Citrus Sinensis ID: 042319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MEMMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHISGAAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQEDCFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHGTACDDEFGGIFYDGIADFPFICSSNGGSIDFQEREHFI
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEcccccccccccccccccccccccccccccHHccccccccccccccccccccccEEEccccccEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccEEccccccEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccEEEEccccccccEEEEcccccccEEEcccccccccccccccccccccccccccEEccEEEEcccccEEEEEEccccccccccccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHccccccccccEEcccEEcccccEEEEEEEEEccccEEEEcccccHHHHHHHHHHHHHHHccccEEEcccccHccHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHcHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEcccccccccHHHccccc
Coil and Loop (DISEMBL)
MEMMMVKQEETQGRRRALVVVDGevqsarcvkrrrrdpavtslgcddnqsqqqqndhisgaaattvkrssrfrgvsrhrwtgRYEAHLWDklswnvtqkkkgkqvylgAYDEEEAAARAYDLAALKywgtstftnfpisdYEKEIEFMQTVTKEEYLASLRRkssgfsrgvskyrgvarhhhngrweARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRginavtnfdLSSYIrwlkpgtnniltaghelptltepqsvlpsptdfspreepkyllfqsnpitadflnspqkqedcfqsnvsvnsgnnnnkpstpsALGLLLRSSIFKELVEknsnvsedesegdekknqhgtacddefggifydgiadfpficssnggsidfqerehfi
Flexible Loop (DISEMBL)
memmmvkqeetqgrrralvvvdgevqsarcvkrrrrdpavtslgcddnqsqqqqndhisgaaattvkrssrfrgvsrhrwtgryeahlwdklswnvtqkkkGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLAslrrkssgfsrgvskyrgvarhhhngrwearigrvFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQEDCFQSNVSvnsgnnnnkpSTPSALGLLLRSSIFKELVEKnsnvsedesegdekknqhgtACDDEFGGIFYDGIADFPFICSSNGGSIDFQEREHFI
Low Complexity Region (SEG)
MEMMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCddnqsqqqqndHISGAAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGaydeeeaaaraydlaalKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQEDCFQsnvsvnsgnnnnKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHGTACDDEFGGIFYDGIADFPFICSSNGGSIDFQEREHFI
Disordered region (IsUnstruct)
*****************LVVVD*************************************************FRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRR***GFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGTNNILTAGHE*************************LLF*******************************************LL***I***************************ACDDEFGGIFYDGIADFPFICSSN*************
Disordered Region (DISOPRED)
***************************************************************************SRHRWTGRYEAHLWDKLSWNV***KKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSS**SRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY**********************************************************************************************************************************FYDGIADFPFICSSNGGSIDFQEREH*I
Disordered Region (DISEMBL)
***************RALVVVDGEVQSARCVKRRRRDPAVTSL******************AATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGTNNILTAGHELPTLTEP************REEPKYLLFQSNPITADFLNSPQKQEDCFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVE*******************GTACDDEFGGIFYDGIADFPFICSSNGGSIDFQEREHFI
Disordered Region (DISPRO)
******K***TQGRRRALVVVDGEVQSARCVKRRRRDPA*****************************SSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPG***************************************************************************PSALGLLLRSSIFKELVEKN********************CDDEFGGIFYDGIADFPFICSSNGGSIDFQER***I
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHISGAAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQEDCFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHGTACDDEFGGIFYDGIADFPFICSSNGGSIDFQEREHFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q6X5Y6	430	Ethylene-responsive trans	yes	no	0.541	0.495	0.701	6e-76
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.526	0.370	0.617	9e-71
Q8LSN2	579	AP2-like ethylene-respons	N/A	no	0.430	0.291	0.721	7e-70
Q8L3U3	579	AP2-like ethylene-respons	N/A	no	0.430	0.291	0.715	2e-69
Q6PQQ4	584	AP2-like ethylene-respons	no	no	0.409	0.275	0.715	3e-69
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.409	0.283	0.704	5e-69
Q94AN4	345	AP2-like ethylene-respons	no	no	0.470	0.536	0.747	1e-67
Q5YGP8	574	AP2-like ethylene-respons	no	no	0.424	0.290	0.674	1e-67
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.407	0.385	0.692	3e-67
Q38914	555	AP2-like ethylene-respons	no	no	0.409	0.290	0.692	9e-67

>sp|Q6X5Y6|WRI1_ARATH Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1

 Score =  285 bits (728), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/221 (70%), Positives = 168/221 (76%), Gaps = 8/221 (3%)

Query: 62  AATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYD 121
           +  + +RSS +RGV+RHRWTGR+EAHLWDK SWN  Q KKGKQVYLGAYD EEAAA  YD
Sbjct: 56  SPASTRRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGKQVYLGAYDSEEAAAHTYD 115

Query: 122 LAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHH 181
           LAALKYWG  T  NFP   Y KE+E MQ VTKEEYLASLRR+SSGFSRGVSKYRGVARHH
Sbjct: 116 LAALKYWGPDTILNFPAETYTKELEEMQRVTKEEYLASLRRQSSGFSRGVSKYRGVARHH 175

Query: 182 HNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLK- 240
           HNGRWEARIGRVFGNKYLYLGTY+TQEEAA AYD+AAIEYRG NAVTNFD+S+YI  LK 
Sbjct: 176 HNGRWEARIGRVFGNKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIDRLKK 235

Query: 241 ----PGTNNILTAGHELPTLTEP-QSVLPSPTDFSPREEPK 276
               P   N   A H+   L E  Q V        PREE K
Sbjct: 236 KGVFPFPVN--QANHQEGILVEAKQEVETREAKEEPREEVK 274

May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional activator involved in the activation of a subset of sugar-responsive genes and the control of carbon flow from sucrose import to oil accumulation in developing seeds. Binds to the GCC-box pathogenesis-related promoter element. Promotes sugar uptake and seed oil accumulation by glycolysis. Required for embryo development, seed germination and, indirectly, for seedling establishment. Negative regulator of the ABA-mediated germination inhibition.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  267 bits (683), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 159/209 (76%), Gaps = 2/209 (0%)

Query: 67  KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALK 126
           +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG YD+E+ AARAYDLAALK
Sbjct: 199 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALK 258

Query: 127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
           YWG +T TNFPIS+YE E+E M+ +T++E++ASLRRKSSGFSRG S YRGV RHH +GRW
Sbjct: 259 YWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRW 318

Query: 187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGTNNI 246
           +ARIGRV GNK LYLGT+STQEEAA AYDIAAI++RG+NAVTNFD+S Y   +K   +  
Sbjct: 319 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYD--VKSIASCN 376

Query: 247 LTAGHELPTLTEPQSVLPSPTDFSPREEP 275
           L  G  +P  +   +      D SP + P
Sbjct: 377 LPVGGLMPKPSPATAAADKTVDLSPSDSP 405

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LSN2|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1

 Score =  264 bits (675), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 122/169 (72%), Positives = 145/169 (85%)

Query: 67  KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALK 126
           +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG YD+EE AARAYDLAALK
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
           YWGT+T TNFP+S+YEKEIE M+ +T++EY+ASLRRKSSGFSRG S YRGV RHH +GRW
Sbjct: 266 YWGTTTTTNFPMSEYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
           +ARIGRV GNK LYLGT+ TQEEAA AYDIAAI++RG+ AVTNFD++ Y
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q8L3U3|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 145/169 (85%)

Query: 67  KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALK 126
           +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG YD+EE AARAYDLAALK
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
           YWGT+T TNFP+S+YEKE+E M+ +T++EY+ASLRRKSSGFSRG S YRGV RHH +GRW
Sbjct: 266 YWGTTTTTNFPMSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
           +ARIGRV GNK LYLGT+ TQEEAA AYDIAAI++RG+ AVTNFD++ Y
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q6PQQ4|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2

 Score =  262 bits (670), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 146/169 (86%)

Query: 67  KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALK 126
           +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG YD+EE AARAYDLAALK
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
           YWGT+T TNFP+S+YEKE+E M+ +T++EY+ASLRRKSSGFSRG S YRGV RHH +GRW
Sbjct: 266 YWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
           +ARIGRV GNK LYLGT+ TQEEAA AYDIAAI++RG++AVTNFD++ Y
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  261 bits (668), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 146/169 (86%)

Query: 67  KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALK 126
           +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG YD+EE AARAYDLAALK
Sbjct: 186 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALK 245

Query: 127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
           YWG ST TNFPI++YEKE+E M+ +T++E++AS+RRKSSGFSRG S YRGV RHH +GRW
Sbjct: 246 YWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRW 305

Query: 187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
           +ARIGRV GNK LYLGT+ST+EEAA AYDIAAI++RG+NAVTNF+++ Y
Sbjct: 306 QARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 354

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/190 (74%), Positives = 163/190 (85%), Gaps = 5/190 (2%)

Query: 67  KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALK 126
           +RSS  RGV+RHRWTGRYEAHLWDK SWN TQ KKG+QVYLGAYDEE+AAARAYDLAALK
Sbjct: 54  QRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALK 113

Query: 127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
           YWG  T  NFP+ +YE++I+ M++ +KEEY+ SLRRKSSGFSRGVSKYRGVA+HHHNGRW
Sbjct: 114 YWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRW 173

Query: 187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKP----- 241
           EARIGRVFGNKYLYLGTY+TQEEAA AYDIAAIEYRG+NAVTNFD+S Y++   P     
Sbjct: 174 EARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDISRYLKLPVPENPID 233

Query: 242 GTNNILTAGH 251
             NN+L + H
Sbjct: 234 TANNLLESPH 243

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/175 (67%), Positives = 148/175 (84%)

Query: 61  AAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAY 120
           A  T  +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG YD+E+ AAR+Y
Sbjct: 171 ALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSY 230

Query: 121 DLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARH 180
           DLAALKYWG ST TNFPI++YEKE+E M+ +T++E++A++RRKSSGFSRG S YRGV RH
Sbjct: 231 DLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRH 290

Query: 181 HHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
           H +GRW+ARIGRV GNK LYLGT+ST+EEAA AYDIAAI++RG+NAVTNF+++ Y
Sbjct: 291 HQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 345

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/169 (69%), Positives = 142/169 (84%)

Query: 67  KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALK 126
           +R+S++RGV+RHRWTGRYEAHLWD       Q ++G+QVYLG YDEEE AARAYDLAALK
Sbjct: 219 QRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALK 278

Query: 127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
           YWG +T  NFP+S+YEKEIE +  + ++E++A LRR SSGFSRG S YRGV RHH +GRW
Sbjct: 279 YWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRW 338

Query: 187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
           +ARIGRV GNK LYLGT+STQEEAA AYDIAAI++RG+NAVTNFD++ Y
Sbjct: 339 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2

 Score =  254 bits (649), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 117/169 (69%), Positives = 139/169 (82%)

Query: 67  KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALK 126
           +R+S++RGV+RHRWTGRYEAHLWD         +KG+QVYLG YD EE AARAYDLAALK
Sbjct: 279 QRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALK 338

Query: 127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
           YWG ST TNF   +Y+KEIE M+ +T++EY+A LRRKSSGFSRG S YRGV RHH +GRW
Sbjct: 339 YWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRW 398

Query: 187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
           +ARIGRV GNK LYLGT+ TQEEAA AYD+AAI++RG NAVTNFD++ Y
Sbjct: 399 QARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRY 447

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
224140943	386	AP2 domain-containing transcription fact	0.964	0.981	0.735	1e-158
147866285	404	hypothetical protein VITISV_042445 [Viti	0.959	0.933	0.705	1e-150
359488972	402	PREDICTED: AP2-like ethylene-responsive	0.954	0.932	0.704	1e-148
255552862	372	conserved hypothetical protein [Ricinus	0.931	0.983	0.714	1e-143
356529949	389	PREDICTED: ethylene-responsive transcrip	0.972	0.982	0.632	1e-130
356567024	389	PREDICTED: ethylene-responsive transcrip	0.964	0.974	0.625	1e-127
357501657	392	AP2-like ethylene-responsive transcripti	0.956	0.959	0.624	1e-122
225424916	336	PREDICTED: ethylene-responsive transcrip	0.839	0.982	0.649	1e-121
356570045	406	PREDICTED: AP2-like ethylene-responsive	0.938	0.908	0.610	1e-114
224111258	418	AP2 domain-containing transcription fact	0.941	0.885	0.589	1e-114

>gi|224140943|ref|XP_002323836.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222866838|gb|EEF03969.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/390 (73%), Positives = 320/390 (82%), Gaps = 11/390 (2%)

Query: 3   MMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHISG-- 60
           MMM+K EE  GRRR   + D E Q ARCVKRRRRDPA+ +LG DDNQSQQQ     +   
Sbjct: 1   MMMIKNEENPGRRRG-CIADSEAQVARCVKRRRRDPAIVALGSDDNQSQQQMPQKQTDQT 59

Query: 61  AAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAY 120
           +AATTVKRSSRFRGVSRHRWTGR+EAHLWDKLSWNVTQKKKGKQ   GAYDEEE+AARAY
Sbjct: 60  SAATTVKRSSRFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQ---GAYDEEESAARAY 116

Query: 121 DLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARH 180
           DLAALKYWGTSTFTNFPISDYEKEIE MQTVTKEEYLASLRRKSSGFSRGVSKYRGVARH
Sbjct: 117 DLAALKYWGTSTFTNFPISDYEKEIEIMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARH 176

Query: 181 HHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLK 240
           HHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS+YIRW+K
Sbjct: 177 HHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWIK 236

Query: 241 PGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQEDCF 300
           PG      A +EL T+T+PQ+       ++PREE K  LF  N  TAD+LNSP K  D F
Sbjct: 237 PGV-AAQAAANELQTVTDPQTAATLTDTYTPREETKPSLFLPNQFTADYLNSPPKL-DAF 294

Query: 301 QSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHGTACDD 360
           Q+N+ V+S   +NK S+P+AL LLLRSS+F+ELVEKNSNV E+E++G+E KNQ     DD
Sbjct: 295 QNNIFVDS---SNKTSSPTALSLLLRSSVFRELVEKNSNVCEEETDGNEIKNQPMAGSDD 351

Query: 361 EFGGIFYDGIADFPFICSSNGGSIDFQERE 390
           E+GGIFYDGI D PF+ SSN  S+  +ERE
Sbjct: 352 EYGGIFYDGIGDIPFVYSSNKYSLGLEERE 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866285|emb|CAN79925.1| hypothetical protein VITISV_042445 [Vitis vinifera]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/391 (70%), Positives = 305/391 (78%), Gaps = 14/391 (3%)

Query: 1   MEMMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHIS- 59
           MEMM VK EE  GRRR + V D E Q  RCVKRRRRDPA+ +LGCDD   QQQ  +    
Sbjct: 1   MEMMRVKSEENLGRRR-MCVADAEAQGTRCVKRRRRDPAIVTLGCDDQSQQQQLPNQQPD 59

Query: 60  -GAAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAAR 118
             +AATTVKRSSRFRGVSRHRWTGR+EAHLWDK SWNVTQKKKGKQ   GAYDEEE+AAR
Sbjct: 60  QASAATTVKRSSRFRGVSRHRWTGRFEAHLWDKFSWNVTQKKKGKQ---GAYDEEESAAR 116

Query: 119 AYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVA 178
           AYDLAALKYWG STFTNFP+SDYEKEIE MQ+VTKEEYLA LRRKSSGFSRGVSKYRGVA
Sbjct: 117 AYDLAALKYWGASTFTNFPVSDYEKEIEIMQSVTKEEYLACLRRKSSGFSRGVSKYRGVA 176

Query: 179 RHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRW 238
           RHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS+YIRW
Sbjct: 177 RHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRW 236

Query: 239 LKPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQED 298
           L P  NN +   HE    TEPQ++  S  +F   EE + L F SN  T D LN P KQE 
Sbjct: 237 LNPAANNPVVP-HESRANTEPQALASS--NFVLSEESEPLFFHSNSFTMDDLNPPHKQE- 292

Query: 299 CFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHGTAC 358
            FQ+ + +      +K S+P+ALGLLLRSSIF+ELVEKNSN  EDE++ ++ KNQ     
Sbjct: 293 VFQTKIPIEPC---SKSSSPTALGLLLRSSIFRELVEKNSNAPEDETDAEDTKNQQQVGS 349

Query: 359 DDEFGGIFYDGIADFPFICSSNGGSIDFQER 389
           DDE+ GIFYDGI D PF+C SNG   + QER
Sbjct: 350 DDEY-GIFYDGIGDIPFVCPSNGDRNELQER 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488972|ref|XP_003633849.1| PREDICTED: AP2-like ethylene-responsive transcription factor AIL5-like [Vitis vinifera]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/389 (70%), Positives = 303/389 (77%), Gaps = 14/389 (3%)

Query: 3   MMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHIS--G 60
           MM VK EE  GRRR + V D E Q  RCVKRRRRDPA+ +LGCDD   QQQ  +      
Sbjct: 1   MMRVKSEENLGRRR-MCVADAEAQGTRCVKRRRRDPAIVTLGCDDQSQQQQLPNQQPDQA 59

Query: 61  AAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAY 120
           +AATTVKRSSRFRGVSRHRWTGR+EAHLWDK SWNVTQKKKGKQ   GAYDEEE+AARAY
Sbjct: 60  SAATTVKRSSRFRGVSRHRWTGRFEAHLWDKFSWNVTQKKKGKQ---GAYDEEESAARAY 116

Query: 121 DLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARH 180
           DLAALKYWG STFTNFP+SDYEKEIE MQ+VTKEEYLA LRRKSSGFSRGVSKYRGVARH
Sbjct: 117 DLAALKYWGASTFTNFPVSDYEKEIEIMQSVTKEEYLACLRRKSSGFSRGVSKYRGVARH 176

Query: 181 HHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLK 240
           HHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS+YIRWL 
Sbjct: 177 HHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLN 236

Query: 241 PGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQEDCF 300
           P  NN +   HE    TEPQ++  S  +F   EE + L F SN  T D LN P KQE  F
Sbjct: 237 PAANNPVVP-HESRANTEPQALASS--NFVLSEESEPLFFHSNSFTMDDLNPPHKQE-VF 292

Query: 301 QSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHGTACDD 360
           Q+ + +      +K S+P+ALGLLLRSSIF+ELVEKNSN  EDE++ ++ KNQ     DD
Sbjct: 293 QTKIPIEPC---SKSSSPTALGLLLRSSIFRELVEKNSNAPEDETDAEDTKNQQQVGSDD 349

Query: 361 EFGGIFYDGIADFPFICSSNGGSIDFQER 389
           E+ GIFYDGI D PF+C SNG   + QER
Sbjct: 350 EY-GIFYDGIGDIPFVCPSNGDRNELQER 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552862|ref|XP_002517474.1| conserved hypothetical protein [Ricinus communis] gi|223543485|gb|EEF45016.1| conserved hypothetical protein [Ricinus communis]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/382 (71%), Positives = 303/382 (79%), Gaps = 16/382 (4%)

Query: 1   MEMMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHISG 60
           MEMMMVK EE  GRRRA  V + E   ARCVKRRRRD AV ++G DD+QS QQQ      
Sbjct: 1   MEMMMVKNEEISGRRRA-SVTESEAYVARCVKRRRRDAAVVTVGGDDSQSHQQQQQQQPE 59

Query: 61  ------AAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEE 114
                 +AATTVKRSSR+RGVSRHRWTGR+EAHLWDKLSWNVTQKKKGKQ   GAYDEEE
Sbjct: 60  QQAHQISAATTVKRSSRYRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQ---GAYDEEE 116

Query: 115 AAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKY 174
           +AARAYDLAALKYWGTSTFTNFPISDYEKEIE MQTVTKEEYLASLRRKSSGFSRGVSKY
Sbjct: 117 SAARAYDLAALKYWGTSTFTNFPISDYEKEIEIMQTVTKEEYLASLRRKSSGFSRGVSKY 176

Query: 175 RGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSS 234
           RGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS+
Sbjct: 177 RGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLST 236

Query: 235 YIRWLKPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQ 294
           YIRWLKP     + A +E  T+ E + +LPS  +   REE K   F + P + D  + P+
Sbjct: 237 YIRWLKPEVAAQV-AANEPQTVAESR-MLPSINNRIAREESKPSFFSATPFSLDCWSYPR 294

Query: 295 KQEDCFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQH 354
           KQE+ FQ+   +      +K S+P+AL LLLRSSIF+ELVEKNSNVSEDE+EG+E KNQ 
Sbjct: 295 KQEE-FQNRTPITPC---SKTSSPTALSLLLRSSIFRELVEKNSNVSEDENEGEETKNQS 350

Query: 355 GTACDDEFGGIFYDGIADFPFI 376
               DDEFGG+FY+ I D PFI
Sbjct: 351 QIGSDDEFGGLFYERIGDIPFI 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529949|ref|XP_003533548.1| PREDICTED: ethylene-responsive transcription factor WRI1-like [Glycine max]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/392 (63%), Positives = 286/392 (72%), Gaps = 10/392 (2%)

Query: 1   MEMMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHIS- 59
           M MM     E    RR + + +GE Q  R VKRRRR+ A  +   DDN  QQ     +  
Sbjct: 1   MAMMKENIIEVSLGRRQMSMTEGEFQGTRSVKRRRREVAAAAGSGDDNHQQQLPQQEVGE 60

Query: 60  GAAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARA 119
                T KRSSRFRGVSRHRWTGRYEAHLWDKLSWN+TQKKKGKQ   GAYDEEE+AARA
Sbjct: 61  NTTVNTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQ---GAYDEEESAARA 117

Query: 120 YDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVAR 179
           YDLAALKYWGTSTFTNFPISDYEKEI+ MQT+TKEEYLA+LRRKSSGFSRGVSKYRGVAR
Sbjct: 118 YDLAALKYWGTSTFTNFPISDYEKEIQIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVAR 177

Query: 180 HHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWL 239
           HHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGI+AVTNFDLS+YI+WL
Sbjct: 178 HHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIKWL 237

Query: 240 KPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQEDC 299
           KP     L A  E     E Q V  SP++++  EE K L   ++  +   L+SP K E  
Sbjct: 238 KPSGGGTLEANLESHAALEHQKV-ASPSNYALTEESKSLALHNSFFSPYSLDSPVKHERF 296

Query: 300 FQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHG-TAC 358
                  +S    NK S+P+ALGLLLRSS+F+ELVEKNSNVS +E +G+  K+Q    A 
Sbjct: 297 GNKTYQFSS----NKSSSPTALGLLLRSSLFRELVEKNSNVSGEEDDGEATKDQQTQIAT 352

Query: 359 DDEFGGIFYDGIADFPFICSSNGGSIDFQERE 390
           DD+ GGIF+D  +D PF+C  N   ++ QER+
Sbjct: 353 DDDLGGIFFDSFSDIPFVCDPNRYDLELQERD 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567024|ref|XP_003551723.1| PREDICTED: ethylene-responsive transcription factor WRI1-like [Glycine max]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/393 (62%), Positives = 293/393 (74%), Gaps = 14/393 (3%)

Query: 3   MMMVKQ---EETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHIS 59
           M+M+K+   EE  GR + + +V+GE Q    VKRRRR+ A  +   DDN  QQ     + 
Sbjct: 1   MVMMKENIIEEKLGRSQ-MSMVEGEFQGTWGVKRRRREVAAAASSGDDNHHQQLPQQEVG 59

Query: 60  -GAAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAAR 118
             ++ +T KRSSRFRGVSRHRWTGRYEAHLWDKLSWN+TQKKKGKQ   GAYDEEE+AAR
Sbjct: 60  ENSSISTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQ---GAYDEEESAAR 116

Query: 119 AYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVA 178
           AYDLAALKYWG STFTNFPISDYEKEIE MQT+TKEEYLA+LRRKSSGFSRGVSKYRGVA
Sbjct: 117 AYDLAALKYWGNSTFTNFPISDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVA 176

Query: 179 RHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRW 238
           RHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGI+AVTNFDLS+YI+W
Sbjct: 177 RHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIKW 236

Query: 239 LKPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQED 298
           LKP          E   + E Q  L SP++++  EE K L+  ++ I+ D L+SP K E 
Sbjct: 237 LKPSGGGTPEENLESHAVLEHQK-LASPSNYALTEESKSLVLPNSFISPDSLDSPVKHES 295

Query: 299 CFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQH-GTA 357
                       + NK S+P+ALGLLLRSS+F+ELVEKNSNVS +E++G+  K+Q    A
Sbjct: 296 FGNKTYQF----SRNKSSSPTALGLLLRSSLFRELVEKNSNVSGEEADGEVTKDQQPQLA 351

Query: 358 CDDEFGGIFYDGIADFPFICSSNGGSIDFQERE 390
            DD+  GIF+D   D PF+C     +++ QER+
Sbjct: 352 SDDDLDGIFFDSFGDIPFVCDPTRYNLELQERD 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501657|ref|XP_003621117.1| AP2-like ethylene-responsive transcription factor [Medicago truncatula] gi|355496132|gb|AES77335.1| AP2-like ethylene-responsive transcription factor [Medicago truncatula]

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/389 (62%), Positives = 286/389 (73%), Gaps = 13/389 (3%)

Query: 3   MMMVKQEETQGRRRALVVVDG-EVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHISGA 61
           M M+ + E     ++   +DG EV+ AR VKR+RRD  V  +G D N+  Q+Q      +
Sbjct: 1   MAMLIENEVMCLGKSQRSMDGKEVKGARRVKRQRRDAIVPKIGDDANKMAQKQVGE--NS 58

Query: 62  AATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYD 121
              T KRSSRFRGVSRHRWTGR+EAHLWDKLSWN TQKKKGKQ   GAYDEEE+AARAYD
Sbjct: 59  TTNTSKRSSRFRGVSRHRWTGRFEAHLWDKLSWNTTQKKKGKQ---GAYDEEESAARAYD 115

Query: 122 LAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHH 181
           LAALKYWGTSTFTNFPISDY+KEIE M T+TKEEYLA+LRRKSSGFSRGVSKYRGVARHH
Sbjct: 116 LAALKYWGTSTFTNFPISDYDKEIEIMNTMTKEEYLATLRRKSSGFSRGVSKYRGVARHH 175

Query: 182 HNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKP 241
           HNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGI+AVTNF+LSSYI+WLKP
Sbjct: 176 HNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFELSSYIKWLKP 235

Query: 242 GTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQEDCFQ 301
            T       HE   L +    L  P + +  +E K L  Q +    + LNS +KQE  F+
Sbjct: 236 ETTT--EENHESQILQKESRTLAPPNNSTLLQESKLLALQKSFFIPNDLNSTEKQESSFE 293

Query: 302 SNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHGTACDDE 361
           +    N    +NK ++P+AL LLLRSS+F+EL+EKNSNVSEDE   ++++ Q     DDE
Sbjct: 294 NK---NYHFLSNKSTSPTALSLLLRSSLFRELLEKNSNVSEDEVTKEQQQQQ--ITSDDE 348

Query: 362 FGGIFYDGIADFPFICSSNGGSIDFQERE 390
            GGIFYDGI +  F    N  +I+ QER+
Sbjct: 349 LGGIFYDGIDNISFDFDPNSCNIELQERD 377

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424916|ref|XP_002270149.1| PREDICTED: ethylene-responsive transcription factor WRI1 [Vitis vinifera] gi|296086424|emb|CBI32013.3| unnamed protein product [Vitis vinifera]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/348 (64%), Positives = 260/348 (74%), Gaps = 18/348 (5%)

Query: 1   MEMMMVKQEETQGRRRALVVVDGEVQSARCVKRRRRDPAVTSLGCDDNQSQQQQNDHISG 60
           MEM  VK E    R R        ++  +CVKRRRRDP+  + GC     QQ+Q    +G
Sbjct: 1   MEMTTVKSELGLERGRLCTAETDALEVTKCVKRRRRDPSAVTPGCSKQGEQQKQVLLQAG 60

Query: 61  ----AAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAA 116
               A ATT+KRSSRFRGVSRHRWTGR+EAHLWDK SWNVTQ+KKGKQVYLGAYDEEE+A
Sbjct: 61  QSITAIATTMKRSSRFRGVSRHRWTGRFEAHLWDKGSWNVTQRKKGKQVYLGAYDEEESA 120

Query: 117 ARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRG 176
           ARAYDLAALKYWG STFTNFP+SDYEKEIE MQ +TKEEYLASLRR+SSGFSRGVSKYRG
Sbjct: 121 ARAYDLAALKYWGPSTFTNFPVSDYEKEIEIMQGLTKEEYLASLRRRSSGFSRGVSKYRG 180

Query: 177 VARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYI 236
           VARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAA AYDIAAIEYRGINAVTNF+LS+Y+
Sbjct: 181 VARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAAHAYDIAAIEYRGINAVTNFELSTYV 240

Query: 237 RWLKPGTNNILTAGHELPTLTEPQ--SVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQ 294
           RWL+P    +        T  EP+  S++ + ++  P EE +      NP T D L +P 
Sbjct: 241 RWLRPRATAL--------TPQEPRSNSIMQASSNCLPNEEVELSFLSPNPFTVDDLATPL 292

Query: 295 KQEDCFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSE 342
           KQE  FQ  VS++      K S+P+AL LL RSS+F++LVEKNSN  E
Sbjct: 293 KQEK-FQREVSISPC---TKSSSPTALSLLHRSSVFRQLVEKNSNSIE 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570045|ref|XP_003553203.1| PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Glycine max]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/383 (61%), Positives = 288/383 (75%), Gaps = 14/383 (3%)

Query: 1   MEMMMVKQEETQGRRRALVVVDG-EVQSARCVKRRRRDPAVTSLGCDDNQSQQ-QQNDHI 58
           ME+  VK E +  R   LV++DG +V S +C KRRRRD ++  LG +  Q +Q ++   +
Sbjct: 1   MELAPVKSELSP-RSHRLVIIDGSDVISTKCAKRRRRDSSMAVLGGNGQQGEQLEEQKQL 59

Query: 59  SG-AAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAA 117
            G + ATTVKRSSRFRGVSRHRWTGR+EAHLWDK +WN TQKKKGKQVYLGAY++EEAAA
Sbjct: 60  GGQSTATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAA 119

Query: 118 RAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGV 177
           RAYDLAALKYWGTSTFTNFP+SDYEKEIE M+TVTKEEYLASLRR+SSGFSRGVSKYRGV
Sbjct: 120 RAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGV 179

Query: 178 ARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIR 237
           ARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS+YIR
Sbjct: 180 ARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIR 239

Query: 238 WLKPGTNNILTAGHELPTLTEPQSVLPSPTDFSPREEPKYLLFQSNPITADFLNSPQKQE 297
           WL+PGT+   TA H+    T+ Q +  +      R   +      +   +  L+S +K++
Sbjct: 240 WLRPGTHP--TASHDQKPSTDAQ-LFATSNSMQTRGNIEVSNSNMHSFPSGELDSTKKRD 296

Query: 298 DCFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGDEKKNQHGTA 357
                +  +N  +  NKPS+P+ALGLLL+SS+F+EL+++N N S +E++ + K  Q G  
Sbjct: 297 ----FSKYMNPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSSEEADVELKYPQEG-- 350

Query: 358 CDDEFGGIFYDGIADFPFICSSN 380
            +D  GGI+ +      + CSSN
Sbjct: 351 -NDGVGGIYDNDNTSNSYFCSSN 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111258|ref|XP_002315794.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222864834|gb|EEF01965.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/402 (58%), Positives = 278/402 (69%), Gaps = 32/402 (7%)

Query: 1   MEMMMVKQEETQGRRRALVVVDGEV---QSARCVKRRRRDPAVTSLGCDDNQSQQQQNDH 57
           MEM     ++    RR L +++ E    ++ +C+KRRRRDP+  +L C+ N  Q  Q   
Sbjct: 1   MEMTRNTGDQISLGRRRLCMIEEERRAGEAGKCIKRRRRDPSTFALSCNINDQQSDQQQQ 60

Query: 58  I------SGAAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYD 111
                  + A ATTVKRSSRFRGVSRHRWTGR+EAHLWDK +WN TQ+KKGKQ   GAYD
Sbjct: 61  QQSLGDRTAAVATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQRKKGKQ---GAYD 117

Query: 112 EEEAAARAYDLAALKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGV 171
           EEE+AARAYDLAALKYWGTSTFTNFP SDYEKEIE M+TVTKEEYLASLRR+SSGFSRGV
Sbjct: 118 EEESAARAYDLAALKYWGTSTFTNFPASDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGV 177

Query: 172 SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFD 231
           SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAA AYDIAAIEYRGINAVTNFD
Sbjct: 178 SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAAHAYDIAAIEYRGINAVTNFD 237

Query: 232 LSSYIRWLKPGTNNILTAGHELPTLTEPQSVLPSPT--DFSPREEPKYL-LFQSNPITAD 288
           LS+YIRWLKP  +       E    ++P   LP  T  +  P E+P  L + Q +P   D
Sbjct: 238 LSTYIRWLKPEASLPAPQTQESKPASDP---LPMATFSNHLPSEKPTQLSVLQMDPSLMD 294

Query: 289 FLNSPQKQEDCFQSNVSVNSGNNNNKPSTPSALGLLLRSSIFKELVEKNSNVSEDESEGD 348
            LN+P K ED F       S     + S+ +AL LL +SSIFKELVEKN N + +E E +
Sbjct: 295 NLNTP-KNEDIFHRKTLPVSP--LTRSSSSTALSLLFKSSIFKELVEKNLNTTSEEIEEN 351

Query: 349 EKKNQHGTACDDEFGGIFYDGIADF---------PFICSSNG 381
           + KN H    ++  G  FYDG++           PF+CS  G
Sbjct: 352 DSKNPHN--GNNNAGEAFYDGLSPIPHTGTSTEDPFLCSEQG 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
TAIR|locus:2200477	345	ADAP "ARIA-interacting double	0.577	0.657	0.580	7.2e-68
TAIR|locus:2017829	313	WRI4 "WRINKLED 4" [Arabidopsis	0.435	0.546	0.701	5.2e-65
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.526	0.370	0.555	6.6e-58
TAIR|locus:2178915	584	BBM "BABY BOOM" [Arabidopsis t	0.430	0.289	0.633	1.2e-56
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.643	0.445	0.461	1.2e-56
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.445	0.304	0.605	8.6e-56
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.557	0.439	0.520	1.8e-55
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.430	0.407	0.603	2.1e-54
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.430	0.304	0.609	3.4e-54
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.399	0.363	0.482	5.1e-35

TAIR|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 137/236 (58%), Positives = 168/236 (71%)

Query:    67 KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXXXXK 126
             +RSS  RGV+RHRWTGRYEAHLWDK SWN TQ KKG+QVYLG                 K
Sbjct:    54 QRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALK 113

Query:   127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
             YWG  T  NFP+ +YE++I+ M++ +KEEY+ SLRRKSSGFSRGVSKYRGVA+HHHNGRW
Sbjct:   114 YWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRW 173

Query:   187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGT--- 243
             EARIGRVFGNKYLYLGTY+TQEEAA AYDIAAIEYRG+NAVTNFD+S Y++   P     
Sbjct:   174 EARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDISRYLKLPVPENPID 233

Query:   244 --NNILTAGH-ELPTLTEP--QSVLP-SPTDFSPREEPKYLLFQSNPITADFLNSP 293
               NN+L + H +L    +P  +S L  S +     ++ K  L +S+P+ A+ +  P
Sbjct:   234 TANNLLESPHSDLSPFIKPNHESDLSQSQSSSEDNDDRKTKLLKSSPLVAEEVIGP 289

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 120/171 (70%), Positives = 138/171 (80%)

Query:    66 VKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXXXX 125
             ++RSS +RGV+RHRWTGRYEAHLWDK SWN TQ KKG+QVYLG                 
Sbjct:    47 LQRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAAL 106

Query:   126 KYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGR 185
             KYWG  T  NFP+  Y+++++ M+  +KEEY+ SLRRKSSGFSRGVSKYRGVARHHHNGR
Sbjct:   107 KYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGR 166

Query:   186 WEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYI 236
             WEARIGRVFGNKYLYLGTY+TQEEAA AYDIAAIEYRG+NAVTNFD+S Y+
Sbjct:   167 WEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDVSRYL 217

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0003677 "DNA binding" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 116/209 (55%), Positives = 144/209 (68%)

Query:    67 KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXXXXK 126
             +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG                 K
Sbjct:   199 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALK 258

Query:   127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
             YWG +T TNFPIS+YE E+E M+ +T++E++ASLRRKSSGFSRG S YRGV RHH +GRW
Sbjct:   259 YWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRW 318

Query:   187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGTNNI 246
             +ARIGRV GNK LYLGT+STQEEAA AYDIAAI++RG+NAVTNFD+S Y   +K   +  
Sbjct:   319 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYD--VKSIASCN 376

Query:   247 LTAGHELPTLTEPQSVLPSPTDFSPREEP 275
             L  G  +P  +   +      D SP + P
Sbjct:   377 LPVGGLMPKPSPATAAADKTVDLSPSDSP 405

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 107/169 (63%), Positives = 131/169 (77%)

Query:    67 KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXXXXK 126
             +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG                 K
Sbjct:   206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query:   127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
             YWGT+T TNFP+S+YEKE+E M+ +T++EY+ASLRRKSSGFSRG S YRGV RHH +GRW
Sbjct:   266 YWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query:   187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
             +ARIGRV GNK LYLGT+ TQEEAA AYDIAAI++RG++AVTNFD++ Y
Sbjct:   326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNRY 374

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 120/260 (46%), Positives = 162/260 (62%)

Query:     9 EETQGRRRALVVVDGEVQSARC-VKRRRRDPAVTSLGCXXXXXXXXXXXHISGAAATTVK 67
             +E+    ++L +  G   +A   V   +  PA TS               +      T++
Sbjct:   123 QESAHNLQSLTLSMGSTGAAAAEVATVKASPAETSADNSSSTTNTSGGAIVEATPRRTLE 182

Query:    68 ----RSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXX 123
                 R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG               
Sbjct:   183 TFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLA 242

Query:   124 XXKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHN 183
               KYWG ST TNFPI++YEKE+E M+ +T++E++AS+RRKSSGFSRG S YRGV RHH +
Sbjct:   243 ALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQH 302

Query:   184 GRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY-IRWLKPG 242
             GRW+ARIGRV GNK LYLGT+ST+EEAA AYDIAAI++RG+NAVTNF+++ Y ++ +   
Sbjct:   303 GRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILE- 361

Query:   243 TNNILTAGHELPTLTEPQSV 262
             +N +   G     L E Q++
Sbjct:   362 SNTLPIGGGAAKRLKEAQAL 381

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 106/175 (60%), Positives = 133/175 (76%)

Query:    61 AAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXX 120
             A  T  +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG            
Sbjct:   171 ALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSY 230

Query:   121 XXXXXKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARH 180
                  KYWG ST TNFPI++YEKE+E M+ +T++E++A++RRKSSGFSRG S YRGV RH
Sbjct:   231 DLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRH 290

Query:   181 HHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
             H +GRW+ARIGRV GNK LYLGT+ST+EEAA AYDIAAI++RG+NAVTNF+++ Y
Sbjct:   291 HQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 345

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 116/223 (52%), Positives = 148/223 (66%)

Query:    64 TTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXX 123
             T  +R+S +RGV+RHRWTGRYEAHLWD       Q +KG+QVYLG               
Sbjct:   224 TLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLA 283

Query:   124 XXKYWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHN 183
               KYWG++  TNFP+S Y KE+E M  +TK+E++ASLRRKSSGFSRG S YRGV RHH  
Sbjct:   284 ALKYWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQ 343

Query:   184 GRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLKPGT 243
             GRW+ARIGRV GNK LYLGT++T+EEAA AYDIAAI++RGINAVTNF+++ Y   ++   
Sbjct:   344 GRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYD--IEAVM 401

Query:   244 NNILTAGHELPTLTEPQSVLPSPTDFSPRE--EPKYLLFQSNP 284
             N+ L  G       + +  L SP+  S     + + LL  S+P
Sbjct:   402 NSSLPVGGAAAKRHKLKLALESPSSSSSDHNLQQQQLLPSSSP 444

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 102/169 (60%), Positives = 127/169 (75%)

Query:    67 KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXXXXK 126
             +R+S++RGV+RHRWTGRYEAHLWD       Q ++G+QVYLG                 K
Sbjct:   219 QRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALK 278

Query:   127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
             YWG +T  NFP+S+YEKEIE +  + ++E++A LRR SSGFSRG S YRGV RHH +GRW
Sbjct:   279 YWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRW 338

Query:   187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
             +ARIGRV GNK LYLGT+STQEEAA AYDIAAI++RG+NAVTNFD++ Y
Sbjct:   339 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 103/169 (60%), Positives = 125/169 (73%)

Query:    67 KRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXXXXK 126
             +R+S++RGV+RHRWTGRYEAHLWD         +KG+QVYLG                 K
Sbjct:   279 QRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALK 338

Query:   127 YWGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRW 186
             YWG ST TNF   +Y+KEIE M+ +T++EY+A LRRKSSGFSRG S YRGV RHH +GRW
Sbjct:   339 YWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRW 398

Query:   187 EARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
             +ARIGRV GNK LYLGT+ TQEEAA AYD+AAI++RG NAVTNFD++ Y
Sbjct:   399 QARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRY 447

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 81/168 (48%), Positives = 105/168 (62%)

Query:    68 RSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGXXXXXXXXXXXXXXXXXKY 127
             RSS++RGV+ +R TGR+E+H+WD           GKQVYLG                 K+
Sbjct:   128 RSSQYRGVTFYRRTGRWESHIWDC----------GKQVYLGGFDTAHAAARAYDRAAIKF 177

Query:   128 WGTSTFTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWE 187
              G     NF I DY+ +++ M  +TKEE++  LRR+S+GF RG SKYRGV  H   GRWE
Sbjct:   178 RGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKC-GRWE 236

Query:   188 ARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSY 235
             AR+G+  G KY+YLG + T+ EAARAYD AAI+  G +AVTNFD S Y
Sbjct:   237 ARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIY 284

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6X5Y6	WRI1_ARATH	No assigned EC number	0.7013	0.5419	0.4953	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	393
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	6e-25
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-23
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-21
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-18
pfam00847	53	pfam00847, AP2, AP2 domain	6e-11
pfam00847	53	pfam00847, AP2, AP2 domain	1e-09

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 96.2 bits (240), Expect = 6e-25
 Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 173 KYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDL 232
           KYRGV R    G+W A I      K ++LGT+ T EEAARAYD AA ++RG +A  NF  
Sbjct: 1   KYRGV-RQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 233 SSY 235
           S Y
Sbjct: 60  SLY 62

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 92.7 bits (231), Expect = 1e-23
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 172 SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFD 231
           SKYRGV R    G+W A I    G + ++LGT+ T EEAARAYD AA++ RG +AV NF 
Sbjct: 1   SKYRGV-RQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

Query: 232 LS 233
            S
Sbjct: 60  DS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 87.3 bits (217), Expect = 1e-21
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 9/73 (12%)

Query: 71  RFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGT 130
           ++RGV +  W G++ A + D          KGK+V+LG +D  E AARAYD AA K+ G 
Sbjct: 1   KYRGVRQRPW-GKWVAEIRDP--------SKGKRVWLGTFDTAEEAARAYDRAAFKFRGR 51

Query: 131 STFTNFPISDYEK 143
           S   NFP S Y+ 
Sbjct: 52  SARLNFPNSLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 9/70 (12%)

Query: 70  SRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWG 129
           S++RGV +  W G++ A + D           G++++LG +D  E AARAYD AALK  G
Sbjct: 1   SKYRGVRQRPW-GKWVAEIRDP--------SGGRRIWLGTFDTAEEAARAYDRAALKLRG 51

Query: 130 TSTFTNFPIS 139
           +S   NFP S
Sbjct: 52  SSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 172 SKYRGVARHHHNGRWEARIGRV--FGNKYLYLGTYSTQEEAARAYDIAAIEYRG 223
           S Y+GV      GRW A I        K   LGT+ T EEAARA   A ++ RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 70  SRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWG 129
           S ++GV   +  GR+ A + D        +KK K+  LG +  EE AARA   A LK  G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDP------GEKKKKRFSLGTFGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.74
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.74
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.68
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.68
PHA00280	121	putative NHN endonuclease	99.55
PHA00280	121	putative NHN endonuclease	99.54
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.07
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.99

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.74  E-value=3.8e-18  Score=130.54  Aligned_cols=61  Identities=48%  Similarity=0.863  Sum_probs=56.9

Q ss_pred             CCeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCCccccCCCCC
Q 042319           70 SRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPIS  139 (393)
Q Consensus        70 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~~a~~NFp~~  139 (393)
                      |+|+||+++++ |||.|+|+.+.        .|+++|||+|+|+||||.|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~~~--------~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRDPS--------GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEeCC--------CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            78999999998 99999998762        489999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.74  E-value=5.6e-18  Score=131.07  Aligned_cols=63  Identities=49%  Similarity=0.892  Sum_probs=59.0

Q ss_pred             CeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCCccccCCCCCchh
Q 042319           71 RFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPISDYE  142 (393)
Q Consensus        71 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~~a~~NFp~~~yd  142 (393)
                      +|+||+++++ |||.|+|+++        .+|+++|||+|+|+||||.|||.|+++++|..+.+|||.++|+
T Consensus         1 ~~kGV~~~~~-gkw~A~I~~~--------~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPW-GKWVAEIRDP--------SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCC-CeEEEEEEec--------CCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5899999887 9999999885        2699999999999999999999999999999999999999986

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.68  E-value=6.1e-17  Score=125.27  Aligned_cols=63  Identities=49%  Similarity=0.709  Sum_probs=58.0

Q ss_pred             ccccceecccCCeeEEeeccccCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCcccCCCCchhh
Q 042319          173 KYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYI  236 (393)
Q Consensus       173 ~yrGV~~~~~~grW~A~I~~~~~~k~i~LG~f~t~EEAA~AYD~Aa~~l~G~~a~~NF~~~~y~  236 (393)
                      +|+||+++ .+|+|+|+|+.+.+++.++||+|+|+||||.|||.++++++|..+.+|||.+.|.
T Consensus         1 ~~kGV~~~-~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQR-PWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeC-CCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            58999874 5699999997555899999999999999999999999999999999999999985

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.68  E-value=6.2e-17  Score=123.81  Aligned_cols=61  Identities=52%  Similarity=0.803  Sum_probs=55.0

Q ss_pred             cccccceecccCCeeEEeeccccCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCcccCCCCc
Q 042319          172 SKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS  233 (393)
Q Consensus       172 S~yrGV~~~~~~grW~A~I~~~~~~k~i~LG~f~t~EEAA~AYD~Aa~~l~G~~a~~NF~~~  233 (393)
                      |+|+||++++. |+|+|+|+....++.++||+|+|+||||.|||.++++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999998764 99999996433489999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.55  E-value=1.6e-14  Score=125.46  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhhcCCcc----ccCCCCCchhHHHHHhhhhhHHHHHHhhhccCCCCcccccccccceecccCCeeEEeecc
Q 042319          117 ARAYDLAALKYWGTST----FTNFPISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGR  192 (393)
Q Consensus       117 A~AYD~Aa~~~~G~~a----~~NFp~~~yd~Ei~~Lr~vS~eE~v~~LRrkssg~sr~~S~yrGV~~~~~~grW~A~I~~  192 (393)
                      -+++..+...++|+-.    ..-......++.+.+|+.++..++..+.+..    ++++|+|+||+|++..|||+|+|  
T Consensus        12 ~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I--   85 (121)
T PHA00280         12 PRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTV--   85 (121)
T ss_pred             hhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEE--
Confidence            3456677778888743    1122344567889999999999998886544    37789999999999999999999  


Q ss_pred             ccCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCcc
Q 042319          193 VFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAV  227 (393)
Q Consensus       193 ~~~~k~i~LG~f~t~EEAA~AYD~Aa~~l~G~~a~  227 (393)
                      ..+||.++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus        86 ~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         86 TAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             EECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            58999999999999999999997 77899998764

>PHA00280 putative NHN endonuclease

Probab=99.54  E-value=1.1e-14  Score=126.43  Aligned_cols=72  Identities=18%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             hhhhhhhhcccCCCCCCCCCCCCeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhc
Q 042319           49 QSQQQQNDHISGAAATTVKRSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYW  128 (393)
Q Consensus        49 ~~~~~~n~~~~~~~~~~~~~sS~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~  128 (393)
                      .+++.+|..|   ....++++|||+||+|++.+|||.|.|+          ++||+++||.|+++|+|+.||+ ++.+++
T Consensus        49 ~~T~~eN~~N---~~~~~~N~SG~kGV~~~k~~~kw~A~I~----------~~gK~~~lG~f~~~e~A~~a~~-~~~~lh  114 (121)
T PHA00280         49 LALPKENSWN---MKTPKSNTSGLKGLSWSKEREMWRGTVT----------AEGKQHNFRSRDLLEVVAWIYR-TRRELH  114 (121)
T ss_pred             hcCHHHHhcc---cCCCCCCCCCCCeeEEecCCCeEEEEEE----------ECCEEEEcCCCCCHHHHHHHHH-HHHHHh
Confidence            5778889988   6678899999999999999999999995          4699999999999999999997 778999


Q ss_pred             CCcccc
Q 042319          129 GTSTFT  134 (393)
Q Consensus       129 G~~a~~  134 (393)
                      |.++..
T Consensus       115 GeFa~~  120 (121)
T PHA00280        115 GQFARF  120 (121)
T ss_pred             hccccC
Confidence            998753

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.07  E-value=3.3e-10  Score=84.67  Aligned_cols=56  Identities=32%  Similarity=0.351  Sum_probs=47.6

Q ss_pred             CCeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCC
Q 042319           70 SRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGT  130 (393)
Q Consensus        70 S~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~  130 (393)
                      |+|+||+|++..++|+|.|++... +.    .++.++||.|+++++|++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~-~g----~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSE-NG----KRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCC-TT----EEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEccc-Cc----ccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            789999999999999999987421 11    139999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.99  E-value=8.8e-10  Score=82.40  Aligned_cols=53  Identities=36%  Similarity=0.500  Sum_probs=46.5

Q ss_pred             cccccceecccCCeeEEeecccc-C--CeEEecCCCCcHHHHHHHHHHHHHHhcCC
Q 042319          172 SKYRGVARHHHNGRWEARIGRVF-G--NKYLYLGTYSTQEEAARAYDIAAIEYRGI  224 (393)
Q Consensus       172 S~yrGV~~~~~~grW~A~I~~~~-~--~k~i~LG~f~t~EEAA~AYD~Aa~~l~G~  224 (393)
                      |+|+||++++..++|+|+|+... +  +++++||.|++++||++||+.++++++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999997421 1  49999999999999999999999999873

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-13
1gcc_A	63	Ethylene responsive element binding factor 1; tran	5e-13

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 173 KYRGVARHHHNGRWEARIGRVFGNKY-LYLGTYSTQEEAARAYDIAAIEYRGINAVTNF 230
            YRGV +    G++ A I     N   ++LGT+ T E+AA AYD AA   RG  A+ NF
Sbjct: 2   HYRGVRQRPW-GKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 62.7 bits (153), Expect = 5e-13
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 71  RFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGT 130
            +RGV +  W G++ A + D         K G +V+LG ++  E AA AYD AA +  G+
Sbjct: 2   HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGS 53

Query: 131 STFTNFPI 138
               NFP+
Sbjct: 54  RALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.84
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.77
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	94.51
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	92.85
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	87.47

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.84  E-value=1.7e-21  Score=149.86  Aligned_cols=61  Identities=39%  Similarity=0.832  Sum_probs=56.9

Q ss_pred             CeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCCccccCCCCC
Q 042319           71 RFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPIS  139 (393)
Q Consensus        71 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~~a~~NFp~~  139 (393)
                      +|+||++++| |||+|+|+++       ..+|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~-gkw~A~I~~~-------~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCC-CcEEEEEccc-------cCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999997 9999999987       24589999999999999999999999999999999999974

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.77  E-value=3.2e-19  Score=137.13  Aligned_cols=60  Identities=42%  Similarity=0.630  Sum_probs=54.7

Q ss_pred             ccccceecccCCeeEEeecccc-CCeEEecCCCCcHHHHHHHHHHHHHHhcCCCcccCCCCc
Q 042319          173 KYRGVARHHHNGRWEARIGRVF-GNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS  233 (393)
Q Consensus       173 ~yrGV~~~~~~grW~A~I~~~~-~~k~i~LG~f~t~EEAA~AYD~Aa~~l~G~~a~~NF~~~  233 (393)
                      +|+||+++ .+|||+|+|+.+. +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            59999875 6899999998654 479999999999999999999999999999999999975

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=94.51  E-value=0.0034  Score=55.97  Aligned_cols=88  Identities=8%  Similarity=-0.020  Sum_probs=59.5

Q ss_pred             HHHHHHHhhcCCcc---ccCC-CCCchhHHHHHhhhhhHHHHHHhhhccCCCCcccccccccceecccCCeeEEeecccc
Q 042319          119 AYDLAALKYWGTST---FTNF-PISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVF  194 (393)
Q Consensus       119 AYD~Aa~~~~G~~a---~~NF-p~~~yd~Ei~~Lr~vS~eE~v~~LRrkssg~sr~~S~yrGV~~~~~~grW~A~I~~~~  194 (393)
                      ++...|..|.|...   ..++ .....++.+.+|+.+|..++.........   .  ..++||.+ +..++|.+.|.  .
T Consensus        55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~---~--~~~~g~~~-~~~~k~~~vi~--~  126 (174)
T 1u3e_M           55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT---L--NVSKAQQI-AKIKNQKPIIV--I  126 (174)
T ss_dssp             HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC---C--CCHHHHHH-HHHHTCCCEEE--E
T ss_pred             eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc---c--cceeeeee-ccCCCCceEEE--E
Confidence            45555666766531   1222 24456678899999999999876554421   1  12578866 55678988884  4


Q ss_pred             CCeEEecCCCCcHHHHHHHHH
Q 042319          195 GNKYLYLGTYSTQEEAARAYD  215 (393)
Q Consensus       195 ~~k~i~LG~f~t~EEAA~AYD  215 (393)
                      + +.++||.|.|.+|||++|.
T Consensus       127 ~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          127 S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             C-TTSCEEEESCHHHHHHHHT
T ss_pred             c-CCceEEeeCCHHHHHHHHC
Confidence            4 5567999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=92.85  E-value=0.074  Score=41.84  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=21.3

Q ss_pred             CCCCCeeeeeEeCCCCeeEEEEecc
Q 042319           67 KRSSRFRGVSRHRWTGRYEAHLWDK   91 (393)
Q Consensus        67 ~~sS~yrGV~~~~~~grw~A~I~~~   91 (393)
                      ..+|+|.||+|+++.+.|.|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            3579999999999999999987654

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=87.47  E-value=0.38  Score=37.81  Aligned_cols=28  Identities=25%  Similarity=0.227  Sum_probs=22.2

Q ss_pred             ccccccccceecccCCeeEEeeccccCCeE
Q 042319          169 RGVSKYRGVARHHHNGRWEARIGRVFGNKY  198 (393)
Q Consensus       169 r~~S~yrGV~~~~~~grW~A~I~~~~~~k~  198 (393)
                      ...|+|.||+|++..+.|.|.-.  .++++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFY--DGASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEE--ETTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEe--cCCeE
Confidence            34699999999999999999983  44544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	393
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-20
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-20

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.4 bits (204), Expect = 2e-20
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 173 KYRGVARHHHNGRWEARIGRVFGN-KYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFD 231
            YRGV R    G++ A I     N   ++LGT+ T E+AA AYD AA   RG  A+ NF 
Sbjct: 2   HYRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 232 L 232
           L
Sbjct: 61  L 61

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.5 bits (199), Expect = 6e-20
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 71  RFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGT 130
            +RGV +  W G++ A + D         K G +V+LG ++  E AA AYD AA +  G+
Sbjct: 2   HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGS 53

Query: 131 STFTNFPI 138
               NFP+
Sbjct: 54  RALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	393
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.85
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.78

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=3.4e-22  Score=151.96  Aligned_cols=61  Identities=39%  Similarity=0.832  Sum_probs=56.9

Q ss_pred             CeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCCccccCCCCC
Q 042319           71 RFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPIS  139 (393)
Q Consensus        71 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~~a~~NFp~~  139 (393)
                      +||||+++++ |||.|+|+++       ..+++++|||+|+|+||||+|||.|+++++|+.+.+|||+.
T Consensus         2 ~yrGVr~r~~-gkw~A~Ir~~-------~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCC-CCEEEEEecC-------CCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999999986 9999999987       45789999999999999999999999999999999999974

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=5.3e-20  Score=139.73  Aligned_cols=60  Identities=42%  Similarity=0.625  Sum_probs=54.0

Q ss_pred             ccccceecccCCeeEEeeccc-cCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCcccCCCCc
Q 042319          173 KYRGVARHHHNGRWEARIGRV-FGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS  233 (393)
Q Consensus       173 ~yrGV~~~~~~grW~A~I~~~-~~~k~i~LG~f~t~EEAA~AYD~Aa~~l~G~~a~~NF~~~  233 (393)
                      .||||+++ .+|||+|+|+.+ .+++++|||+|+|+||||+|||.|+++++|..+.+|||+.
T Consensus         2 ~yrGVr~r-~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeEC-CCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            49999765 579999999753 4668999999999999999999999999999999999985