Citrus Sinensis ID: 042429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDLPNLNG
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccccccccccccEEEEEEccccccEEccccEEEcccccEEEEEEEcccccEEEccccccccEEEEEEEcccccccccccccHHHHHccEEccccccccEEEccEEEEEcccEEEcccEEEEccccccccccEEEEEEEEcccccccccEEEEEccEEEEEcccccccccccccccccEEEEEEcccccccccHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEcccEEEEEcccccEEEEEEccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccccccccccccEEEEEEcccccccccccEEEEcccccEEEEEEEcccccEEEcccccccEEEEEEEEcccccccccccccHHHHHHccEccccccccEEEEEEEEEEEccEEEcccEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEEcccEEEEEccEEEEEEEEEcccEEEcHHHccccc
Coil and Loop (DISEMBL)
VNEEVERGLRQYYKFQSLTRSLPLCFQALessslkltfseelslpiftgrkitdiennplQIVVVETrssgritpanlsqPIKILMVVLdwdfpsgdhddwsqeeFESNIVKerigkqplltgdvnvtirngvapvedieftdnsswirSRKFKISAKVAQGNYHGVRICEAITEAFVVKdhrgelykkhhpqmLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCimgnklyifrgpnsiiflNPICQVVRATingqtfltrdlpnlng
Flexible Loop (DISEMBL)
VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIftgrkitdiennpLQIVVVEtrssgritpanlsqpiKILMVVLDWDFPSGDHDDWSQEEFESNIVKerigkqplltgdvnvtirngvapvedieftdnsswirsRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGElykkhhpqmledEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINgqtfltrdlpnlng
Low Complexity Region (SEG)
VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDLPNLNG
Disordered region (IsUnstruct)
********LRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDF********************RIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTR*******
Disordered Region (DISOPRED)
VNEEVERGL*************************KLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDLP****
Disordered Region (DISEMBL)
********LRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDLPNLNG
Disordered Region (DISPRO)
*****************************ESSSLKLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDLPNLNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
224133108	366	predicted protein [Populus trichocarpa]	0.990	0.822	0.636	1e-107
357521187	474	hypothetical protein MTR_8g104510 [Medic	0.993	0.637	0.601	1e-104
224121274	435	predicted protein [Populus trichocarpa]	0.990	0.691	0.616	1e-104
357521181	487	hypothetical protein MTR_8g104490 [Medic	0.993	0.620	0.594	1e-103
225455998	487	PREDICTED: uncharacterized protein LOC10	0.983	0.613	0.623	1e-102
297734237	469	unnamed protein product [Vitis vinifera]	0.983	0.637	0.623	1e-102
356529562	489	PREDICTED: uncharacterized protein LOC10	0.970	0.603	0.584	1e-99
357521183	422	hypothetical protein MTR_8g104490 [Medic	0.967	0.696	0.587	5e-99
356522779	488	PREDICTED: uncharacterized protein LOC10	0.970	0.604	0.574	6e-98
356513070	480	PREDICTED: uncharacterized protein LOC10	0.986	0.625	0.559	4e-97

>gi|224133108|ref|XP_002321484.1| predicted protein [Populus trichocarpa] gi|222868480|gb|EEF05611.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/305 (63%), Positives = 241/305 (79%), Gaps = 4/305 (1%)

Query: 1   VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPL 60
           VNEEVE  LR+     SLTRS  L  +ALE+SSL+L +S+ L LPIFTG KI D++++PL
Sbjct: 29  VNEEVEGSLRR--STCSLTRSSSLQIKALEASSLQLMYSKSLLLPIFTGSKIVDLDSSPL 86

Query: 61  QIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPL 120
           QI++V+TR   ++ P  L  P+KI +VVLD DFPS     W+ EEF+SNIVKER GK+PL
Sbjct: 87  QILLVDTRGD-QMVPTYLPHPLKIEVVVLDGDFPSNGSSKWTSEEFDSNIVKERTGKRPL 145

Query: 121 LTGD-VNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVV 179
           L GD + VT+R+G AP+ +IEFTDNSSWIRSRKF++ A+VA G+Y GV+I EAITEAFVV
Sbjct: 146 LAGDCLTVTLRDGFAPIGEIEFTDNSSWIRSRKFRLGARVAPGSYQGVKIREAITEAFVV 205

Query: 180 KDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRR 239
           KDHRGELYKKHHP ML+DEVWRLEKIG+ G F++KLTA GI TVQDFLK+S+V+ QKLRR
Sbjct: 206 KDHRGELYKKHHPPMLQDEVWRLEKIGKDGAFHRKLTAEGINTVQDFLKLSVVDRQKLRR 265

Query: 240 ILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDL 299
           ILG GMSEKMWE TIKHARTC +GN  +IFR PN  I LNPICQ+V A I+G ++  ++L
Sbjct: 266 ILGPGMSEKMWEVTIKHARTCDLGNNHFIFRRPNCTITLNPICQIVHAMIDGNSYSNKEL 325

Query: 300 PNLNG 304
            ++ G
Sbjct: 326 ASIRG 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521187|ref|XP_003630882.1| hypothetical protein MTR_8g104510 [Medicago truncatula] gi|355524904|gb|AET05358.1| hypothetical protein MTR_8g104510 [Medicago truncatula]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/306 (60%), Positives = 239/306 (78%), Gaps = 4/306 (1%)

Query: 1   VNEEVERGLRQYYK-FQSLTRSLPLCFQALESS-SLKLTFSEELSLPIFTGRKITDIENN 58
           VNEEVER +RQ Y   +S+T+S  L  + +E   SL+  F  +LSLPIFTG KI D++ N
Sbjct: 58  VNEEVERAMRQCYPPVRSITKSPSLRLEGMEEPLSLQFMFKNKLSLPIFTGSKILDMDGN 117

Query: 59  PLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFP-SGDHDDWSQEEFESNIVKERIGK 117
            + +++V+ RS+ ++ P +LS PIKI +VVLD DFP S     W+ EEF ++IVKER GK
Sbjct: 118 SISVILVD-RSNDQVVPTSLSHPIKIEIVVLDGDFPPSKKESSWTSEEFNNSIVKERTGK 176

Query: 118 QPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAF 177
           +PLLTG++N+T+R+G+AP+ DIEFTDNSSWIRSRKF+++ ++A G    VRI E +TEAF
Sbjct: 177 RPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEAF 236

Query: 178 VVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKL 237
           VVKDHRGELYKKHHP  L+DEVWRLEKIG+ G F+KKLT  GI TVQ+FLK+S+V+P +L
Sbjct: 237 VVKDHRGELYKKHHPPSLKDEVWRLEKIGKDGAFHKKLTLEGITTVQEFLKLSVVDPLRL 296

Query: 238 RRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTR 297
           R+ILG GMSEKMW+ TIKHA+TC+MGNKLY++RGP   I LN ICQ+VRA INGQT   R
Sbjct: 297 RKILGIGMSEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNR 356

Query: 298 DLPNLN 303
           D+ N++
Sbjct: 357 DICNMD 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121274|ref|XP_002318542.1| predicted protein [Populus trichocarpa] gi|222859215|gb|EEE96762.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/305 (61%), Positives = 238/305 (78%), Gaps = 4/305 (1%)

Query: 1   VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPL 60
           VNEE+E  LR+   F  LTRS  L  Q+LE SSL+L FS+ L LPIFTG KI D++++PL
Sbjct: 57  VNEEMETNLRRSTSF--LTRSPSLRIQSLEPSSLQLMFSKNLLLPIFTGSKIVDLDSSPL 114

Query: 61  QIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPL 120
           QI++V+TR   ++    L  PIKI +VVLD DFPS D+  W+ EEF SNIVKER GK+PL
Sbjct: 115 QILLVDTRGD-QVVSTYLPHPIKIEVVVLDGDFPSYDNRTWTSEEFNSNIVKERKGKRPL 173

Query: 121 LTGD-VNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVV 179
           L GD ++VT+R+G AP+ +IEFTDNSSW+RSRKF++ A+V   +Y GVRI EAITEAFVV
Sbjct: 174 LAGDCLSVTLRDGFAPIGEIEFTDNSSWVRSRKFRLGARVVPESYQGVRIREAITEAFVV 233

Query: 180 KDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRR 239
           KDHRGELYKKHHP ML+DEVWRLEKIG+ G F+KKL  + I TVQDFLK+S+V+P++LR 
Sbjct: 234 KDHRGELYKKHHPPMLQDEVWRLEKIGKDGAFHKKLATARIHTVQDFLKLSVVDPRRLRE 293

Query: 240 ILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDL 299
           ILG GMSEKMWE TIKHARTC +GNK ++FR PN  I  +PICQ+V A I+G ++ +++L
Sbjct: 294 ILGHGMSEKMWEVTIKHARTCDLGNKHFVFRRPNCTITFDPICQIVHAVIDGSSYSSKEL 353

Query: 300 PNLNG 304
           P+  G
Sbjct: 354 PSKTG 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521181|ref|XP_003630879.1| hypothetical protein MTR_8g104490 [Medicago truncatula] gi|355524901|gb|AET05355.1| hypothetical protein MTR_8g104490 [Medicago truncatula]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/306 (59%), Positives = 238/306 (77%), Gaps = 4/306 (1%)

Query: 1   VNEEVERGLRQYYK-FQSLTRSLPLCFQALESS-SLKLTFSEELSLPIFTGRKITDIENN 58
           VNEEVER +RQ Y   +S+T S  L  +A+E   S +  F ++LSLPIFTG +I D++ N
Sbjct: 58  VNEEVERAMRQCYPPVRSITNSPSLRLKAMEEPLSFQFMFKKKLSLPIFTGSRILDMDGN 117

Query: 59  PLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDD-WSQEEFESNIVKERIGK 117
            + +++V+ +S+ +I P +L  PIKI +VVLD DFP  + +  W+ EEF SNIVKER GK
Sbjct: 118 SINVILVD-KSNDQIVPTSLPHPIKIEIVVLDGDFPPSEKESSWTSEEFNSNIVKERNGK 176

Query: 118 QPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAF 177
           +PLLTG++N+T+R+G+AP+ DIEFTDNSSWIRSRKF+++ ++A G    VRI E +TE F
Sbjct: 177 RPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEPF 236

Query: 178 VVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKL 237
           VVKDHRGELYKKHHP  L DEVWRLEKIG+ G F+KKLT+ GI TVQ+FLK+S+V+P +L
Sbjct: 237 VVKDHRGELYKKHHPPSLNDEVWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPLRL 296

Query: 238 RRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTR 297
           R+ILG GMSEKMW+ TIKHA+TC+MGNKLY++RGP   I LN ICQ+VRA INGQT   R
Sbjct: 297 RKILGIGMSEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNR 356

Query: 298 DLPNLN 303
           D+ N++
Sbjct: 357 DICNMD 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455998|ref|XP_002276900.1| PREDICTED: uncharacterized protein LOC100259493 [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/303 (62%), Positives = 226/303 (74%), Gaps = 4/303 (1%)

Query: 1   VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPL 60
           VNEEVERG+R    F   TRS  L  QALE+S+L+L F++ LSLPIFTG KI   EN+PL
Sbjct: 74  VNEEVERGIRSSCTF---TRSPSLRIQALEASNLQLIFTKRLSLPIFTGTKIGYAENSPL 130

Query: 61  QIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPL 120
           Q+ +VET S  ++ P  L   IK+ +VVLD DFP GD + WS +EFE NIV+ER GK+PL
Sbjct: 131 QLHIVET-SGDQMVPTTLPYSIKVEIVVLDGDFPQGDCNTWSSKEFEDNIVRERTGKRPL 189

Query: 121 LTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVK 180
           L GDV VT+R+G+A + DIEFTDNSSWIRSRKF++ A+V  G+ H V I EAITEAF VK
Sbjct: 190 LAGDVIVTMRDGLAMIGDIEFTDNSSWIRSRKFRLGARVVPGSRHDVSIREAITEAFAVK 249

Query: 181 DHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRI 240
           DHRGELYKKHHP ML DEVWRLEKIG+ G F+KKL +  I TVQD LK+SIV+PQKLR I
Sbjct: 250 DHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLASENINTVQDLLKLSIVDPQKLRTI 309

Query: 241 LGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDLP 300
           LG GMSEKMWE  IKHAR C +G  LYI RG N  + LN ICQ+V   INGQ +  ++L 
Sbjct: 310 LGPGMSEKMWEVVIKHARNCDLGKNLYILRGYNFTVTLNAICQIVMMDINGQIYARQELS 369

Query: 301 NLN 303
           NL+
Sbjct: 370 NLD 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734237|emb|CBI15484.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/303 (62%), Positives = 226/303 (74%), Gaps = 4/303 (1%)

Query: 1   VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPL 60
           VNEEVERG+R    F   TRS  L  QALE+S+L+L F++ LSLPIFTG KI   EN+PL
Sbjct: 56  VNEEVERGIRSSCTF---TRSPSLRIQALEASNLQLIFTKRLSLPIFTGTKIGYAENSPL 112

Query: 61  QIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPL 120
           Q+ +VET S  ++ P  L   IK+ +VVLD DFP GD + WS +EFE NIV+ER GK+PL
Sbjct: 113 QLHIVET-SGDQMVPTTLPYSIKVEIVVLDGDFPQGDCNTWSSKEFEDNIVRERTGKRPL 171

Query: 121 LTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVK 180
           L GDV VT+R+G+A + DIEFTDNSSWIRSRKF++ A+V  G+ H V I EAITEAF VK
Sbjct: 172 LAGDVIVTMRDGLAMIGDIEFTDNSSWIRSRKFRLGARVVPGSRHDVSIREAITEAFAVK 231

Query: 181 DHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRI 240
           DHRGELYKKHHP ML DEVWRLEKIG+ G F+KKL +  I TVQD LK+SIV+PQKLR I
Sbjct: 232 DHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLASENINTVQDLLKLSIVDPQKLRTI 291

Query: 241 LGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDLP 300
           LG GMSEKMWE  IKHAR C +G  LYI RG N  + LN ICQ+V   INGQ +  ++L 
Sbjct: 292 LGPGMSEKMWEVVIKHARNCDLGKNLYILRGYNFTVTLNAICQIVMMDINGQIYARQELS 351

Query: 301 NLN 303
           NL+
Sbjct: 352 NLD 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529562|ref|XP_003533359.1| PREDICTED: uncharacterized protein LOC100803213 [Glycine max]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/303 (58%), Positives = 236/303 (77%), Gaps = 8/303 (2%)

Query: 1   VNEEVERGLRQYYKFQSLTRSLPLCFQALES---SSLKLTFSEELSLPIFTGRKITDIEN 57
           V EEV++ +RQ+ +  S  RS  L  QA++    S+L+L FS+ LSLPIFTG +I D++ 
Sbjct: 57  VGEEVDQAMRQWSR--SFARSPSLRLQAMDQQQPSTLQLCFSKRLSLPIFTGSRILDVDG 114

Query: 58  NPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHD-DWSQEEFESNIVKERIG 116
           NP+ IV+++ +S+G+  P +LS  IK+ +VV+D DFP  D+D DW+ EEF  +IVKER G
Sbjct: 115 NPINIVLMD-KSNGQGVPTSLSNAIKLEIVVVDGDFPLNDNDEDWTSEEFNRHIVKERNG 173

Query: 117 KQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQG-NYHGVRICEAITE 175
           K+PLL G++NV +R+G+AP  DIEFTDNSSWIR RKF+++ +V  G N  GVRI EA+TE
Sbjct: 174 KRPLLAGELNVIMRDGIAPTGDIEFTDNSSWIRCRKFRVAVRVVPGTNPGGVRIREAMTE 233

Query: 176 AFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQ 235
           AFVVKDHRGELYKKHHP ML DEVWRLEKIG+ G F++KL++ GIKTVQDFLK+++++  
Sbjct: 234 AFVVKDHRGELYKKHHPPMLHDEVWRLEKIGKDGAFHRKLSSEGIKTVQDFLKLAVIDAL 293

Query: 236 KLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFL 295
           KLR ILG GMS+KMWE TIKHA TC +G+K+YI+RGP   IFL+P+C+++RA +NG TF 
Sbjct: 294 KLRNILGMGMSDKMWEVTIKHAMTCDIGSKMYIYRGPEFTIFLDPVCKLIRADVNGHTFS 353

Query: 296 TRD 298
            RD
Sbjct: 354 NRD 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521183|ref|XP_003630880.1| hypothetical protein MTR_8g104490 [Medicago truncatula] gi|355524902|gb|AET05356.1| hypothetical protein MTR_8g104490 [Medicago truncatula]

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 175/298 (58%), Positives = 231/298 (77%), Gaps = 4/298 (1%)

Query: 9   LRQYYK-FQSLTRSLPLCFQALESS-SLKLTFSEELSLPIFTGRKITDIENNPLQIVVVE 66
           +RQ Y   +S+T S  L  +A+E   S +  F ++LSLPIFTG +I D++ N + +++V+
Sbjct: 1   MRQCYPPVRSITNSPSLRLKAMEEPLSFQFMFKKKLSLPIFTGSRILDMDGNSINVILVD 60

Query: 67  TRSSGRITPANLSQPIKILMVVLDWDFPSGDHDD-WSQEEFESNIVKERIGKQPLLTGDV 125
            +S+ +I P +L  PIKI +VVLD DFP  + +  W+ EEF SNIVKER GK+PLLTG++
Sbjct: 61  -KSNDQIVPTSLPHPIKIEIVVLDGDFPPSEKESSWTSEEFNSNIVKERNGKRPLLTGEL 119

Query: 126 NVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGE 185
           N+T+R+G+AP+ DIEFTDNSSWIRSRKF+++ ++A G    VRI E +TE FVVKDHRGE
Sbjct: 120 NLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEPFVVKDHRGE 179

Query: 186 LYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGM 245
           LYKKHHP  L DEVWRLEKIG+ G F+KKLT+ GI TVQ+FLK+S+V+P +LR+ILG GM
Sbjct: 180 LYKKHHPPSLNDEVWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPLRLRKILGIGM 239

Query: 246 SEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTRDLPNLN 303
           SEKMW+ TIKHA+TC+MGNKLY++RGP   I LN ICQ+VRA INGQT   RD+ N++
Sbjct: 240 SEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNRDICNMD 297

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522779|ref|XP_003530023.1| PREDICTED: uncharacterized protein LOC100792405 [Glycine max]

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 174/303 (57%), Positives = 234/303 (77%), Gaps = 8/303 (2%)

Query: 1   VNEEVERGLRQYYKFQSLTRSLPLCFQALES---SSLKLTFSEELSLPIFTGRKITDIEN 57
           + EEV+R +RQ+    S  RS  L  QAL+    S+L+L FS+ LSLPIFTG +I +++ 
Sbjct: 57  IGEEVDRVMRQWP--HSFARSPSLRLQALDQQQPSTLQLWFSKRLSLPIFTGSRILEVDG 114

Query: 58  NPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHD-DWSQEEFESNIVKERIG 116
            P+ IV+++ +SSG++ P +L   IK+ +VVLD DFP  D+D DW+ EEF  ++VKERIG
Sbjct: 115 KPINIVLMD-KSSGKVVPTSLPHAIKLEIVVLDGDFPPDDNDEDWTSEEFNRHVVKERIG 173

Query: 117 KQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQG-NYHGVRICEAITE 175
           K+PLL G++NV +R+G+AP+ DIEFTDNS WIR RKF+++ +VA G N  GVRI EAI+E
Sbjct: 174 KRPLLAGELNVIMRDGIAPIGDIEFTDNSCWIRCRKFRVAVRVAPGTNQGGVRIREAISE 233

Query: 176 AFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQ 235
           AF VKDHRGELYKKH+P ML DEVWRLEKIG+ G F++KL++ GIKTVQDFLK+++++  
Sbjct: 234 AFAVKDHRGELYKKHYPPMLHDEVWRLEKIGKDGAFHRKLSSEGIKTVQDFLKLAVIDTL 293

Query: 236 KLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFL 295
           KLR ILG GMS+KMWE TIKHA TC  G+K++I+RGP+  IFL+P+C+++RA  NG TF 
Sbjct: 294 KLRNILGIGMSDKMWEVTIKHAMTCDTGSKMHIYRGPDYTIFLDPVCKLIRADFNGHTFS 353

Query: 296 TRD 298
            RD
Sbjct: 354 NRD 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513070|ref|XP_003525237.1| PREDICTED: uncharacterized protein LOC100802257 [Glycine max]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 173/309 (55%), Positives = 239/309 (77%), Gaps = 9/309 (2%)

Query: 1   VNEEVERGLRQYYKFQSLTRSLPLCFQAL---ESSSLKLTFSEELSLPIFTGRKITDIEN 57
           VNEEVER +R     ++++RS  L  +A    + S+ +L FS++L +PIFTG +I DI+ 
Sbjct: 59  VNEEVERVMRHCTVPRTISRSPSLRIEAASLEKPSNYELMFSKKLLVPIFTGSRIVDIDG 118

Query: 58  NPLQIVVVETRSSGR----ITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKE 113
           NP+Q+++V+ +S G       P ++ QPIK+ +VVLD DFP+ + + W+ EEF +NIVKE
Sbjct: 119 NPIQVILVD-KSGGDGELVAVPTSVPQPIKLEIVVLDGDFPN-NKESWTTEEFNNNIVKE 176

Query: 114 RIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAI 173
           R GK+PLLTG++N+T+R+G+AP+E+IEFTDNSSWIRSRKF+++ +VA G+ H + I + +
Sbjct: 177 RTGKRPLLTGELNLTMRDGIAPIEEIEFTDNSSWIRSRKFRVAVRVAPGSNHTLPIRQGM 236

Query: 174 TEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVE 233
           TE FVVKDHRGELYKKH+P  L DEVWRLEKIG+ G F+KKL+  GI +VQDFLK+S+V+
Sbjct: 237 TEPFVVKDHRGELYKKHYPPKLNDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLSVVD 296

Query: 234 PQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQT 293
             +LR+ILG GMSEKMWE T+KHA+TC  GNK Y++RGPN  +FLN ICQ+VRA INGQ+
Sbjct: 297 VHRLRKILGVGMSEKMWEVTMKHAKTCEKGNKYYVYRGPNFSVFLNSICQLVRADINGQS 356

Query: 294 FLTRDLPNL 302
           F +R+  N+
Sbjct: 357 FPSRERSNM 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:505006222	451	SARD1 "AT1G73805" [Arabidopsis	0.960	0.647	0.572	1.4e-89
TAIR|locus:2174522	647	AT5G57580 [Arabidopsis thalian	0.970	0.455	0.467	7e-70
TAIR|locus:2054000	622	AT2G18750 [Arabidopsis thalian	0.973	0.475	0.451	1.2e-67
TAIR|locus:2117557	601	AT4G25800 [Arabidopsis thalian	0.881	0.445	0.494	1.9e-67
TAIR|locus:2126679	562	AT4G31000 [Arabidopsis thalian	0.970	0.524	0.439	1.1e-62
TAIR|locus:2061112	599	AT2G24300 [Arabidopsis thalian	0.980	0.497	0.428	6.2e-62
TAIR|locus:2148548	563	CBP60G "Cam-binding protein 60	0.967	0.522	0.361	1.1e-46

TAIR|locus:505006222 SARD1 "AT1G73805" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 174/304 (57%), Positives = 233/304 (76%)

Query:     1 VNEEVERGLRQYYKFQSLTRSLPLCFQALESSS--LKLTFSEELSLPIFTGRKITDIENN 58
             V +EVE G+ + ++   L+RS     +A E+++  LKL F + L  PIFTG KI+D++NN
Sbjct:    58 VRQEVEYGISKRFR---LSRSSSFRIEAPEATTPTLKLIFRKNLMTPIFTGSKISDVDNN 114

Query:    59 PLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQ 118
             PL+I++V+  +     P NL++PIK+ +V L  DFPSGD   W+ +EFESNI+KER GK+
Sbjct:   115 PLEIILVDDSNK----PVNLNRPIKLDIVALHGDFPSGDK--WTSDEFESNIIKERDGKR 168

Query:   119 PLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNY-HGVRICEAITEAF 177
             PLL G+V+VT+RNGVA + +I FTDNSSWIRSRKF+I AKVA+G+   GV +CEA+TEA 
Sbjct:   169 PLLAGEVSVTVRNGVATIGEIVFTDNSSWIRSRKFRIGAKVAKGSSGQGVVVCEAMTEAI 228

Query:   178 VVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKL 237
             VV+DHRGELYKKHHP MLEDEVWRLEKIG+ G F+KKL++  I TVQDFLK+S+V+  +L
Sbjct:   229 VVRDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSSRHINTVQDFLKLSVVDVDEL 288

Query:   238 RRILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSIIFLNPICQVVRATINGQTFLTR 297
             R+ILG GMS++ WE T+KHAR CI+GNKLYI RGPN  + LNPIC+V++A I+G    ++
Sbjct:   289 RQILGPGMSDRKWEVTLKHARECILGNKLYISRGPNFFMILNPICEVMKALIDGHVLSSQ 348

Query:   298 DLPN 301
             +  N
Sbjct:   349 ESLN 352

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2174522 AT5G57580 [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 142/304 (46%), Positives = 205/304 (67%)

Query:     1 VNEEVERGLRQY--YKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENN 58
             V+EE+ER L +    +    + S P   +  +   L+L F   LSLP+FTG K+   +  
Sbjct:    59 VSEELERALAKLGPARLTGSSGSSPKRIEGPDGRKLQLHFKSRLSLPLFTGGKVEGEQGA 118

Query:    59 PLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQ 118
              + +V+++  ++GR          K+ +VVL+ DF + D +DW+QEEFES++VKER GK+
Sbjct:   119 VIHVVLIDA-NTGRAVVYGPEASAKLHIVVLEGDFNTEDDEDWTQEEFESHVVKERSGKR 177

Query:   119 PLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFV 178
             PLLTG+V VT++ GV  + ++ FTDNSSWIRSRKF++  +V  G   G+RI EA TEAFV
Sbjct:   178 PLLTGEVYVTLKEGVGTLGELVFTDNSSWIRSRKFRLGLRVVSGCCDGMRIREAKTEAFV 237

Query:   179 VKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLR 238
             VKDHRGELYKKH+P  L D+VWRL+KIG+ G F+KKLTA GI TV+DFL++ + +  KLR
Sbjct:   238 VKDHRGELYKKHYPPALNDDVWRLDKIGKDGAFHKKLTAEGINTVEDFLRVMVKDSPKLR 297

Query:   239 RILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNS----IIFLNPICQVVRATINGQTF 294
              ILG+GMS KMW+A ++HA+TC+  +KLYI+   +S    ++F N I ++    I+G  +
Sbjct:   298 TILGSGMSNKMWDALVEHAKTCVQSSKLYIYYAEDSRNVGVVF-NNIYEL-SGLISGDQY 355

Query:   295 LTRD 298
              + D
Sbjct:   356 FSAD 359

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2054000 AT2G18750 [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 135/299 (45%), Positives = 197/299 (65%)

Query:     1 VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPL 60
             V+EEVER L +    +   RS P   + +   +L+L F   LS+P+FTG KI   +   +
Sbjct:    65 VSEEVERALAKLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGEQGAAI 124

Query:    61 QIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPL 120
              +V+++  ++G +         K+ +VVLD DF + D D WS EEFE ++VKER GK+PL
Sbjct:   125 HVVLLDM-TTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQGKRPL 183

Query:   121 LTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVK 180
             LTGDV VT++ GV  + ++ FTDNSSWIR RKF++  +V+ G   G+R+ EA TEAF VK
Sbjct:   184 LTGDVQVTLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEAFTVK 243

Query:   181 DHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRI 240
             DHRGELYKKH+P  L+DEVWRLEKIG+ G F+KKL  +GI  V++FL++ + + QKLR I
Sbjct:   244 DHRGELYKKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKLRTI 303

Query:   241 LGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNSI-IFLNPICQVVRATINGQTFLTRD 298
             LG+GMS +MWE   +H++TC++   LY++   +S+ +  N I +     I+G+ +   D
Sbjct:   304 LGSGMSNRMWETLAEHSKTCVLSEMLYVYYPEDSVGVVFNNIYEF-SGLISGKQYYPAD 361

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2117557 AT4G25800 [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 134/271 (49%), Positives = 187/271 (69%)

Query:     1 VNEEVERGLRQYYKFQSLTRSL--PLCFQALESSSLKLTFSEELSLPIFTGRKITDIENN 58
             V+EEVER L +    +  T S+  P      +  +L+L F   LSLP+FTG ++   +  
Sbjct:    48 VSEEVERALAKLVPTRLTTSSVFSPKRIGGPDGRNLQLHFKSRLSLPLFTGGRVEGEQGA 107

Query:    59 PLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQ 118
              + +V+++  ++GR         +K+ +VVL  DF + D +DW+QEEFES++VKER GK+
Sbjct:   108 TIHVVLIDA-NTGRPVTVGPEASLKLEVVVLGGDFNNEDDEDWTQEEFESHVVKEREGKR 166

Query:   119 PLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFV 178
             PLLTGD+ V ++ GV  + +I FTDNSSWIRSRKF++  +V  G   G+RI EA TEAF 
Sbjct:   167 PLLTGDLFVVLKEGVGTLGEIVFTDNSSWIRSRKFRLGLRVPSGYCDGIRIREAKTEAFS 226

Query:   179 VKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLR 238
             VKDHRGELYKKH+P  L DEVWRLEKIG+ G F+K+LTA+GI TV+ FL+  + +  KLR
Sbjct:   227 VKDHRGELYKKHYPPALNDEVWRLEKIGKDGAFHKRLTAAGIVTVEGFLRQLVRDSTKLR 286

Query:   239 RILGTGMSEKMWEATIKHARTCIMGNKLYIF 269
              ILG+GMS KMW+  ++HA+TC++  KLYI+
Sbjct:   287 AILGSGMSNKMWDLLVEHAKTCVLSGKLYIY 317

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2126679 AT4G31000 [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 134/305 (43%), Positives = 194/305 (63%)

Query:     1 VNEEVERGLRQYYKFQSLTRSL-PLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNP 59
             V+EEVER + +    +S +RS  P   Q L+  +L+L F   +   +FTG K+   + + 
Sbjct:    59 VSEEVERAISRLENSKSTSRSTEPNKIQGLDGRNLQLRFRTRMPPHLFTGGKVEGEQGSA 118

Query:    60 LQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQP 119
             + +V+++  ++G +         K+ +VVLD DF   D  DW++E FES  VKER GK+P
Sbjct:   119 IHVVLIDA-NTGNVIQTGEESMTKLNIVVLDGDFNDEDDKDWTREHFESFEVKEREGKRP 177

Query:   120 LLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVV 179
             +LTGD +V I+ GV  +  + FTDNSSWIRSRKF++  K A G +H   I EA TE F V
Sbjct:   178 ILTGDRHVIIKEGVGTLGKLTFTDNSSWIRSRKFRLGVKPATG-FH---IREAKTEPFAV 233

Query:   180 KDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRR 239
             KDHRGELYKKH+P +L DEVWRL+KI + G  +KKL  S I TV+DFL++ + +PQKLR 
Sbjct:   234 KDHRGELYKKHYPPVLHDEVWRLDKIAKDGALHKKLLKSNIVTVEDFLQILMKDPQKLRS 293

Query:   240 ILGTGMSEKMWEATIKHARTCIMGNKLYIF---RGPNSIIFLNPICQVVRATINGQTFLT 296
             +LG+GMS +MW+ T++HA+TC++G KLY +   +   + +  N I +      NG  FL+
Sbjct:   294 LLGSGMSNRMWDNTVEHAKTCVLGGKLYAYYTDQTHQTAVVFNHIYEFQGLIANGH-FLS 352

Query:   297 RDLPN 301
              +  N
Sbjct:   353 SESLN 357

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2061112 AT2G24300 [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 132/308 (42%), Positives = 193/308 (62%)

Query:     1 VNEEVERGLRQYYKFQSLTRSL-PLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNP 59
             V+EEVER L +    +  +RS  P   Q     +L+L F   +   +FTG K+     + 
Sbjct:    55 VSEEVERALSRLGNAKLTSRSPEPKRIQDRNGRNLQLHFRTRMPPHLFTGGKVEGERGSA 114

Query:    60 LQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQP 119
             + +V+++  ++G +         K+ +VVL+ DF   D +DW++E FES  VKER GK+P
Sbjct:   115 IHVVLIDA-NTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRP 173

Query:   120 LLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVV 179
             +LTGD  + ++ GV  + ++ FTDNSSWIRSRKF++  K A G      I EA TE F V
Sbjct:   174 ILTGDTQIVLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYGDSFCIREAKTEPFAV 233

Query:   180 KDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRR 239
             KDHRGELYKKH+P  + DEVWRL++I + G  +KKL  + I TV+DFL++ + +PQKLR 
Sbjct:   234 KDHRGELYKKHYPPAVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRN 293

Query:   240 ILGTGMSEKMWEATIKHARTCIMGNKLYIFRGPNS----IIFLNPICQVVRATINGQTFL 295
             +LG+GMS +MWE T++HA+TC++G KLY+F    +    ++F N I +      NGQ FL
Sbjct:   294 LLGSGMSNRMWENTVEHAKTCVLGGKLYVFYTDQTHATGVVF-NHIYEFRGLITNGQ-FL 351

Query:   296 TRDLPNLN 303
             +  L +LN
Sbjct:   352 S--LESLN 357

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2148548 CBP60G "Cam-binding protein 60-like G" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 111/307 (36%), Positives = 165/307 (53%)

Query:     1 VNEEVERGLRQYYKFQSLTRSLPLCFQALESSSLKLTFSEELSLPIFTGRKITDIENNPL 60
             V EE++R L+ +     ++            S LKL F       IFTG KI   + +PL
Sbjct:    53 VREEIQRSLQPFLSSSCVSMERSRSETPSSRSRLKLCFINSPPSSIFTGSKIEAEDGSPL 112

Query:    61 QIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVKERIGKQPL 120
              I +V+  ++  ++    S   ++ +V L+ DF     + W+ E F  NI+ +R GK+PL
Sbjct:   113 VIELVDATTNTLVSTGPFSSS-RVELVPLNADFTE---ESWTVEGFNRNILTQREGKRPL 168

Query:   121 LTGDVNVTIRNGVAPVE-DIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVV 179
             LTGD+ V ++NGV  +  DI F+DNSSW RSRKF++ AK+      G    EA +EAF  
Sbjct:   169 LTGDLTVMLKNGVGVITGDIAFSDNSSWTRSRKFRLGAKLT-----GDGAVEARSEAFGC 223

Query:   180 KDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRR 239
             +D RGE YKKHHP    DEVWRLEKI + G    +L    I TV+DF ++  V   +L  
Sbjct:   224 RDQRGESYKKHHPPCPSDEVWRLEKIAKDGVSATRLAERKILTVKDFRRLYTVNRNELHN 283

Query:   240 ILGTGMSEKMWEATIKHARTCIMGN-KLYIFRG--PNSIIFLNPICQVVRATINGQTFLT 296
             I+G G+S+K W   + HA  C++   + YI+    P   +  N + +++R + NG     
Sbjct:   284 IIGAGVSKKTWNTIVSHAMDCVLDETECYIYNANTPGVTLLFNSVYELIRVSFNGNDIQN 343

Query:   297 RDLPNLN 303
              D P L+
Sbjct:   344 LDQPILD 350


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      304       304   0.00098  115 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  227 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.59u 0.10s 23.69t   Elapsed:  00:00:01
  Total cpu time:  23.59u 0.10s 23.69t   Elapsed:  00:00:01
  Start:  Fri May 10 07:34:50 2013   End:  Fri May 10 07:34:51 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS;IDA

GO:0002237 "response to molecule of bacterial origin" evidence=IEP;RCA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XII0454 hypothetical protein (435 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
pfam07887	301	pfam07887, Calmodulin_bind, Calmodulin binding pro	1e-129

>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like

 Score =  370 bits (952), Expect = e-129
 Identities = 148/273 (54%), Positives = 195/273 (71%), Gaps = 6/273 (2%)

Query: 34  LKLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDF 93
           LKL F  +LSLPIFTG KI   +  P++I +V+  +      +      K+ +VVL  DF
Sbjct: 2   LKLVFLNKLSLPIFTGSKIEAEDGAPIKIALVDANT---GVTSGPLSSAKLEVVVLHGDF 58

Query: 94  PSGDHDDWSQEEFESNIVKERIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKF 153
            S D ++W++EEF  NIVKER GK+PLLTGDV VT++NGVA + +I FTDNSSW RSRKF
Sbjct: 59  NSEDDENWTEEEFNKNIVKEREGKRPLLTGDVTVTLKNGVAVIGEIFFTDNSSWTRSRKF 118

Query: 154 KISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYK 213
           ++ A+V  G+Y GVR+ EA+TE+FVVKDHRGELYKKHHP  LEDEVWRLEKIG+ G F+K
Sbjct: 119 RLGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHPPSLEDEVWRLEKIGKDGAFHK 178

Query: 214 KLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFR--- 270
           +LTASGI TV+DFL++   +P KLR+ILG+GMS KMWE TI HA+TC++G+K YI+R   
Sbjct: 179 RLTASGINTVKDFLRLLHRDPNKLRQILGSGMSNKMWETTISHAKTCVLGDKCYIYRPAS 238

Query: 271 GPNSIIFLNPICQVVRATINGQTFLTRDLPNLN 303
             N  +F N + ++V  + +G      +L  L 
Sbjct: 239 EKNVGLFFNSVYELVGVSFDGSYVPANNLSELQ 271

The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members , are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
PF07887	299	Calmodulin_bind: Calmodulin binding protein-like;	100.0
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	89.92
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	87.68
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	87.1
PRK04301	317	radA DNA repair and recombination protein RadA; Va	84.87
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	82.78
PF14520	60	HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU	82.42

>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species

Probab=100.00  E-value=3.3e-117  Score=835.03  Aligned_cols=267  Identities=54%  Similarity=0.928  Sum_probs=262.9

Q ss_pred             ceEEEEccCCCCCcccCCceeecCCCCeEEEEEEcCCCCeeecCCCCCccEEEEEEEcCCCCCCCCCCCCHHHHhhcccc
Q 042429           33 SLKLTFSEELSLPIFTGRKITDIENNPLQIVVVETRSSGRITPANLSQPIKILMVVLDWDFPSGDHDDWSQEEFESNIVK  112 (304)
Q Consensus        33 ~~~L~F~n~l~~pifT~~~I~a~~g~~I~V~l~D~~t~~~iv~~g~~ss~kveIvVLdGdF~~~~~e~WT~eeF~~~Iv~  112 (304)
                      +|||+|+|+|++|||||++|+|+||+||+|+|+|++|+   |++||+||+|||||||||||+.+++++||+|||+++||+
T Consensus         1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~~~---v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~   77 (299)
T PF07887_consen    1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDANTG---VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVK   77 (299)
T ss_pred             CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECCCC---ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEee
Confidence            58999999999999999999999999999999998776   999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccccEEEEecCceeecCCeEEecCCccccCCceEEEEEeecCCCCceeeeeeeecceEEeecCCcccccCCC
Q 042429          113 ERIGKQPLLTGDVNVTIRNGVAPVEDIEFTDNSSWIRSRKFKISAKVAQGNYHGVRICEAITEAFVVKDHRGELYKKHHP  192 (304)
Q Consensus       113 ~R~Gk~pLL~Gd~~v~L~~G~a~l~di~FtdnSs~~rsrkFRLgarv~~~~~~g~rI~Eavse~FvVkd~Rge~~kKh~p  192 (304)
                      +|+||+|||+|+++|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+||||||
T Consensus        78 ~r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~p  157 (299)
T PF07887_consen   78 EREGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYP  157 (299)
T ss_pred             cCCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccCCCceEEEe--
Q 042429          193 QMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMGNKLYIFR--  270 (304)
Q Consensus       193 P~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl~~k~y~y~--  270 (304)
                      |+|+|||||||+|||+|+|||+|+++||+||+|||+++++||++||+|||+|||++||++|++|||||++++++|+|+  
T Consensus       158 P~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCvl~~~~y~y~~~  237 (299)
T PF07887_consen  158 PSLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCVLGDKLYVYYDE  237 (299)
T ss_pred             CCCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCcEEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cCcEEEEEccceeEeEeEECCEEeeCCCCCCC
Q 042429          271 GPNSIIFLNPICQVVRATINGQTFLTRDLPNL  302 (304)
Q Consensus       271 ~~~~~l~FN~i~~lvga~~~g~~~~~~~l~~~  302 (304)
                      ++|++|+||||||||||+|+|||++.++|+++
T Consensus       238 ~~nv~l~FN~i~~lvga~~~g~y~s~d~L~~~  269 (299)
T PF07887_consen  238 EQNVGLFFNCIYELVGAIFGGQYVSLDNLSSA  269 (299)
T ss_pred             CCceEEEEcchhhEEeEEECCEEEehHHcCHH
Confidence            67999999999999999999999999999986

Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=89.92  E-value=0.37  Score=46.53  Aligned_cols=48  Identities=25%  Similarity=0.266  Sum_probs=42.4

Q ss_pred             hhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccCC
Q 042429          211 FYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMG  263 (304)
Q Consensus       211 ~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl~  263 (304)
                      .-++|+++||.||+||+..   +|..|.+++  ++|...++.+..||.+|...
T Consensus        13 ~~~~l~~~g~~t~~~~~~~---~~~~L~~i~--~ls~~~~~~~~~~~~~~~~~   60 (316)
T TIGR02239        13 DIKKLQEAGLHTVESVAYA---PKKQLLEIK--GISEAKADKILAEAAKLVPM   60 (316)
T ss_pred             HHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence            3488999999999999865   899999997  78999999999999988653

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=87.68  E-value=0.6  Score=45.16  Aligned_cols=49  Identities=29%  Similarity=0.289  Sum_probs=42.7

Q ss_pred             hhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccCC
Q 042429          210 TFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMG  263 (304)
Q Consensus       210 ~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl~  263 (304)
                      ..-++|+++||.||+||+..   ++..|.++.  |+|...++.+++.|+.+...
T Consensus        12 ~~~~~L~~~g~~t~~~~~~~---~~~~L~~~~--gls~~~~~~i~~~~~~~~~~   60 (313)
T TIGR02238        12 ADIKKLKSAGICTVNGVIMT---TRRALCKIK--GLSEAKVDKIKEAASKIINP   60 (313)
T ss_pred             HHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHhhhcc
Confidence            34589999999999998765   789999996  78999999999999988654

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=87.10  E-value=0.75  Score=45.21  Aligned_cols=60  Identities=27%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             eeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccCC
Q 042429          199 VWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMG  263 (304)
Q Consensus       199 VwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl~  263 (304)
                      +.+|+.-|-.-..-++|+++||.||+||+.+   ++..|.+++  ++|....+.+++||.+|...
T Consensus        28 ~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~---~~~~L~~i~--~is~~~~~~~~~~~~~~~~~   87 (342)
T PLN03186         28 IEQLQASGIAALDIKKLKDAGIHTVESLAYA---PKKDLLQIK--GISEAKVEKILEAASKLVPL   87 (342)
T ss_pred             HHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhccc
Confidence            4444443333334488999999999999865   788999997  78999999999999888654

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=84.87  E-value=0.67  Score=44.19  Aligned_cols=57  Identities=25%  Similarity=0.354  Sum_probs=44.8

Q ss_pred             ceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 042429          198 EVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCI  261 (304)
Q Consensus       198 eVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCv  261 (304)
                      ++..|.+||+  ...++|.++||.|++|++.   .+++.|.+++  |++.+.++.+.+-|+.+.
T Consensus         7 ~l~~l~gIg~--~~a~~L~~~Gi~t~~dl~~---~~~~~L~~~~--g~~~~~a~~l~~~a~~~~   63 (317)
T PRK04301          7 DLEDLPGVGP--ATAEKLREAGYDTVEAIAV---ASPKELSEAA--GIGESTAAKIIEAAREAA   63 (317)
T ss_pred             cHhhcCCCCH--HHHHHHHHcCCCCHHHHHc---CCHHHHHHhc--CCCHHHHHHHHHHHHHhh
Confidence            3445556665  3458999999999999965   4899999998  678888998888887643

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=82.78  E-value=1.1  Score=44.21  Aligned_cols=60  Identities=23%  Similarity=0.248  Sum_probs=47.1

Q ss_pred             ceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 042429          198 EVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIM  262 (304)
Q Consensus       198 eVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl  262 (304)
                      ++..|+.-|-.-..-++|.++||.||+|++..   ++..|-++.  |+|....+.+++.|+..+.
T Consensus        30 ~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~---~~~~L~~~~--g~s~~~~~ki~~~a~~~~~   89 (344)
T PLN03187         30 SIDKLISQGINAGDVKKLQDAGIYTCNGLMMH---TKKNLTGIK--GLSEAKVDKICEAAEKLLN   89 (344)
T ss_pred             CHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Confidence            35566553333345599999999999998764   788899985  7999999999999987764

>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A

Probab=82.42  E-value=1.1  Score=32.79  Aligned_cols=51  Identities=37%  Similarity=0.561  Sum_probs=40.1

Q ss_pred             eeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcc
Q 042429          202 LEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHART  259 (304)
Q Consensus       202 Le~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAkt  259 (304)
                      +.+||+.  ..++|.++||.|++|+..+   +++.|.++  .|++.+.=+.+++.|+.
T Consensus        10 I~Gig~~--~a~~L~~~G~~t~~~l~~a---~~~~L~~i--~Gig~~~a~~i~~~~~~   60 (60)
T PF14520_consen   10 IPGIGPK--RAEKLYEAGIKTLEDLANA---DPEELAEI--PGIGEKTAEKIIEAARE   60 (60)
T ss_dssp             STTCHHH--HHHHHHHTTCSSHHHHHTS---HHHHHHTS--TTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHH--HHHHHHhcCCCcHHHHHcC---CHHHHhcC--CCCCHHHHHHHHHHHhC
Confidence            4455554  3378999999999998764   88899997  47899999999988863

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	93.3
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	90.4

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=93.30  E-value=0.017  Score=43.36  Aligned_cols=61  Identities=30%  Similarity=0.416  Sum_probs=50.2

Q ss_pred             CCCceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcc-ccC
Q 042429          195 LEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHART-CIM  262 (304)
Q Consensus       195 L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAkt-Cvl  262 (304)
                      +.|++-.|++|+..-+  ++|.++||+||+|+..+   +++.|-.|.  |+|...=+.++.-|+. |-+
T Consensus         5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~   66 (70)
T 1wcn_A            5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWF   66 (70)
T ss_dssp             CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCc
Confidence            4567778887776544  89999999999998654   788899886  7899999999999998 654

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=90.40  E-value=0.26  Score=38.21  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             hchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHH
Q 042429          212 YKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIK  255 (304)
Q Consensus       212 hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~  255 (304)
                      -++|.+++|.||+||+.   .|+.+|.+++|  +|-+.=-.+..
T Consensus        17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~--ls~~~v~~l~r   55 (83)
T 2kz3_A           17 IQLLRSHRIKTVVDLVS---ADLEEVAQKCG--LSYKALVALRR   55 (83)
T ss_dssp             HHHHHHTTCCCHHHHTT---SCHHHHHHHHT--CCHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHh---CCHHHHHHHhC--CCHHHHHHHHH
Confidence            47899999999999975   69999999984  56554444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d1jx4a2	240	e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul	0.001
d1zeta2	273	e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom	0.001

>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DinB homolog (DBH)
species: Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 163 NYHGVRICEAITEAFVVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKT 222
           N    +I   + +   +K    E  K+   ++   +V      G      +KL   GI  
Sbjct: 147 NKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVP-----GIGNITAEKLKKLGINK 201

Query: 223 VQDFLKMSIVEPQKLRRILGTGMSEKMWE 251
           + D L +      KL+ ++G   ++ +  
Sbjct: 202 LVDTLSIE---FDKLKGMIGEAKAKYLIS 227

>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DNA polymerase iota
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 180 KDHRGELYKKHHPQMLEDEVWRLEKI-GRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLR 238
           K ++  +      Q L   +  +++I G      K L A GI +V+D    S   P+ L 
Sbjct: 188 KPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFS---PKILE 244

Query: 239 RILGTGMSEKMWE 251
           + LG  +++++ +
Sbjct: 245 KELGISVAQRIQK 257

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	92.32
d2i1qa1	60	DNA repair protein Rad51, N-terminal domain {Archa	81.1

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.32  E-value=0.021  Score=40.51  Aligned_cols=52  Identities=25%  Similarity=0.310  Sum_probs=42.9

Q ss_pred             eecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 042429          204 KIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIM  262 (304)
Q Consensus       204 ~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl  262 (304)
                      +||...+  ++|.++|++||++..   +..++.|-++  .|++.+.=+.+++-|+.++.
T Consensus        10 Gig~~~~--~kL~~aG~~Tve~ia---~~t~~~L~~i--~Gi~e~~a~KIi~~A~k~~~   61 (64)
T d1szpa1          10 GITMADV--KKLRESGLHTAEAVA---YAPRKDLLEI--KGISEAKADKLLNEAARLVP   61 (64)
T ss_dssp             TCCHHHH--HHHHTTSCCSHHHHH---HSCSHHHHTS--TTCCHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHH--HHHHHcCCCcHHHHH---hCCHHHHHHc--CCCCHHHHHHHHHHHHHHcC
Confidence            5665444  899999999999975   4677888888  48999999999999998764

>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=81.10  E-value=0.28  Score=33.71  Aligned_cols=52  Identities=25%  Similarity=0.263  Sum_probs=41.2

Q ss_pred             eeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 042429          203 EKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCI  261 (304)
Q Consensus       203 e~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCv  261 (304)
                      .+||.  +..++|.++|+.||++..   .-+++.|.++  .|++.+.=+.+++.|+++.
T Consensus         5 pGIG~--~~a~~L~~~G~~tv~~l~---~a~~eeL~~i--~Gi~~~~A~~i~~~ar~~~   56 (60)
T d2i1qa1           5 PGVGP--STAEKLVEAGYIDFMKIA---TATVGELTDI--EGISEKAAAKMIMGARDLC   56 (60)
T ss_dssp             TTCCH--HHHHHHHHHTCCSHHHHH---TCCHHHHHTS--TTCCHHHHHHHHHHHHHHT
T ss_pred             CCCCH--HHHHHHHHccCCCHHHHH---hCCHHHHHHC--CCCCHHHHHHHHHHHHHHc
Confidence            34444  345899999999998754   5689999997  4789999999999998653