Citrus Sinensis ID: 042286

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---

MSTLPLLILYTSLLAIVISFLFSLLRNRRRHSSHRLPPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGNKHTDLLGTLISLMDDANGEEKLTETEIKALLL

ccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEcccccEEEEccHHHHHHHHHHcccccccccccHHHHHHHcccccEEEccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccEEEEEc

ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEccHHHcccccHHHHHHHHHHcccEEEEEcccccEEEEccHHHHHHHHHHccHHHccccccHHHHHHEcccccEEEccccHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccEccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccEcccccEEEEEc

MSTLPLLILYTSLLAIVISFLFSLLRNrrrhsshrlppgpkpwpivgnlphlgpmphqsiAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKihdsnfsnrppnsgakhiaynyqdivfrpygprwRMLRKISSVhlfsgkaldDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFrvfgdgtggsdpradEFKSMVVELMVLAGVfnvgdfvpaleRLDLQGVARKMKKLHKRFDVFLSDILEERkmngrdggnkhTDLLGTLISLmddangeeKLTETEIKALLL

MSTLPLLILYTSLLAIVISFLFSLLRNRRRHsshrlppgpkpWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKihdsnfsnrppnSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEErkmngrdggnkHTDLLGTLISLmddangeekLTETEIKALLL

MstlpllilytsllAIVIsflfsllrnrrrhsshrlPPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFvdvvvaasasvaaQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGNKHTDLLGTLISLMDDANGEEKLTETEIKALLL

***LPLLILYTSLLAIVISFLFSLLRN***************WPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSN*********AKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGG****ADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILE***************LLGTLIS*********************

*STLPLLILYTSLLAIVISFLFS******************PWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARA********VNLAQRLNLCVVNALGRVMLGFRVFGD*********DEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDIL*****************LGTLISLMDDA**EEKLTETEIKALLL

MSTLPLLILYTSLLAIVISFLFSLLRNR********PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGNKHTDLLGTLISLMDDANGEEKLTETEIKALLL

*STLPLLILYTSLLAIVISFLFSLLRNRRRHSSHRLPPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNGR***NKHTDLLGTLISLMDDANGEEKLTETEIKALLL

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SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		303	2.2.26 [Sep-21-2011]
Q9SD85		513	Flavonoid 3'-monooxygenas	yes	no	0.973	0.575	0.642	1e-108
Q9SBQ9		512	Flavonoid 3'-monooxygenas	N/A	no	0.960	0.568	0.663	1e-97
Q96418		510	Flavonoid 3',5'-hydroxyla	N/A	no	0.894	0.531	0.471	4e-69
O04790		510	Flavonoid 3',5'-hydroxyla	N/A	no	0.894	0.531	0.468	4e-68
P37120		513	Flavonoid 3',5'-hydroxyla	N/A	no	0.877	0.518	0.467	8e-68
P48418		506	Flavonoid 3',5'-hydroxyla	N/A	no	0.910	0.545	0.444	4e-67
P48419		508	Flavonoid 3',5'-hydroxyla	N/A	no	0.910	0.543	0.448	9e-66
Q96581		516	Flavonoid 3',5'-hydroxyla	N/A	no	0.881	0.517	0.450	3e-65
O04773		523	Flavonoid 3',5'-hydroxyla	N/A	no	0.970	0.562	0.390	5e-57
Q50EK4		525	Cytochrome P450 750A1 OS=	N/A	no	0.920	0.531	0.367	4e-50

>sp\|Q9SD85\|F3PH_ARATH Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1	Back alignment and function desciption

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/305 (64%), Positives = 246/305 (80%), Gaps = 10/305 (3%)

Query: 1   MSTLPLLILYTSLLAIVISFLFSLLRNRRRHSSHRLPPGPKPWPIVGNLPHLGPMPHQSI 60
           M+TL L IL  ++L +++  +FS  RNR  ++  RLPPGP PWPI+GNLPH+G  PH+++
Sbjct: 1   MATLFLTILLATVLFLILR-IFSHRRNRSHNN--RLPPGPNPWPIIGNLPHMGTKPHRTL 57

Query: 61  AGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAYNYQDIV 120
           + +  T+GP+++LRLGFVDVVVAAS SVA QFLKIHD+NF++RPPNSGAKH+AYNYQD+V
Sbjct: 58  SAMVTTYGPILHLRLGFVDVVVAASKSVAEQFLKIHDANFASRPPNSGAKHMAYNYQDLV 117

Query: 121 FRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLC 180
           F PYG RWR+LRKISSVHLFS KAL+D++HVRQEE+  L R L   GT+PVNL Q +N+C
Sbjct: 118 FAPYGHRWRLLRKISSVHLFSAKALEDFKHVRQEEVGTLTRELVRVGTKPVNLGQLVNMC 177

Query: 181 VVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGV 240
           VVNALGR M+G R+FG     +D +ADEF+SMV E+M LAGVFN+GDFVP+L+ LDLQGV
Sbjct: 178 VVNALGREMIGRRLFG---ADADHKADEFRSMVTEMMALAGVFNIGDFVPSLDWLDLQGV 234

Query: 241 ARKMKKLHKRFDVFLSDILEERKMNGRDGGNKHTDLLGTLISLM-DDANGE-EKLTETEI 298
           A KMK+LHKRFD FLS IL+E +MNG+D   KHTD+L TLISL   D +G+   LT+TEI
Sbjct: 235 AGKMKRLHKRFDAFLSSILKEHEMNGQD--QKHTDMLSTLISLKGTDLDGDGGSLTDTEI 292

Query: 299 KALLL 303
           KALLL
Sbjct: 293 KALLL 297

Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state. Convert naringenin to eriodictyol and dihydrokaempferol to dihydroquercetin.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 2EC: 1

>sp\|Q9SBQ9\|F3PH_PETHY Flavonoid 3'-monooxygenase OS=Petunia hybrida GN=CYP75B2 PE=2 SV=1	Back alignment and function description

>sp\|Q96418\|C75A5_EUSER Flavonoid 3',5'-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=CYP75A5 PE=2 SV=1	Back alignment and function description

>sp\|O04790\|C75A7_EUSER Flavonoid 3',5'-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=CYP75A7 PE=2 SV=1	Back alignment and function description

>sp\|P37120\|C75A2_SOLME Flavonoid 3',5'-hydroxylase OS=Solanum melongena GN=CYP75A2 PE=2 SV=1	Back alignment and function description

>sp\|P48418\|C75A1_PETHY Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida GN=CYP75A1 PE=2 SV=1	Back alignment and function description

>sp\|P48419\|C75A3_PETHY Flavonoid 3',5'-hydroxylase 2 OS=Petunia hybrida GN=CYP75A3 PE=2 SV=1	Back alignment and function description

>sp\|Q96581\|C75A4_GENTR Flavonoid 3',5'-hydroxylase OS=Gentiana triflora GN=CYP75A4 PE=2 SV=1	Back alignment and function description

>sp\|O04773\|C75A6_CAMME Flavonoid 3',5'-hydroxylase OS=Campanula medium GN=CYP75A6 PE=2 SV=1	Back alignment and function description

>sp\|Q50EK4\|C75A1_PINTA Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		303
225457235		509	PREDICTED: flavonoid 3'-monooxygenase [V	0.966	0.575	0.743	1e-117
147833535		509	hypothetical protein VITISV_041731 [Viti	0.966	0.575	0.743	1e-117
78183422		509	flavonoid 3'-hydroxylase [Vitis vinifera	0.957	0.569	0.751	1e-116
78183424		509	flavonoid 3'-hydroxylase [Vitis vinifera	0.966	0.575	0.743	1e-116
224038266		509	flavonoid 3' hydroxylase [Vitis amurensi	0.966	0.575	0.743	1e-116
326366177		510	flavonoid 3'-monooxygenase [Prunus avium	0.960	0.570	0.705	1e-116
83715794		509	flavonoid-3'-hydroxylase [Vitis vinifera	0.966	0.575	0.74	1e-115
78183418		334	flavonoid 3'-hydroxylase [Vitis vinifera	0.966	0.877	0.733	1e-115
225457231		509	PREDICTED: flavonoid 3'-monooxygenase [V	0.957	0.569	0.741	1e-114
147825152		471	hypothetical protein VITISV_007552 [Viti	0.957	0.615	0.741	1e-114

>gi\|225457235\|ref\|XP_002284165.1\| PREDICTED: flavonoid 3'-monooxygenase [Vitis vinifera]	Back alignment and taxonomy information

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/300 (74%), Positives = 251/300 (83%), Gaps = 7/300 (2%)

Query: 5   PLLILYTSLLAIVISFLFSLLRNRRRHSSHRLPPGPKPWPIVGNLPHLGPMPHQSIAGLA 64
           PL +++ + L  V+  L+  L  R    S RLPPGPKPWPIVGNLPHLGP+PH SIA LA
Sbjct: 3   PLALIFCTALFCVL--LYHFLTRR----SVRLPPGPKPWPIVGNLPHLGPVPHHSIAALA 56

Query: 65  RTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPY 124
           +T+GPLM+LR+GFVDVVVAASASVAAQFLK HD+NFSNRPPNSGAKHIAYNYQD+VF PY
Sbjct: 57  KTYGPLMHLRMGFVDVVVAASASVAAQFLKTHDANFSNRPPNSGAKHIAYNYQDLVFAPY 116

Query: 125 GPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNA 184
           GPRWRMLRKI SVHLFSGKALDD+RH+RQEE+AVL RALA AG  PVNL Q LN+C  NA
Sbjct: 117 GPRWRMLRKICSVHLFSGKALDDFRHIRQEEVAVLTRALARAGQTPVNLGQLLNVCTTNA 176

Query: 185 LGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKM 244
           LGRVMLG RVFGDG+GG DP+ADEFK MVVELMVLAGVFN+GDFVPALE LDLQGVA KM
Sbjct: 177 LGRVMLGRRVFGDGSGGEDPKADEFKEMVVELMVLAGVFNIGDFVPALEWLDLQGVAAKM 236

Query: 245 KKLHKRFDVFLSDILEERKMNGRDGGNKHTDLLGTLISLMDDANGE-EKLTETEIKALLL 303
           KKLH RFD FL  I+EE K++G  G  +H DLL TLIS+ D+A+GE  KLT+ EIKALLL
Sbjct: 237 KKLHARFDAFLGAIVEEHKISGSAGSERHVDLLSTLISVRDNADGEGGKLTDVEIKALLL 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147833535\|emb\|CAN68303.1\| hypothetical protein VITISV_041731 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|78183422\|dbj\|BAE47005.1\| flavonoid 3'-hydroxylase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|78183424\|dbj\|BAE47006.1\| flavonoid 3'-hydroxylase [Vitis vinifera] gi\|111144661\|gb\|ABH06586.1\| flavonoid 3' hydroxylase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224038266\|gb\|ACN38268.1\| flavonoid 3' hydroxylase [Vitis amurensis]	Back alignment and taxonomy information

>gi\|326366177\|gb\|ADZ54783.1\| flavonoid 3'-monooxygenase [Prunus avium]	Back alignment and taxonomy information

>gi\|83715794\|emb\|CAI54278.1\| flavonoid-3'-hydroxylase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|78183418\|dbj\|BAE47003.1\| flavonoid 3'-hydroxylase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225457231\|ref\|XP_002284151.1\| PREDICTED: flavonoid 3'-monooxygenase [Vitis vinifera] gi\|147801850\|emb\|CAN75347.1\| hypothetical protein VITISV_002956 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147825152\|emb\|CAN62275.1\| hypothetical protein VITISV_007552 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		303
TAIR\|locus:2142878		513	TT7 "TRANSPARENT TESTA 7" [Ara	0.864	0.510	0.635	4.5e-91
TAIR\|locus:2169434		507	CYP93D1 ""cytochrome P450, fam	0.867	0.518	0.353	4.2e-40
TAIR\|locus:2139099		520	CYP706A5 ""cytochrome P450, fa	0.871	0.507	0.360	6.1e-39
TAIR\|locus:2035267		510	CYP703A2 ""cytochrome P450, fa	0.874	0.519	0.348	1.6e-38
TAIR\|locus:2139114		518	CYP706A6 ""cytochrome P450, fa	0.871	0.509	0.341	1.1e-34
TAIR\|locus:2139084		516	CYP706A4 ""cytochrome P450, fa	0.861	0.505	0.361	1.7e-34
TAIR\|locus:2079251		500	CYP71B34 ""cytochrome P450, fa	0.861	0.522	0.324	7.4e-34
TAIR\|locus:504955637		490	CYP71A25 ""cytochrome P450, fa	0.838	0.518	0.312	3.2e-33
TAIR\|locus:2179959		512	CYP84A4 "CYTOCHROME P450 84A4"	0.858	0.507	0.314	3.2e-33
TAIR\|locus:2152150		519	CYP706A3 ""cytochrome P450, fa	0.867	0.506	0.328	3.2e-33

TAIR\|locus:2142878 TT7 "TRANSPARENT TESTA 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 171/269 (63%), Positives = 212/269 (78%)

Query:    37 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIH 96
             PPGP PWPI+GNLPH+G  PH++++ +  T+GP+++LRLGF             QFLKIH
Sbjct:    34 PPGPNPWPIIGNLPHMGTKPHRTLSAMVTTYGPILHLRLGFVDVVVAASKSVAEQFLKIH 93

Query:    97 DSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEM 156
             D+NF++RPPNSGAKH+AYNYQD+VF PYG RWR+LRKISSVHLFS KAL+D++HVRQEE+
Sbjct:    94 DANFASRPPNSGAKHMAYNYQDLVFAPYGHRWRLLRKISSVHLFSAKALEDFKHVRQEEV 153

Query:   157 AVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVEL 216
               L R L   GT+PVNL Q +N+CVVNALGR M+G R+FG     +D +ADEF+SMV E+
Sbjct:   154 GTLTRELVRVGTKPVNLGQLVNMCVVNALGREMIGRRLFG---ADADHKADEFRSMVTEM 210

Query:   217 MVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGNKHTDL 276
             M LAGVFN+GDFVP+L+ LDLQGVA KMK+LHKRFD FLS IL+E +MNG+D   KHTD+
Sbjct:   211 MALAGVFNIGDFVPSLDWLDLQGVAGKMKRLHKRFDAFLSSILKEHEMNGQD--QKHTDM 268

Query:   277 LGTLISLMD-DANGEE-KLTETEIKALLL 303
             L TLISL   D +G+   LT+TEIKALLL
Sbjct:   269 LSTLISLKGTDLDGDGGSLTDTEIKALLL 297

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016711 "flavonoid 3'-monooxygenase activity" evidence=IDA;TAS

GO:0019825 "oxygen binding" evidence=ISS

GO:0020037 "heme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP;RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA;TAS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR\|locus:2169434 CYP93D1 ""cytochrome P450, family 93, subfamily D, polypeptide 1"" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139099 CYP706A5 ""cytochrome P450, family 706, subfamily A, polypeptide 5"" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035267 CYP703A2 ""cytochrome P450, family 703, subfamily A, polypeptide 2"" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139114 CYP706A6 ""cytochrome P450, family 706, subfamily A, polypeptide 6"" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139084 CYP706A4 ""cytochrome P450, family 706, subfamily A, polypeptide 4"" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2079251 CYP71B34 ""cytochrome P450, family 71, subfamily B, polypeptide 34"" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504955637 CYP71A25 ""cytochrome P450, family 71, subfamily A, polypeptide 25"" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2179959 CYP84A4 "CYTOCHROME P450 84A4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2152150 CYP706A3 ""cytochrome P450, family 706, subfamily A, polypeptide 3"" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		303
PLN02687		517	PLN02687, PLN02687, flavonoid 3'-monooxygenase	1e-163
PLN00110		504	PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F	1e-95
PLN03112		514	PLN03112, PLN03112, cytochrome P450 family protein	4e-65
PLN02183		516	PLN02183, PLN02183, ferulate 5-hydroxylase	2e-48
pfam00067		461	pfam00067, p450, Cytochrome P450	1e-37
PLN02394		503	PLN02394, PLN02394, trans-cinnamate 4-monooxygenas	2e-32
PLN02966		502	PLN02966, PLN02966, cytochrome P450 83A1	1e-31
PLN03234		499	PLN03234, PLN03234, cytochrome P450 83B1; Provisio	9e-28
PLN02971		543	PLN02971, PLN02971, tryptophan N-hydroxylase	2e-23
PLN00168		519	PLN00168, PLN00168, Cytochrome P450; Provisional	3e-14
PLN02655		466	PLN02655, PLN02655, ent-kaurene oxidase	3e-10
PLN03018		534	PLN03018, PLN03018, homomethionine N-hydroxylase	3e-10
PTZ00404		482	PTZ00404, PTZ00404, cytochrome P450; Provisional	2e-05

>gnl\|CDD\|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase	Back alignment and domain information

 Score =  464 bits (1196), Expect = e-163
 Identities = 188/305 (61%), Positives = 227/305 (74%), Gaps = 7/305 (2%)

Query: 3   TLPLLILYTSLLAIVISFLFSLLRNRRRHSSHRLPPGPKPWPIVGNLPHLGPMPHQSIAG 62
            LPL +L  ++   V+ +   L R         LPPGP+ WP++GNLP LGP PH ++A 
Sbjct: 2   DLPLPLLLGTVAVSVLVWCLLLRRGGSGKHKRPLPPGPRGWPVLGNLPQLGPKPHHTMAA 61

Query: 63  LARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFR 122
           LA+T+GPL  LR GFVDVVVAASASVAAQFL+ HD+NFSNRPPNSGA+H+AYNYQD+VF 
Sbjct: 62  LAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEHMAYNYQDLVFA 121

Query: 123 PYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALA-SAGTEPVNLAQRLNLCV 181
           PYGPRWR LRKI +VHLFS KALDD+RHVR+EE+A+L R LA   GT PVNL Q +N+C 
Sbjct: 122 PYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNLGQLVNVCT 181

Query: 182 VNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVA 241
            NALGR M+G RVF    G  D +A EFK MVVELM LAGVFNVGDFVPAL  LDLQGV 
Sbjct: 182 TNALGRAMVGRRVFA---GDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLDLQGVV 238

Query: 242 RKMKKLHKRFDVFLSDILEERKMNGRDGGNKHTDLLGTLISLM--DDANGEE-KLTETEI 298
            KMK+LH+RFD  ++ I+EE K  G+ G  +H DLL TL++L     A+GE  ++T+TEI
Sbjct: 239 GKMKRLHRRFDAMMNGIIEEHKAAGQTGSEEHKDLLSTLLALKREQQADGEGGRITDTEI 298

Query: 299 KALLL 303
           KALLL
Sbjct: 299 KALLL 303

Length = 517

>gnl\|CDD\|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H); Provisional	Back alignment and domain information

>gnl\|CDD\|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|165828 PLN02183, PLN02183, ferulate 5-hydroxylase	Back alignment and domain information

>gnl\|CDD\|215689 pfam00067, p450, Cytochrome P450	Back alignment and domain information

>gnl\|CDD\|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase	Back alignment and domain information

>gnl\|CDD\|178550 PLN02966, PLN02966, cytochrome P450 83A1	Back alignment and domain information

>gnl\|CDD\|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional	Back alignment and domain information

>gnl\|CDD\|166612 PLN02971, PLN02971, tryptophan N-hydroxylase	Back alignment and domain information

>gnl\|CDD\|215086 PLN00168, PLN00168, Cytochrome P450; Provisional	Back alignment and domain information

>gnl\|CDD\|215354 PLN02655, PLN02655, ent-kaurene oxidase	Back alignment and domain information

>gnl\|CDD\|178592 PLN03018, PLN03018, homomethionine N-hydroxylase	Back alignment and domain information

>gnl\|CDD\|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		303
KOG0156		489	consensus Cytochrome P450 CYP2 subfamily [Secondar	100.0
PLN02687		517	flavonoid 3'-monooxygenase	100.0
PLN00110		504	flavonoid 3',5'-hydroxylase (F3'5'H); Provisional	100.0
PLN03112		514	cytochrome P450 family protein; Provisional	100.0
PLN03234		499	cytochrome P450 83B1; Provisional	100.0
PLN02183		516	ferulate 5-hydroxylase	100.0
PLN02971		543	tryptophan N-hydroxylase	100.0
PLN02966		502	cytochrome P450 83A1	100.0
PLN00168		519	Cytochrome P450; Provisional	100.0
PTZ00404		482	cytochrome P450; Provisional	100.0
PLN02290		516	cytokinin trans-hydroxylase	100.0
PLN02655		466	ent-kaurene oxidase	100.0
PLN02394		503	trans-cinnamate 4-monooxygenase	100.0
KOG0158		499	consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subf	100.0
PLN02500		490	cytochrome P450 90B1	99.97
PLN03018		534	homomethionine N-hydroxylase	99.97
PLN02196		463	abscisic acid 8'-hydroxylase	99.97
KOG0157		497	consensus Cytochrome P450 CYP4/CYP19/CYP26 subfami	99.97
PF00067		463	p450: Cytochrome P450 p450 superfamily signature b	99.97
PLN02774		463	brassinosteroid-6-oxidase	99.97
PLN02302		490	ent-kaurenoic acid oxidase	99.96
PLN02169		500	fatty acid (omega-1)-hydroxylase/midchain alkane h	99.96
PLN02987		472	Cytochrome P450, family 90, subfamily A	99.96
PLN03195		516	fatty acid omega-hydroxylase; Provisional	99.96
PLN03141		452	3-epi-6-deoxocathasterone 23-monooxygenase; Provis	99.95
KOG0159		519	consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27	99.95
PLN02936		489	epsilon-ring hydroxylase	99.94
PLN02738		633	carotene beta-ring hydroxylase	99.94
PLN02426		502	cytochrome P450, family 94, subfamily C protein	99.9
PLN02648		480	allene oxide synthase	99.86
KOG0684		486	consensus Cytochrome P450 [Secondary metabolites b	99.84
COG2124		411	CypX Cytochrome P450 [Secondary metabolites biosyn	99.79

>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Probab=100.00  E-value=9.2e-39  Score=262.60  Aligned_cols=263  Identities=37%  Similarity=0.647  Sum_probs=222.0

Q ss_pred             CCCCCCCCCCCCcccccCCCCCC-cchhHHHHHHhcCCcEEEEcCCeeEEEecCHHHHHHHHHHccccCCCCCC-ccccc
Q 042286           33 SHRLPPGPKPWPIVGNLPHLGPM-PHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPP-NSGAK  110 (303)
Q Consensus        33 ~~~~~pgp~~~p~~g~~~~~~~~-~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~i~~~~~~~~~~~~~-~~~~~  110 (303)
                      +.++||||+++|++||++++... +|..+.+|+++|||++.+++|..++|+|+++++++|++.+++..|++|+. .....
T Consensus        24 ~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~  103 (489)
T KOG0156|consen   24 RRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLK  103 (489)
T ss_pred             CCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHH
Confidence            38899999999999999999665 99999999999999999999999999999999999999999999999997 22446


Q ss_pred             ccccCCcceeeccCChHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHHHHHHHh-cCCCcccHHHHHHHHHHHHHHHHH
Q 042286          111 HIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALAS-AGTEPVNLAQRLNLCVVNALGRVM  189 (303)
Q Consensus       111 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~~d~~~~~~~~~~~vi~~~~  189 (303)
                      .+.+++.|++++.+|+.|+.+||+.....|+...++.....-.++++.+++.+.. ..+++||+.+.+..++.+||++++
T Consensus       104 ~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~~~~  183 (489)
T KOG0156|consen  104 YLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVICRML  183 (489)
T ss_pred             HhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHHHHH
Confidence            6665678999998899999999999878899999998888779999999999874 223789999999999999999999


Q ss_pred             hcccccCCCCCCCChhHHHHHHHHHHHHHHhcCCccccccc-cccccC-cccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 042286          190 LGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVP-ALERLD-LQGVARKMKKLHKRFDVFLSDILEERKMNGR  267 (303)
Q Consensus       190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  267 (303)
                      ||.++...+    ++....+.+.+.+..+..+.+....++| ++++++ ..+..++......++.++++++|+++++...
T Consensus       184 fG~rf~~~~----~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~~  259 (489)
T KOG0156|consen  184 FGRRFEEED----EEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKIG  259 (489)
T ss_pred             hCCccccCC----chHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999998642    2356668999999998888888888999 567663 3355667777777799999999999988641


Q ss_pred             CCCCCcCCHHHHHHhcccccCCCCCCCHHHHhhhc
Q 042286          268 DGGNKHTDLLGTLISLMDDANGEEKLTETEIKALL  302 (303)
Q Consensus       268 ~~~~~~~d~l~~ll~~~~~~~~~~~l~~~ei~~~~  302 (303)
                      .  ++..|++|.||+..++++.+ .+|+++|.+.+
T Consensus       260 ~--~~~~D~vD~lL~~~~~~~~~-~~t~~~i~~~~  291 (489)
T KOG0156|consen  260 D--EEGRDFVDALLKLMKEEKAE-GLTDDHLKALI  291 (489)
T ss_pred             c--CCCCcHHHHHHHhhcccccC-CCCHHHHHHHH
Confidence            1  22389999999987765333 39999998765

>PLN02687 flavonoid 3'-monooxygenase	Back alignment and domain information

>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional	Back alignment and domain information

>PLN03112 cytochrome P450 family protein; Provisional	Back alignment and domain information

>PLN03234 cytochrome P450 83B1; Provisional	Back alignment and domain information

>PLN02183 ferulate 5-hydroxylase	Back alignment and domain information

>PLN02971 tryptophan N-hydroxylase	Back alignment and domain information

>PLN02966 cytochrome P450 83A1	Back alignment and domain information

>PLN00168 Cytochrome P450; Provisional	Back alignment and domain information

>PTZ00404 cytochrome P450; Provisional	Back alignment and domain information

>PLN02290 cytokinin trans-hydroxylase	Back alignment and domain information

>PLN02655 ent-kaurene oxidase	Back alignment and domain information

>PLN02394 trans-cinnamate 4-monooxygenase	Back alignment and domain information

>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PLN02500 cytochrome P450 90B1	Back alignment and domain information

>PLN03018 homomethionine N-hydroxylase	Back alignment and domain information

>PLN02196 abscisic acid 8'-hydroxylase	Back alignment and domain information

>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]	Back alignment and domain information

>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry

Back alignment and domain information

>PLN02774 brassinosteroid-6-oxidase	Back alignment and domain information

>PLN02302 ent-kaurenoic acid oxidase	Back alignment and domain information

>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase	Back alignment and domain information

>PLN02987 Cytochrome P450, family 90, subfamily A	Back alignment and domain information

>PLN03195 fatty acid omega-hydroxylase; Provisional	Back alignment and domain information

>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional	Back alignment and domain information

>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PLN02936 epsilon-ring hydroxylase	Back alignment and domain information

>PLN02738 carotene beta-ring hydroxylase	Back alignment and domain information

>PLN02426 cytochrome P450, family 94, subfamily C protein	Back alignment and domain information

>PLN02648 allene oxide synthase	Back alignment and domain information

>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		303
3pm0_A		507	Structural Characterization Of The Complex Between		3e-10
4i8v_A		491	Human Cytochrome P450 1a1 In Complex With Alpha-nap		2e-07
2hi4_A		495	Crystal Structure Of Human Microsomal P450 1a2 In C		7e-07
3ruk_A		494	Human Cytochrome P450 Cyp17a1 In Complex With Abira		1e-05

>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha- Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1) Length = 507

Back alignment and structure

Iteration: 1

Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 108/271 (39%), Gaps = 29/271 (10%) Query: 37 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIH 96 PPGP WP++GN +G H S A LAR +G + +RLG Q L Sbjct: 11 PPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQ 70 Query: 97 DSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKIS-------------SVHLFSGK 143 S F++RP + + + + + F Y W++ R+ + S + G Sbjct: 71 GSAFADRPSFASFR-VVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGH 129 Query: 144 ALDDYRHVRQEEMAVLARALAS-AGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGS 202 L + R E +A+L R A A +P L + V N + V G R D Sbjct: 130 VLSEAR----ELVALLVRGSADGAFLDPRPLTV---VAVANVMSAVCFGCRYSHD----- 177 Query: 203 DPRADEFKSMVVELMVLAGVFNVGDFVPALERL--DLQGVARKMKKLHKRFDVFLSDILE 260 DP E S E G ++ D +P L+ ++ V R+ ++L++ F F+ D Sbjct: 178 DPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFL 237 Query: 261 ERKMNGRDGGNKHTDLLGTLISLMDDANGEE 291 + R G + ++S A G+ Sbjct: 238 RHCESLRPGAAPRDMMDAFILSAEKKAAGDS 268

PyMOL of 3pm0

>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With Alpha-naphthoflavone Length = 491

Back alignment and structure

>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex With Alpha-Naphthoflavone Length = 495

Back alignment and structure

>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone Length = 494

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		303
3b98_A		475	Prostaglandin I2 synthase; prostacyclin synthase,	7e-70
3n9y_A		487	Cholesterol SIDE-chain cleavage enzyme; cytochrome	2e-59
3dax_A		491	Cytochrome P450 7A1; cholesterol, cholesterol 7-al	2e-53
3k9v_A		482	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho	2e-47
3b6h_A		498	Prostacyclin synthase; enzyme-inhibitor complex, C	9e-47
3qz1_A		496	Steroid 21-hydroxylase; P450 monooxygenase, oxidor	2e-41
3swz_A		494	Steroid 17-alpha-hydroxylase/17,20 lyase; cytochro	2e-37
3pm0_A		507	Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase	3e-36
2hi4_A		495	Cytochrome P450 1A2; CYP1A2, monooxygenase, drug m	7e-36
2cib_A		455	Cytochrome P450 51; heme, heme lipid synthesis, me	2e-34
3czh_A		481	Cytochrome P450 2R1; vitamin D, vitamin S 25-hydro	1e-33
3tbg_A		479	Cytochrome P450 2D6; monooxygenase, thioridazine,	1e-32
1po5_A		476	Cytochrome P450 2B4; oxidoreductase, membrane prot	2e-28
2fdv_A		476	Cytochrome P450 2A6; CYP2A6, monooxygenase, drug m	2e-28
1r9o_A		477	Cytochrome P450 2C9; monooxygenase, drug metaboliz	4e-28
3s79_A		503	Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD	4e-28
3e6i_A		476	CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, mono	5e-27
3gw9_A		450	Sterol 14alpha-demethylase; CYP51, cytochrome P450	4e-23
1izo_A		417	P450bsbeta, cytochrome P450 152A1; heme protein, p	2e-21
3awm_A		415	Fatty acid alpha-hydroxylase; cytochrome P450, per	1e-20
2ve3_A		444	Putative cytochrome P450 120; oxidoreductase, mono	2e-20
3i3k_A		461	Lanosterol 14-alpha demethylase; cytochrome P450,	4e-20
2ij2_A		470	Cytochrome P450 BM3; monoxygenase, heme binding pr	8e-19
3dbg_A		467	Putative cytochrome P450; cytochrome P450 oxidored	1e-18
3mdm_A		456	Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, th	9e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1n97_A		389	CYP175A1; electron transport; HET: SRT HEM; 1.80A	6e-04

>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A* Length = 475	Back alignment and structure

 Score =  223 bits (570), Expect = 7e-70
 Identities = 41/291 (14%), Positives = 90/291 (30%), Gaps = 33/291 (11%)

Query: 14  LAIVISFLFSLLRNRRRHSSHRLPPGPKPW-PIVGNLPHLGPMPHQSIAGLARTHGPLMY 72
           +A   S +    R RRR      PP  K   P +G+    G    + +  +   HG +  
Sbjct: 1   MAKKTSSVLYGRRTRRR----NEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFT 56

Query: 73  LRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLR 132
           +R   + + V   ++     L        +    S A+ +     +++   + P     R
Sbjct: 57  VRAAGLYITVLLDSNCYDAVLSDVA----SLDQTSYAQVLMKRIFNMILPSHNPESEKKR 112

Query: 133 KISSVHLFSGKALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALGRVMLGF 192
                  F G +L    +  Q  +    R L +     +  ++     + N    ++   
Sbjct: 113 AE---MHFQGASLTQLSNSMQNNL----RLLMTPSEMGLKTSEWKKDGLFNLCYSLLFK- 164

Query: 193 RVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFD 252
             +    G  +  +     +  E             +P L R  +     + K++     
Sbjct: 165 TGYLTVFGAENNNSAALTQIYEEF------RRFDKLLPKLARTTVNK---EEKQIASAAR 215

Query: 253 VFLSDILEERKMNGRDGGNKHTDLLGTLISLMDDANGEEKLTETEIKALLL 303
             L   L    ++ +    +    LG+ +  + D    E +     +  +L
Sbjct: 216 EKLWKWLTPSGLDRKP---REQSWLGSYVKQLQD----EGIDAEMQRRAML 259

PyMOL of 3b98

>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A* Length = 487	Back alignment and structure

>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A* Length = 491	Back alignment and structure

>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A* Length = 482	Back alignment and structure

>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A* Length = 498	Back alignment and structure

>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus} Length = 496	Back alignment and structure

>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A* Length = 494	Back alignment and structure

>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens} Length = 507	Back alignment and structure

>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens} Length = 495	Back alignment and structure

>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A* Length = 455	Back alignment and structure

>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A* Length = 481	Back alignment and structure

>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A* Length = 479	Back alignment and structure

>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A* Length = 476	Back alignment and structure

>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A* Length = 476	Back alignment and structure

>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A* Length = 477	Back alignment and structure

>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* Length = 503	Back alignment and structure

>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A* Length = 476	Back alignment and structure

>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A* Length = 450	Back alignment and structure

>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A* Length = 417	Back alignment and structure

>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A* Length = 415	Back alignment and structure

>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A* Length = 444	Back alignment and structure

>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ... Length = 470	Back alignment and structure

>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A* Length = 467	Back alignment and structure

>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* Length = 456	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A* Length = 389	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		303
3swz_A		494	Steroid 17-alpha-hydroxylase/17,20 lyase; cytochro	100.0
3pm0_A		507	Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase	100.0
3qz1_A		496	Steroid 21-hydroxylase; P450 monooxygenase, oxidor	100.0
2hi4_A		495	Cytochrome P450 1A2; CYP1A2, monooxygenase, drug m	100.0
3e6i_A		476	CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, mono	100.0
3czh_A		481	Cytochrome P450 2R1; vitamin D, vitamin S 25-hydro	100.0
2fdv_A		476	Cytochrome P450 2A6; CYP2A6, monooxygenase, drug m	100.0
1r9o_A		477	Cytochrome P450 2C9; monooxygenase, drug metaboliz	100.0
1po5_A		476	Cytochrome P450 2B4; oxidoreductase, membrane prot	100.0
3gw9_A		450	Sterol 14alpha-demethylase; CYP51, cytochrome P450	99.98
3s79_A		503	Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD	99.97
2ij2_A		470	Cytochrome P450 BM3; monoxygenase, heme binding pr	99.97
3k9v_A		482	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho	99.97
3tbg_A		479	Cytochrome P450 2D6; monooxygenase, thioridazine,	99.97
3ld6_A		461	Lanosterol 14-alpha demethylase; cytochrome P450,	99.97
3nxu_A		485	Cytochrome P450 3A4; alpha beta protein, cytochrom	99.97
2ve3_A		444	Putative cytochrome P450 120; oxidoreductase, mono	99.96
3i3k_A		461	Lanosterol 14-alpha demethylase; cytochrome P450,	99.96
2cib_A		455	Cytochrome P450 51; heme, heme lipid synthesis, me	99.96
3dbg_A		467	Putative cytochrome P450; cytochrome P450 oxidored	99.96
3n9y_A		487	Cholesterol SIDE-chain cleavage enzyme; cytochrome	99.96
2cd8_A		436	Cytochrome P450 monooxygenase; oxidoreductase, PIK	99.95
3mdm_A		456	Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, th	99.94
1izo_A		417	P450bsbeta, cytochrome P450 152A1; heme protein, p	99.94
3awm_A		415	Fatty acid alpha-hydroxylase; cytochrome P450, per	99.93
3v8d_A		491	Cholesterol 7-alpha-monooxygenase; cytochrome, oxi	99.93
1jfb_A		404	Nitric-oxide reductase cytochrome P450 55A1; cytoc	99.93
2zbx_A		412	Cytochrome P450-SU1; beta prism, heme, iron, metal	99.92
1ued_A		406	P450 OXYC, P450 monooxygenase; cytochrome P450 van	99.92
1cpt_A		428	Cytochrome P450-TERP; oxidoreductase(oxygenase); H	99.92
3oo3_A		384	OXY protein; cytochrome P450, monooxygenase, PCD-t	99.9
3aba_A		403	Cytochrome P450; oxidoreductase, heme, monooxygena	99.9
1s1f_A		406	Putative cytochrome P450; cytochrome P450 oxidored	99.9
2wm5_A		435	CYP124, putative cytochrome P450 124; metal-bindin	99.89
2jjn_A		411	Cytochrome P450 113A1; oxidoreductase, iron, heme,	99.89
2zwu_A		415	Camphor 5-monooxygenase; P450CAM, camphor-hydroxyl	99.89
3ivy_A		433	Cytochrome P450 CYP125; cholesterol, monooxygenase	99.89
3tkt_A		450	Cytochrome P450; aromatic hydrocarbon binding of P	99.89
3abb_A		408	CYP105D6, cytochrome P450 hydroxylase; oxidoreduct	99.89
3tyw_A		417	Putative cytochrome P450; P450 monooxygenase, oxid	99.89
1odo_A		408	Putative cytochrome P450 154A1; P450 monooxygenase	99.88
2y5n_A		417	MYCG, P-450-like protein; oxidoreductase, mycinami	99.88
1n97_A		389	CYP175A1; electron transport; HET: SRT HEM; 1.80A	99.88
4fb2_A		398	P450CIN; heme, monooxygenase, cindoxin, oxidoreduc	99.88
2z36_A		413	MOXA, cytochrome P450 type compactin 3'',4''- hydr	99.88
2xkr_A		398	CYP142, putative cytochrome P450 142; oxidoreducta	99.88
3ejb_B		404	Biotin biosynthesis cytochrome P450-like enzyme; p	99.88
3dax_A		491	Cytochrome P450 7A1; cholesterol, cholesterol 7-al	99.87
1z8o_A		404	6-deoxyerythronolide B hydroxylase; heme, CYP, ery	99.87
3a4g_A		411	Vitamin D hydroxylase; cytochrome P450, hemoprotei	99.87
1q5d_A		419	P450 epoxidase; cytochrome P450, epothilone, oxydo	99.87
2dkk_A		411	Cytochrome P450; CYP158A1, INHI oxidoreductase; HE	99.86
1gwi_A		411	CYP154C1, cytochrome P450 154C1; oxidoreductase, m	99.86
3nc3_A		441	Cytochrome P450 CYPX; cytochrome P450 oxidase, HAE	99.86
2z3t_A		425	Cytochrome P450; monoxygenase, oxydoreductase, hem	99.86
3lxh_A		421	Cytochrome P450; heme, iron, metal-binding, monoox	99.86
3r9b_A		418	Cytochrome P450 164A2; monooxygenase, oxidoreducta	99.85
3b6h_A		498	Prostacyclin synthase; enzyme-inhibitor complex, C	99.85
2xbk_A		404	PIMD protein; epoxidation, oxidoreductase; HET: HE	99.85
2uuq_A		414	CYP130, cytochrome P450 130; iron, heme, monooxyge	99.85
3buj_A		397	CALO2; heme, iron, metal-binding, monooxygenase, o	99.84
3oft_A		396	Cytochrome P450, CYP101C1; oxidoreductase; HET: HE	99.84
3rwl_A		426	Cytochrome P450 alkane hydroxylase 1 CYP153A7; P45	99.83
3b98_A		475	Prostaglandin I2 synthase; prostacyclin synthase,	99.83
3mgx_A		415	Putative P450 monooxygenase; cytochrome P450 oxida	99.82
3dsk_A		495	Cytochrome P450 74A, chloroplast; P450 fold, fatty	99.82
1lfk_A		398	OXYB, P450 monooxygenase; oxidative phenol couplin	99.82
3dan_A		473	Cytochrome P450 74A2; AOS heme cytochrome P450 str	99.81
1n40_A		396	P450 MT2, cytochrome P450 121; heme binding, oxyge	99.8
2wiy_A		394	XPLA-heme, cytochrome P450-like protein XPLA; CYT-	99.79
3p3o_A		416	Cytochrome P450; monooxygenase, oxidoreductase; HE	99.79
3b4x_A		367	367AA long hypothetical cytochrome P450; HEM prote	99.77
1io7_A		368	Cytochrome P450 CYP119; thermophilic, cytochromo P	99.74
2rfb_A		343	Cytochrome P450; heme, iron, metal-binding, monoox	99.73
4dxy_A		417	Cytochrome P450, CYP101D2; cytochrome P450 mutant,	99.7
4dnj_A		412	Putative cytochrome P450; oxidoreductase; HET: HEM	99.63
2yjn_B		381	Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase;	98.44

>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*	Back alignment and structure

Probab=100.00  E-value=1.8e-34  Score=243.71  Aligned_cols=263  Identities=21%  Similarity=0.326  Sum_probs=201.2

Q ss_pred             CCCCCCCCCCCCCCcccccCCCC--CCcchhHHHHHHhcCCcEEEEcCCeeEEEecCHHHHHHHHHHccccCCCCCCccc
Q 042286           31 HSSHRLPPGPKPWPIVGNLPHLG--PMPHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSG  108 (303)
Q Consensus        31 ~~~~~~~pgp~~~p~~g~~~~~~--~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~i~~~~~~~~~~~~~~~~  108 (303)
                      ++..++||||+++|++||++++.  +.++..+.+|+++||+||++++|+.++|+|+||+++++++.++...|.+++....
T Consensus         4 ~~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~   83 (494)
T 3swz_A            4 KTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMAT   83 (494)
T ss_dssp             --------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHH
T ss_pred             CCCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHH
Confidence            34567899999999999999883  4678899999999999999999999999999999999999998888988876554


Q ss_pred             ccccccCCcceeeccCChHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q 042286          109 AKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSG--KALDDYRHVRQEEMAVLARALASAGTEPVNLAQRLNLCVVNALG  186 (303)
Q Consensus       109 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~--~~l~~~~~~~~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~  186 (303)
                      .......+.|++++++|+.|+.+|++++ +.|+.  ..+..+.+.+.+++..+++.+....|+++|+.+.+.++++|+|+
T Consensus        84 ~~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~t~dvi~  162 (494)
T 3swz_A           84 LDIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVIS  162 (494)
T ss_dssp             HHHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHTTTEEECCHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHH
Confidence            4444444567888877999999999998 99874  45677899999999999999986567789999999999999999


Q ss_pred             HHHhcccccCCCCCCCChhHHHHHHHHHHHHHHhcCCccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 042286          187 RVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNG  266 (303)
Q Consensus       187 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  266 (303)
                      .++||.+++..     ++....+......+........+...+|++++++. ...++..+..+.+.+++.++++++++..
T Consensus       163 ~~~fG~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~  236 (494)
T 3swz_A          163 LICFNTSYKNG-----DPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKF  236 (494)
T ss_dssp             HHHHSCCCCTT-----CTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSCC-SHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHcCCcCCCC-----CHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999988652     23444444544554444444456677898887732 3456677788889999999999888765


Q ss_pred             CCCCCCcCCHHHHHHhcccccC--------CCCCCCHHHHhhhc
Q 042286          267 RDGGNKHTDLLGTLISLMDDAN--------GEEKLTETEIKALL  302 (303)
Q Consensus       267 ~~~~~~~~d~l~~ll~~~~~~~--------~~~~l~~~ei~~~~  302 (303)
                      +.  ....|+++.|+++..+.+        ....+++++|.+++
T Consensus       237 ~~--~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~  278 (494)
T 3swz_A          237 RS--DSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTI  278 (494)
T ss_dssp             CT--TCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHH
T ss_pred             cc--cchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHH
Confidence            43  346799999998653210        11258999987654

PyMOL of 3swz

>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}	Back alignment and structure

>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}	Back alignment and structure

>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}	Back alignment and structure

>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*	Back alignment and structure

>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*	Back alignment and structure

>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*	Back alignment and structure

>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*	Back alignment and structure

>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*	Back alignment and structure

>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*	Back alignment and structure

>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*	Back alignment and structure

>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...	Back alignment and structure

>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*	Back alignment and structure

>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*	Back alignment and structure

>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*	Back alignment and structure

>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*	Back alignment and structure

>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*	Back alignment and structure

>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*	Back alignment and structure

>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*	Back alignment and structure

>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*	Back alignment and structure

>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*	Back alignment and structure

>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*	Back alignment and structure

>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*	Back alignment and structure

>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*	Back alignment and structure

>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*	Back alignment and structure

>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*	Back alignment and structure

>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*	Back alignment and structure

>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1	Back alignment and structure

>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1	Back alignment and structure

>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*	Back alignment and structure

>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*	Back alignment and structure

>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*	Back alignment and structure

>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*	Back alignment and structure

>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*	Back alignment and structure

>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...	Back alignment and structure

>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*	Back alignment and structure

>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}	Back alignment and structure

>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}	Back alignment and structure

>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*	Back alignment and structure

>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1	Back alignment and structure

>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*	Back alignment and structure

>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*	Back alignment and structure

>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*	Back alignment and structure

>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}	Back alignment and structure

>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}	Back alignment and structure

>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*	Back alignment and structure

>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*	Back alignment and structure

>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*	Back alignment and structure

>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*	Back alignment and structure

>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*	Back alignment and structure

>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*	Back alignment and structure

>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1	Back alignment and structure

>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*	Back alignment and structure

>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*	Back alignment and structure

>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*	Back alignment and structure

>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*	Back alignment and structure

>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*	Back alignment and structure

>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*	Back alignment and structure

>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*	Back alignment and structure

>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}	Back alignment and structure

>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*	Back alignment and structure

>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}	Back alignment and structure

>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*	Back alignment and structure

>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}	Back alignment and structure

>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*	Back alignment and structure

>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*	Back alignment and structure

>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*	Back alignment and structure

>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*	Back alignment and structure

>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*	Back alignment and structure

>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*	Back alignment and structure

>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*	Back alignment and structure

>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*	Back alignment and structure

>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*	Back alignment and structure

>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*	Back alignment and structure

>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*	Back alignment and structure

>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		303
d1po5a_		465	a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabb	3e-37
d3czha1		463	a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2	2e-33
d1r9oa_		467	a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Huma	4e-32
d2ij2a1		453	a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus	2e-25
d1tqna_		472	a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Huma	1e-24
d2ciba1		445	a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-stero	1e-22
d1izoa_		411	a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Ba	1e-13
d1n97a_		385	a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [Tax	2e-12
d1odoa_		401	a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyce	8e-09
d1ueda_		403	a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatops	3e-05

>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 465	Back information, alignment and structure


class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Mammalian cytochrome p450 2b4
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  135 bits (340), Expect = 3e-37
 Identities = 53/272 (19%), Positives = 92/272 (33%), Gaps = 10/272 (3%)

Query: 35  RLPPGPKPWPIVGNLPHLGPM-PHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFL 93
           +LPPGP P P++GNL  +      +S   L   +G +  + LG   VVV        + L
Sbjct: 2   KLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREAL 61

Query: 94  KIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQ 153
                 FS R   +    I   Y   V    G RWR LR+ S   +            R 
Sbjct: 62  VDQAEAFSGRGKIAVVDPIFQGYG--VIFANGERWRALRRFSLATMRDFGMGKRSVEERI 119

Query: 154 EEMA-VLARALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSM 212
           +E A  L   L  +    ++     +    N +  ++ G R         DP       +
Sbjct: 120 QEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRF-----DYKDPVFLRLLDL 174

Query: 213 VVELMVLAGVFNVGDFVPALERLD-LQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGN 271
             +   L   F+   F      L    G  R++ +  +  + F+   +E+ +        
Sbjct: 175 FFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNP 234

Query: 272 KHTDLLGTLISLMDDANGEEKLTETEIKALLL 303
           +    +  L    D ++   +     +   +L
Sbjct: 235 RDFIDVYLLRMEKDKSDPSSEFHHQNLILTVL 266

PyMOL of d1po5a_

>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 463	Back information, alignment and structure

>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]} Length = 467	Back information, alignment and structure

>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]} Length = 453	Back information, alignment and structure

>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]} Length = 472	Back information, alignment and structure

>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 445	Back information, alignment and structure

>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]} Length = 411	Back information, alignment and structure

>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]} Length = 385	Back information, alignment and structure

>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} Length = 401	Back information, alignment and structure

>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]} Length = 403	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		303
d2ij2a1		453	Cytochrome P450 bm-3 {Bacillus megaterium [TaxId:	100.0
d2ciba1		445	Cytochrome p450 14 alpha-sterol demethylase (cyp51	99.97
d1tqna_		472	Mammalian cytochrome P450 3a4 {Human (Homo sapiens	99.96
d1r9oa_		467	Mammalian cytochrome p450 2c9 {Human (Homo sapiens	99.96
d3czha1		463	Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapie	99.95
d1po5a_		465	Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus	99.94
d1izoa_		411	Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis	99.9
d1n97a_		385	Cyp175a1 {Thermus thermophilus [TaxId: 274]}	99.83
d1ueda_		403	p450 monoxygenase OxyC {Amycolatopsis orientalis [	99.81
d1odoa_		401	Cyp154a1 monooxygenase {Streptomyces coelicolor [T	99.8
d1z8oa1		402	Cytochrome P450-ERYF {Saccharopolyspora erythraea	99.75
d1jfba_		399	Cytochrome P450-NOR, nitric reductase {Fungus (Fus	99.75
d1gwia_		403	Cyp154c1 monooxygenase {Streptomyces coelicolor [T	99.73
d1re9a_		404	Cytochrome P450-CAM {Pseudomonas putida [TaxId: 30	99.71
d1q5da_		401	Cytochrome P450epok {Sorangium cellulosum [TaxId:	99.67
d1cpta_		428	Cytochrome P450-TERP {Pseudomonas sp. [TaxId: 306]	99.61
d1s1fa_		399	Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]}	99.6
d1lfka_		394	p450 monoxygenase OxyB {Amycolatopsis orientalis [	99.58
d1n40a_		395	Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tub	99.5
d1io7a_		366	Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2	99.2
d1ue8a_		367	Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 11195	99.03

>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]}	Back information, alignment and structure

class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Cytochrome P450 bm-3
species: Bacillus megaterium [TaxId: 1404]

Probab=100.00  E-value=4.1e-33  Score=231.12  Aligned_cols=252  Identities=16%  Similarity=0.202  Sum_probs=190.4

Q ss_pred             CCCCCCCCCcccccCCC-CCCcchhHHHHHHhcCCcEEEEcCCeeEEEecCHHHHHHHHHHccccCCCCCCccccccccc
Q 042286           36 LPPGPKPWPIVGNLPHL-GPMPHQSIAGLARTHGPLMYLRLGFVDVVVAASASVAAQFLKIHDSNFSNRPPNSGAKHIAY  114 (303)
Q Consensus        36 ~~pgp~~~p~~g~~~~~-~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~i~~~~~~~~~~~~~~~~~~~~~~  114 (303)
                      .+|||+++|++|+++.+ .++++..+.+++++|||||++++++.++|+|+||+++++++.++...+..+.......... 
T Consensus         2 ~iPGP~~~p~lG~l~~l~~~~~~~~~~~~~~kyG~if~~~~~~~~~vvl~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~-   80 (453)
T d2ij2a1           2 EMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFA-   80 (453)
T ss_dssp             CCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTTTEEECCCHHHHHHHHHH-
T ss_pred             CCccCCCcchhhCHHHhCCCCHHHHHHHHHHHhCCEEEEEeCCceEEEECCHHHHHHHHhcCCcccccccHhHHHHHhc-
Confidence            46999999999999887 6678999999999999999999999999999999999999976655444433222222222 


Q ss_pred             CCcceeec-cCChHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHHHHHHH-hcCCCcccHHHHHHHHHHHHHHHHHhcc
Q 042286          115 NYQDIVFR-PYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLARALA-SAGTEPVNLAQRLNLCVVNALGRVMLGF  192 (303)
Q Consensus       115 ~~~~~~~~-~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~l~~~l~-~~~~~~~d~~~~~~~~~~~vi~~~~fG~  192 (303)
                       |.|++.+ .+|+.|+++|++++ ++|++++++.+.+.+.++++.+++.|. ..+++++|+.+++.++++|+++.++||.
T Consensus        81 -g~~~~~~~~~g~~wk~~Rk~l~-~~fs~~~l~~~~~~i~~~~~~li~~l~~~~~~~~idl~~~~~~~~~~~i~~~~fG~  158 (453)
T d2ij2a1          81 -GDGLFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNY  158 (453)
T ss_dssp             -TTSGGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHHSC
T ss_pred             -CCcEEecCCChHHHHHHHHHHH-HHhhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCccchHHHHHHHhhhcchhccccc
Confidence             2455442 35999999999998 999999999999999999999999997 3456789999999999999999999999


Q ss_pred             cccCCCCCCCChhHHHHHHHHHHHHHHhcCCccccccccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 042286          193 RVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGNK  272 (303)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  272 (303)
                      +++....+...+....+.+.+....   ..  +....|+...  .....++..++.+.+.+++.++|+++++..    +.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~----~~  227 (453)
T d2ij2a1         159 RFNSFYRDQPHPFITSMVRALDEAM---NK--LQRANPDDPA--YDENKRQFQEDIKVMNDLVDKIIADRKASG----EQ  227 (453)
T ss_dssp             CCCGGGCSSCCHHHHHHHHHHHHHH---HT--C---CTTSGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred             ccchhhhccchHHHHhhhhccchhh---hh--hhhccccccc--chhhHHHHHHHHHHHHHHHHHHHhhhcccc----cc
Confidence            9876543222223333333333332   21  1112222221  234456777888899999999999998874    34


Q ss_pred             cCCHHHHHHhcccccCCCCCCCHHHHhhhc
Q 042286          273 HTDLLGTLISLMDDANGEEKLTETEIKALL  302 (303)
Q Consensus       273 ~~d~l~~ll~~~~~~~~~~~l~~~ei~~~~  302 (303)
                      ..|+++.++++.+.+.+. .++++||.+++
T Consensus       228 ~~d~l~~ll~~~~~~~~~-~ls~~ei~~~~  256 (453)
T d2ij2a1         228 SDDLLTHMLNGKDPETGE-PLDDENIRYQI  256 (453)
T ss_dssp             CSSHHHHHHHCCCTTTCC-CCCHHHHHHHH
T ss_pred             ccchhhhhhhhcccccCc-chhhhHHHhhh
Confidence            789999999887765454 79999998765

PyMOL of d2ij2a1

>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]}	Back information, alignment and structure

>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]}	Back information, alignment and structure

>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]}	Back information, alignment and structure

>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp. [TaxId: 306]}	Back information, alignment and structure

>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure