Citrus Sinensis ID: 042378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-----
Protein Sequence
MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccEEHHHHHHcEEEEHHHccccHHHHcccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHEEHHHHHccccHEEEEEHEEEHEEEEcccccHHHccccHHHHHHcc
Coil and Loop (DISEMBL)
mrkfdpwpvffrrewnrnwpfLVGFAITGTIITkfslglteedaknspfvqrhkr
Flexible Loop (DISEMBL)
mrkfdpwpvffrrEWNRNWPFLVGFAITGTIITKFslglteedaknspfvqrhkr
Low Complexity Region (SEG)
MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR
Disordered region (IsUnstruct)
****DPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGL****************
Disordered Region (DISOPRED)
**KFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDA***********
Disordered Region (DISEMBL)
MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDA***********
Disordered Region (DISPRO)
*RKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDA*N*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	55	2.2.26 [Sep-21-2011]
P80497	25	ATP synthase 6 kDa subuni	N/A	no	0.454	1.0	0.84	3e-05

>sp|P80497|ATPY_SOLTU ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGF 25
          MR+FDPWPVFFRREW+RN PFLV F
Sbjct: 1  MRQFDPWPVFFRREWSRNQPFLVXF 25


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.142    0.492 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,352,041
Number of Sequences: 539616
Number of extensions: 618963
Number of successful extensions: 1359
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 3
length of query: 55
length of database: 191,569,459
effective HSP length: 28
effective length of query: 27
effective length of database: 176,460,211
effective search space: 4764425697
effective search space used: 4764425697
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain.
Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	55
225440308	55	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.981	2e-23
224112803	56	predicted protein [Populus trichocarpa]	1.0	0.982	0.945	7e-23
224098368	56	predicted protein [Populus trichocarpa]	1.0	0.982	0.909	3e-22
359478980	56	PREDICTED: uncharacterized protein LOC10	1.0	0.982	0.872	6e-21
255581117	57	conserved hypothetical protein [Ricinus	0.981	0.947	0.925	1e-20
357454089	55	Mitochondrial ATP synthase subunit [Medi	1.0	1.0	0.836	1e-20
257219558	56	mitochondrial ATP synthase 6kDa subunit	0.963	0.946	0.905	4e-20
356542493	55	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.836	5e-20
357472657	55	Mitochondrial ATP synthase subunit [Medi	1.0	1.0	0.818	5e-20
356539062	55	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.818	1e-19

>gi|225440308|ref|XP_002262887.1| PREDICTED: uncharacterized protein LOC100258053 [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/55 (98%), Positives = 54/55 (98%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          M KFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR
Sbjct: 1  MAKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112803|ref|XP_002316297.1| predicted protein [Populus trichocarpa] gi|118483973|gb|ABK93874.1| unknown [Populus trichocarpa] gi|118485005|gb|ABK94367.1| unknown [Populus trichocarpa] gi|222865337|gb|EEF02468.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/55 (94%), Positives = 53/55 (96%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          MRKFDPWPVFFRREWNRNWPFL GFAITGT+ITKFSL LTEEDAKNSPFVQRHKR
Sbjct: 1  MRKFDPWPVFFRREWNRNWPFLAGFAITGTLITKFSLSLTEEDAKNSPFVQRHKR 55

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098368|ref|XP_002311158.1| predicted protein [Populus trichocarpa] gi|118488031|gb|ABK95836.1| unknown [Populus trichocarpa] gi|222850978|gb|EEE88525.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          MRKFDPWPVFF+REWNRNWPFLVGFAITG +ITKFSL LTEEDAKNSPFVQRHK+
Sbjct: 1  MRKFDPWPVFFKREWNRNWPFLVGFAITGALITKFSLSLTEEDAKNSPFVQRHKK 55

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478980|ref|XP_002281230.2| PREDICTED: uncharacterized protein LOC100265565 [Vitis vinifera]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/55 (87%), Positives = 51/55 (92%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          MRKFDPWPVFFRREWNRNWPFLVGFA+TG IIT +SL LTEEDAK SPFVQRH+R
Sbjct: 1  MRKFDPWPVFFRREWNRNWPFLVGFAVTGIIITVYSLSLTEEDAKKSPFVQRHER 55

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581117|ref|XP_002531373.1| conserved hypothetical protein [Ricinus communis] gi|223529033|gb|EEF31021.1| conserved hypothetical protein [Ricinus communis]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 52/54 (96%)

Query: 2  RKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          R FDPWPVFF+RE+NRNWPFLVGFAITGTIITK SLGLTEEDAKNSPFVQRHKR
Sbjct: 3  RWFDPWPVFFKREFNRNWPFLVGFAITGTIITKLSLGLTEEDAKNSPFVQRHKR 56

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454089|ref|XP_003597325.1| Mitochondrial ATP synthase subunit [Medicago truncatula] gi|355486373|gb|AES67576.1| Mitochondrial ATP synthase subunit [Medicago truncatula]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 51/55 (92%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          MRKFD WPVFF+REWNRNWPFLVGFA+TG ++TKFSLGL+EEDAKNS FVQ HKR
Sbjct: 1  MRKFDAWPVFFKREWNRNWPFLVGFAVTGALVTKFSLGLSEEDAKNSKFVQAHKR 55

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257219558|gb|ACV50432.1| mitochondrial ATP synthase 6kDa subunit [Jatropha curcas]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 50/53 (94%)

Query: 2  RKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHK 54
          RKFDPWPVFFRRE+NRNWPFLVGF ITG +ITKFSLGLTEEDAKNS FVQRHK
Sbjct: 3  RKFDPWPVFFRREFNRNWPFLVGFGITGAVITKFSLGLTEEDAKNSKFVQRHK 55

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542493|ref|XP_003539701.1| PREDICTED: uncharacterized protein LOC100306502 [Glycine max]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          MRKFDPWPVFF+REW RNWPFLVGFA+TG +ITK SLGLTEEDAKNS FV+ HKR
Sbjct: 1  MRKFDPWPVFFKREWKRNWPFLVGFAVTGALITKLSLGLTEEDAKNSKFVKAHKR 55

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472657|ref|XP_003606613.1| Mitochondrial ATP synthase subunit [Medicago truncatula] gi|355507668|gb|AES88810.1| Mitochondrial ATP synthase subunit [Medicago truncatula] gi|388518417|gb|AFK47270.1| unknown [Medicago truncatula]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 50/55 (90%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          MR+FDPWPVFF+REW R WPFLVGFA+TG ++TKFSLGLTEEDAKNS FVQ HKR
Sbjct: 1  MRQFDPWPVFFKREWKRTWPFLVGFAVTGALVTKFSLGLTEEDAKNSKFVQHHKR 55

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539062|ref|XP_003538019.1| PREDICTED: uncharacterized protein LOC100778481 isoform 1 [Glycine max] gi|356539064|ref|XP_003538020.1| PREDICTED: uncharacterized protein LOC100778481 isoform 2 [Glycine max]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 50/55 (90%)

Query: 1  MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
          MRKFDPWPVFF+REW RNWPFLVGFA+TG +ITK SLGLTEE+AKNS FV+ HKR
Sbjct: 1  MRKFDPWPVFFKREWKRNWPFLVGFAVTGALITKLSLGLTEEEAKNSKFVKAHKR 55

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	55
TAIR|locus:2078201	55	AT3G46430 "AT3G46430" [Arabido	1.0	1.0	0.745	2.7e-20
TAIR|locus:504954866	55	AT5G59613 "AT5G59613" [Arabido	1.0	1.0	0.745	2.7e-20
DICTYBASE|DDB_G0275383	68	DDB_G0275383 "transmembrane pr	0.818	0.661	0.422	0.00013

TAIR|locus:2078201 AT3G46430 "AT3G46430" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query:     1 MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
             MR FDPWPVFF+REW R WPFL GFA+TG +ITK + GLTEEDAKNS FVQ+H+R
Sbjct:     1 MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:504954866 AT5G59613 "AT5G59613" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query:     1 MRKFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55
             MR FDPWPVFF+REW R WPFL GFA+TG +ITK + GLTEEDAKNS FVQ+H+R
Sbjct:     1 MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

DICTYBASE|DDB_G0275383 DDB_G0275383 "transmembrane protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query:     3 KFDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNS 47
             K  P+  F  ++    WPFLVG      IITK  +G+TEE+  NS
Sbjct:     2 KVQPFSQFLAQQGKIYWPFLVGAGAWALIITKVHMGITEENKANS 46


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.142   0.492    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       55        55   0.00091  102 3  11 22  0.42    27
                                                     29  0.40    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  501 (53 KB)
  Total size of DFA:  96 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.44u 0.17s 6.61t   Elapsed:  00:00:00
  Total cpu time:  6.44u 0.17s 6.61t   Elapsed:  00:00:00
  Start:  Fri May 10 05:44:11 2013   End:  Fri May 10 05:44:11 2013

GO:0006928 "cellular component movement" evidence=IGI

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0022027101 SubName- Full=Putative uncharacterized protein; (56 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	55
PF04911	54	ATP-synt_J: ATP synthase j chain; InterPro: IPR006	96.22
PF15176	102	LRR19-TM: Leucine-rich repeat family 19 TM domain	87.35

>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.22  E-value=0.00045  Score=40.55  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             hhhhcchhhhhhheeeeeeeee
Q 042378           15 WNRNWPFLVGFAITGTIITKFS   36 (55)
Q Consensus        15 ~kr~WPFlvGf~vtg~litK~s   36 (55)
                      +|-||||++|-+|+.++|.|++
T Consensus         7 ~kP~wPFf~ag~iv~ygv~k~~   28 (54)
T PF04911_consen    7 LKPMWPFFAAGAIVYYGVNKAQ   28 (54)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHH
Confidence            5779999999999999999943

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)

>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain

Probab=87.35  E-value=0.1  Score=33.90  Aligned_cols=17  Identities=47%  Similarity=1.036  Sum_probs=13.3

Q ss_pred             hhhhcchhhhhhheeee
Q 042378           15 WNRNWPFLVGFAITGTI   31 (55)
Q Consensus        15 ~kr~WPFlvGf~vtg~l   31 (55)
                      .-+.||||||+.++...
T Consensus        13 ~g~sW~~LVGVv~~al~   29 (102)
T PF15176_consen   13 GGRSWPFLVGVVVTALV   29 (102)
T ss_pred             CCcccHhHHHHHHHHHH
Confidence            36789999999877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00