++. +...|..+...   ++......++...+..|+.++.++++.-|+.....|.++-+.....|..+.+ ...
T Consensus        99 e~sWpHL~l-VY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~  176 (343)
T d2jaka1          99 EAAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QIN  176 (343)
T ss_dssp             CTTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHH
T ss_pred             CCCCchHHH-HHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHH
Confidence            344565554 33444444431   1222333444556788999999999999999999999998777777766543 234


Q ss_pred             HHHHHHhchhhhHhHHHHHHHHHHHhhcCCCCC-cHhhHhchHHHHHHhhccCCHh-HHHHHHHHHHHhccCChhHHHHH
Q 042204          230 IPLLAQLNEHAKLSMLRTATWTLSNFCRGMPRP-IFEQVRPALPVLAQLVHSNDKE-VLTDACWALYFLSNGKNDKIQAV  307 (559)
Q Consensus       230 ~~Ll~ll~~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~  307 (559)
                      ..+.+.+..+....-...+++.+..+..+...+ ..+...-....++.|.+...-. .-..-..++......++....  
T Consensus       177 ~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~--  254 (343)
T d2jaka1         177 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE--  254 (343)
T ss_dssp             HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHH--
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHH--
Confidence            445555544444445566777888888776333 3333344445555555544322 122223333333333333322  


Q ss_pred             HHhCcHHHHHHhhCC---CCCcchhhHHHHHHHhhcCCh-HHHHHHHhCCChHHHHHHhcCCCchhHHHHHHHHH
Q 042204          308 IEAGVCPRLVELLGH---RSSSVLSPALQTIGHIVAGDD-FQTQCIINCGALPYLLVLLIHSHKKSIKNHACWTI  378 (559)
Q Consensus       308 ~~~g~l~~L~~lL~~---~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~v~~~a~~~L  378 (559)
                            +.+-.++++   .+..-...-+.-|..+....+ ...+.+.. -+...+...+.++ +.+|.+.|+...
T Consensus       255 ------~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~-~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         255 ------PVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             ------HHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHH-HHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             ------HHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence                  122233333   333333444555666554433 22222222 4566777777888 888877776544

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.12  E-value=2.3  Score=33.34  Aligned_cols=94  Identities=16%  Similarity=0.152  Sum_probs=64.7

Q ss_pred             cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCCCChHHHHHHHHHHHHHHHhhhhhcccccccCcchHH
Q 042204          407 NAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPCANPTIVTVCLKGLENILKVGEAEKNMDTAIGDVNQY  486 (559)
Q Consensus       407 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~~l~~l~~il~~~~~~~~~~~~~~~~~~~  486 (559)
                      ++|+....+.|..+..  ....+..        ++..|..-+.++++.++..++..|..+++....            .+
T Consensus        20 ~~dw~~il~icD~I~~--~~~~~k~--------a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~------------~f   77 (145)
T d1dvpa1          20 EPDWPSILLICDEINQ--KDVTPKN--------AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA------------PV   77 (145)
T ss_dssp             SCCHHHHHHHHHHHHT--TSSCHHH--------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HH
T ss_pred             CCCHHHHHHHHHHHhC--CCccHHH--------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccch------------HH
Confidence            3466666666666541  2212222        455566667889999999999999999876432            25


Q ss_pred             HHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHHHhhc
Q 042204          487 AQLVEEAEGLEKIENLQ-SHENNEIHEKSVKILETYW  522 (559)
Q Consensus       487 ~~~i~~~g~l~~l~~L~-~~~~~~v~~~a~~il~~~f  522 (559)
                      ...+..-+.++.+.++. ...+..|++++..+++.+-
T Consensus        78 ~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  114 (145)
T d1dvpa1          78 HEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA  114 (145)
T ss_dssp             HHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            55666666777777775 4468899999999999863

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=4.5  Score=31.52  Aligned_cols=72  Identities=8%  Similarity=-0.044  Sum_probs=59.7

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC------CChHHHHHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC------ANPTIVTVCLKGLENILK  468 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~~l~~l~~il~  468 (559)
                      .+..|..-|.++++.++..|+..|-.+..++.+.....+...+++..|..++..      .+..|...++..+.....
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            345567778889999999999999999999888888888888999999998853      456788888888877643

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.35  E-value=1.8  Score=33.98  Aligned_cols=76  Identities=8%  Similarity=-0.023  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhccCCCCchHHHHHhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHhc
Q 042204           99 EIFAAMVAGVWSDDNNLQLEATTKFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR------EDYPQLQYEAAWALTNIAS  172 (559)
Q Consensus        99 ~~l~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~v~~Lv~lL~~------~~~~~~~~~a~~~L~nl~~  172 (559)
                      .++..+.+.|+++++..++.|+..|..++..-......++.+.+++..|+.++..      .+ +.++..++..+..-+.
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~-~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCc-HHHHHHHHHHHHHHHH
Confidence            4778888999999999999999999888766445567788888999999999863      34 7899999998888766


Q ss_pred             CCc
Q 042204          173 KTS  175 (559)
Q Consensus       173 ~~~  175 (559)
                      ..+
T Consensus       124 ~fp  126 (145)
T d1ujka_         124 GLP  126 (145)
T ss_dssp             HCT
T ss_pred             HCC
Confidence            443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.19  E-value=4.1  Score=31.70  Aligned_cols=72  Identities=10%  Similarity=-0.021  Sum_probs=59.4

Q ss_pred             CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcCCC------CChHHHHHHHHHHHHHHH
Q 042204          397 LIGPLINLLQNAEINIKNWAAWAISNATSGGSHEQIKYLVREKCIKPLCDLLPC------ANPTIVTVCLKGLENILK  468 (559)
Q Consensus       397 ~i~~Li~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~~l~~l~~il~  468 (559)
                      .+..|..-+.++++.++..|+..|-.+..++.+.....+....+++.|..++..      .++.|...++..+.....
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            345566778889999999999999999999888888888888899999999853      467899888888877643