Citrus Sinensis ID: 042455

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY
Secondary Structure (PSIPRED)
ccccccccccccHHHHHccccccccEEEEccccccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHccccccccEEEEEcccccccHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEEcHccHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEEccccccc
Coil and Loop (DISEMBL)
rkgpsefsasstaEEVTQGIDAAGVTAIVTGassgigaeTTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILInkagicgtpfmlskdniELHFATNHLGAFY
Flexible Loop (DISEMBL)
rkgpsefsasstaEEVTQGIDAAGVTAIVTGAssgigaetTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY
Low Complexity Region (SEG)
RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY
Disordered region (IsUnstruct)
******************GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLG***
Disordered Region (DISOPRED)
****SEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY
Disordered Region (DISEMBL)
****************TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY
Disordered Region (DISPRO)
*****************QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q6RVV4	316	Short-chain dehydrogenase	N/A	no	0.992	0.433	0.715	2e-49
A2RVM0	322	Short-chain dehydrogenase	no	no	0.985	0.422	0.705	2e-49
Q5F389	414	WW domain-containing oxid	yes	no	0.971	0.323	0.455	9e-28
Q9NZC7	414	WW domain-containing oxid	yes	no	0.956	0.318	0.454	3e-26
Q5R9W5	414	WW domain-containing oxid	yes	no	0.956	0.318	0.446	2e-25
Q91WL8	414	WW domain-containing oxid	yes	no	0.956	0.318	0.439	7e-25
Q803A8	412	WW domain-containing oxid	yes	no	0.971	0.325	0.425	1e-24
Q8BYK4	316	Retinol dehydrogenase 12	no	no	0.884	0.386	0.401	1e-18
Q9VLU5	409	WW domain-containing oxid	no	no	0.956	0.322	0.380	7e-18
Q9QYF1	316	Retinol dehydrogenase 11	no	no	0.884	0.386	0.401	8e-18

>sp|Q6RVV4|TIC32_PEA Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 109/137 (79%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           +KG S FS SSTAE+VT GIDA G+TAIVTGASSGIGAETTRVLALRG HVIM  RNM A
Sbjct: 7   KKGVSGFSGSSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVA 66

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
            +DVK  I+   P+AKVD +ELDLSSL SV+KFAS+F +   PLNILIN AGI   PF L
Sbjct: 67  AKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKL 126

Query: 121 SKDNIELHFATNHLGAF 137
           SKDNIEL FATNH+G F
Sbjct: 127 SKDNIELQFATNHIGHF 143

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|A2RVM0|TIC32_ARATH Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1

 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 108/136 (79%)

Query: 2   KGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG 61
           KG S FS+ STAEEVT G+D  G+TAIVTGASSGIG ET RVL+LRGVHV+MA RN  +G
Sbjct: 7   KGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSG 66

Query: 62  RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLS 121
             VK  IV Q P AK+DVMELDLSS+ SVRKFAS++ +  LPLN+LIN AGI   PFMLS
Sbjct: 67  AKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLS 126

Query: 122 KDNIELHFATNHLGAF 137
           KDNIEL FATNHLG F
Sbjct: 127 KDNIELQFATNHLGHF 142

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 87/134 (64%)

Query: 5   SEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV 64
            ++  +STA E+ QG D +G   I+TGA+SGIG ET +  AL G +VI+A RNM+ G D 
Sbjct: 105 QKYDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDA 164

Query: 65  KVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDN 124
              I+ +   AKV+ M LDL+SL SV+ FA  F ++ +PL+IL+  A I G+ + L++D 
Sbjct: 165 VQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDG 224

Query: 125 IELHFATNHLGAFY 138
           +E  F  NHLG FY
Sbjct: 225 LESTFQVNHLGHFY 238

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 81/132 (61%)

Query: 7   FSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV 66
           +  S+TA E+ QG D  G   +VTGA+SGIG ET +  AL G HVI+A RNMA   +   
Sbjct: 107 YDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVS 166

Query: 67  AIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIE 126
            I+ +   AKV+ M LDL+ L SV+ FA  F A+ +PL++L+  A     P+ L+KD +E
Sbjct: 167 RILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLE 226

Query: 127 LHFATNHLGAFY 138
             F  NHLG FY
Sbjct: 227 TTFQVNHLGHFY 238

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. Required for normal bone development (By similarity). May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 81/132 (61%)

Query: 7   FSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV 66
           +  S+TA E+ QG D  G   +VTGA+SGIG ET +  AL G HVI+A RNMA   +   
Sbjct: 107 YDGSTTALEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVS 166

Query: 67  AIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIE 126
            I+ +   AKV+ + LDL+ L SV+ FA  F A+ +PL++L+  A     P+ L+KD +E
Sbjct: 167 RILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLE 226

Query: 127 LHFATNHLGAFY 138
             F  NHLG FY
Sbjct: 227 TTFQVNHLGHFY 238

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 81/132 (61%)

Query: 7   FSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV 66
           +  S+TA E+ QG D  G   +VTGA+SGIG ET +  AL G HVI+A RN++   +   
Sbjct: 107 YDGSTTAMEILQGRDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVS 166

Query: 67  AIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIE 126
            I+ +   AKV+ M LDL+ L SV+ FA  F A+ + L++L+  AG    P+ L+KD +E
Sbjct: 167 RILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLE 226

Query: 127 LHFATNHLGAFY 138
             F  NHLG FY
Sbjct: 227 TTFQVNHLGHFY 238

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm (By similarity). May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q803A8|WWOX_DANRE WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 79/134 (58%)

Query: 4   PSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD 63
           P  +  ++ A E+  G D +    IVTGA+SGIG ET R  AL G HVI+A RN +    
Sbjct: 101 PKRYDGNTGALEILHGQDLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASK 160

Query: 64  VKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKD 123
               I+ +   A+V+V+ LDL+SL SVR+FA  F A  LPL++L+  A +C  P+ L++D
Sbjct: 161 AASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTED 220

Query: 124 NIELHFATNHLGAF 137
             E  F   HLG F
Sbjct: 221 GFESTFQICHLGHF 234

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 65/122 (53%)

Query: 16  VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA 75
            T  +   G   ++TGA++GIG ET R LA RG  V +A R++  G      I      +
Sbjct: 31  CTTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNS 90

Query: 76  KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLG 135
           +V V +LDLS   S+R FA  F A    L+ILIN AG+   P+  + D  E HF  NHLG
Sbjct: 91  QVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLG 150

Query: 136 AF 137
            F
Sbjct: 151 HF 152

Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VLU5|WWOX_DROME WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 7   FSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV 66
           F + STA +V  G D  G TA++TGA+ GIG ET R LA  G  +I A RN ++      
Sbjct: 104 FDSCSTALQVLHGKDLHGRTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIE 163

Query: 67  AIVMQNPAA--KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDN 124
            I  + PAA  +     LDLSSL SV++F  +       ++ LI  AG+   P+  + D 
Sbjct: 164 RIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDG 223

Query: 125 IELHFATNHLGAFY 138
           +E  F  +HL  FY
Sbjct: 224 LETTFQVSHLSHFY 237

Putative oxidoreductase. May control genotoxic stress-induced cell death. May play a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. May play a role in Wnt signaling.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 67/122 (54%)

Query: 16  VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA 75
            T  +   G  AIVTGA++GIG ET + LA RG  V +A R++  G      I      +
Sbjct: 30  CTSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNS 89

Query: 76  KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLG 135
           +V V +LDL+   S+R FA DF A    L++LIN AG+   P+  + D  E+H   NHLG
Sbjct: 90  QVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLG 149

Query: 136 AF 137
            F
Sbjct: 150 HF 151

Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent all-trans-retinal reductase. Also involved in the metabolism of short-chain aldehydes.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
225464515	313	PREDICTED: short-chain dehydrogenase TIC	0.992	0.437	0.766	3e-54
147792550	231	hypothetical protein VITISV_040853 [Viti	0.992	0.593	0.751	6e-53
449456311	319	PREDICTED: short-chain dehydrogenase TIC	0.992	0.429	0.729	2e-52
449524040	252	PREDICTED: short-chain dehydrogenase TIC	0.992	0.543	0.737	2e-52
449528313	319	PREDICTED: short-chain dehydrogenase TIC	0.992	0.429	0.729	2e-52
359490491	313	PREDICTED: short-chain dehydrogenase TIC	0.985	0.434	0.773	4e-52
449456313	313	PREDICTED: short-chain dehydrogenase TIC	0.992	0.437	0.729	7e-52
388493540	315	unknown [Lotus japonicus]	0.985	0.431	0.727	7e-52
388510126	313	unknown [Lotus japonicus]	0.992	0.437	0.729	9e-52
225464511	306	PREDICTED: short-chain dehydrogenase TIC	0.985	0.444	0.766	2e-51

>gi|225464515|ref|XP_002270104.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera] gi|302143828|emb|CBI22689.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 117/137 (85%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           RKGPS FSASSTAEEVTQGID  G+TAIVTGASSGIG ETTRVLALRGVHV+M  RNM+A
Sbjct: 6   RKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGVRNMSA 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           G++VK AIV + P AKVD MELDLSS+ASVRKFAS++ +  LPLNILIN AGI   P+ML
Sbjct: 66  GKEVKEAIVKEIPTAKVDAMELDLSSMASVRKFASEYNSSGLPLNILINNAGIMAVPYML 125

Query: 121 SKDNIELHFATNHLGAF 137
           SKDNIE+ FATNHLG F
Sbjct: 126 SKDNIEMQFATNHLGHF 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792550|emb|CAN65621.1| hypothetical protein VITISV_040853 [Vitis vinifera]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/137 (75%), Positives = 116/137 (84%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           RKG S FS+SSTAEEVTQGID  G+TAIVTGASSGIG ETTRVLALRGVHV+M  RNM+A
Sbjct: 6   RKGASGFSSSSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGVRNMSA 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           G++VK AIV + P AKVD MELDLSS+ASVRKFAS++ +  LPLNILIN AGI   P+ML
Sbjct: 66  GKEVKEAIVKEIPTAKVDAMELDLSSMASVRKFASEYNSSGLPLNILINNAGIMAVPYML 125

Query: 121 SKDNIELHFATNHLGAF 137
           SKDNIE+ FATNHLG F
Sbjct: 126 SKDNIEMQFATNHLGHF 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456311|ref|XP_004145893.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis sativus]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 116/137 (84%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           RKGPS FSASSTAEEVTQGI+  G+TAIVTGASSGIG ET RVLALRGVHV+MA RN+A 
Sbjct: 6   RKGPSGFSASSTAEEVTQGINGTGLTAIVTGASSGIGTETARVLALRGVHVVMAVRNVAT 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           GR+V+ AI+ +NP AKVD MELDLSS+ASVR FAS+F +  LPLNIL+N AG+  +PF+L
Sbjct: 66  GREVQEAIIKENPTAKVDTMELDLSSMASVRNFASNFKSSGLPLNILVNNAGVMASPFLL 125

Query: 121 SKDNIELHFATNHLGAF 137
           SKD IEL FATNH+G F
Sbjct: 126 SKDKIELQFATNHVGHF 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524040|ref|XP_004169031.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis sativus]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 115/137 (83%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           RKGPS FS+SSTAEEVT GID  G+TAIVTGASSGIG+ET RVLALRGVHVIM  RN+ A
Sbjct: 6   RKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNLEA 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           GR+V+  IV +NP+AK+D MELDLSS+ASVRKFASD+ +   PLNILIN AGI  TPF L
Sbjct: 66  GRNVRETIVKENPSAKIDAMELDLSSMASVRKFASDYQSSGFPLNILINNAGIMATPFGL 125

Query: 121 SKDNIELHFATNHLGAF 137
           SKDNIE+ FATNH+G F
Sbjct: 126 SKDNIEVQFATNHIGHF 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528313|ref|XP_004171149.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis sativus]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 116/137 (84%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           RKGPS FSASSTAEEVTQGI+  G+TAIVTGASSGIG ET RVLALRGVHV+MA RN+A 
Sbjct: 6   RKGPSGFSASSTAEEVTQGINGTGLTAIVTGASSGIGTETARVLALRGVHVVMAVRNVAT 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           GR+V+ AI+ +NP AKVD MELDLSS+ASVR FAS+F +  LPLNIL+N AG+  +PF+L
Sbjct: 66  GREVQEAIIKENPTAKVDTMELDLSSMASVRNFASNFKSSGLPLNILVNNAGVMASPFLL 125

Query: 121 SKDNIELHFATNHLGAF 137
           SKD IEL FATNH+G F
Sbjct: 126 SKDKIELQFATNHVGHF 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490491|ref|XP_003634099.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Vitis vinifera] gi|302143829|emb|CBI22690.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 116/137 (84%), Gaps = 1/137 (0%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           RKG S FS SSTAEEVTQGID  G+TAIVTGASSGIG ETTRVLALRGVHV+M  RNMAA
Sbjct: 6   RKGASGFSGSSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGVRNMAA 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           G++VK AIV + P AKVDVMELDLSS+ASVRKFAS+F +  LPLNILIN AG  G P+ML
Sbjct: 66  GQEVKEAIVKEIPTAKVDVMELDLSSMASVRKFASEFNSSGLPLNILINNAGTTG-PYML 124

Query: 121 SKDNIELHFATNHLGAF 137
           SKDNIE+ FATNHLG F
Sbjct: 125 SKDNIEMLFATNHLGHF 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456313|ref|XP_004145894.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis sativus]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 114/137 (83%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           RKGPS FS+SSTAEEVT GID  G+TAIVTGASSGIG+ET RVLALRGVHVIM  RN+ A
Sbjct: 6   RKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNLEA 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           GR+V+  IV +NP+AK+D MELDLSS+ SVRKFASD+ +   PLNILIN AGI  TPF L
Sbjct: 66  GRNVRETIVKENPSAKIDAMELDLSSMVSVRKFASDYQSSGFPLNILINNAGIMATPFGL 125

Query: 121 SKDNIELHFATNHLGAF 137
           SKDNIE+ FATNH+G F
Sbjct: 126 SKDNIEVQFATNHIGHF 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493540|gb|AFK34836.1| unknown [Lotus japonicus]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 117/136 (86%)

Query: 2   KGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG 61
           KGPS FSASSTA++VTQGID  G+TAI+TGASSG+G ETTR+LALRGVHV+MA RN++ G
Sbjct: 7   KGPSGFSASSTADQVTQGIDGTGLTAIITGASSGLGLETTRILALRGVHVVMAVRNVSTG 66

Query: 62  RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLS 121
            DVK  ++ + PAAK+DVMELDLSS+ASVRKFA+DF +  LPLNILIN AG+  TPFMLS
Sbjct: 67  MDVKETMLKEIPAAKIDVMELDLSSMASVRKFAADFNSSGLPLNILINNAGVMATPFMLS 126

Query: 122 KDNIELHFATNHLGAF 137
           +DNIEL FATNHLG F
Sbjct: 127 QDNIELQFATNHLGHF 142

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510126|gb|AFK43129.1| unknown [Lotus japonicus]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 114/137 (83%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           +KGPS FS+SSTAE+VTQGID  G+TA+VTGASSGIG ETTRVLA RGVHVIM  RN AA
Sbjct: 6   KKGPSGFSSSSTAEQVTQGIDGTGLTAVVTGASSGIGTETTRVLAKRGVHVIMGVRNTAA 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           G+DVK  I+ +NP+AKVD MELDLSS+ SV+KFAS++ +  LPLNILIN AGI   PFML
Sbjct: 66  GKDVKETILKENPSAKVDAMELDLSSMESVKKFASEYKSSGLPLNILINNAGIMACPFML 125

Query: 121 SKDNIELHFATNHLGAF 137
           SKDN EL FATNHLG F
Sbjct: 126 SKDNHELQFATNHLGHF 142

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464511|ref|XP_002270039.1| PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Vitis vinifera]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 115/137 (83%), Gaps = 1/137 (0%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
           RKG S FS SSTAEEVTQGID  G+TAIVTGASSGIG ETTRVLALRGVHV+M  RNMAA
Sbjct: 6   RKGASGFSGSSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGVRNMAA 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
           G++VK AIV + P AKVDVMELDLSS+ASVRKFAS+F +  LPLNILIN AG  G P+ML
Sbjct: 66  GQEVKEAIVKEIPTAKVDVMELDLSSMASVRKFASEFNSSGLPLNILINNAGTTG-PYML 124

Query: 121 SKDNIELHFATNHLGAF 137
           SKDNIE+ FATNHLG  
Sbjct: 125 SKDNIEMLFATNHLGTL 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2117969	322	Tic32-IVa "translocon at the i	0.985	0.422	0.705	2.4e-44
TAIR|locus:2123066	317	AT4G11410 [Arabidopsis thalian	0.985	0.429	0.691	2.8e-43
TAIR|locus:2181778	331	AT5G02540 [Arabidopsis thalian	0.992	0.413	0.554	1e-36
TAIR|locus:2040676	321	AT2G37540 [Arabidopsis thalian	0.992	0.426	0.547	6.5e-35
TAIR|locus:2134971	332	AT4G24050 [Arabidopsis thalian	0.978	0.406	0.525	4.2e-31
TAIR|locus:2019474	334	AT1G64590 [Arabidopsis thalian	0.978	0.404	0.511	1.3e-29
TAIR|locus:2170071	339	AT5G50130 [Arabidopsis thalian	0.978	0.398	0.518	1.6e-29
UNIPROTKB|E1C8R5	390	WWOX "WW domain-containing oxi	0.963	0.341	0.458	8.4e-26
UNIPROTKB|F1NXW7	414	WWOX "WW domain-containing oxi	0.963	0.321	0.458	8.4e-26
UNIPROTKB|Q5F389	414	WWOX "WW domain-containing oxi	0.963	0.321	0.458	8.4e-26

TAIR|locus:2117969 Tic32-IVa "translocon at the inner envelope membrane of chloroplasts 32-IVa" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 96/136 (70%), Positives = 108/136 (79%)

Query:     2 KGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG 61
             KG S FS+ STAEEVT G+D  G+TAIVTGASSGIG ET RVL+LRGVHV+MA RN  +G
Sbjct:     7 KGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSG 66

Query:    62 RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLS 121
               VK  IV Q P AK+DVMELDLSS+ SVRKFAS++ +  LPLN+LIN AGI   PFMLS
Sbjct:    67 AKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLS 126

Query:   122 KDNIELHFATNHLGAF 137
             KDNIEL FATNHLG F
Sbjct:   127 KDNIELQFATNHLGHF 142

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2123066 AT4G11410 [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 94/136 (69%), Positives = 108/136 (79%)

Query:     2 KGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG 61
             KG S FSA STAEEVT GID  G+TAIVTGASSGIG ETTRVLALRGVHV+MA RN  +G
Sbjct:     7 KGASGFSARSTAEEVTHGIDGTGLTAIVTGASSGIGEETTRVLALRGVHVVMAVRNTDSG 66

Query:    62 RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLS 121
               V+  I+ + P AK+DVM+LDLSS+ASVR FAS++ +  LPLN+LIN AGI   PF+LS
Sbjct:    67 NQVRDKILKEIPQAKIDVMKLDLSSMASVRSFASEYQSLDLPLNLLINNAGIMACPFLLS 126

Query:   122 KDNIELHFATNHLGAF 137
              DNIEL FATNHLG F
Sbjct:   127 SDNIELQFATNHLGHF 142

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2181778 AT5G02540 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 76/137 (55%), Positives = 100/137 (72%)

Query:     1 RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
             R+GPS F ++STAEEVTQGIDA  +TAI+TG + GIG ET RVL+ RG HV++  RNM A
Sbjct:    10 RRGPSGFGSASTAEEVTQGIDATNLTAIITGGTGGIGMETARVLSKRGAHVVIGARNMGA 69

Query:    61 GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
               + K  I+ QN  A+V +++LDLSS+ S++ F  +F A  LPLN+LIN AG+   P+ L
Sbjct:    70 AENAKTEILRQNANARVTLLQLDLSSIKSIKAFVREFHALHLPLNLLINNAGVMFCPYQL 129

Query:   121 SKDNIELHFATNHLGAF 137
             S+D IEL FATNH+G F
Sbjct:   130 SEDGIELQFATNHIGHF 146

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2040676 AT2G37540 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 75/137 (54%), Positives = 98/137 (71%)

Query:     1 RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
             +KG S F ++STAE+VTQ IDA+ +TAI+TG +SGIG E  RVLA+RG HVI+A RN  A
Sbjct:    10 KKGKSGFGSASTAEDVTQAIDASHLTAIITGGTSGIGLEAARVLAMRGAHVIIAARNPKA 69

Query:    61 GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
               + K  I+  NP A+VD +++D+SS+ SVR F   F A  +PLNILIN AG+   PF L
Sbjct:    70 ANESKEMILQMNPNARVDYLQIDVSSIKSVRSFVDQFLALNVPLNILINNAGVMFCPFKL 129

Query:   121 SKDNIELHFATNHLGAF 137
             ++D IE  FATNH+G F
Sbjct:   130 TEDGIESQFATNHIGHF 146

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IEP

TAIR|locus:2134971 AT4G24050 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 71/135 (52%), Positives = 92/135 (68%)

Query:     3 GPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR 62
             G S F + STAEEVT+  D   +TA++TGA+SGIGAET RVLA RG  +I   RN+ A  
Sbjct:    13 GASGFGSKSTAEEVTENCDLRSITAVITGATSGIGAETARVLAKRGARLIFPARNVKAAE 72

Query:    63 DVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSK 122
             + K  IV + P  ++ VM+LDLSS+ASVR F +DF +  LPLN+LIN AG       +S+
Sbjct:    73 EAKERIVSEFPETEIVVMKLDLSSIASVRNFVADFESLDLPLNLLINNAGKLAHEHAISE 132

Query:   123 DNIELHFATNHLGAF 137
             D IE+ FATN+LG F
Sbjct:   133 DGIEMTFATNYLGHF 147

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2019474 AT1G64590 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 69/135 (51%), Positives = 90/135 (66%)

Query:     3 GPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR 62
             GPS F + STA+ VT   D   +TAI+TGA+SGIGAET RVLA RG  +++  R++    
Sbjct:    13 GPSGFGSRSTADHVTCNSDLRSLTAIITGATSGIGAETARVLAKRGARLVLPARSVKTAE 72

Query:    63 DVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSK 122
             + K  I+ + P A++ VM LDLSSL SVR+F  DF +  LPLNILIN AG       LS+
Sbjct:    73 ETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESLNLPLNILINNAGKYAHKHALSE 132

Query:   123 DNIELHFATNHLGAF 137
             D +E+ FATN+LG F
Sbjct:   133 DGVEMTFATNYLGHF 147

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2170071 AT5G50130 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 71/137 (51%), Positives = 93/137 (67%)

Query:     3 GPSEFSASSTAEEVTQG--IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
             GP+ F + STAE+VTQ      + +TAI+TG +SGIGAET RVLA RGV V+MA R+M  
Sbjct:    13 GPNGFGSRSTAEQVTQHSFFPCSHLTAIITGGTSGIGAETARVLAKRGVRVVMAVRDMKK 72

Query:    61 GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML 120
                VK  I+ +NP A + + E+DLSSL+SV +F S F ++ LPLNILIN AG+       
Sbjct:    73 AEMVKERIIRENPEADIILFEIDLSSLSSVARFCSQFLSQDLPLNILINNAGVFSPNLEF 132

Query:   121 SKDNIELHFATNHLGAF 137
             S++ IEL FATN LG +
Sbjct:   133 SEEKIELTFATNFLGHY 149

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

UNIPROTKB|E1C8R5 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 61/133 (45%), Positives = 87/133 (65%)

Query:     6 EFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK 65
             ++  +STA E+ QG D +G   I+TGA+SGIG ET +  AL G +VI+A RNM+ G D  
Sbjct:   106 KYDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAV 165

Query:    66 VAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNI 125
               I+ +   AKV+ M LDL+SL SV+ FA  F ++ +PL+IL+  A I G+ + L++D +
Sbjct:   166 QRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGL 225

Query:   126 ELHFATNHLGAFY 138
             E  F  NHLG FY
Sbjct:   226 ESTFQVNHLGHFY 238

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1NXW7 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 61/133 (45%), Positives = 87/133 (65%)

Query:     6 EFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK 65
             ++  +STA E+ QG D +G   I+TGA+SGIG ET +  AL G +VI+A RNM+ G D  
Sbjct:   106 KYDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAV 165

Query:    66 VAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNI 125
               I+ +   AKV+ M LDL+SL SV+ FA  F ++ +PL+IL+  A I G+ + L++D +
Sbjct:   166 QRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGL 225

Query:   126 ELHFATNHLGAFY 138
             E  F  NHLG FY
Sbjct:   226 ESTFQVNHLGHFY 238

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

UNIPROTKB|Q5F389 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 61/133 (45%), Positives = 87/133 (65%)

Query:     6 EFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK 65
             ++  +STA E+ QG D +G   I+TGA+SGIG ET +  AL G +VI+A RNM+ G D  
Sbjct:   106 KYDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAV 165

Query:    66 VAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNI 125
               I+ +   AKV+ M LDL+SL SV+ FA  F ++ +PL+IL+  A I G+ + L++D +
Sbjct:   166 QRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGL 225

Query:   126 ELHFATNHLGAFY 138
             E  F  NHLG FY
Sbjct:   226 ESTFQVNHLGHFY 238

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037682001 SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (313 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	1e-45
PRK06196	315	PRK06196, PRK06196, oxidoreductase; Provisional	2e-39
PRK06197	306	PRK06197, PRK06197, short chain dehydrogenase; Pro	1e-38
cd09809	284	cd09809, human_WWOX_like_SDR_c-like, human WWOX (W	9e-34
cd09807	274	cd09807, retinol-DH_like_SDR_c, retinol dehydrogen	2e-30
PRK05854	313	PRK05854, PRK05854, short chain dehydrogenase; Pro	4e-25
PRK07453	322	PRK07453, PRK07453, protochlorophyllide oxidoreduc	1e-24
cd09810	311	cd09810, LPOR_like_SDR_c_like, light-dependent pro	6e-23
PLN00015	308	PLN00015, PLN00015, protochlorophyllide reductase	8e-20
TIGR01289	314	TIGR01289, LPOR, light-dependent protochlorophylli	3e-19
cd05233	234	cd05233, SDR_c, classical (c) SDRs	1e-17
cd05324	225	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu	1e-15
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	7e-15
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	8e-15
cd09808	255	cd09808, DHRS-12_like_SDR_c-like, human dehydrogen	9e-15
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-13
COG0300	265	COG0300, DltE, Short-chain dehydrogenases of vario	2e-13
COG4221	246	COG4221, COG4221, Short-chain alcohol dehydrogenas	3e-13
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	4e-13
PRK06949	258	PRK06949, PRK06949, short chain dehydrogenase; Pro	7e-13
cd05332	257	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste	2e-12
PRK06914	280	PRK06914, PRK06914, short chain dehydrogenase; Pro	5e-12
PRK07063	260	PRK07063, PRK07063, short chain dehydrogenase; Pro	4e-11
cd05333	240	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein	5e-11
PRK08220	252	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy	5e-11
TIGR04316	250	TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben	7e-11
cd08941	290	cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas	1e-10
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	3e-10
TIGR02632	676	TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate	3e-10
cd05345	248	cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl	3e-10
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	3e-10
cd05339	243	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy	4e-10
cd05370	228	cd05370, SDR_c2, classical (c) SDR, subgroup 2	5e-10
PRK07454	241	PRK07454, PRK07454, short chain dehydrogenase; Pro	5e-10
cd08939	239	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine	9e-10
cd05323	244	cd05323, ADH_SDR_c_like, insect type alcohol dehyd	9e-10
PRK05866	293	PRK05866, PRK05866, short chain dehydrogenase; Pro	1e-09
PRK07832	272	PRK07832, PRK07832, short chain dehydrogenase; Pro	1e-09
PRK05565	247	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-09
PRK07825	273	PRK07825, PRK07825, short chain dehydrogenase; Pro	1e-09
PRK07062	265	PRK07062, PRK07062, short chain dehydrogenase; Pro	2e-09
PRK12429	258	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas	2e-09
PRK08589	272	PRK08589, PRK08589, short chain dehydrogenase; Val	3e-09
PRK07231	251	PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-09
PRK06179	270	PRK06179, PRK06179, short chain dehydrogenase; Pro	4e-09
TIGR01830	239	TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier	4e-09
cd05326	249	cd05326, secoisolariciresinol-DH_like_SDR_c, secoi	5e-09
PRK06125	259	PRK06125, PRK06125, short chain dehydrogenase; Pro	5e-09
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	9e-09
PRK06841	255	PRK06841, PRK06841, short chain dehydrogenase; Pro	9e-09
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	9e-09
cd08932	223	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like	1e-08
cd05352	252	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M	1e-08
cd05346	249	cd05346, SDR_c5, classical (c) SDR, subgroup 5	1e-08
cd08945	258	cd08945, PKR_SDR_c, Polyketide ketoreductase, clas	1e-08
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	2e-08
PRK06181	263	PRK06181, PRK06181, short chain dehydrogenase; Pro	4e-08
cd05347	248	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena	4e-08
cd08934	243	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase	4e-08
cd05371	252	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr	4e-08
PRK12939	250	PRK12939, PRK12939, short chain dehydrogenase; Pro	5e-08
PRK07806	248	PRK07806, PRK07806, short chain dehydrogenase; Pro	5e-08
PRK12829	264	PRK12829, PRK12829, short chain dehydrogenase; Pro	5e-08
PRK12748	256	PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote	6e-08
PRK05855	582	PRK05855, PRK05855, short chain dehydrogenase; Val	6e-08
PRK08261	450	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein)	7e-08
cd05331	244	cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz	8e-08
TIGR01963	255	TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase	9e-08
PRK07060	245	PRK07060, PRK07060, short chain dehydrogenase; Pro	9e-08
PRK07666	239	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-07
PRK09730	247	PRK09730, PRK09730, putative NAD(P)-binding oxidor	1e-07
PRK08226	263	PRK08226, PRK08226, short chain dehydrogenase; Pro	1e-07
cd08943	250	cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al	2e-07
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	2e-07
PRK07067	257	PRK07067, PRK07067, sorbitol dehydrogenase; Provis	3e-07
PRK06138	252	PRK06138, PRK06138, short chain dehydrogenase; Pro	4e-07
cd05358	253	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc	4e-07
cd05364	253	cd05364, SDR_c11, classical (c) SDR, subgroup 11	5e-07
cd08935	271	cd08935, mannonate_red_SDR_c, putative D-mannonate	7e-07
PRK12824	245	PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro	7e-07
cd05369	249	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta	7e-07
cd05362	243	cd05362, THN_reductase-like_SDR_c, tetrahydroxynap	7e-07
PRK06124	256	PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro	8e-07
PRK06198	260	PRK06198, PRK06198, short chain dehydrogenase; Pro	9e-07
PRK07774	250	PRK07774, PRK07774, short chain dehydrogenase; Pro	1e-06
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	1e-06
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-06
COG3967	245	COG3967, DltE, Short-chain dehydrogenase involved	2e-06
cd05330	257	cd05330, cyclohexanol_reductase_SDR_c, cyclohexano	2e-06
PRK07035	252	PRK07035, PRK07035, short chain dehydrogenase; Pro	2e-06
cd05341	247	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta	2e-06
cd08944	246	cd08944, SDR_c12, classical (c) SDR, subgroup 12	3e-06
PRK08265	261	PRK08265, PRK08265, short chain dehydrogenase; Pro	3e-06
PRK09072	263	PRK09072, PRK09072, short chain dehydrogenase; Pro	3e-06
pfam08659	181	pfam08659, KR, KR domain	4e-06
PRK06194	287	PRK06194, PRK06194, hypothetical protein; Provisio	4e-06
TIGR01500	256	TIGR01500, sepiapter_red, sepiapterin reductase	4e-06
PRK07326	237	PRK07326, PRK07326, short chain dehydrogenase; Pro	5e-06
PRK08267	260	PRK08267, PRK08267, short chain dehydrogenase; Pro	5e-06
PRK12828	239	PRK12828, PRK12828, short chain dehydrogenase; Pro	5e-06
PRK07523	255	PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro	6e-06
cd05356	239	cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst	8e-06
PRK12827	249	PRK12827, PRK12827, short chain dehydrogenase; Pro	9e-06
PRK09242	257	PRK09242, PRK09242, tropinone reductase; Provision	1e-05
TIGR03206	250	TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy	1e-05
cd08930	250	cd08930, SDR_c8, classical (c) SDR, subgroup 8	1e-05
PRK05557	248	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-05
cd05351	244	cd05351, XR_like_SDR_c, xylulose reductase-like, c	1e-05
cd05359	242	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c	1e-05
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	1e-05
cd05367	241	cd05367, SPR-like_SDR_c, sepiapterin reductase (SP	2e-05
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	2e-05
PRK05650	270	PRK05650, PRK05650, short chain dehydrogenase; Pro	2e-05
cd08951	260	cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13	2e-05
PRK09186	256	PRK09186, PRK09186, flagellin modification protein	2e-05
PRK12935	247	PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro	2e-05
cd05337	255	cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl	2e-05
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	4e-05
PRK06182	273	PRK06182, PRK06182, short chain dehydrogenase; Val	4e-05
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	4e-05
cd08931	227	cd08931, SDR_c9, classical (c) SDR, subgroup 9	4e-05
PRK07074	257	PRK07074, PRK07074, short chain dehydrogenase; Pro	4e-05
PLN02253	280	PLN02253, PLN02253, xanthoxin dehydrogenase	4e-05
cd08933	261	cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl	5e-05
PRK06057	255	PRK06057, PRK06057, short chain dehydrogenase; Pro	1e-04
cd05365	242	cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi	1e-04
PRK06171	266	PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro	1e-04
PRK06123	248	PRK06123, PRK06123, short chain dehydrogenase; Pro	1e-04
PRK08213	259	PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro	1e-04
PRK08251	248	PRK08251, PRK08251, short chain dehydrogenase; Pro	1e-04
cd08929	226	cd08929, SDR_c4, classical (c) SDR, subgroup 4	1e-04
PRK06398	258	PRK06398, PRK06398, aldose dehydrogenase; Validate	1e-04
cd05329	251	cd05329, TR_SDR_c, tropinone reductase-I and II (T	1e-04
TIGR01832	248	TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena	2e-04
PRK12745	256	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote	2e-04
cd05340	236	cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li	2e-04
cd08940	258	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge	2e-04
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	2e-04
PRK08017	256	PRK08017, PRK08017, oxidoreductase; Provisional	2e-04
PRK07478	254	PRK07478, PRK07478, short chain dehydrogenase; Pro	2e-04
cd05363	254	cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH),	2e-04
PRK06523	260	PRK06523, PRK06523, short chain dehydrogenase; Pro	3e-04
PRK07023	243	PRK07023, PRK07023, short chain dehydrogenase; Pro	3e-04
TIGR01829	242	TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta	3e-04
PRK06077	252	PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-04
PRK12743	256	PRK12743, PRK12743, oxidoreductase; Provisional	4e-04
cd05360	233	cd05360, SDR_c3, classical (c) SDR, subgroup 3	4e-04
PRK06500	249	PRK06500, PRK06500, short chain dehydrogenase; Pro	5e-04
PRK13394	262	PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas	7e-04
PRK12936	245	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote	8e-04
PRK12384	259	PRK12384, PRK12384, sorbitol-6-phosphate dehydroge	8e-04
PRK07775	274	PRK07775, PRK07775, short chain dehydrogenase; Pro	9e-04
cd05274	375	cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt	0.001
PRK06947	248	PRK06947, PRK06947, glucose-1-dehydrogenase; Provi	0.001
PRK07109	334	PRK07109, PRK07109, short chain dehydrogenase; Pro	0.001
PRK12937	245	PRK12937, PRK12937, short chain dehydrogenase; Pro	0.001
PRK08643	256	PRK08643, PRK08643, acetoin reductase; Validated	0.002
cd05328	250	cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de	0.002
PLN02780	320	PLN02780, PLN02780, ketoreductase/ oxidoreductase	0.002
PRK07069	251	PRK07069, PRK07069, short chain dehydrogenase; Val	0.002
PRK06924	251	PRK06924, PRK06924, short chain dehydrogenase; Pro	0.002
cd08937	256	cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa	0.002
cd05343	250	cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c	0.002
PRK06482	276	PRK06482, PRK06482, short chain dehydrogenase; Pro	0.003
PRK06935	258	PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog	0.003
PRK08628	258	PRK08628, PRK08628, short chain dehydrogenase; Pro	0.003
PRK07024	257	PRK07024, PRK07024, short chain dehydrogenase; Pro	0.003
PRK06172	253	PRK06172, PRK06172, short chain dehydrogenase; Pro	0.003
PRK05993	277	PRK05993, PRK05993, short chain dehydrogenase; Pro	0.003
cd05368	241	cd05368, DHRS6_like_SDR_c, human DHRS6-like, class	0.004
cd08942	250	cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy	0.004

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score =  148 bits (377), Expect = 1e-45
 Identities = 62/115 (53%), Positives = 76/115 (66%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G   ++TGA+SGIG ET R LA RG HVI+A RN   G +    I  +   AKV+V++LD
Sbjct: 1   GKVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLD 60

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY 138
           LSSLASVR+FA +F AR   L+ILIN AGI   P  L+KD  EL FA N+LG F 
Sbjct: 61  LSSLASVRQFAEEFLARFPRLDILINNAGIMAPPRRLTKDGFELQFAVNYLGHFL 115

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional

 Score =  134 bits (338), Expect = 2e-39
 Identities = 63/133 (47%), Positives = 74/133 (55%), Gaps = 6/133 (4%)

Query: 5   SEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV 64
           S F A+STAEEV  G D +G TAIVTG  SG+G ETTR LA  G HVI+  R     R+ 
Sbjct: 7   SGFGAASTAEEVLAGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREA 66

Query: 65  KVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDN 124
              I        V+V+ LDL+ L SVR FA  F      ++ILIN AG+   P     D 
Sbjct: 67  LAGI------DGVEVVMLDLADLESVRAFAERFLDSGRRIDILINNAGVMACPETRVGDG 120

Query: 125 IELHFATNHLGAF 137
            E  FATNHLG F
Sbjct: 121 WEAQFATNHLGHF 133

Length = 315

>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional

 Score =  132 bits (333), Expect = 1e-38
 Identities = 53/117 (45%), Positives = 70/117 (59%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D +G  A+VTGA++G+G ET   LA +G HV++A RN+  G+     I    P A V + 
Sbjct: 13  DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQ 72

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
           ELDL+SLASVR  A    A    +++LIN AG+  TP   + D  EL F TNHLG F
Sbjct: 73  ELDLTSLASVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHF 129

Length = 306

>gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs

 Score =  118 bits (298), Expect = 9e-34
 Identities = 52/115 (45%), Positives = 72/115 (62%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G   I+TGA+SGIG ET R  AL G HVI+A RNM+        I+ +   A+V+ M LD
Sbjct: 1   GKVIIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKARVEAMTLD 60

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY 138
           L+SL SV++FA  F A+  PL++L+  A +   P+ L++D +E  F  NHLG FY
Sbjct: 61  LASLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTLTEDGLETTFQVNHLGHFY 115

Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284

>gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs

 Score =  109 bits (275), Expect = 2e-30
 Identities = 52/114 (45%), Positives = 69/114 (60%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G T I+TGA++GIG ET R LA RG  VIMA R+MA   +    I       +V V  LD
Sbjct: 1   GKTVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLD 60

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
           L+SL S+R FA++F A    L++LIN AG+   P+  ++D  E+ F  NHLG F
Sbjct: 61  LASLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSKTEDGFEMQFGVNHLGHF 114

Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274

>gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional

 Score = 96.7 bits (241), Expect = 4e-25
 Identities = 52/118 (44%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D +G  A+VTGAS G+G    R LA  G  VI+  RN A G     AI    P AK+ + 
Sbjct: 11  DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLR 70

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGICGTP-FMLSKDNIELHFATNHLGAF 137
            LDLSSLASV        A   P+++LIN AG+   P    + D  EL F TNHLG F
Sbjct: 71  ALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHF 128

Length = 313

>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated

 Score = 95.4 bits (238), Expect = 1e-24
 Identities = 47/116 (40%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           T I+TGASSG+G    + LA RG HVIMA RN+   +    A  +  P     ++ +DL 
Sbjct: 8   TVIITGASSGVGLYAAKALAKRGWHVIMACRNLK--KAEAAAQELGIPPDSYTIIHIDLG 65

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPF----MLSKDNIELHFATNHLGAF 137
            L SVR+F  DF A   PL+ L+  A +   P     + S    EL  ATNHLG F
Sbjct: 66  DLDSVRRFVDDFRALGKPLDALVCNAAVY-MPLLKEPLRSPQGYELSMATNHLGHF 120

Length = 322

>gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs

 Score = 91.0 bits (226), Expect = 6e-23
 Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
           T ++TGASSG+G    + LA RG  HV+MA R+          + M  P     V+  DL
Sbjct: 3   TVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGM--PKDSYSVLHCDL 60

Query: 85  SSLASVRKFASDFTARALPLNILINKAGI---CGTPFMLSKDNIELHFATNHLGAF 137
           +SL SVR+F  +F     PL+ L+  A +          + D  EL    NHLG F
Sbjct: 61  ASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGHF 116

Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311

>gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase

 Score = 82.4 bits (204), Expect = 8e-20
 Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 28  IVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           I+TGASSG+G  T + LA  G  HV+MA R+         +  M  P     VM LDL+S
Sbjct: 1   IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM--PKDSYTVMHLDLAS 58

Query: 87  LASVRKFASDFTARALPLNILINKAGI----CGTPFMLSKDNIELHFATNHLGAF 137
           L SVR+F  +F     PL++L+  A +       P   + D  EL   TNHLG F
Sbjct: 59  LDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEP-TFTADGFELSVGTNHLGHF 112

Length = 308

>gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase

 Score = 81.1 bits (200), Expect = 3e-19
 Identities = 45/117 (38%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 26  TAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
           T I+TGASSG+G    + LA  G  HVIMA R+         ++ M  P     +M LDL
Sbjct: 5   TVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM--PKDSYTIMHLDL 62

Query: 85  SSLASVRKFASDFTARALPLNILINKAGI----CGTPFMLSKDNIELHFATNHLGAF 137
            SL SVR+F   F     PL+ L+  A +       P   + D  EL   TNHLG F
Sbjct: 63  GSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEP-RFTADGFELSVGTNHLGHF 118

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score = 75.4 bits (186), Expect = 1e-17
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGASSGIG    R LA  G  V++ADRN  A  ++      +        ++ D+S 
Sbjct: 1   ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAELAAI---EALGGNAVAVQADVSD 57

Query: 87  LASVRKFASDFTARALPLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAFY 138
              V     +       L+IL+N AGI   G    L+ ++ +     N  G F 
Sbjct: 58  EEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFL 111

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs

 Score = 70.0 bits (172), Expect = 1e-15
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
            A+VTGA+ GIG E  R LA  G   VI+  R++  G+     +  +     V   +LD+
Sbjct: 2   VALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKL--RAEGLSVRFHQLDV 59

Query: 85  SSLASVRKFASDFTARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLG 135
           +  AS+   A     +   L+IL+N AGI          +++       TN  G
Sbjct: 60  TDDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFG 113

PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 68.3 bits (167), Expect = 7e-15
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIM-ADRNMAAGRDVKVAIVMQNPAAKVD 78
           +D +G  A+VTGASSGIG    R LA  G  V++ A R+     +   A + +    +  
Sbjct: 1   MDLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAA 60

Query: 79  VMELDLSS-LASVRKFASDFTARALPLNILINKAGIC---GTPFMLSKDNIELHFATNHL 134
            +  D+S    SV    +        ++IL+N AGI         L++++ +     N L
Sbjct: 61  AVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLL 120

Query: 135 GAFY 138
           GAF 
Sbjct: 121 GAFL 124

Length = 251

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 66.8 bits (164), Expect = 8e-15
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
           T ++TG + G+G    R LA  G  H+++  R   A    ++   ++   A+V V   D+
Sbjct: 2   TVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACDV 61

Query: 85  SSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           +   ++    +   A   PL+ +++ AG+   G    L+ +  E   A    GA+ 
Sbjct: 62  ADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWN 117

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs

 Score = 68.0 bits (166), Expect = 9e-15
 Identities = 35/110 (31%), Positives = 56/110 (50%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           ++TGA+SGIG      +A RG  V M  RN     + +  I  ++    + +  +D+S  
Sbjct: 5   LITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEIETESGNQNIFLHIVDMSDP 64

Query: 88  ASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
             V +F  +F      L++LIN AG       L++D +E +FATN LG +
Sbjct: 65  KQVWEFVEEFKEEGKKLHVLINNAGCMVNKRELTEDGLEKNFATNTLGTY 114

Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 64.4 bits (158), Expect = 2e-13
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA+VTGAS GIG      LA  G  V++ D N  A   +   +  +    +  V+  
Sbjct: 4   QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAEL--RAAGGEARVLVF 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           D+S  A+VR            L+IL+N AGI        +S+++ +     N  G F 
Sbjct: 62  DVSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFN 119

Length = 246

>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           TA++TGASSGIGAE  + LA RG ++I+  R       +   +       +V+V+  DLS
Sbjct: 8   TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELE-DKTGVEVEVIPADLS 66

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
              ++ +   +   R  P+++L+N AG 
Sbjct: 67  DPEALERLEDELKERGGPIDVLVNNAGF 94

Length = 265

>gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 22  AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVME 81
             G  A++TGASSGIG  T R LA  G  V++A R      +   A+  +  A     + 
Sbjct: 4   LKGKVALITGASSGIGEATARALAEAGAKVVLAARRE----ERLEALADEIGAGAALALA 59

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           LD++  A+V             ++IL+N AG+  G P      D+ +    TN  G   
Sbjct: 60  LDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLN 118

Length = 246

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TG SSGIG      LA +G  VI   RN      ++    + N    ++V+ELD++
Sbjct: 2   VVLITGCSSGIGLALALALAAQGYRVIATARN---PDKLESLGELLN--DNLEVLELDVT 56

Query: 86  SLASVRKFASDFTARALPLNILINKAGIC 114
              S++    +   R   +++L+N AG  
Sbjct: 57  DEESIKAAVKEVIERFGRIDVLVNNAGYG 85

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional

 Score = 62.9 bits (153), Expect = 7e-13
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           I+  G  A+VTGASSG+GA   +VLA  G  V++A R +   ++++  I  +  AA   V
Sbjct: 5   INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAH--V 62

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML--SKDNIELHFATNHLGAF 137
           + LD++   S++   +     A  ++IL+N +G+  T  ++  +  + +  F TN  GAF
Sbjct: 63  VSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAF 122

Query: 138 Y 138
           +
Sbjct: 123 F 123

Length = 258

>gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           I+TGASSGIG E    LA  G  ++++ R      +VK   + +  A    V+ LD+S L
Sbjct: 7   IITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSECL-ELGAPSPHVVPLDMSDL 65

Query: 88  ASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELH---FATNHLG 135
               +   +       L+ILIN AGI     +    +I++       N+ G
Sbjct: 66  EDAEQVVEEALKLFGGLDILINNAGI-SMRSLFHDTSIDVDRKIMEVNYFG 115

Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            AIVTGASSG G  TT  LA +G  VI   RN     ++       N    + V +LD++
Sbjct: 5   IAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVT 64

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPFM--LSKDNIELHFATNHLGA 136
              S+  F          +++L+N AG     F+  +  +     F TN  GA
Sbjct: 65  DQNSIHNF-QLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGA 116

Length = 280

>gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  A+VTGA+ GIGA   R  A  G  V +AD + A       AI      A+V  +  
Sbjct: 6   AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPA 65

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAFY 138
           D++  ASV    +       PL++L+N AGI     P  ++ ++    FA +  GA+ 
Sbjct: 66  DVTDAASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWN 123

Length = 260

>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs

 Score = 57.9 bits (141), Expect = 5e-11
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM--ELD 83
            A+VTGAS GIG      LA  G  V + DR+     +     V +  A   +    E D
Sbjct: 2   VALVTGASRGIGRAIALRLAAEGAKVAVTDRS----EEAAAETVEEIKALGGNAAALEAD 57

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           +S   +V        A   P++IL+N AGI
Sbjct: 58  VSDREAVEALVEKVEAEFGPVDILVNNAGI 87

This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240

>gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 38/122 (31%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 19  GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVD 78
            +D +G T  VTGA+ GIG          G  VI  D+      D   A           
Sbjct: 3   AMDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATF--------- 53

Query: 79  VMELDLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGA 136
              LD+S  A+V +      A   PL++L+N AGI   G    LS ++ +  FA N  GA
Sbjct: 54  --VLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGA 111

Query: 137 FY 138
           F 
Sbjct: 112 FN 113

Length = 252

>gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            +VTGA+ GIG    R LA  G  V   DRN    + +++   ++         +LD++ 
Sbjct: 1   VLVTGAAQGIGYAVARALAEAGARVAAVDRN--FEQLLELVADLRRYGYPFATYKLDVAD 58

Query: 87  LASVRKFASDFTARALPLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAFY 138
            A+V +          P+++L+N AGI   G    LS ++ +  FA N  G F 
Sbjct: 59  SAAVDEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQATFAVNTFGVFN 112

Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250

>gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 27  AIVTGASSGIG-AETTRVLAL----RGVHVIMADRNMAAGRDVKVAIVMQNPAAKV--DV 79
            +VTGA+SG+G A   R+LA       + +I+A RN+        A++  +P A+V  D 
Sbjct: 4   VLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVFDY 63

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGICGTP 117
           + +DLS++ SV   A +   R   L+ L   AGI   P
Sbjct: 64  VLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNP 101

3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 4/117 (3%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VT ASSGIG    R LA  G  V +  RN       + A  ++   A V  +  D
Sbjct: 1   GKVALVTAASSGIGLAIARALAREGARVAICARNRENLE--RAASELRAGGAGVLAVVAD 58

Query: 84  LSSLASVRKFASDFTARALPLNILINKAG--ICGTPFMLSKDNIELHFATNHLGAFY 138
           L+    + +           ++IL+N AG    G    L+ ++    F    L    
Sbjct: 59  LTDPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFAELTDEDWLEAFDLKLLSVIR 115

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 32/95 (33%), Positives = 50/95 (52%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           A   A VTG + GIG ET R LA  G HV++AD N+ A   V   I  Q  A +   +++
Sbjct: 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKM 472

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTP 117
           D++   +V+   +D       ++I++N AGI  + 
Sbjct: 473 DVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSS 507

Length = 676

>gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  AIVTGA SG G    R  A  G  V++AD N      V   I     A + DV   
Sbjct: 4   EGKVAIVTGAGSGFGEGIARRFAQEGARVVIADINADGAERVAADIGEAAIAIQADV--- 60

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
             +  A V        ++   L+IL+N AGI
Sbjct: 61  --TKRADVEAMVEAALSKFGRLDILVNNAGI 89

This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  A+VTGA+ GIG  T + LA  G  V++AD +  A       +   + A  V     
Sbjct: 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGV---AC 477

Query: 83  DLSSLASVRKFASDFTARAL-PLNILINKAGI 113
           D++  A+V+  A +  A A   ++I+++ AGI
Sbjct: 478 DVTDEAAVQA-AFEEAALAFGGVDIVVSNAGI 508

Length = 681

>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TG  SGIG       A RG  V++ D N     +    +              D+S
Sbjct: 1   IVLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVRKAGGKVHYYKC--DVS 58

Query: 86  SLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
               V + A         + ILIN AG+  G   + L  + IE  F  N L  F+
Sbjct: 59  KREEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLELPDEEIEKTFEVNTLAHFW 113

17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G T ++TG +SGIG    R     G  VI+  R              + P      + L
Sbjct: 4   TGNTVLITGGTSGIGLALARKFLEAGNTVIITGRREE----RLAEAKKELPNIH--TIVL 57

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D+    SV   A    +    L+ILIN AGI
Sbjct: 58  DVGDAESVEALAEALLSEYPNLDILINNAGI 88

Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228

>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A++TGASSGIG  T    A  G  + +  R+  A   +   +  ++   K     +DLS
Sbjct: 8   RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAEL--RSTGVKAAAYSIDLS 65

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
           +  ++    ++   +    ++LIN AG+
Sbjct: 66  NPEAIAPGIAELLEQFGCPDVLINNAGM 93

Length = 241

>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 4/119 (3%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVM--QNPAAKVDVME 81
           G   ++TG SSGIG    + L   G +VI+  R+ +   +    I         KV  + 
Sbjct: 1   GKHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYIS 60

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
            DLS    V +  +    +  P ++++N AGI     F  L+ +  E     N+ G+  
Sbjct: 61  ADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLN 119

These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239

>gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           AI+TG +SGIG  T ++L  +G  V + DRN   G      +   NP  K   ++ D++S
Sbjct: 3   AIITGGASGIGLATAKLLLKKGAKVAILDRNENPG--AAAELQAINPKVKATFVQCDVTS 60

Query: 87  LASVRKFASDFTARALPLNILINKAGICGTPFML 120
              +         +   ++ILIN AGI      L
Sbjct: 61  WEQLAAAFKKAIEKFGRVDILINNAGILDEKSYL 94

This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 18  QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV 77
           Q +D  G   ++TGASSGIG       A RG  V+   R       V   I      A  
Sbjct: 34  QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAM- 92

Query: 78  DVMELDLSSLASVRKFASDFTARALPLNILINKAG 112
             +  DLS L +V    +D   R   ++ILIN AG
Sbjct: 93  -AVPCDLSDLDAVDALVADVEKRIGGVDILINNAG 126

Length = 293

>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
             VTGA+SGIG  T   LA +G  + + DR+ A G    VA          +   LD+S 
Sbjct: 3   CFVTGAASGIGRATALRLAAQGAELFLTDRD-ADGLAQTVADARALGGTVPEHRALDISD 61

Query: 87  LASVRKFASDFTARALPLNILINKAGI 113
             +V  FA+D  A    +++++N AGI
Sbjct: 62  YDAVAAFAADIHAAHGSMDVVMNIAGI 88

Length = 272

>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           G  AIVTGAS GIG     +LA  G  V++A D N  A +++   I  +        ++ 
Sbjct: 5   GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEI--KEEGGDAIAVKA 62

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           D+SS   V         +   ++IL+N AGI        ++ +  +     N  G   
Sbjct: 63  DVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVML 120

Length = 247

>gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
            D  G    +TG + GIG  T R LA  G  V + D + A  ++    +        V  
Sbjct: 1   DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL------GLVVG 54

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             LD++  AS   F     A   P+++L+N AG+
Sbjct: 55  GPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGV 88

Length = 273

>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 29/93 (31%), Positives = 44/93 (47%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           I   G  A+VTG SSGIG  T  +L   G  V +  R+       +  +  + P A++  
Sbjct: 4   IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLA 63

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAG 112
              D+   A V  FA+   AR   +++L+N AG
Sbjct: 64  ARCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96

Length = 265

>gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTGA+SGIG E    LA  G  V++AD N  A      A  +Q    K   + +D
Sbjct: 4   GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAA--AAAEALQKAGGKAIGVAMD 61

Query: 84  LSSLASVRKFASDFTARAL-PLNILINKAGI 113
           ++   ++     D+       ++IL+N AGI
Sbjct: 62  VTDEEAINA-GIDYAVETFGGVDILVNNAGI 91

Length = 258

>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A++TGAS+GIG  +   LA  G +V+  D   A    V     +++   K     +D+S
Sbjct: 8   VAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVD---KIKSNGGKAKAYHVDIS 64

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
               V+ FAS+   +   +++L N AG+
Sbjct: 65  DEQQVKDFASEIKEQFGRVDVLFNNAGV 92

Length = 272

>gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 34/92 (36%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  AIVTGASSGIG    R  A  G  V++ DRN  A   V   I+    A  V     
Sbjct: 4   EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAV---AA 60

Query: 83  DLSSLASVRKFASDFTARAL-PLNILINKAGI 113
           D+S  A V   A          ++IL+N AG 
Sbjct: 61  DVSDEADVEA-AVAAALERFGSVDILVNNAGT 91

Length = 251

>gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGASSGIG  T   LA  G  V    RN A             P   V+++ELD++
Sbjct: 6   VALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR----------AAPIPGVELLELDVT 55

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
             ASV+    +  ARA  +++L+N AG+
Sbjct: 56  DDASVQAAVDEVIARAGRIDVLVNNAGV 83

Length = 270

>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGAS GIG      LA  G  VI+  R+   G +  V  +      K   +  D+S 
Sbjct: 1   ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYG-VKALGVVCDVSD 59

Query: 87  LASVRKFASDFTARALPLNILINKAGI 113
              V+    +      P++IL+N AGI
Sbjct: 60  REDVKAVVEEIEEELGPIDILVNNAGI 86

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  AI+TG +SGIG  T R+ A  G  V++AD +  AG+ V   +        +  +  D
Sbjct: 4   GKVAIITGGASGIGEATARLFAKHGARVVIADIDDDAGQAVAAELG----DPDISFVHCD 59

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTP--FMLSKDNIELH--FATNHLGAFY 138
           ++  A VR       AR   L+I+ N AG+ G P   +L     E       N  GAF 
Sbjct: 60  VTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAFL 118

Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN----MAAGRDVKVAIVMQNPAAKVD 78
           AG   ++TGAS GIGA      A  G H+ +  R+     A   D++ A         V 
Sbjct: 6   AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVA 60

Query: 79  VMELDLSSLASVRKFASDFTARALPLNILINKAG 112
           V  LDLSS  +  + A    A A  ++IL+N AG
Sbjct: 61  VHALDLSSPEAREQLA----AEAGDIDILVNNAG 90

Length = 259

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score = 51.8 bits (125), Expect = 9e-09
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTGA+ GIG      LA  G  VI+ D            +      A+    ++D
Sbjct: 6   GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKAR--ARQVD 63

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICG-TPFMLSKD 123
           +   A+++   +        L+IL+  AGI   TPF    D
Sbjct: 64  VRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDD 104

Length = 251

>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional

 Score = 51.6 bits (124), Expect = 9e-09
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D +G  A+VTG +SGIG     + A +G  V + DR+     +V   ++  N    V   
Sbjct: 12  DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS-EDVAEVAAQLLGGNAKGLV--- 67

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             D+S   SV    +   +    ++IL+N AG+
Sbjct: 68  -CDVSDSQSVEAAVAAVISAFGRIDILVNSAGV 99

Length = 255

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 27  AIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            ++TGAS GIG E  R L  RG   VI   R+ +A  ++          +++ ++ELD++
Sbjct: 1   VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELAALGASH---SRLHILELDVT 57

Query: 86  SL--ASVRKFASDFTARALPLNILINKAGICGTPFMLS---KDNIELHFATNHLGAF 137
                S    A         L++LIN AGI  +    S    +++   F  N LG  
Sbjct: 58  DEIAESAEAVAERL--GDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPL 112

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGAS GIG E  R LA  G  V +  RN      +  +         V+ +  D  
Sbjct: 2   VALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALSASG------GDVEAVPYDAR 55

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAF 137
                R        R   +++L++ AGI   T     S   +E HF+ N +   
Sbjct: 56  DPEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEAHFSINVIAPA 109

This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223

>gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
               G  AIVTG S GIG    R LA  G  V +   +     +    +  +    K   
Sbjct: 4   FSLKGKVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYG-VKTKA 62

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML--SKDNIELHFATNHLGAF 137
            + D+SS  SV K           ++ILI  AGI      L  + +        N  G F
Sbjct: 63  YKCDVSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYTYEQWNKVIDVNLNGVF 122

Query: 138 Y 138
            
Sbjct: 123 N 123

NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252

>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           T ++TGASSGIG  T R  A  G  +I+  R     +++   +       KV  ++LD+S
Sbjct: 2   TVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELG-AKFPVKVLPLQLDVS 60

Query: 86  SLASVRKFASDFTARALPLNILINKAGIC-GTP--FMLSKDNIELHFATNHLGAFY 138
              S+     +       ++IL+N AG+  G         ++ E    TN  G   
Sbjct: 61  DRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETMIDTNVKGLLN 116

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI-VMQNPAAKVDVMELDL 84
            A+VTGA+SGIG    R L   G+ V +  R       +   +  ++    + D    D+
Sbjct: 5   VALVTGATSGIGLAIARRLGKEGLRVFVCARG---EEGLATTVKELREAGVEADGRTCDV 61

Query: 85  SSLASVRKFASDFTARALPLNILINKAGICG 115
            S+  +    +   AR  P+++L+N AG  G
Sbjct: 62  RSVPEIEALVAAAVARYGPIDVLVNNAGRSG 92

Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            ++TGASSGIG    R  A  G +V +A R      ++K  ++  NP   V+V  LD++ 
Sbjct: 1   VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELL--NPNPSVEVEILDVTD 58

Query: 87  LASVRKFASDFTARALPLNILINKAGICGTPFMLS---KDNIELHFATNHLGAFY 138
               +   ++  A    L+++I  AG+     +     K   E    TN LGA  
Sbjct: 59  EERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRET-IDTNLLGAAA 112

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             I+TGAS GIG      LA  G  +++A RN    R   +A  + +   +  V+  D+S
Sbjct: 3   VVIITGASEGIGRALAVRLARAGAQLVLAARN--ETRLASLAQELADHGGEALVVPTDVS 60

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
              +  +      AR   ++IL+N AGI
Sbjct: 61  DAEACERLIEAAVARFGGIDILVNNAGI 88

Length = 263

>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
              G  A+VTGAS GIG      LA  G ++++  RN     + +  I  +    +    
Sbjct: 2   SLKGKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIEKE--GVEATAF 59

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGIC 114
             D+S   +++            ++IL+N AGI 
Sbjct: 60  TCDVSDEEAIKAAVEAIEEDFGKIDILVNNAGII 93

Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTGASSGIG  T R LA  G  V +A R     R   +A  ++    K  V+EL
Sbjct: 2   QGKVALVTGASSGIGEATARALAAEGAAVAIAARR--VDRLEALADELEAEGGKALVLEL 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D++    V             L+IL+N AGI
Sbjct: 60  DVTDEQQVDAAVERTVEALGRLDILVNNAGI 90

CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G+ A+VTG +SG+G  T   L  +G  V++ D   + G  V               + +D
Sbjct: 2   GLVAVVTGGASGLGLATVERLLAQGAKVVILDLPNSPGETVAKLGD------NCRFVPVD 55

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGIC 114
           ++S   V+   +   A+   L+I++N AGI 
Sbjct: 56  VTSEKDVKAALALAKAKFGRLDIVVNCAGIA 86

HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252

>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  A+VTGA+ G+GA     LA  G  V   D   A  R++  A+  +    +   +  
Sbjct: 6   AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL--EAAGGRAHAIAA 63

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           DL+  ASV++F     A    L+ L+N AGI
Sbjct: 64  DLADPASVQRFFDAAAAALGGLDGLVNNAGI 94

Length = 250

>gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D  G TA+VTG+S GIGA+T ++LA  G HV++  R  A  R  KV   ++    +   +
Sbjct: 3   DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAP-RANKVVAEIEAAGGRASAV 61

Query: 81  ELDLSSLASVRKFASDFTARALPLNILI 108
             DL+   SV             L+ L+
Sbjct: 62  GADLTDEESVAALMDTAREEFGGLDALV 89

Length = 248

>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G+  +VTG +SGIG       A  G  V + D + AA      A   + P AKV     D
Sbjct: 11  GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAA----LAATAARLPGAKVTATVAD 66

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICG 115
           ++  A V +       R   L++L+N AGI G
Sbjct: 67  VADPAQVERVFDTAVERFGGLDVLVNNAGIAG 98

Length = 264

>gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 24  GVTAIVTGAS--SGIGAETTRVLALRGVHV-----IMADRNMAAGRDVKVAIVMQ----N 72
              A+VTGAS  +GIGA   R LA +G+ +        D+ M  G   K  ++++    +
Sbjct: 5   KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIES 64

Query: 73  PAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKA--GICGTPFMLSKDNIELHFA 130
              + + ME+DLS   +  +     + R    +ILIN A          L+ + ++ H+A
Sbjct: 65  YGVRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYA 124

Query: 131 TN 132
            N
Sbjct: 125 VN 126

Length = 256

>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            +VTGA SGIG ET    A  G  V+ +D + AA       I      A      +D+S 
Sbjct: 318 VVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYR--VDVSD 375

Query: 87  LASVRKFASDFTARALPLNILINKAGI 113
             ++  FA    A     +I++N AGI
Sbjct: 376 ADAMEAFAEWVRAEHGVPDIVVNNAGI 402

Length = 582

>gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 49.4 bits (119), Expect = 7e-08
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV--DVM 80
           AG  A+VTGA+ GIGA    VLA  G HV+  D   AAG        +   A +V    +
Sbjct: 209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP-AAGEA------LAAVANRVGGTAL 261

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
            LD+++  +  + A     R   L+I+++ AGI
Sbjct: 262 ALDITAPDAPARIAEHLAERHGGLDIVVHNAGI 294

Length = 450

>gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            IVTGA+ GIG    R L   G  VI  D            +++      + +  LD++ 
Sbjct: 1   VIVTGAAQGIGRAVARHLLQAGATVIALDLP---------FVLLLEYGDPLRLTPLDVAD 51

Query: 87  LASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
            A+VR+  S   A   P++ L+N AG+   G    LS ++ E  FA N  G F 
Sbjct: 52  AAAVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTEDWEQTFAVNVTGVFN 105

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G TA+VTGA+SGIG    R LA  G +V++ D           A V  +    V  +  D
Sbjct: 1   GKTALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAE--AAAKVAGDAGGSVIYLPAD 58

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           ++    +    +   A    L+IL+N AGI
Sbjct: 59  VTKEDEIADMIAAAAAEFGGLDILVNNAGI 88

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255

>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D +G + +VTGASSGIG      LA RG  V+ A RN AA   +             + +
Sbjct: 6   DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-------GCEPL 58

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
            LD+   A++R       A A   + L+N AGI
Sbjct: 59  RLDVGDDAAIRAAL----AAAGAFDGLVNCAGI 87

Length = 245

>gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK-VAIVMQNPAAKVDVMEL 82
           G  A++TGA  GIG      LA  GV+V +  R      ++K VA  ++    KV +   
Sbjct: 7   GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEE---NLKAVAEEVEAYGVKVVIATA 63

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           D+S    V             ++ILIN AGI   G    L     E     N +G +Y
Sbjct: 64  DVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYY 121

Length = 239

>gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHV-IMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
            A+VTG S GIG  T  +LA  G  V +   +N+ A ++V   I       K  V++ D+
Sbjct: 3   IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADI 60

Query: 85  SSLASVRKFASDFTARALPLNILINKAGICGTPFM---LSKDNIELHFATNHLGAF 137
           S    V    +       PL  L+N AGI  T      L+ + I    +TN  G F
Sbjct: 61  SDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYF 116

Length = 247

>gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G TA++TGA  GIG    RV A  G ++I+ D +       K+A  +     +   +  D
Sbjct: 6   GKTALITGALQGIGEGIARVFARHGANLILLDISPEI---EKLADELCGRGHRCTAVVAD 62

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAF 137
           +   ASV         +   ++IL+N AG+C    F+ +S ++ + H   N  G +
Sbjct: 63  VRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVW 118

Length = 263

>gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTG +SGIG    + LA  G  V++AD +       KVA   Q     + V + D
Sbjct: 1   GKVALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAE--KVAEAAQGGPRALGV-QCD 57

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           ++S A V+            L+I+++ AGI
Sbjct: 58  VTSEAQVQSAFEQAVLEFGGLDIVVSNAGI 87

This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G   ++TGASSGIG  T   +A  G  V +  RN  A  ++   I  +           D
Sbjct: 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEI--RAKGGTAHAYTCD 428

Query: 84  LSSLASVRKFASDFTARALPLNILINKAG 112
           L+  A+V     D  A    ++ L+N AG
Sbjct: 429 LTDSAAVDHTVKDILAEHGHVDYLVNNAG 457

Length = 657

>gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A++TGA+SGIG          G  V++AD   A  R   + I           + LD
Sbjct: 6   GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLD 60

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           ++   S+ +  +    R   ++IL N A +
Sbjct: 61  VTRQDSIDRIVAAAVERFGGIDILFNNAAL 90

Length = 257

>gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  AIVTGA SGIG  T ++ A  G  V++ADR+  A   V  AI       +    + 
Sbjct: 4   AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQG 60

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAG 112
           D+ S  +V        AR   L++L+N AG
Sbjct: 61  DVGSAEAVEALVDFVAARWGRLDVLVNNAG 90

Length = 252

>gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTGASSGIG      LA  G +V++  R+     +  V  +       + V + 
Sbjct: 2   KGKVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEIKAVGGKAIAV-QA 60

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D+S    V             L+IL+N AG+
Sbjct: 61  DVSKEEDVVALFQSAIKEFGTLDILVNNAGL 91

GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVME 81
           +G  AI+TG+SSGIGA T  + A  G  + +  R+     + + + +       K+ ++ 
Sbjct: 2   SGKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSCLQAGVSEKKILLVV 61

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGI 113
            DL+      +  S   A+   L+IL+N AGI
Sbjct: 62  ADLTEEEGQDRIISTTLAKFGRLDILVNNAGI 93

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253

>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
                  A++TG +  +G    R LA  G  V    RN   G   KVA  +     +   
Sbjct: 1   FSLKNKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGD--KVAKEITALGGRAIA 58

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAG----------------ICGTPFMLSKD 123
           +  D+   AS+ +   +  A+   ++ILIN AG                     F L ++
Sbjct: 59  LAADVLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDLDEE 118

Query: 124 NIELHFATNHLGAFY 138
             E  F  N  G+F 
Sbjct: 119 GWEFVFDLNLNGSFL 133

D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271

>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDL 84
            A+VTGA  GIG+   R L   G  VI          +D            +V + ELD+
Sbjct: 4   IALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFE--EYGFTEDQVRLKELDV 61

Query: 85  SSLASVRKFASDFTARALPLNILINKAGI 113
           +      +  ++      P++IL+N AGI
Sbjct: 62  TDTEECAEALAEIEEEEGPVDILVNNAGI 90

Length = 245

>gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A +TG  +GIG    +  A  G  V +A R           I       +   ++ 
Sbjct: 2   KGKVAFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEI-SSATGGRAHPIQC 60

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAG 112
           D+    +V     +       ++ILIN A 
Sbjct: 61  DVRDPEAVEAAVDETLKEFGKIDILINNAA 90

TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249

>gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  A+VTGAS GIG    + LA  G  V++   +  A  + +V   ++    K   ++ 
Sbjct: 2   AGKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAE-EVVAEIEAAGGKAIAVQA 60

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELH-------FATNHLG 135
           D+S  + V +           ++IL+N AG+     ML K   E         F  N  G
Sbjct: 61  DVSDPSQVARLFDAAEKAFGGVDILVNNAGV-----MLKKPIAETSEEEFDRMFTVNTKG 115

Query: 136 AFY 138
           AF+
Sbjct: 116 AFF 118

1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  A+VTG++ G+G E  R LA  G HV++  RN A       A+     AA  + +  
Sbjct: 10  AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAA--EALAF 67

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAG 112
           D++   +V    +   A    L+IL+N  G
Sbjct: 68  DIADEEAVAAAFARIDAEHGRLDILVNNVG 97

Length = 256

>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVME 81
            G  A+VTG + G+GA   R  A RG   +++  RN   G     A  ++   AK   ++
Sbjct: 5   DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE--AQAAELEALGAKAVFVQ 62

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
            DLS +   R+  +        L+ L+N AG+   GT    S +  + HFA N    F+
Sbjct: 63  ADLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFF 121

Length = 260

>gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
                 AIVTGA+ GIG      LA  G  V++AD N      V   IV     A    +
Sbjct: 3   RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAI--AV 60

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGICG 115
           ++D+S   S +  A    +    ++ L+N A I G
Sbjct: 61  QVDVSDPDSAKAMADATVSAFGGIDYLVNNAAIYG 95

Length = 250

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 32/136 (23%), Positives = 45/136 (33%), Gaps = 19/136 (13%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
               G  A++TG    +G    + LA  G  V + DRN      V   I      A    
Sbjct: 6   FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEAL--A 63

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAG-----------------ICGTPFMLSK 122
           ++ D+    S+ +          P +ILIN AG                    T F L +
Sbjct: 64  VKADVLDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDE 123

Query: 123 DNIELHFATNHLGAFY 138
           +  E  F  N LG   
Sbjct: 124 EGFEFVFDLNLLGTLL 139

Length = 278

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGA+ G+G      LA  G  V++  R+     +  V  V      +   ++ D++
Sbjct: 8   VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL-GRRAQAVQADVT 66

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
             A++    +    R   ++IL+N AGI
Sbjct: 67  DKAALEAAVAAAVERFGRIDILVNNAGI 94

Length = 249

>gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G T ++TG +SGIG    +     G  VI+  RN     + K      NP    +V   D
Sbjct: 5   GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE----NPEIHTEVC--D 58

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           ++   S R+           LN+LIN AGI
Sbjct: 59  VADRDSRRELVEWLKKEYPNLNVLINNAGI 88

Length = 245

>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 25/88 (28%), Positives = 41/88 (46%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           ++TG  SG+G  T   LA  G  + + D N       K A++   P A+V +++ D+S  
Sbjct: 7   LITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKADVSDE 66

Query: 88  ASVRKFASDFTARALPLNILINKAGICG 115
           A V  +      +   ++   N AGI G
Sbjct: 67  AQVEAYVDATVEQFGRIDGFFNNAGIEG 94

Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV 69
          T   D  G  A+VTGAS GIG    ++LA +G HVI++ R +   + V  AIV
Sbjct: 1  TNLFDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIV 53

Length = 252

>gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
               G  AIVTG + G+G    R+L   G  V+++D     G+     +           
Sbjct: 1   NRLKGKVAIVTGGARGLGLAHARLLVAEGAKVVLSDILDEEGQAAAAEL-----GDAARF 55

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             LD++                  L++L+N AGI
Sbjct: 56  FHLDVTDEDGWTAVVDTAREAFGRLDVLVNNAGI 89

This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247

>gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM-E 81
            G  AIVTGA +GIGA     LA  G  V++AD +  A + V   I     A +VDV  E
Sbjct: 2   EGKVAIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQIAGGALALRVDVTDE 61

Query: 82  LDLSSL--ASVRKFASDFTARALPLNILINKAGI 113
             +++L   +V +F          L++L+N AG 
Sbjct: 62  QQVAALFERAVEEFGG--------LDLLVNNAGA 87

These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246

>gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           I  AG  AIVTG ++ IGA   R L   G  V + D +   G  V  ++       +   
Sbjct: 2   IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARF 56

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKA 111
           +  D++  A++ +  +   AR   ++IL+N A
Sbjct: 57  IATDITDDAAIERAVATVVARFGRVDILVNLA 88

Length = 261

>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           ++TGAS GIG      LA  G  +++  RN        +A  +  P  +   +  DL+S 
Sbjct: 9   LLTGASGGIGQALAEALAAAGARLLLVGRNAEKLE--ALAARLPYP-GRHRWVVADLTSE 65

Query: 88  ASVRKFASDFTARALPLNILINKAGI 113
           A               +N+LIN AG+
Sbjct: 66  AGREAVL-ARAREMGGINVLINNAGV 90

Length = 263

>gnl|CDD|219957 pfam08659, KR, KR domain

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAI-VMQNPAAKVDVMELD 83
           T +VTG   G+G E  R LA RG  H+++  R+ A   + +  +  ++   A+V V+  D
Sbjct: 2   TYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACD 61

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           +S   +VR   ++  A   PL  +I+ AG+
Sbjct: 62  VSDRDAVRALLAEIRADGPPLRGVIHAAGV 91

This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181

>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D AG  A++TGA+SG G    R+ A  G+ +++AD    A    +    ++   A+V  +
Sbjct: 3   DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALD--RAVAELRAQGAEVLGV 60

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             D+S  A V   A     R   +++L N AG+
Sbjct: 61  RTDVSDAAQVEALADAALERFGAVHLLFNNAGV 93

Length = 287

>gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 25  VTAIVTGASSGIGAETTRVLALR----GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
              +VTGAS G G    + LA      G  ++++ RN  A R +K  I  +    +V  +
Sbjct: 1   AVCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRV 60

Query: 81  ELDLSSLASVRKFASDFTARALPLN----ILINKAGICG 115
            LDL + A + +          P      +LIN AG  G
Sbjct: 61  SLDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTLG 99

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256

>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A++TG S GIG      L   G  V +  R+     +    +   N    V  +  
Sbjct: 5   KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAEL---NNKGNVLGLAA 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAFY 138
           D+   A V++      A    L++LI  AG+        L+ +   L   TN  GAFY
Sbjct: 62  DVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFY 119

Length = 237

>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 29  VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA 88
           +TGA+SGIG  T  + A  G  V   D N A    +   +     A       LD++  A
Sbjct: 6   ITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL----GAGNAWTGALDVTDRA 61

Query: 89  SVRKFASDFT-ARALPLNILINKAGI 113
           +     +DF  A    L++L N AGI
Sbjct: 62  AWDAALADFAAATGGRLDVLFNNAGI 87

Length = 260

>gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G    +TG   G+G  T   LA RG  V +  R  A        +    PA  + +  +D
Sbjct: 7   GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV----PADALRIGGID 62

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAFY 138
           L    + R+   +   +   L+ L+N AG    GT      D  +  +  N      
Sbjct: 63  LVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLN 119

Length = 239

>gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D  G  A+VTG+S GIG      LA  G  VI+  R+ A  +    A  ++        +
Sbjct: 7   DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA--KLAAAAESLKGQGLSAHAL 64

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             D++   +VR     F A   P++IL+N AG+
Sbjct: 65  AFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGM 97

Length = 255

>gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 30/102 (29%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM--ELDL 84
           A+VTGA+ GIG      LA RG +VI+  R                   K+D +  E++ 
Sbjct: 4   AVVTGATDGIGKAYAEELAKRGFNVILISRT----------------QEKLDAVAKEIEE 47

Query: 85  SSLASVRKFASDFTARA------------LPLNILINKAGIC 114
                 +  A+DF+A              L + IL+N  GI 
Sbjct: 48  KYGVETKTIAADFSAGDDIYERIEKELEGLDIGILVNNVGIS 89

This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA--KVDVM 80
                ++TG S G+G      LA  G  VI+ D +   GR    A+     AA  K   +
Sbjct: 5   DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGL 64

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             D+   A+ R            L+IL+N AGI
Sbjct: 65  AFDVRDFAATRAALDAGVEEFGRLDILVNNAGI 97

Length = 249

>gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 26/91 (28%), Positives = 39/91 (42%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA++TGAS GIG    R     G  V++  R+  A    +  +  + P  +V  +  
Sbjct: 8   DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAA 67

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D+S     R            L+IL+N AG 
Sbjct: 68  DVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98

Length = 257

>gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
             TAIVTG   GIG  T R  A  G  V + D N  A    KVA  ++           D
Sbjct: 3   DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAE--KVAADIRAKGGNAQAFACD 60

Query: 84  LSSLASVRKFASDFTARALPLNILINKAG 112
           ++   SV    +       P+++L+N AG
Sbjct: 61  ITDRDSVDTAVAAAEQALGPVDVLVNNAG 89

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250

>gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TGA+  IG    + L   G  +I+AD N  A   +K  +       +V  +ELD++
Sbjct: 4   IILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEELT-NLYKNRVIALELDIT 62

Query: 86  SLASVRKFASDFTARALPLNILINKAGI----CGTPFM-LSKDNIELHFATNHLGAF 137
           S  S+++    +  +   ++ILIN A       G+ F     +        N  GAF
Sbjct: 63  SKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAF 119

This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTGAS GIG      LA +G +V++   +  AG +  VA +      K   ++ D
Sbjct: 5   GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL-GGKALAVQGD 63

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           +S   SV +   +  A    ++IL+N AGI
Sbjct: 64  VSDAESVERAVDEAKAEFGGVDILVNNAGI 93

Length = 248

>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           +D AG  A+VTGA  GIG  T + LA  G  V+   R  A       ++V + P   ++ 
Sbjct: 3   LDFAGKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQAD----LDSLVRECPG--IEP 56

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAF 137
           + +DLS   +  +          P+++L+N A +    PF+ ++K+  +  F  N     
Sbjct: 57  VCVDLSDWDATEE----ALGSVGPVDLLVNNAAVAILQPFLEVTKEAFDRSFDVNVRAVI 112

Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244

>gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 3/113 (2%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTG S GIG      LA RG  V++  R  +     +VA  ++    K  V+  D+S 
Sbjct: 1   ALVTGGSRGIGKAIALRLAERGADVVINYRK-SKDAAAEVAAEIEELGGKAVVVRADVSQ 59

Query: 87  LASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAF 137
              V +  +    R   L++L++ A      P   L+  + +    TN     
Sbjct: 60  PQDVEEMFAAVKERFGRLDVLVSNAAAGAFRPLSELTPAHWDAKMNTNLKALV 112

This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 11/116 (9%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            +VTGA+ GIG    +  A  G  V++ADRN+   R+        +       + +D+S 
Sbjct: 8   VLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARE-----RADSLGPDHHALAMDVSD 62

Query: 87  LASVRKFASDFTARALPLNILINKAGICGTPFM-----LSKDNIELHFATNHLGAF 137
            A +R+           +++L+N AG+   P M      + +      A N  GA+
Sbjct: 63  EAQIREGFEQLHREFGRIDVLVNNAGVTD-PTMTATLDTTLEEFARLQAINLTGAY 117

Length = 520

>gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 26  TAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
             I+TGAS GIG      L  RG    V++  R+    +++K  +    P  +V  ++ D
Sbjct: 1   VIILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQELKEELR---PGLRVTTVKAD 57

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFM----LSKDNIELHFATN 132
           LS  A V +            ++LIN AG  G P      +  D ++ +F  N
Sbjct: 58  LSDAAGVEQLLEAIRKLDGERDLLINNAGSLG-PVSKIEFIDLDELQKYFDLN 109

Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 19  GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVD 78
            +D  G   +VTGA+ GIG      L  RG     A +  AA RD + ++    P  +V 
Sbjct: 1   MMDIKGKVVLVTGANRGIGRAFVEQLLARG-----AAKVYAAARDPE-SVTDLGP--RVV 52

Query: 79  VMELDLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFMLSK--DNIELHFATNHLG 135
            ++LD++  ASV   A      A  + IL+N AGI      +L    D +     TN+ G
Sbjct: 53  PLQLDVTDPASVAAAA----EAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFG 108

Length = 238

>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 29  VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA 88
           +TGA+SG+G       A  G  + +AD N   G +  + ++ +           D+   +
Sbjct: 5   ITGAASGLGRAIALRWAREGWRLALADVNEEGGEET-LKLL-REAGGDGFYQRCDVRDYS 62

Query: 89  SVRKFASDFTARALPLNILINKAGI 113
            +   A     +   +++++N AG+
Sbjct: 63  QLTALAQACEEKWGGIDVIVNNAGV 87

Length = 270

>gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 29  VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA 88
           +TG+S G+G    R L  +G  V++  R+     D K A     P A   V+  DLSSLA
Sbjct: 12  ITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADAKAAC----PGAAG-VLIGDLSSLA 66

Query: 89  SVRKFASDFTARALPLNILINKAGICGTPFMLSKD 123
             RK A    A     + +I+ AGI   P   + D
Sbjct: 67  ETRKLADQVNAIG-RFDAVIHNAGILSGPNRKTPD 100

Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260

>gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G T ++TGA   IG+   + +   G  VI AD +  A  ++  ++  +  + K+ ++ELD
Sbjct: 4   GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELD 63

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTP---------FMLSKDNIELHFATNHL 134
           ++   S+ +F S    +   ++  +N    C  P         F +S D+   +  + HL
Sbjct: 64  ITDQESLEEFLSKSAEKYGKIDGAVN----CAYPRNKDYGKKFFDVSLDDFNENL-SLHL 118

Query: 135 GAFY 138
           G+ +
Sbjct: 119 GSSF 122

Length = 256

>gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV--MQNPAAKVDVME 81
           G  AIVTG + GIG   T  LA  G  V++   N  + ++    +V  +      V  ++
Sbjct: 6   GKVAIVTGGAKGIGKAITVALAQEGAKVVI---NYNSSKEAAENLVNELGKEGHDVYAVQ 62

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGI 113
            D+S +    +   +       ++IL+N AGI
Sbjct: 63  ADVSKVEDANRLVEEAVNHFGKVDILVNNAGI 94

Length = 247

>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            AIVTGAS GIG      LA RG  + + D          VA V+     +    + D+ 
Sbjct: 3   VAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAA-GRRAIYFQADIG 61

Query: 86  SLASVRKFASDFTARAL-PLNILINKAGICGTP----FMLSKDNIELHFATNHLGAFY 138
            L+   +   D        L+ L+N AGI   P      L++D+ +   A N  G F+
Sbjct: 62  ELSD-HEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFF 118

This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 10  SSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV 69
           +STA+  +   ++  V   +TG + GIG       A  G  +++ DR+    + +  A+ 
Sbjct: 256 ASTAQAPSPLAESPRV-VAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG 314

Query: 70  MQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
            ++ + + D+     +  A+V    +   AR   L++L+N AGI
Sbjct: 315 DEHLSVQADI-----TDEAAVESAFAQIQARWGRLDVLVNNAGI 353

Length = 520

>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGASSGIG  T R LA +G  V  A R +    D+         +  V  + LD++
Sbjct: 5   VALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA--------SLGVHPLSLDVT 56

Query: 86  SLASVRKFASDFTARALPLNILINKAG 112
             AS++       A    +++L+N AG
Sbjct: 57  DEASIKAAVDTIIAEEGRIDVLVNNAG 83

Length = 273

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG   +VTGA+ GIGAE  R L  RG  + + D   A    +   +       +V  +  
Sbjct: 8   AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVA 64

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D++ LA+++  A +   R   +++++  AGI
Sbjct: 65  DVTDLAAMQAAAEEAVERFGGIDVVVANAGI 95

Length = 296

>gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 29  VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA 88
           +TGA+SGIG ET  + A  G  V + D +      +   +  +N  A      LD++  A
Sbjct: 5   ITGAASGIGRETALLFARNGWFVGLYDIDEDGLAALAAELGAENVVAGA----LDVTDRA 60

Query: 89  SVRKFASDFTARA-LPLNILINKAGI 113
           +     +DF A     L+ L N AG+
Sbjct: 61  AWAAALADFAAATGGRLDALFNNAGV 86

This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227

>gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           TA+VTGA+ GIG    R     G  V+  D + AA      A       A+   +  DL+
Sbjct: 4   TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALA----AFADALGDARFVPVACDLT 59

Query: 86  SLASVRKFASDFTARALPLNILINKAG 112
             AS+    ++  A   P+++L+  AG
Sbjct: 60  DAASLAAALANAAAERGPVDVLVANAG 86

Length = 257

>gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTG ++GIG    R+    G  V + D     G++V  ++        V     D
Sbjct: 18  GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL---GGEPNVCFFHCD 74

Query: 84  LSSLASVRKFASDFTARAL-PLNILINKAGICGTP 117
           ++    V + A DFT      L+I++N AG+ G P
Sbjct: 75  VTVEDDVSR-AVDFTVDKFGTLDIMVNNAGLTGPP 108

Length = 280

>gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 19  GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVD 78
           G+  A    IVTG S GIG    R     G  V+   R  AAG+ ++  +    P +   
Sbjct: 4   GLRYADKVVIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCKF 63

Query: 79  VMELDLSSLASVRKFASDFTARALPLNILINKAG 112
           V   D++    ++   S    R   ++ L+N AG
Sbjct: 64  VP-CDVTKEEDIKTLISVTVERFGRIDCLVNNAG 96

These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261

>gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV 64
          AG  A++TG  SGIG  T R LA  G  V++ D +  AG+  
Sbjct: 6  AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA 47

Length = 255

>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           AIVTG ++GIG      LA  G  V++AD        V  AI  Q    +   +E +++S
Sbjct: 2   AIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAI--QQAGGQAIGLECNVTS 59

Query: 87  LASVRKFASDFTARALPLNILINKAG 112
              +        ++   + IL+N AG
Sbjct: 60  EQDLEAVVKATVSQFGGITILVNNAG 85

This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 22/129 (17%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           ++  G   IVTG SSGIG    + L   G +V+ AD +   G+      V          
Sbjct: 5   LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQHENYQFV---------- 54

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGICG-----------TPFMLSKDNIELH 128
              D+SS   V    ++   +   ++ L+N AGI               + L++   +  
Sbjct: 55  -PTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKM 113

Query: 129 FATNHLGAF 137
           F  N  G F
Sbjct: 114 FNINQKGVF 122

Length = 266

>gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            I+TGAS GIGA T  + A RG  V +   RN  A   V  AI  Q   A    +  D++
Sbjct: 5   MIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEAL--AVAADVA 62

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPFMLSK-DNIELH--FATNHLGAF 137
             A V +           L+ L+N AGI      L + D   L   FATN +G+F
Sbjct: 63  DEADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSF 117

Length = 248

>gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 16  VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA 75
           V +  D +G TA+VTG S G+G +    L   G  V+++ R      +    +     A 
Sbjct: 4   VLELFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL----EAL 59

Query: 76  KVDVMEL--DLSSLASVRKFASDFTARALPLNILINKAG 112
            +D + +  D++  A + + A +   R   ++IL+N AG
Sbjct: 60  GIDALWIAADVADEADIERLAEETLERFGHVDILVNNAG 98

Length = 259

>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 26/86 (30%), Positives = 44/86 (51%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           ++TGASSG+GA   R  A +G  + +  R      ++K  ++ + P  KV V  LD++  
Sbjct: 6   LITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65

Query: 88  ASVRKFASDFTARALPLNILINKAGI 113
             V +  ++F      L+ +I  AGI
Sbjct: 66  DQVFEVFAEFRDELGGLDRVIVNAGI 91

Length = 248

>gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGAS GIG  T R+L   G  V +  R+ A     ++A         V  +  D+  
Sbjct: 3   ALVTGASRGIGEATARLLHAEGYRVGICARDEA-----RLAAAAAQELEGVLGLAGDVRD 57

Query: 87  LASVRKFASDFTARAL-PLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAFY 138
            A VR+   D    A   L+ L+N AG+        L+ +   L   TN  GAFY
Sbjct: 58  EADVRRAV-DAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLTGAFY 111

This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226

>gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           AIVTG S GIG      L   G +VI  D    +                VD  ++D+S+
Sbjct: 9   AIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS-------------YNDVDYFKVDVSN 55

Query: 87  LASVRKFASDFTARALPLNILINKAGI 113
              V K      ++   ++IL+N AGI
Sbjct: 56  KEQVIKGIDYVISKYGRIDILVNNAGI 82

Length = 258

>gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA+VTG + GIG      LA  G  V    RN     +       +    KV+    
Sbjct: 5   EGKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKELDECLTE--WREKGFKVEGSVC 62

Query: 83  DLSSLASVRKFASDFTARAL--PLNILINKAG--ICGTPFMLSKDNIELHFATNHLGAF 137
           D+SS  S R+   D  A      LNIL+N AG  I       ++++  L  +TN   A+
Sbjct: 63  DVSS-RSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTNFEAAY 120

This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251

>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTGA++G+G      LA  G  ++ A R+  +    +V  +      +   +  
Sbjct: 4   EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEAL----GRRFLSLTA 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           DLS + +++            ++IL+N AGI
Sbjct: 60  DLSDIEAIKALVDSAVEEFGHIDILVNNAGI 90

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248

>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTG   GIG    R LA  G  + + DR             ++    +V     D++
Sbjct: 4   VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE-LAATQQELRALGVEVIFFPADVA 62

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
            L++         A    ++ L+N AG+
Sbjct: 63  DLSAHEAMLDAAQAAWGRIDCLVNNAGV 90

Length = 256

>gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI-VMQNPAAKVDVMELDLSS 86
           +VTGAS GIG E     A  G  VI+  RN    R V   I        +  +++L   +
Sbjct: 8   LVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEEGGRQPQWFILDLLTCT 67

Query: 87  LASVRKFASDFTARALPLNILINKAGICGTPFMLSKDN 124
             + ++ A         L+ +++ AG+ G    LS+ N
Sbjct: 68  SENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQN 105

Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236

>gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 28/90 (31%), Positives = 44/90 (48%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTG++SGIG    R LA  G ++++     AA  +   A +      KV     D
Sbjct: 2   GKVALVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGLAAKHGVKVLYHGAD 61

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           LS  A++    +    +   ++IL+N AGI
Sbjct: 62  LSKPAAIEDMVAYAQRQFGGVDILVNNAGI 91

DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV-KVAIVMQNPAAKVDVMELDL 84
           T +VTGA+ GIG      L   G     A +  AA RD    A ++     KV  + LD+
Sbjct: 5   TVLVTGANRGIGKAFVESLLAHG-----AKKVYAAVRDPGSAAHLVAKYGDKVVPLRLDV 59

Query: 85  SSLASVRKFASDFTARALPLNILINKAGI 113
           +   S++  A    A+A  ++++IN AG+
Sbjct: 60  TDPESIKAAA----AQAKDVDVVINNAGV 84

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 17/117 (14%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           + ++TG SSGIG E    L  RG  V+ A R        K   V +  +     + LDL 
Sbjct: 4   SVLITGCSSGIGLEAALELKRRGYRVLAACR--------KPDDVARMNSLGFTGILLDLD 55

Query: 86  SLASVRKFASDFTA----RALPLNILINKAG--ICGTPFMLSKDNIELHFATNHLGA 136
              SV + A +  A    R   L  L N AG  + G    +S+  +E  F+TN  G 
Sbjct: 56  DPESVERAADEVIALTDNR---LYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGT 109

Length = 256

>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV---DVM 80
           G  AI+TGASSGIG    ++ A  G  V++  R  A    +   I  +   A     DV 
Sbjct: 6   GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVR 65

Query: 81  ELDLSSLASVRKFASDFTARALP----LNILINKAGICG 115
           +           +A    A A+     L+I  N AG  G
Sbjct: 66  DEA---------YAKALVALAVERFGGLDIAFNNAGTLG 95

Length = 254

>gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G TA++TG++ GIG    +     G  V +AD N+ A R     I    PAA    + LD
Sbjct: 3   GKTALITGSARGIGRAFAQAYVREGARVAIADINLEAARATAAEI---GPAAC--AISLD 57

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFML--SKDNIELHFATNHLGAFY 138
           ++  AS+ +  +    R   ++IL+N A +     ++  ++++ +  FA N  G  +
Sbjct: 58  VTDQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVDITRESYDRLFAINVSGTLF 114

This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254

>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  A+VTG + GIGA T   L   G  V+   R+        V  V    AA       
Sbjct: 8   AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLPEGVEFV----AA------- 56

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAG 112
           DL++       A     R   ++IL++  G
Sbjct: 57  DLTTAEGCAAVARAVLERLGGVDILVHVLG 86

Length = 260

>gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 19/97 (19%)

Query: 25  VTAIVTGASSGIGAETTRVLALRGVHVIMADRN----MAAGRDVKVAIVMQNPAAKVDVM 80
           V AIVTG S G+GA     L   G+ V+   R+    +AA    ++A V           
Sbjct: 2   VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEV----------- 50

Query: 81  ELDLSSLASVRKFASDFTARALPLN----ILINKAGI 113
           ELDLS  A+   + +     A        +LIN AG 
Sbjct: 51  ELDLSDAAAAAAWLAGDLLAAFVDGASRVLLINNAGT 87

Length = 243

>gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTG   GIG    + LA  G + + A+      R                V+E D+SS
Sbjct: 3   ALVTGGMGGIGTAICQRLAKDG-YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS 61

Query: 87  LASVRKFASDFTARALPLNILINKAGI 113
             S +   +   A   P+++L+N AGI
Sbjct: 62  FESCKAAVAKVEAELGPIDVLVNNAGI 88

This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242

>gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             +VTG+  GIG      LA  G  V++  +  A   +  + +V +N    + V+  D+S
Sbjct: 8   VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA-DVS 66

Query: 86  SLASVRKFASDFTARALPLNILINKAGI-CGTPFMLSKDN-IELHFATNHLGAFY 138
           +       A     R    +IL+N AG+   +PF+   D  I+ H +T+     Y
Sbjct: 67  TREGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIY 121

Length = 252

>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            AIVT + SGIG     +LA +G  + +   +   G       V  +   + ++ +LDLS
Sbjct: 4   VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH-GVRAEIRQLDLS 62

Query: 86  SLASVRKFASDFTARALPLNILINKAGI-CGTPFM-LSKDNIELHFATNHLGAF 137
            L    +       R   +++L+N AG     PF+ +  D     F  +  GAF
Sbjct: 63  DLPEGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAF 116

Length = 256

>gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           ++TGASSGIG  T    A RG  V++A R+  A  ++   +  +    +   +  D++  
Sbjct: 4   VITGASSGIGRATALAFAERGAKVVLAARSAEALHELAREV--RELGGEAIAVVADVADA 61

Query: 88  ASVRKFASDFTARALPLNILINKAGI 113
           A V + A     R   ++  +N AG+
Sbjct: 62  AQVERAADTAVERFGRIDTWVNNAGV 87

These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233

>gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA++TG +SGIG ET R     G  V +  R+ A+    +  +          V+  
Sbjct: 5   QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRA 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D   +A+ +  A         L+ +   AG+
Sbjct: 60  DAGDVAAQKALAQALAEAFGRLDAVFINAGV 90

Length = 249

>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           +  G TA+VTGA+SGIG E    LA  G  V +AD N        VA  +     K   +
Sbjct: 4   NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGAN--AVADEINKAGGKAIGV 61

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
            +D+++  +V         R   ++IL++ AGI
Sbjct: 62  AMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94

Length = 262

>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
            D +G  A+VTGAS GIG E  R+L  +G  V      +   R  K+  +      +V +
Sbjct: 2   FDLSGRKALVTGASGGIGEEIARLLHAQGAIV-----GLHGTRVEKLEALAAELGERVKI 56

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
              +LS    V+       A    ++IL+N AGI
Sbjct: 57  FPANLSDRDEVKALGQKAEADLEGVDILVNNAGI 90

Length = 245

>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 22/88 (25%), Positives = 33/88 (37%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+V G    +GA     LA  G  V +AD N     +V   I  +           D +
Sbjct: 4   VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADAT 63

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
           S  SV   +         +++L+  AGI
Sbjct: 64  SEQSVLALSRGVDEIFGRVDLLVYNAGI 91

Length = 259

>gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+V GASSGIGA T   LA  G  V +  R +    ++   I      A      LD++
Sbjct: 12  PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAV--AFPLDVT 69

Query: 86  SLASVRKFASDFTARALPLNILINKAG 112
              SV+ F +        + +L++ AG
Sbjct: 70  DPDSVKSFVAQAEEALGEIEVLVSGAG 96

Length = 274

>gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 28  IVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           ++TG   G+G    R LA RG  H+++  R   A R    A +++   A+V V+  D++ 
Sbjct: 154 LITGGLGGLGLLVARWLAARGARHLVLLSRRGPAPRAAARAALLRAGGARVSVVRCDVTD 213

Query: 87  LASVRKFASDFTARALPLNILINKAGI 113
            A++    ++  A   PL  +I+ AG+
Sbjct: 214 PAALAALLAEL-AAGGPLAGVIHAAGV 239

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375

>gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHV-IMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
             ++TGAS GIG  T  + A RG  V I   R+ AA  +   A+  +    +  V+  D+
Sbjct: 4   VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAV--RAAGGRACVVAGDV 61

Query: 85  SSLASVRKFASDFTARALPLNILINKAGICGTPFM----LSKDNIELHFATNHLGAF 137
           ++ A V        +    L+ L+N AGI   P M    +    +   F TN LGA+
Sbjct: 62  ANEADVIAMFDAVQSAFGRLDALVNNAGIVA-PSMPLADMDAARLRRMFDTNVLGAY 117

Length = 248

>gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
            ++TGAS+G+G  T R  A RG  V++  R    
Sbjct: 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEG 44

Length = 334

>gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           AIVTGAS GIGA   R LA  G  V +     AA  D ++   ++    +   ++ D++ 
Sbjct: 8   AIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAAD-ELVAEIEAAGGRAIAVQADVAD 66

Query: 87  LASVRKFASDFTARALPLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAF 137
            A+V +           +++L+N AG+   GT      ++ +   ATN  GAF
Sbjct: 67  AAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAF 119

Length = 245

>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP---AAKVDVMELD 83
           A+VTGA  GIG    + L   G  V + D N    +     +        A K DV + D
Sbjct: 5   ALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRD 64

Query: 84  --LSSLASVRKFASDFTARALPLNILINKAGI 113
              +++  V     D        N+++N AG+
Sbjct: 65  QVFAAVRQVVDTFGDL-------NVVVNNAGV 89

Length = 256

>gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 26/112 (23%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           T ++TGA+SGIGA T  +L   G  VI        G D++ A V             DLS
Sbjct: 1   TIVITGAASGIGAATAELLEDAGHTVI--------GIDLREADV-----------IADLS 41

Query: 86  SLASVRKFASDFTARALP-LNILINKAGICGTPFMLSKDNIELHFATNHLGA 136
           +        +D  AR    L+ L+N AG+ GT          L    N+ G 
Sbjct: 42  TPEGRAAAIADVLARCSGVLDGLVNCAGVGGTT------VAGLVLKVNYFGL 87

Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTG + GIG      LA +G+++++  RN    +DV  +I  +    ++  + +D
Sbjct: 53  GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVD 112

Query: 84  LSSLAS--VRKFASDFTARALPLNILINKAGI 113
            S      V++     T   L + +LIN  G+
Sbjct: 113 FSGDIDEGVKRIKE--TIEGLDVGVLINNVGV 142

Length = 320

>gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVD-VMELDLS 85
           A +TGA+ G+G    R +A +G  V + D N AAG D   A +       V      D++
Sbjct: 2   AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVT 61

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
             A  +   +        L++L+N AG+
Sbjct: 62  DEAQWQALLAQAADAMGGLSVLVNNAGV 89

Length = 251

>gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            I+TG S G+G      L  +G HVI   R      + ++  + +   + +    LDL  
Sbjct: 4   VIITGTSQGLGEAIANQLLEKGTHVISISR----TENKELTKLAEQYNSNLTFHSLDLQD 59

Query: 87  LASVRKFASDFTARALPLNI----LINKAGI 113
           +  +    ++  +     N+    LIN AG+
Sbjct: 60  VHELETNFNEILSSIQEDNVSSIHLINNAGM 90

Length = 251

>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G   +VTGA+ GIG      LA  G  V++ DR+     +V   I+         V   D
Sbjct: 4   GKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRS-ELVHEVLAEILAA--GDAAHVHTAD 60

Query: 84  LSSLASVRKFASDFTARALPLNILINKAG 112
           L + A  +        R   +++LIN  G
Sbjct: 61  LETYAGAQGVVRAAVERFGRVDVLINNVG 89

DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM 58
          A+VTGAS GIGA   R L   G+ V+   R +
Sbjct: 9  ALVTGASVGIGAAVARALVQHGMKVVGCARRV 40

Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           T  +TGASSG G   T  L  RG  V    R   A  D+K          ++ V++LD++
Sbjct: 4   TWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLK-----ARYGDRLWVLQLDVT 58

Query: 86  SLASVRKFASDFTARALPLNILINKAG--ICGTPFMLSKDNIELHFATNHLG 135
             A+VR       A    ++++++ AG  + G    LS   I     TN +G
Sbjct: 59  DSAAVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIG 110

Length = 276

>gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMA--DRNMAAGRDVKVAIVMQNPAAKVDVME 81
           G  AIVTG ++G+G      LA  G  +I+     N    R +     ++    KV  ++
Sbjct: 15  GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRL-----IEKEGRKVTFVQ 69

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGI 113
           +DL+   S  K   +       ++IL+N AG 
Sbjct: 70  VDLTKPESAEKVVKEALEEFGKIDILVNNAGT 101

Length = 258

>gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           IVTG +SGIGA  +  LA  G   ++  R+     D + A  ++    + + +++DL+  
Sbjct: 11  IVTGGASGIGAAISLRLAEEGAIPVIFGRSA---PDDEFAEELRALQPRAEFVQVDLTDD 67

Query: 88  ASVRKFASDFTARALPLNILINKAGI 113
           A  R       A+   ++ L+N AG+
Sbjct: 68  AQCRDAVEQTVAKFGRIDGLVNNAGV 93

Length = 258

>gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 29  VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP-AAKVDVMELDLSSL 87
           +TGASSGIG    R  A +G  + +  R      D   A   + P AA+V V   D+   
Sbjct: 7   ITGASSGIGQALAREYARQGATLGLVARR----TDALQAFAARLPKAARVSVYAADVRDA 62

Query: 88  ASVRKFASDFTARALPLNILINKAGI-CGT 116
            ++   A+DF A     +++I  AGI  GT
Sbjct: 63  DALAAAAADFIAAHGLPDVVIANAGISVGT 92

Length = 257

>gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD 63
          +G  A+VTG ++GIG  T    A  G  V++ADR+ A G +
Sbjct: 6  SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEE 46

Length = 253

>gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 26 TAIVTGASSGIGAETTRVLALRGVHVIMADR 56
          + ++TG SSGIGA   R L   G  V    R
Sbjct: 6  SILITGCSSGIGAYCARALQSDGWRVFATCR 36

Length = 277

>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A++T A+ GIG       A  G +VI  D N     + K+  + + P     V  L
Sbjct: 1   DGKVALITAAAQGIGRAIALAFAREGANVIATDIN-----EEKLKELERGPGITTRV--L 53

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATN 132
           D++    V   A +       +++L N AG    G+      D+ +     N
Sbjct: 54  DVTDKEQVAALAKEEGR----IDVLFNCAGFVHHGSILDCEDDDWDFAMNLN 101

Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241

>gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-----AAGRDVKVAIVMQNPAA 75
             AG   +VTG S GIG    +     G  VI++ R       AA         +  PA 
Sbjct: 3   SVAGKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEELSAYGECIAIPA- 61

Query: 76  KVDVMELDLSSLASVRKFASDFTARALPLNILINKAG 112
                  DLSS   +    +    R+  L++L+N AG
Sbjct: 62  -------DLSSEEGIEALVARVAERSDRLDVLVNNAG 91

Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.96
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.95
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.95
KOG1208	314	consensus Dehydrogenases with different specificit	99.94
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.93
PRK05854	313	short chain dehydrogenase; Provisional	99.93
KOG0725	270	consensus Reductases with broad range of substrate	99.92
PRK07062	265	short chain dehydrogenase; Provisional	99.92
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK07478	254	short chain dehydrogenase; Provisional	99.91
PRK08339	263	short chain dehydrogenase; Provisional	99.91
PRK05867	253	short chain dehydrogenase; Provisional	99.91
PRK06139	330	short chain dehydrogenase; Provisional	99.91
PRK05876	275	short chain dehydrogenase; Provisional	99.91
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK07063	260	short chain dehydrogenase; Provisional	99.91
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.91
PRK06197	306	short chain dehydrogenase; Provisional	99.91
PRK08303	305	short chain dehydrogenase; Provisional	99.91
PRK07791	286	short chain dehydrogenase; Provisional	99.91
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.9
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.9
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.9
PRK08862	227	short chain dehydrogenase; Provisional	99.9
PRK07109	334	short chain dehydrogenase; Provisional	99.9
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.9
PRK08589	272	short chain dehydrogenase; Validated	99.9
PRK05872	296	short chain dehydrogenase; Provisional	99.9
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.9
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.9
PRK06114	254	short chain dehydrogenase; Provisional	99.9
PRK09242	257	tropinone reductase; Provisional	99.89
PRK08265	261	short chain dehydrogenase; Provisional	99.89
PRK06196	315	oxidoreductase; Provisional	99.89
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.89
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.89
PLN02253	280	xanthoxin dehydrogenase	99.89
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.89
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.89
PRK06194	287	hypothetical protein; Provisional	99.89
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.89
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.89
PRK05717	255	oxidoreductase; Validated	99.89
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.89
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.89
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.89
PRK05866	293	short chain dehydrogenase; Provisional	99.89
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.89
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.88
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.88
PRK06172	253	short chain dehydrogenase; Provisional	99.88
PRK08278	273	short chain dehydrogenase; Provisional	99.88
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.88
PRK07576	264	short chain dehydrogenase; Provisional	99.88
PRK07035	252	short chain dehydrogenase; Provisional	99.88
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.88
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.88
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.88
PRK06128	300	oxidoreductase; Provisional	99.88
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.88
PRK07677	252	short chain dehydrogenase; Provisional	99.88
PRK07890	258	short chain dehydrogenase; Provisional	99.88
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.88
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.87
PRK07814	263	short chain dehydrogenase; Provisional	99.87
PRK08643	256	acetoin reductase; Validated	99.87
PRK06398	258	aldose dehydrogenase; Validated	99.87
PRK07067	257	sorbitol dehydrogenase; Provisional	99.87
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.87
PRK07825	273	short chain dehydrogenase; Provisional	99.87
PRK09186	256	flagellin modification protein A; Provisional	99.87
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.87
PRK08628	258	short chain dehydrogenase; Provisional	99.87
PRK07985	294	oxidoreductase; Provisional	99.87
PRK07831	262	short chain dehydrogenase; Provisional	99.87
PRK08251	248	short chain dehydrogenase; Provisional	99.87
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.87
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.87
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.87
PRK06484	520	short chain dehydrogenase; Validated	99.87
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.87
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.86
PRK07774	250	short chain dehydrogenase; Provisional	99.86
PRK06500	249	short chain dehydrogenase; Provisional	99.86
PRK06138	252	short chain dehydrogenase; Provisional	99.86
PRK12939	250	short chain dehydrogenase; Provisional	99.86
PRK06949	258	short chain dehydrogenase; Provisional	99.86
PRK07856	252	short chain dehydrogenase; Provisional	99.86
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.86
PRK05855	582	short chain dehydrogenase; Validated	99.86
PRK08226	263	short chain dehydrogenase; Provisional	99.86
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.86
PRK06484	520	short chain dehydrogenase; Validated	99.86
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.86
PRK06125	259	short chain dehydrogenase; Provisional	99.86
PRK12743	256	oxidoreductase; Provisional	99.86
PRK09134	258	short chain dehydrogenase; Provisional	99.86
PRK12744	257	short chain dehydrogenase; Provisional	99.86
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK12747	252	short chain dehydrogenase; Provisional	99.85
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.85
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.85
PRK07024	257	short chain dehydrogenase; Provisional	99.85
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.85
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.85
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.85
PRK05875	276	short chain dehydrogenase; Provisional	99.85
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.85
PRK05599	246	hypothetical protein; Provisional	99.85
PLN00015	308	protochlorophyllide reductase	99.85
PRK06182	273	short chain dehydrogenase; Validated	99.85
PRK09072	263	short chain dehydrogenase; Provisional	99.85
PRK08263	275	short chain dehydrogenase; Provisional	99.85
PRK06483	236	dihydromonapterin reductase; Provisional	99.85
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.85
PRK07454	241	short chain dehydrogenase; Provisional	99.85
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.85
PRK06180	277	short chain dehydrogenase; Provisional	99.85
PLN02780	320	ketoreductase/ oxidoreductase	99.85
PRK06720	169	hypothetical protein; Provisional	99.85
PRK12937	245	short chain dehydrogenase; Provisional	99.85
PRK06523	260	short chain dehydrogenase; Provisional	99.85
PRK05650	270	short chain dehydrogenase; Provisional	99.85
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.85
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.84
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.84
PRK06914	280	short chain dehydrogenase; Provisional	99.84
PRK06701	290	short chain dehydrogenase; Provisional	99.84
PRK06179	270	short chain dehydrogenase; Provisional	99.84
PRK06841	255	short chain dehydrogenase; Provisional	99.84
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.84
PRK07775	274	short chain dehydrogenase; Provisional	99.84
PRK06198	260	short chain dehydrogenase; Provisional	99.84
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.84
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK08703	239	short chain dehydrogenase; Provisional	99.84
PRK07832	272	short chain dehydrogenase; Provisional	99.84
PRK08267	260	short chain dehydrogenase; Provisional	99.83
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.83
PRK06123	248	short chain dehydrogenase; Provisional	99.83
COG1028	251	FabG Dehydrogenases with different specificities (	99.83
PRK07326	237	short chain dehydrogenase; Provisional	99.83
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.83
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.83
PRK12746	254	short chain dehydrogenase; Provisional	99.83
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.83
PRK05993	277	short chain dehydrogenase; Provisional	99.83
PRK06057	255	short chain dehydrogenase; Provisional	99.83
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.82
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.82
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.82
PRK06940	275	short chain dehydrogenase; Provisional	99.82
PRK07904	253	short chain dehydrogenase; Provisional	99.82
PRK09135	249	pteridine reductase; Provisional	99.82
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.82
PRK06482	276	short chain dehydrogenase; Provisional	99.82
PRK05693	274	short chain dehydrogenase; Provisional	99.82
PRK10538	248	malonic semialdehyde reductase; Provisional	99.82
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.82
PRK12828	239	short chain dehydrogenase; Provisional	99.82
PRK07069	251	short chain dehydrogenase; Validated	99.82
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.82
PRK06181	263	short chain dehydrogenase; Provisional	99.82
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK12827	249	short chain dehydrogenase; Provisional	99.81
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.81
PRK07201	657	short chain dehydrogenase; Provisional	99.81
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK12829	264	short chain dehydrogenase; Provisional	99.8
PRK07074	257	short chain dehydrogenase; Provisional	99.8
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.8
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.8
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.8
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.8
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.79
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.79
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.79
PRK07102	243	short chain dehydrogenase; Provisional	99.78
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.78
PRK08324	681	short chain dehydrogenase; Validated	99.78
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.78
PRK12367	245	short chain dehydrogenase; Provisional	99.78
PRK12742	237	oxidoreductase; Provisional	99.78
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.78
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.78
PRK07806	248	short chain dehydrogenase; Provisional	99.77
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.77
PRK06101	240	short chain dehydrogenase; Provisional	99.77
PRK07060	245	short chain dehydrogenase; Provisional	99.77
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.76
PRK06924	251	short chain dehydrogenase; Provisional	99.75
PRK09291	257	short chain dehydrogenase; Provisional	99.75
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.75
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.74
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.74
PRK07041	230	short chain dehydrogenase; Provisional	99.74
PRK08264	238	short chain dehydrogenase; Validated	99.74
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.74
PRK05884	223	short chain dehydrogenase; Provisional	99.74
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.74
PRK08177	225	short chain dehydrogenase; Provisional	99.74
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.74
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.73
PRK07023	243	short chain dehydrogenase; Provisional	99.73
PRK07577	234	short chain dehydrogenase; Provisional	99.73
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.73
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	99.72
PRK06953	222	short chain dehydrogenase; Provisional	99.71
PRK08017	256	oxidoreductase; Provisional	99.7
PRK07578	199	short chain dehydrogenase; Provisional	99.67
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.66
PRK08219	227	short chain dehydrogenase; Provisional	99.66
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.62
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.61
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.6
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.58
PLN03209	576	translocon at the inner envelope of chloroplast su	99.56
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.55
PLN02653	340	GDP-mannose 4,6-dehydratase	99.53
PLN02240	352	UDP-glucose 4-epimerase	99.52
PLN02572	442	UDP-sulfoquinovose synthase	99.52
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.49
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.49
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.46
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.45
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.42
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.41
PLN00198	338	anthocyanidin reductase; Provisional	99.4
PLN02650	351	dihydroflavonol-4-reductase	99.4
PLN02214	342	cinnamoyl-CoA reductase	99.4
PRK08309	177	short chain dehydrogenase; Provisional	99.37
PLN02583	297	cinnamoyl-CoA reductase	99.36
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	99.34
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.33
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.31
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.31
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.3
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.29
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.28
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.27
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.26
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.2
PLN02686	367	cinnamoyl-CoA reductase	99.16
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.14
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.13
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.13
PLN02427	386	UDP-apiose/xylose synthase	99.13
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.13
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	99.1
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.08
PRK12548	289	shikimate 5-dehydrogenase; Provisional	99.08
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.07
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.06
PLN02260	668	probable rhamnose biosynthetic enzyme	99.05
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.0
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	98.99
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	98.99
CHL00194	317	ycf39 Ycf39; Provisional	98.97
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.97
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.94
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	98.94
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.93
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.92
TIGR01746	367	Thioester-redct thioester reductase domain. It has	98.92
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.91
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	98.88
PRK05865	854	hypothetical protein; Provisional	98.87
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.86
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	98.85
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	98.84
PLN02206	442	UDP-glucuronate decarboxylase	98.83
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	98.8
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.8
PLN02778	298	3,5-epimerase/4-reductase	98.79
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.77
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.76
PLN02996	491	fatty acyl-CoA reductase	98.75
PLN02503	605	fatty acyl-CoA reductase 2	98.73
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.72
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	98.68
PRK07201	657	short chain dehydrogenase; Provisional	98.67
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	98.64
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.63
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	98.63
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	98.6
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.59
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.56
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.54
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	98.53
PLN02260	668	probable rhamnose biosynthetic enzyme	98.52
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	98.49
PLN00016	378	RNA-binding protein; Provisional	98.45
PRK12320	699	hypothetical protein; Provisional	98.41
PRK09620	229	hypothetical protein; Provisional	98.38
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.32
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.29
PRK14982	340	acyl-ACP reductase; Provisional	98.28
COG3320	382	Putative dehydrogenase domain of multifunctional n	98.23
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	98.2
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	98.17
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.16
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	98.14
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.13
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.04
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	98.03
COG4982	866	3-oxoacyl-[acyl-carrier protein]	98.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	97.99
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.99
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.97
COG2910	211	Putative NADH-flavin reductase [General function p	97.96
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.95
PRK06849	389	hypothetical protein; Provisional	97.92
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.85
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.84
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.84
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.84
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.83
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.8
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.8
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.79
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.76
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.76
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.76
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.75
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.75
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.75
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	97.74
COG3268	382	Uncharacterized conserved protein [Function unknow	97.72
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.71
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.71
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	97.7
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.7
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.69
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.68
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	97.67
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.67
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.67
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.67
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	97.66
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.65
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.64
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.64
PF08643	299	DUF1776: Fungal family of unknown function (DUF177	97.64
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.63
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.63
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.62
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.6
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.6
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	97.57
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.53
PRK08223	287	hypothetical protein; Validated	97.51
PTZ00325	321	malate dehydrogenase; Provisional	97.5
PLN00106	323	malate dehydrogenase	97.5
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.5
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	97.5
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.48
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	97.48
PRK08328	231	hypothetical protein; Provisional	97.48
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.47
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.45
PRK15116	268	sulfur acceptor protein CsdL; Provisional	97.44
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	97.42
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.42
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.4
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	97.39
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.38
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.38
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.38
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.36
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	97.35
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	97.35
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.32
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.32
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.31
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	97.31
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	97.31
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.28
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	97.28
PRK07411	390	hypothetical protein; Validated	97.27
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.26
PLN00203	519	glutamyl-tRNA reductase	97.26
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.25
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	97.23
KOG2774	366	consensus NAD dependent epimerase [General functio	97.23
PRK12480	330	D-lactate dehydrogenase; Provisional	97.22
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	97.2
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	97.2
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.18
PRK14851	679	hypothetical protein; Provisional	97.17
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.16
PRK09496	453	trkA potassium transporter peripheral membrane com	97.16
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	97.15
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.14
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.12
PRK13243	333	glyoxylate reductase; Reviewed	97.09
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.08
PRK06487	317	glycerate dehydrogenase; Provisional	97.08
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.07
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.06
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.02
COG3007	398	Uncharacterized paraquat-inducible protein B [Func	97.01
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	97.01
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	97.0
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.99
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.99
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.97
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.97
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.96
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.96
PLN02928	347	oxidoreductase family protein	96.95
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	96.95
PLN02740	381	Alcohol dehydrogenase-like	96.93
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	96.93
PRK04148	134	hypothetical protein; Provisional	96.91
PRK14852	989	hypothetical protein; Provisional	96.91
PLN03139	386	formate dehydrogenase; Provisional	96.91
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.9
PRK08655	437	prephenate dehydrogenase; Provisional	96.89
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	96.89
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	96.89
PLN02602	350	lactate dehydrogenase	96.88
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	96.88
PRK09496	453	trkA potassium transporter peripheral membrane com	96.87
PRK05086	312	malate dehydrogenase; Provisional	96.87
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	96.87
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	96.86
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.86
PTZ00354	334	alcohol dehydrogenase; Provisional	96.85
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	96.84
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.84
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	96.83
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	96.82
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.82
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.82
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	96.8
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.8
PRK07574	385	formate dehydrogenase; Provisional	96.8
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.8
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.76
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.76
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.75
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	96.75
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	96.74
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.74
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.73
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.72
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.71
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.71
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.7
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.68
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.68
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	96.67
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.67
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	96.66
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	96.66
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.66
PRK07877	722	hypothetical protein; Provisional	96.64
COG5322	351	Predicted dehydrogenase [General function predicti	96.64
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.61
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.6
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	96.59
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.56
PRK06932	314	glycerate dehydrogenase; Provisional	96.54
PLN02827	378	Alcohol dehydrogenase-like	96.53
PTZ00117	319	malate dehydrogenase; Provisional	96.52
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.51
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.5
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	96.5
PF03808	172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	96.48
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.46
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.46
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	96.45
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.43
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	96.43
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	96.42
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	96.41
PRK06223	307	malate dehydrogenase; Reviewed	96.4
PRK10669	558	putative cation:proton antiport protein; Provision	96.39
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	96.39
PLN02306	386	hydroxypyruvate reductase	96.38
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	96.38
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	96.37
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	96.36
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.36
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	96.35
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	96.35
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	96.35
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.35
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.35
PRK13771	334	putative alcohol dehydrogenase; Provisional	96.35
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.34
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	96.32
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.32
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.32
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	96.3
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	96.28
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.27

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.96  E-value=3.1e-28  Score=167.62  Aligned_cols=114  Identities=28%  Similarity=0.334  Sum_probs=104.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+|+++||||++|||.++|+.|+++|++|++++|..++++++..++..    ..+..+.+|++|.++++++++.+.++
T Consensus         3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~~   78 (246)
T COG4221           3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPEE   78 (246)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999999999999888742    57899999999999999999999999


Q ss_pred             CCCccEEEECcccC--CCCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++||+||||||+.  .+..+.+.++|++++++|+.|.++
T Consensus        79 ~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~  118 (246)
T COG4221          79 FGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLN  118 (246)
T ss_pred             hCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHH
Confidence            99999999999987  355678999999999999998763

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.95  E-value=6.2e-27  Score=164.66  Aligned_cols=116  Identities=32%  Similarity=0.453  Sum_probs=108.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+++++||||++|||+++|+.|+++|++|+++.|++++++++.++++..+ +.++..+++|++++++++++.+++..+
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999999999998876 688999999999999999999999999


Q ss_pred             CCCccEEEECcccC--CCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.||+||||||..  +++.+.++++.+++|++|+.+++
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~  120 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALT  120 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHH
Confidence            89999999999987  46778999999999999998764

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.95  E-value=4e-27  Score=166.74  Aligned_cols=119  Identities=29%  Similarity=0.312  Sum_probs=107.5

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +..+.||+++||||++|||.++|++|++.|++++++.|..++++...+++++..+..+++.++||++|.++++++++++.
T Consensus         7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~   86 (282)
T KOG1205|consen    7 MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI   86 (282)
T ss_pred             HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999988888877754569999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++|++|+||||||+..  .....+.+++..+|++|++|+.
T Consensus        87 ~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V  127 (282)
T KOG1205|consen   87 RHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTV  127 (282)
T ss_pred             HhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhH
Confidence            99999999999999885  2335788899999999999975

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=7.9e-26  Score=163.52  Aligned_cols=122  Identities=54%  Similarity=0.818  Sum_probs=114.0

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ....++++++++|||+++|||+++|+.|+.+|++|++.+|+.++.++...++....+..++.++++|+++.+++.++.++
T Consensus        28 ~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~  107 (314)
T KOG1208|consen   28 THGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEE  107 (314)
T ss_pred             eccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999998866678899999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccccC
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +.+.++++|++|||||++.++...+.|.++..|.+|+.|+|+
T Consensus       108 ~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~fl  149 (314)
T KOG1208|consen  108 FKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFL  149 (314)
T ss_pred             HHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHH
Confidence            999999999999999999888888999999999999999874

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=2.3e-25  Score=157.19  Aligned_cols=118  Identities=22%  Similarity=0.344  Sum_probs=108.8

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +..+.+|+++|||||++|||+++|.+++++|+++++.+.|.+..++..++++..   ++++.+.||+++.+++.+..+++
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~---g~~~~y~cdis~~eei~~~a~~V  108 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI---GEAKAYTCDISDREEIYRLAKKV  108 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc---CceeEEEecCCCHHHHHHHHHHH
Confidence            455789999999999999999999999999999999999999999988888765   38999999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++.|.+|+||||||+..  +..+.+.+++++.|++|+.|+|+
T Consensus       109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~  151 (300)
T KOG1201|consen  109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFW  151 (300)
T ss_pred             HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHH
Confidence            999999999999999984  56789999999999999999873

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.93  E-value=6.5e-25  Score=159.53  Aligned_cols=118  Identities=43%  Similarity=0.606  Sum_probs=106.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++||||++|||+++|+.|+++|++|++++|+.++.++..+++....++.++.++.+|++|.++++++++++.+
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~   89 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA   89 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999998888888887665556789999999999999999999999


Q ss_pred             cCCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|+||||||...+ ..+.+.++|+.+|++|+.|+|
T Consensus        90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~  128 (313)
T PRK05854         90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHF  128 (313)
T ss_pred             hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHH
Confidence            99999999999998754 335788999999999999876

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.92  E-value=3.6e-24  Score=152.52  Aligned_cols=120  Identities=29%  Similarity=0.336  Sum_probs=106.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ++..+.+|+++|||+++|||+++|++|++.|++|++++|+++..++....+.... .+.++..+.||+++.+++++++++
T Consensus         2 ~~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~   81 (270)
T KOG0725|consen    2 SGGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEF   81 (270)
T ss_pred             CCccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999999888777766543 245799999999999999999999


Q ss_pred             HHhc-CCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTAR-ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~-~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ..++ +|+||+||||||...   +..+.++|+|++++++|+.|.+
T Consensus        82 ~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~  126 (270)
T KOG0725|consen   82 AVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSA  126 (270)
T ss_pred             HHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHH
Confidence            9988 799999999999874   4568999999999999999743

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.92  E-value=6e-24  Score=150.72  Aligned_cols=119  Identities=26%  Similarity=0.295  Sum_probs=105.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ..++++|+++||||++|||+++++.|+++|++|++++|+.+++++..+++...+++.++..+.+|++|.+++.++++++.
T Consensus         3 ~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (265)
T PRK07062          3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE   82 (265)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999998888877777766555678899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|++|||||...  +..+.+.++|.+.+++|+.+++
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (265)
T PRK07062         83 ARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVI  123 (265)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999999999763  4457888999999999998865

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=7.7e-24  Score=149.55  Aligned_cols=113  Identities=15%  Similarity=0.131  Sum_probs=95.9

Q ss_pred             CCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..+++|+++||||+  +|||+++|++|+++|++|++++|+. +.++..+++.    ...+.++++|++|+++++++++++
T Consensus         3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~   77 (252)
T PRK06079          3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV----DEEDLLVECDVASDESIERAFATI   77 (252)
T ss_pred             cccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc----cCceeEEeCCCCCHHHHHHHHHHH
Confidence            34789999999999  7999999999999999999999983 4443333332    235788999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||...      +..+.+.++|++.+++|+.+++
T Consensus        78 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~  123 (252)
T PRK06079         78 KERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLI  123 (252)
T ss_pred             HHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHH
Confidence            999999999999999753      3457889999999999999876

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.1e-23  Score=148.47  Aligned_cols=116  Identities=28%  Similarity=0.336  Sum_probs=103.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++|||+++|||.++++.|+++|++|++++|++++.++...++...  +.++.++.+|++++++++++++++.+
T Consensus         2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (254)
T PRK07478          2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--GGEAVALAGDVRDEAYAKALVALAVE   79 (254)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3577899999999999999999999999999999999988888877777654  45788899999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|++|||||...   +..+.+.++|++++++|+.+++
T Consensus        80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~  120 (254)
T PRK07478         80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAF  120 (254)
T ss_pred             hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999753   3457889999999999998876

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.3e-23  Score=149.22  Aligned_cols=116  Identities=23%  Similarity=0.241  Sum_probs=101.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++|||+++|||+++|+.|+++|++|++++|+.+.+++..+++.... +.++.++.+|++|+++++++++++. 
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~-   81 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELK-   81 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHH-
Confidence            35789999999999999999999999999999999999888877777665443 4568899999999999999999985 


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        82 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~  121 (263)
T PRK08339         82 NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAV  121 (263)
T ss_pred             hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            5899999999999763  3457899999999999999876

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.2e-23  Score=148.31  Aligned_cols=116  Identities=27%  Similarity=0.318  Sum_probs=103.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++|||+++|||.+++++|+++|++|++++|+.+..++...++...  +.++..+.+|++++++++++++++.+
T Consensus         5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T PRK05867          5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQVTSMLDQVTA   82 (253)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999988888777777654  45788899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (253)
T PRK05867         83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVF  122 (253)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHH
Confidence            9999999999999763  4456889999999999999876

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.3e-23  Score=153.65  Aligned_cols=116  Identities=25%  Similarity=0.314  Sum_probs=104.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +.+.+|+++|||+++|||++++++|+++|++|++++|+++.+++...++...  +.++.++.+|++|.++++++++++.+
T Consensus         3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~~~~~   80 (330)
T PRK06139          3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL--GAEVLVVPTDVTDADQVKALATQAAS   80 (330)
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999998888877777654  56788899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||||+..  +..+.+.++|++++++|+.|++
T Consensus        81 ~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~  120 (330)
T PRK06139         81 FGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYM  120 (330)
T ss_pred             hcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHH
Confidence            8899999999999863  4567889999999999999875

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.4e-23  Score=149.96  Aligned_cols=115  Identities=21%  Similarity=0.284  Sum_probs=103.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|+++|||+++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.+++.++++++.++
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~   80 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRL   80 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999988888777777544  457888999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        81 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  119 (275)
T PRK05876         81 LGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSI  119 (275)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHH
Confidence            999999999999863  4557899999999999999875

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=1.2e-23  Score=149.09  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=97.7

Q ss_pred             hccCCCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           16 VTQGIDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        16 ~~~~~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      |.+.+++++|+++||||+  +|||+++|++|+++|++|++++|+.+..+ ...++....  ..+.++++|++|+++++++
T Consensus         2 ~~~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~-~~~~~~~~~--~~~~~~~~D~~~~~~v~~~   78 (258)
T PRK07533          2 MQPLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARP-YVEPLAEEL--DAPIFLPLDVREPGQLEAV   78 (258)
T ss_pred             CCcccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHH-HHHHHHHhh--ccceEEecCcCCHHHHHHH
Confidence            456667899999999998  59999999999999999999999864322 223333222  2346789999999999999


Q ss_pred             HHHHHhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhccccccC
Q 042455           94 ASDFTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++++.++++++|++|||||...      +..+.+.++|+++|++|+.|+++
T Consensus        79 ~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~  129 (258)
T PRK07533         79 FARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIR  129 (258)
T ss_pred             HHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHH
Confidence            9999999999999999999753      23467899999999999998763

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.3e-23  Score=147.41  Aligned_cols=117  Identities=32%  Similarity=0.440  Sum_probs=103.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|+++|||+++|||+++++.|+++|++|++++|+++..++...++.....+.++.++++|+++++++.++++++.++
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999998888887777765333567889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||...  +..+.+.++|++++++|+.+++
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAW  122 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHH
Confidence            999999999999753  4456788999999999999876

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=2.5e-23  Score=148.77  Aligned_cols=115  Identities=13%  Similarity=0.169  Sum_probs=94.7

Q ss_pred             CCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .|.+|+++||||+  +|||+++|+.|+++|++|++++|+.+ .++..+++.... +.. ..+++|++|.++++++++++.
T Consensus         2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~-~~~-~~~~~Dv~d~~~v~~~~~~i~   78 (274)
T PRK08415          2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQEL-GSD-YVYELDVSKPEHFKSLAESLK   78 (274)
T ss_pred             ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhc-CCc-eEEEecCCCHHHHHHHHHHHH
Confidence            4679999999997  79999999999999999999999853 222333333322 223 578999999999999999999


Q ss_pred             hcCCCccEEEECcccCC------CCCccCHHHHHHHhhhccccccC
Q 042455           99 ARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++|++|+||||||+..      +..+.+.++|+++|++|+.|+++
T Consensus        79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~  124 (274)
T PRK08415         79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIE  124 (274)
T ss_pred             HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHH
Confidence            99999999999999752      34578899999999999999863

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.91  E-value=3.1e-23  Score=146.36  Aligned_cols=114  Identities=22%  Similarity=0.297  Sum_probs=97.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||+++|++|+++|++|++++|+..  ++....+...  +.++.++.+|++++++++++++++.+
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (251)
T PRK12481          4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVE   79 (251)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999988643  2333334333  46788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||||...  +..+.+.++|++++++|+.+++
T Consensus        80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~  119 (251)
T PRK12481         80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVF  119 (251)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHH
Confidence            9999999999999863  3457889999999999999876

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.91  E-value=1.6e-23  Score=151.59  Aligned_cols=119  Identities=45%  Similarity=0.651  Sum_probs=104.7

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +.++++|+++||||++|||+++|++|+++|++|++++|+.++.++...++....++.++.++.+|++|.++++++++++.
T Consensus        11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~   90 (306)
T PRK06197         11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR   90 (306)
T ss_pred             cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999988877776666654445678899999999999999999999


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||...+....+.++|+..|++|+.|++
T Consensus        91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~  129 (306)
T PRK06197         91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHF  129 (306)
T ss_pred             hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHH
Confidence            999999999999998765556777889999999999865

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.1e-23  Score=150.33  Aligned_cols=116  Identities=18%  Similarity=0.156  Sum_probs=98.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc----------chhHHHHHHHHhcCCCCeeEEEEecCCCHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM----------AAGRDVKVAIVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~----------~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      .++++|+++||||++|||+++|+.|+++|++|++++|+.          +..++..+.+...  +.++.++++|++++++
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~   81 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA--GGRGIAVQVDHLVPEQ   81 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            457899999999999999999999999999999999974          3445555555443  4567889999999999


Q ss_pred             HHHHHHHHHhcCCCccEEEECc-ccC------CCCCccCHHHHHHHhhhcccccc
Q 042455           90 VRKFASDFTARALPLNILINKA-GIC------GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~a-g~~------~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++++.+++|+||+||||| |..      .+..+.+.++|.+++++|+.++|
T Consensus        82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  136 (305)
T PRK08303         82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHL  136 (305)
T ss_pred             HHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999 752      23446788999999999998876

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.8e-23  Score=148.52  Aligned_cols=115  Identities=24%  Similarity=0.305  Sum_probs=100.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc---------chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM---------AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVR   91 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~---------~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~   91 (138)
                      .+++|+++||||++|||+++|+.|+++|++|++++++.         +.+++..+++...  +.++.++.+|++|++++.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~   80 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--GGEAVANGDDIADWDGAA   80 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc--CCceEEEeCCCCCHHHHH
Confidence            36799999999999999999999999999999998875         5566666666544  457888999999999999


Q ss_pred             HHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           92 KFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        92 ~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++.++++++|++|||||+..  +..+.+.++|++++++|+.|+|
T Consensus        81 ~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~  128 (286)
T PRK07791         81 NLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHF  128 (286)
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHH
Confidence            999999999999999999999864  3457899999999999999876

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=3.2e-23  Score=147.93  Aligned_cols=115  Identities=14%  Similarity=0.169  Sum_probs=94.7

Q ss_pred             CCCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..|++|++||||+++  |||+++|+.|+++|++|++++|+....+. .+++.... +. ..++++|++|.++++++++++
T Consensus         3 ~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~~-g~-~~~~~~Dv~d~~~v~~~~~~~   79 (271)
T PRK06505          3 GLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAESL-GS-DFVLPCDVEDIASVDAVFEAL   79 (271)
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHhc-CC-ceEEeCCCCCHHHHHHHHHHH
Confidence            347899999999996  99999999999999999999987543333 33333222 22 357899999999999999999


Q ss_pred             HhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+++|++|+||||||+..      +..+.+.++|++++++|+.+++
T Consensus        80 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~  125 (271)
T PRK06505         80 EKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFT  125 (271)
T ss_pred             HHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHH
Confidence            999999999999999763      3346889999999999999876

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.90  E-value=4.3e-23  Score=146.24  Aligned_cols=117  Identities=14%  Similarity=0.091  Sum_probs=97.0

Q ss_pred             CCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        20 ~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      +++++|+++|||++  +|||+++|++|+++|++|++++++.+  +.++..+++...  ..++.++++|++|+++++++++
T Consensus         2 ~~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~   79 (258)
T PRK07370          2 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP--LNPSLFLPCDVQDDAQIEETFE   79 (258)
T ss_pred             cccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc--cCcceEeecCcCCHHHHHHHHH
Confidence            35789999999986  89999999999999999998877644  334445555443  2346788999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhccccccC
Q 042455           96 DFTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++.++++++|+||||||+..      +..+.+.++|+++|++|+.|+++
T Consensus        80 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~  128 (258)
T PRK07370         80 TIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAP  128 (258)
T ss_pred             HHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHH
Confidence            99999999999999999752      34577899999999999998763

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.90  E-value=6e-23  Score=144.78  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=103.6

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++.+|++|||||+++||++++++|+++|++|++++|+.++.++...++...  +.++..+.+|++|+++++++++++.
T Consensus         4 ~~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   81 (254)
T PRK08085          4 LFSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQEVEAAIEHIE   81 (254)
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999988877777777544  4567889999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        82 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (254)
T PRK08085         82 KDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVF  122 (254)
T ss_pred             HhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999999999763  4557889999999999999875

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.90  E-value=8.7e-23  Score=142.35  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=101.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++|||+++|||++++++|+++|++|++++|+.+.+++..+++...  +.++..+.+|++++++++++++++.++
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESIRHLFDAIEQQ   79 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999998888877777654  456788899999999999999999999


Q ss_pred             CC-CccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          101 AL-PLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~-~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++ +||++|||+|...   +..+.+.++|.+.+++|+.++|
T Consensus        80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
T PRK08862         80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLF  120 (227)
T ss_pred             hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHH
Confidence            98 9999999998542   3456788999999999988765

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.90  E-value=7e-23  Score=150.11  Aligned_cols=116  Identities=20%  Similarity=0.266  Sum_probs=104.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ..+++|+++||||++|||+++++.|+++|++|++++|+++.+++...++...  +.++.++.+|++|.++++++++++.+
T Consensus         4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~--g~~~~~v~~Dv~d~~~v~~~~~~~~~   81 (334)
T PRK07109          4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA--GGEALAVVADVADAEAVQAAADRAEE   81 (334)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3477899999999999999999999999999999999988888877777654  56788999999999999999999999


Q ss_pred             cCCCccEEEECcccC--CCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|++|||+|..  ++..+.+.++|++++++|+.|++
T Consensus        82 ~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  121 (334)
T PRK07109         82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVV  121 (334)
T ss_pred             HCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999975  34567899999999999998875

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=4.3e-23  Score=146.06  Aligned_cols=113  Identities=15%  Similarity=0.185  Sum_probs=94.5

Q ss_pred             CCCCCCEEEEeCC--CCchHHHHHHHHHHCCCEEEEEecCc--chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNM--AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        20 ~~~~~k~~litG~--~~~iG~~~a~~l~~~g~~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      ..+++|+++|||+  ++|||+++|+.|+++|++|++++|+.  +..++...++     +.++.++++|++|+++++++++
T Consensus         3 ~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~   77 (256)
T PRK07889          3 GLLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL-----PEPAPVLELDVTNEEHLASLAD   77 (256)
T ss_pred             ccccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc-----CCCCcEEeCCCCCHHHHHHHHH
Confidence            3478999999999  89999999999999999999999864  2233333322     2357789999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.++++++|++|||||+..      +..+.+.++|++++++|+.++|
T Consensus        78 ~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~  125 (256)
T PRK07889         78 RVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLK  125 (256)
T ss_pred             HHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999999863      2346788999999999999876

>PRK08589 short chain dehydrogenase; Validated

Probab=99.90  E-value=1e-22  Score=145.26  Aligned_cols=114  Identities=26%  Similarity=0.358  Sum_probs=100.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|++||||+++|||+++|+.|+++|++|++++|+ +..++...++...  +.++..+.+|+++.++++++++++.++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQVKDFASEIKEQ   79 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999 6677766666543  457889999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..   +..+.+.+.|++++++|+.|++
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  119 (272)
T PRK08589         80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTF  119 (272)
T ss_pred             cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999999863   3346788999999999999875

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.90  E-value=7.1e-23  Score=147.73  Aligned_cols=117  Identities=26%  Similarity=0.353  Sum_probs=102.2

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++.++++|+++|||+++|||+++++.|+++|++|++++|+.+.+++...++..   +.++..+.+|++|.++++++++++
T Consensus         3 ~~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~   79 (296)
T PRK05872          3 PMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEA   79 (296)
T ss_pred             CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999998887776665531   356777889999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|++|||||+..  +..+.+.++|++++++|+.|++
T Consensus        80 ~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~  121 (296)
T PRK05872         80 VERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVF  121 (296)
T ss_pred             HHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999999999863  4557899999999999999876

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=7.2e-23  Score=145.05  Aligned_cols=117  Identities=11%  Similarity=0.069  Sum_probs=95.2

Q ss_pred             CCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +++++|+++||||+  +|||+++|++|+++|++|++++|+.... +..+++.....+.++.++++|++|+++++++++++
T Consensus         3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~   81 (257)
T PRK08594          3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLE-KEVRELADTLEGQESLLLPCDVTSDEEITACFETI   81 (257)
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccch-HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHH
Confidence            46789999999997  8999999999999999999998764221 12222322222456888999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+++|++|++|||||+..      +..+.+.++|.+.+++|+.+++
T Consensus        82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  127 (257)
T PRK08594         82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLT  127 (257)
T ss_pred             HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHH
Confidence            999999999999999753      3346889999999999998865

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=7.9e-23  Score=145.31  Aligned_cols=113  Identities=12%  Similarity=0.154  Sum_probs=94.7

Q ss_pred             CCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++|+++||||++  |||+++|+.|+++|++|++++|+ .+.++..+++....  ..+.++.+|++|+++++++++++.+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   80 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK   80 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh
Confidence            6799999999986  99999999999999999999987 34444455555442  3456789999999999999999999


Q ss_pred             cCCCccEEEECcccCCC-------CCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT-------PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~-------~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++|++|||||+...       ..+.+.++|++++++|+.|++
T Consensus        81 ~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  125 (262)
T PRK07984         81 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFV  125 (262)
T ss_pred             hcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHH
Confidence            99999999999997531       235788999999999999875

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2e-22  Score=142.30  Aligned_cols=116  Identities=26%  Similarity=0.301  Sum_probs=100.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +++++|+++|||+++|||.++|++|+++|++|++++|+.+ ..++..+++...  +.++..+.+|++|+++++++++++.
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~   81 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKADLRAAVARTE   81 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999764 345556666544  4568889999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|++|||+|...  +..+.+.++|++++++|+.++|
T Consensus        82 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (254)
T PRK06114         82 AELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVF  122 (254)
T ss_pred             HHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhH
Confidence            99999999999999864  3456889999999999999986

>PRK09242 tropinone reductase; Provisional

Probab=99.89  E-value=1.7e-22  Score=142.69  Aligned_cols=120  Identities=27%  Similarity=0.292  Sum_probs=106.9

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +++.+++|+++|||++++||.+++++|+++|++|++++|+.+..++...++....++.++.++.+|++++++++++++++
T Consensus         3 ~~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   82 (257)
T PRK09242          3 HRWRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV   82 (257)
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999998888887777776655678999999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        83 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  124 (257)
T PRK09242         83 EDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAF  124 (257)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHH
Confidence            999999999999999753  4457889999999999999875

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.7e-22  Score=143.29  Aligned_cols=112  Identities=25%  Similarity=0.318  Sum_probs=98.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++|||+++|||++++++|+++|++|++++|+.+..++...++     +.++.++++|++++++++++++++.+.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVAR   77 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999987766655544     456888999999999999999999999


Q ss_pred             CCCccEEEECcccCC-CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG-TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||... ...+.+.++|++.+++|+.+++
T Consensus        78 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~  115 (261)
T PRK08265         78 FGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAA  115 (261)
T ss_pred             hCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHH
Confidence            999999999999763 2346788999999999999876

>PRK06196 oxidoreductase; Provisional

Probab=99.89  E-value=1.5e-22  Score=147.19  Aligned_cols=120  Identities=49%  Similarity=0.665  Sum_probs=102.1

Q ss_pred             chhhhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHH
Q 042455           12 TAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVR   91 (138)
Q Consensus        12 ~~~~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~   91 (138)
                      .+..+....++.+|+++||||++|||+++|+.|+++|++|++++|+.++.++...++.      .+.++++|++|.++++
T Consensus        14 ~~~~~~~~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~   87 (315)
T PRK06196         14 TAEEVLAGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVR   87 (315)
T ss_pred             cHHHHhcCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHH
Confidence            3444444556789999999999999999999999999999999999877766655542      2678899999999999


Q ss_pred             HHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           92 KFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        92 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++.+.++++|+||||||...+....+.++|+..+++|+.|++
T Consensus        88 ~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~  133 (315)
T PRK06196         88 AFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHF  133 (315)
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHH
Confidence            9999999989999999999998755556677889999999999875

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=1.9e-22  Score=143.05  Aligned_cols=114  Identities=12%  Similarity=0.134  Sum_probs=94.8

Q ss_pred             CCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++|+++||||++  |||+++|+.|+++|++|++++|+. ..++..+++.... +. ..++++|++|+++++++++++.
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~-g~-~~~~~~Dv~~~~~v~~~~~~~~   81 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEI-GC-NFVSELDVTNPKSISNLFDDIK   81 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhc-CC-ceEEEccCCCHHHHHHHHHHHH
Confidence            46799999999997  999999999999999999999874 3344445554432 22 2467899999999999999999


Q ss_pred             hcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|+||||+|...      +..+.+.++|++++++|+.+++
T Consensus        82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~  126 (260)
T PRK06603         82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLL  126 (260)
T ss_pred             HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHH
Confidence            99999999999999753      3457899999999999999876

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.89  E-value=2.2e-22  Score=141.95  Aligned_cols=117  Identities=29%  Similarity=0.348  Sum_probs=103.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++++|+++|||++++||++++++|+++|++|++++|++++.++....+...  +.++.++++|++|.++++++++++.
T Consensus         5 ~~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   82 (255)
T PRK07523          5 LFDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFE   82 (255)
T ss_pred             ccCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999988877776666544  4578899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        83 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (255)
T PRK07523         83 AEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVF  123 (255)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999999999863  4456789999999999998875

>PLN02253 xanthoxin dehydrogenase

Probab=99.89  E-value=2.9e-22  Score=143.20  Aligned_cols=118  Identities=24%  Similarity=0.321  Sum_probs=101.3

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+...+++|+++||||+++||.+++++|+++|++|++++|+.+..++...++.   .+.++.++++|++|.+++++++++
T Consensus        11 ~~~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~   87 (280)
T PLN02253         11 LPSQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDF   87 (280)
T ss_pred             ccccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHH
Confidence            34456889999999999999999999999999999999998776666555542   135688999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||...    +..+.+.++|++++++|+.|++
T Consensus        88 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  132 (280)
T PLN02253         88 TVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVF  132 (280)
T ss_pred             HHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHH
Confidence            9999999999999999763    2346789999999999999875

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.89  E-value=1.1e-22  Score=135.77  Aligned_cols=115  Identities=25%  Similarity=0.307  Sum_probs=101.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++.|.++|||+++|||+++++.|+++|++|++.+++...+++....|...   .....+.||+++.++++..+++..+.
T Consensus        11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~---~~h~aF~~DVS~a~~v~~~l~e~~k~   87 (256)
T KOG1200|consen   11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY---GDHSAFSCDVSKAHDVQNTLEEMEKS   87 (256)
T ss_pred             HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC---CccceeeeccCcHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999999999988877777666321   45678899999999999999999999


Q ss_pred             CCCccEEEECcccCCCC--CccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICGTP--FMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~--~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|++++||||||+..+.  ..++.++|++++.+|+.|.|+
T Consensus        88 ~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl  127 (256)
T KOG1200|consen   88 LGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFL  127 (256)
T ss_pred             cCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHH
Confidence            99999999999998753  367999999999999999874

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.89  E-value=9.4e-23  Score=135.35  Aligned_cols=111  Identities=38%  Similarity=0.547  Sum_probs=98.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC--cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-HVIMADRN--MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |+++||||++|||++++++|+++|. .|++++|+  .+..++...++...  +.++.++++|++++++++++++++.+++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            7899999999999999999999966 78889998  56677777777755  5889999999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||+|...  +..+.+.++|+++|++|+.+++
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPF  116 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHH
T ss_pred             ccccccccccccccccccccccchhhhhccccccceee
Confidence            99999999999875  3446788999999999998875

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06194 hypothetical protein; Provisional

Probab=99.89  E-value=3.6e-22  Score=143.07  Aligned_cols=115  Identities=29%  Similarity=0.335  Sum_probs=101.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.++++++++.+.+.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~   80 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALER   80 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999888777776666543  457888999999999999999999999


Q ss_pred             CCCccEEEECcccCCC--CCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGT--PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||....  ..+.+.++|++.+++|+.|++
T Consensus        81 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  119 (287)
T PRK06194         81 FGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVI  119 (287)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHH
Confidence            9999999999998743  446788999999999999875

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=2.4e-22  Score=143.46  Aligned_cols=115  Identities=12%  Similarity=0.109  Sum_probs=93.9

Q ss_pred             CCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..|.+|+++|||++  +|||+++|+.|+++|++|++++|++. ..+..+++.... + ....+++|++|+++++++++++
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~-~-~~~~~~~Dl~~~~~v~~~~~~~   82 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAEL-G-AFVAGHCDVTDEASIDAVFETL   82 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhc-C-CceEEecCCCCHHHHHHHHHHH
Confidence            34678999999997  89999999999999999999988632 223333343332 2 2456899999999999999999


Q ss_pred             HhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..      +..+.+.++|+++|++|+.+++
T Consensus        83 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~  128 (272)
T PRK08159         83 EKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFT  128 (272)
T ss_pred             HHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHH
Confidence            999999999999999753      3446889999999999999876

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.89  E-value=2.4e-22  Score=142.31  Aligned_cols=118  Identities=14%  Similarity=0.237  Sum_probs=98.7

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.++++|+++||||++|||+++++.|+++|++|++++| +.+.++....++.... +.++.++++|++|+++++++++++
T Consensus         3 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~   81 (260)
T PRK08416          3 SNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKKI   81 (260)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHH
Confidence            34688999999999999999999999999999998875 4555566555554432 457889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--------CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|++|||||..+        +..+.+.++|.+.+++|+.+++
T Consensus        82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  129 (260)
T PRK08416         82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFV  129 (260)
T ss_pred             HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHH
Confidence            999999999999998642        3346788999999999988765

>PRK05717 oxidoreductase; Validated

Probab=99.89  E-value=2.6e-22  Score=141.66  Aligned_cols=116  Identities=26%  Similarity=0.290  Sum_probs=100.0

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      -|.+.+++|+++|||++++||.++|+.|+++|++|++++|+.++.++...++     +.++.++++|+++.+++.+++++
T Consensus         3 ~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~   77 (255)
T PRK05717          3 EPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAE   77 (255)
T ss_pred             CCCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHH
Confidence            4667788999999999999999999999999999999999876655544333     35678899999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|++|||||...    +..+.+.++|++.+++|+.+++
T Consensus        78 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (255)
T PRK05717         78 VLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPM  122 (255)
T ss_pred             HHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999863    2335788999999999999876

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=2.4e-22  Score=142.58  Aligned_cols=114  Identities=11%  Similarity=0.066  Sum_probs=93.1

Q ss_pred             CCCCCEEEEeCC--CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~--~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++|+++||||  ++|||+++|+.|+++|++|++++|+. +.++..+++....  .....+++|++|+++++++++++.
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   79 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAEL--DSELVFRCDVASDDEINQVFADLG   79 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhcc--CCceEEECCCCCHHHHHHHHHHHH
Confidence            377999999997  67999999999999999999988763 3334444454332  234578999999999999999999


Q ss_pred             hcCCCccEEEECcccCCC------C-CccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGT------P-FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~------~-~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|++|||||+...      . .+.+.++|++++++|+.+++
T Consensus        80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~  125 (261)
T PRK08690         80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLP  125 (261)
T ss_pred             HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHH
Confidence            999999999999998642      1 24678899999999998875

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.89  E-value=2.9e-22  Score=145.97  Aligned_cols=116  Identities=39%  Similarity=0.552  Sum_probs=100.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++.+|+++||||++|||.++++.|+++|++|++++|+.+++++...++...  +.++.++.+|+++.++++++++++.+
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~   79 (322)
T PRK07453          2 SQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRA   79 (322)
T ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999988887777666432  45688899999999999999999887


Q ss_pred             cCCCccEEEECcccCCC---CCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT---PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|+||||||+..+   ..+.+.++|+.++++|+.|++
T Consensus        80 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  120 (322)
T PRK07453         80 LGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHF  120 (322)
T ss_pred             hCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHH
Confidence            77899999999998643   235688999999999999876

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.89  E-value=1.4e-22  Score=138.02  Aligned_cols=112  Identities=27%  Similarity=0.414  Sum_probs=98.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++||++++||+.+|||++++++|+++|..+.++..+.|. .+...+|++.+|..++.+++||+++..++++.++++..
T Consensus         1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En-~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~   79 (261)
T KOG4169|consen    1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN-PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILA   79 (261)
T ss_pred             CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC-HHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHH
Confidence            46789999999999999999999999999876666555444 45577888899999999999999999999999999999


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      .+|.||++||+||+      .+..+|++.+.+|+.|.++
T Consensus        80 ~fg~iDIlINgAGi------~~dkd~e~Ti~vNLtgvin  112 (261)
T KOG4169|consen   80 TFGTIDILINGAGI------LDDKDWERTINVNLTGVIN  112 (261)
T ss_pred             HhCceEEEEccccc------ccchhHHHhhccchhhhhh
Confidence            99999999999998      3467799999999998653

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.89  E-value=4.4e-22  Score=143.51  Aligned_cols=118  Identities=28%  Similarity=0.311  Sum_probs=101.0

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +..++.+|+++||||++|||+++|+.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|.+++.++++++
T Consensus        34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~  111 (293)
T PRK05866         34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--GGDAMAVPCDLSDLDAVDALVADV  111 (293)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999988888777776544  456888999999999999999999


Q ss_pred             HhcCCCccEEEECcccCCC--CCc--cCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGT--PFM--LSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~--~~~--~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|++|||||....  ..+  .+.++++..+++|+.|++
T Consensus       112 ~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  155 (293)
T PRK05866        112 EKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPL  155 (293)
T ss_pred             HHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHH
Confidence            9999999999999998642  222  246788999999998865

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.89  E-value=5e-22  Score=141.83  Aligned_cols=118  Identities=25%  Similarity=0.329  Sum_probs=102.7

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..+++.+|+++|||++++||+++++.|+++|++|++++|+.+..++...++...  +.++.++++|+++++++.++++++
T Consensus         4 ~~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~   81 (278)
T PRK08277          4 NLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA--GGEALAVKADVLDKESLEQARQQI   81 (278)
T ss_pred             ceeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHH
Confidence            344688999999999999999999999999999999999988777777776543  457889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCCC-----------------CCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGT-----------------PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~-----------------~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|++|||||...+                 ..+.+.++|++.+++|+.+++
T Consensus        82 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  138 (278)
T PRK08277         82 LEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTL  138 (278)
T ss_pred             HHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHH
Confidence            9999999999999996421                 335778999999999999875

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.88  E-value=8e-22  Score=139.98  Aligned_cols=118  Identities=21%  Similarity=0.255  Sum_probs=104.3

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..+++++|+++|||++++||.+++++|+++|++|++++|+.++.++....+...  +.++.++++|+++.++++++++++
T Consensus         4 ~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   81 (265)
T PRK07097          4 NLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQI   81 (265)
T ss_pred             cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999988887777776544  457889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|++|||+|...  +..+.+.++|++++++|+.|++
T Consensus        82 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (265)
T PRK07097         82 EKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPF  123 (265)
T ss_pred             HHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHH
Confidence            999999999999999864  4457889999999999998875

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=6.3e-22  Score=143.47  Aligned_cols=117  Identities=28%  Similarity=0.352  Sum_probs=100.9

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +..++++|+++|||+++|||+++|++|+++|++|++++++. +..++...++...  +.++.++.+|++|.+++++++++
T Consensus         6 ~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~   83 (306)
T PRK07792          6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVAT   83 (306)
T ss_pred             CCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH
Confidence            44568899999999999999999999999999999998754 4455666666554  56788999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCCC--CCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGT--PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+ ++++|+||||||+..+  ..+.+.++|++++++|+.|++
T Consensus        84 ~~~-~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~  125 (306)
T PRK07792         84 AVG-LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHF  125 (306)
T ss_pred             HHH-hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHH
Confidence            988 9999999999998743  446788999999999999876

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.88  E-value=6.4e-22  Score=139.66  Aligned_cols=116  Identities=18%  Similarity=0.258  Sum_probs=98.1

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.+++++|+++|||+++|||++++++|+++|++|++++++..  ++..+++...  +.++..+++|++|.++++++++++
T Consensus         4 ~~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   79 (253)
T PRK08993          4 DAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL--GRRFLSLTADLRKIDGIPALLERA   79 (253)
T ss_pred             cccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHH
Confidence            344688999999999999999999999999999998877542  3334444433  456888999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|++|||||...  +..+.+.++|++++++|+.+++
T Consensus        80 ~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  121 (253)
T PRK08993         80 VAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVF  121 (253)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHH
Confidence            999999999999999763  3457889999999999999876

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.88  E-value=7.1e-22  Score=139.17  Aligned_cols=116  Identities=26%  Similarity=0.320  Sum_probs=102.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++|||++++||.+++++|+++|++|++++|+.+..++....+...  +.++..+.+|+++.+++.++++++.+
T Consensus         3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~   80 (253)
T PRK06172          3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA--GGEALFVACDVTRDAEVKALVEQTIA   80 (253)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999988877777666554  46788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|...   +..+.+.++|++++++|+.+++
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  121 (253)
T PRK06172         81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVW  121 (253)
T ss_pred             HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999999999753   2446789999999999998874

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.88  E-value=8.8e-22  Score=140.50  Aligned_cols=116  Identities=20%  Similarity=0.205  Sum_probs=98.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-------hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-------GRDVKVAIVMQNPAAKVDVMELDLSSLASVRK   92 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~   92 (138)
                      +++.+|+++||||++|||.++|+.|+++|++|++++|+.+.       .++...++...  +.++.++.+|+++++++.+
T Consensus         2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~   79 (273)
T PRK08278          2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA--GGQALPLVGDVRDEDQVAA   79 (273)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHH
Confidence            34778999999999999999999999999999999997653       33334444433  4578899999999999999


Q ss_pred             HHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           93 FASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        93 ~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++.+.++++|++|||||...  +..+.+.++|++++++|+.|++
T Consensus        80 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~  126 (273)
T PRK08278         80 AVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTF  126 (273)
T ss_pred             HHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHH
Confidence            99999999999999999999753  4456788999999999999876

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.88  E-value=2.2e-22  Score=135.18  Aligned_cols=112  Identities=28%  Similarity=0.321  Sum_probs=98.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |.++|-++|||||++|||+++|++|.+.|-.|++++|+++++++..+..      ..+....||+.|.++.+.+++.+++
T Consensus         1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~------p~~~t~v~Dv~d~~~~~~lvewLkk   74 (245)
T COG3967           1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAEN------PEIHTEVCDVADRDSRRELVEWLKK   74 (245)
T ss_pred             CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcC------cchheeeecccchhhHHHHHHHHHh
Confidence            3578999999999999999999999999999999999999988877653      4577889999999999999999999


Q ss_pred             cCCCccEEEECcccCCCC----CccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTP----FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~----~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+.++++|||||+.++.    .+.+.+..++-+++|+.++.
T Consensus        75 ~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API  116 (245)
T COG3967          75 EYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPI  116 (245)
T ss_pred             hCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHH
Confidence            999999999999998632    24466777889999998875

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.88  E-value=7.8e-22  Score=140.12  Aligned_cols=118  Identities=19%  Similarity=0.232  Sum_probs=101.7

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .++++++|+++|||++++||.+++++|+++|++|++++|+.+..+....++...  +.++.++.+|++++++++++++++
T Consensus         3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~   80 (264)
T PRK07576          3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYAAVEAAFAQI   80 (264)
T ss_pred             ccccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999987776666566544  346788999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ...++++|++|||+|...  +..+.+.++|++.+++|+.|++
T Consensus        81 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  122 (264)
T PRK07576         81 ADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTF  122 (264)
T ss_pred             HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH
Confidence            988999999999998653  3456788999999999999875

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.1e-21  Score=138.23  Aligned_cols=116  Identities=28%  Similarity=0.433  Sum_probs=102.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++|||++++||.+++++|+++|++|++++|+.+..++..+++...  +.++.++++|+++.++++++++++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQIDALFAHIRE   81 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999988877777777554  45678899999999999999999999


Q ss_pred             cCCCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|..   .+..+.+.++|++.+++|+.+++
T Consensus        82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (252)
T PRK07035         82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYF  122 (252)
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999964   24456788999999999999875

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.88  E-value=1.1e-21  Score=138.69  Aligned_cols=117  Identities=21%  Similarity=0.304  Sum_probs=99.9

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.+++++|++|||||+++||.++++.|+++|++|++++|+ +..++..+.+...  +.++.++.+|+++.++++++++++
T Consensus         9 ~~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~   85 (258)
T PRK06935          9 DFFSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEA   85 (258)
T ss_pred             ccccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence            4456889999999999999999999999999999999998 4555555444433  456889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        86 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  127 (258)
T PRK06935         86 LEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVY  127 (258)
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHH
Confidence            999999999999999763  3456788999999999999865

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.88  E-value=8.1e-22  Score=143.37  Aligned_cols=113  Identities=38%  Similarity=0.548  Sum_probs=98.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+|+++|||+++|||+++|+.|+++| ++|++++|+.++.++...++...  +.++.++.+|+++.++++++++++.+.+
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRESG   79 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            37899999999999999999999999 99999999988877766666422  4567889999999999999999998888


Q ss_pred             CCccEEEECcccCCC---CCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGT---PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||||+..+   ....+.++|++++++|+.|++
T Consensus        80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~  118 (314)
T TIGR01289        80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHF  118 (314)
T ss_pred             CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHH
Confidence            999999999998643   235688999999999999876

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.88  E-value=8.6e-22  Score=139.59  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=95.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|+++||||++|||++++++|+++|++|++++|+++.+++...++     +.++.++++|+++.++++++++++.+.
T Consensus         3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (263)
T PRK06200          3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDA   77 (263)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999999987766655443     345788999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHH----HHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDN----IELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~----~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||+..   +..+.+.++    |++++++|+.+++
T Consensus        78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  121 (263)
T PRK06200         78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYL  121 (263)
T ss_pred             cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHH
Confidence            999999999999753   333555554    8999999999875

>PRK06128 oxidoreductase; Provisional

Probab=99.88  E-value=2e-21  Score=140.43  Aligned_cols=115  Identities=25%  Similarity=0.290  Sum_probs=97.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++|++|||||++|||+++++.|+++|++|++++++.+  ..++....+...  +.++.++.+|+++.++++++++++.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~  129 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEAFCRQLVERAV  129 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999999887643  234444444443  5678899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|+||||||...   +..+.+.++|++++++|+.|++
T Consensus       130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  171 (300)
T PRK06128        130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMF  171 (300)
T ss_pred             HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999999999752   3457899999999999999876

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.88  E-value=5.1e-22  Score=143.63  Aligned_cols=119  Identities=17%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             CCCCCCCEEEEeCC--CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhc--------CCC---CeeEEEEecC-
Q 042455           19 GIDAAGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQ--------NPA---AKVDVMELDL-   84 (138)
Q Consensus        19 ~~~~~~k~~litG~--~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~--------~~~---~~~~~~~~D~-   84 (138)
                      .++++||++||||+  ++|||+++|+.|+++|++|++ +|+.++++.....+...        ..+   .....+.+|+ 
T Consensus         4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   82 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV   82 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence            34589999999999  799999999999999999988 78877777666555421        101   1146788898 


Q ss_pred             -CC------------------HHHHHHHHHHHHhcCCCccEEEECcccC----CCCCccCHHHHHHHhhhccccccC
Q 042455           85 -SS------------------LASVRKFASDFTARALPLNILINKAGIC----GTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        85 -~~------------------~~~~~~~~~~~~~~~~~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                       ++                  .++++++++++.+++|++|+||||||..    .+..+.+.++|+++|++|+.++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~  159 (303)
T PLN02730         83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVS  159 (303)
T ss_pred             cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence             33                  4489999999999999999999999753    345678999999999999999863

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.3e-21  Score=137.89  Aligned_cols=113  Identities=23%  Similarity=0.294  Sum_probs=99.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||+++|||.++++.|+++|++|++++|+.+..++...++...  +.++.++++|++|+++++++++++.+.+++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQKMVEQIDEKFGR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999987777766666543  357889999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|++|||+|...  +..+.+.++|++++++|+.|+++
T Consensus        79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~  115 (252)
T PRK07677         79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFY  115 (252)
T ss_pred             ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHH
Confidence            999999999652  44578999999999999998763

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.5e-21  Score=137.65  Aligned_cols=115  Identities=17%  Similarity=0.146  Sum_probs=101.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|+++||||+++||++++++|+++|++|++++|+++..++...++...  +.++.++.+|+++.++++++++++.++
T Consensus         2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (258)
T PRK07890          2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQCANLVALALER   79 (258)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999988777766666543  456889999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||...   +..+.+.++|++.+++|+.|++
T Consensus        80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  119 (258)
T PRK07890         80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTL  119 (258)
T ss_pred             cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHH
Confidence            999999999999753   3446789999999999998875

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.88  E-value=1.8e-21  Score=137.30  Aligned_cols=118  Identities=26%  Similarity=0.356  Sum_probs=104.0

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.+.+++|+++|||++++||++++++|+++|++|++++|+.+.+++...++...  +.++.++.+|+++++++.++++++
T Consensus         5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   82 (256)
T PRK06124          5 QRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--GGAAEALAFDIADEEAVAAAFARI   82 (256)
T ss_pred             cccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHH
Confidence            355688999999999999999999999999999999999988777777766554  456889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ...++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        83 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  124 (256)
T PRK06124         83 DAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPI  124 (256)
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999999763  3457888999999999998875

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.87  E-value=1.1e-21  Score=138.97  Aligned_cols=112  Identities=23%  Similarity=0.310  Sum_probs=93.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+..+++...    . +.++..+++|+++.+++.++++++.++
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~----~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA----H-GDAVVGVEGDVRSLDDHKEAVARCVAA   76 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----c-CCceEEEEeccCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999987766554332    1 456888999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccC----HHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLS----KDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~----~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||+..   +..+.+    .++|++++++|+.+++
T Consensus        77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~  120 (262)
T TIGR03325        77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYL  120 (262)
T ss_pred             hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHH
Confidence            999999999999752   222333    2579999999999876

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2.3e-21  Score=137.50  Aligned_cols=116  Identities=23%  Similarity=0.265  Sum_probs=101.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++|||++++||.+++++|+++|++|++++|+.+..++....+...  +.++.++.+|+++++++.++++++.+
T Consensus         6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (263)
T PRK07814          6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVE   83 (263)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988777776666543  45688899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||||...  +..+.+.++|.+++++|+.+++
T Consensus        84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (263)
T PRK07814         84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAH  123 (263)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHH
Confidence            9999999999999753  3456788999999999998865

>PRK08643 acetoin reductase; Validated

Probab=99.87  E-value=2.3e-21  Score=136.76  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=99.2

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||++++||.++++.|+++|++|++++|+.+..++...++...  +.++.++++|++++++++++++++.+++++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD--GGKAIAVKADVSDRDQVFAAVRQVVDTFGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            789999999999999999999999999999999988777777666544  457888999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  115 (256)
T PRK08643         80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVI  115 (256)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999753  3456789999999999998864

>PRK06398 aldose dehydrogenase; Validated

Probab=99.87  E-value=1.5e-21  Score=138.24  Aligned_cols=104  Identities=29%  Similarity=0.329  Sum_probs=92.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++|||+++|||+++|++|+++|++|++++|+.+.             ..++.++++|++|+++++++++++.++
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~-------------~~~~~~~~~D~~~~~~i~~~~~~~~~~   69 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS-------------YNDVDYFKVDVSNKEQVIKGIDYVISK   69 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc-------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999997543             124778999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||...  +..+.+.++|++++++|+.|++
T Consensus        70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  108 (258)
T PRK06398         70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIF  108 (258)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999763  4557899999999999999876

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.87  E-value=2.7e-21  Score=136.55  Aligned_cols=112  Identities=28%  Similarity=0.394  Sum_probs=98.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+|+++|||++++||.++|+.|+++|++|++++|+.+..++...++     +.++.++.+|++++++++++++++.+.
T Consensus         3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (257)
T PRK07067          3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVER   77 (257)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            477899999999999999999999999999999999988776655544     345788999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (257)
T PRK07067         78 FGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLF  116 (257)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHH
Confidence            999999999999763  4557788999999999999875

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.87  E-value=2.9e-21  Score=136.51  Aligned_cols=114  Identities=21%  Similarity=0.267  Sum_probs=97.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+|+++||||++|||.+++++|+++|++|++++|++. .++...++...  +.++.++.+|+++.+++.++++++.++
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAA--GGEALALTADLETYAGAQAAMAAAVEA   81 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhc--CCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            477899999999999999999999999999999999853 34444555433  456888999999999999999999999


Q ss_pred             CCCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||..   .+..+.+.++|++.+++|+.+++
T Consensus        82 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~  121 (260)
T PRK12823         82 FGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTL  121 (260)
T ss_pred             cCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHH
Confidence            99999999999964   34557889999999999998865

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2e-21  Score=138.44  Aligned_cols=111  Identities=26%  Similarity=0.336  Sum_probs=97.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +|++++++||||++|||+++++.|+++|++|++++|+++.+++....+.      ++.++.+|++|++++.++++++.+.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~   75 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEAD   75 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999887766555441      4678899999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++++++|+.|++
T Consensus        76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  114 (273)
T PRK07825         76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVI  114 (273)
T ss_pred             cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHH
Confidence            999999999999863  4456788999999999998765

>PRK09186 flagellin modification protein A; Provisional

Probab=99.87  E-value=3.4e-21  Score=135.74  Aligned_cols=116  Identities=22%  Similarity=0.243  Sum_probs=100.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++|+++|||++++||+++|+.|+++|++|++++|+.+..++...++....+...+.++.+|++|++++.++++++.+.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999988887777776544334456777999999999999999999999


Q ss_pred             CCccEEEECcccCC-----CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG-----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~-----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||||...     +..+.+.++|...+++|+.+++
T Consensus        82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (256)
T PRK09186         82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSF  122 (256)
T ss_pred             CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHH
Confidence            99999999998542     3457889999999999998875

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.87  E-value=2e-21  Score=137.89  Aligned_cols=113  Identities=14%  Similarity=0.107  Sum_probs=90.1

Q ss_pred             CCCCEEEEeCC--CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~--~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++|+++||||  ++|||+++|++|+++|++|++++|... .++..+++.... +. ...+++|++|+++++++++++.+
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~Dv~d~~~v~~~~~~~~~   80 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEF-GS-DLVFPCDVASDEQIDALFASLGQ   80 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhc-CC-cceeeccCCCHHHHHHHHHHHHH
Confidence            67899999996  679999999999999999999876422 122223333322 22 34689999999999999999999


Q ss_pred             cCCCccEEEECcccCCC------C-CccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT------P-FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~------~-~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|++|||||....      . .+.+.++|++.|++|+.+++
T Consensus        81 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~  125 (260)
T PRK06997         81 HWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFP  125 (260)
T ss_pred             HhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHH
Confidence            99999999999998632      1 24788999999999999876

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.87  E-value=3.7e-21  Score=135.85  Aligned_cols=115  Identities=20%  Similarity=0.297  Sum_probs=98.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++|++|+++||||+++||++++++|+++|++|++++|+++.. +...++...  +.++.++.+|+++.++++++++++.+
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRAL--QPRAEFVQVDLTDDAQCRDAVEQTVA   79 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            568899999999999999999999999999999999988765 555555544  45688999999999999999999999


Q ss_pred             cCCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|.... ..+.+.++|++.+++|+.+++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (258)
T PRK08628         80 KFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYY  118 (258)
T ss_pred             hcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHH
Confidence            99999999999997532 234444899999999998765

>PRK07985 oxidoreductase; Provisional

Probab=99.87  E-value=4.8e-21  Score=138.16  Aligned_cols=115  Identities=25%  Similarity=0.249  Sum_probs=96.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++|+++||||++|||+++|+.|+++|++|++++|+..  ..+++...+...  +.++.++.+|+++.+++.++++++.
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~  123 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC--GRKAVLLPGDLSDEKFARSLVHEAH  123 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            478899999999999999999999999999999887542  344444433332  4568889999999999999999999


Q ss_pred             hcCCCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|++|||||..   .+..+.+.++|++++++|+.|++
T Consensus       124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~  165 (294)
T PRK07985        124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALF  165 (294)
T ss_pred             HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999974   24557889999999999999875

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.87  E-value=5.7e-21  Score=135.34  Aligned_cols=117  Identities=24%  Similarity=0.322  Sum_probs=101.2

Q ss_pred             CCCCCEEEEeCCCC-chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASS-GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~-~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+++|+++|||+++ |||.++++.|+++|++|++++|+.++.++...++....+..++.++++|+++.++++++++++.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            46789999999985 99999999999999999999999887777776665544335688899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|...  +..+.+.++|.+.+++|+.+++
T Consensus        94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  133 (262)
T PRK07831         94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTF  133 (262)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999753  3457788999999999998875

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.87  E-value=4.6e-21  Score=134.59  Aligned_cols=114  Identities=25%  Similarity=0.289  Sum_probs=101.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||+++|||++++++|+++|++|++++|+.+..++....+....++.++.++.+|+++.+++.++++++.+.+++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999998888877777766655678999999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||+|+..  +..+.+.+.+.+.+++|+.+++
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (248)
T PRK08251         82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAAL  117 (248)
T ss_pred             CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHH
Confidence            999999999864  2345678889999999998764

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.87  E-value=6.4e-21  Score=134.59  Aligned_cols=117  Identities=26%  Similarity=0.364  Sum_probs=102.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++.+++|+++|||++++||.+++++|+++|++|++++|+.+..++...++...  +.++.++.+|+++.+++.++++.+.
T Consensus         6 ~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~   83 (255)
T PRK06113          6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAL   83 (255)
T ss_pred             ccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            44578999999999999999999999999999999999888777776666544  4578889999999999999999999


Q ss_pred             hcCCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|++|||+|...+ ..+.+.++|++.+++|+.+++
T Consensus        84 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (255)
T PRK06113         84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFF  123 (255)
T ss_pred             HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHH
Confidence            999999999999997642 336788999999999999876

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=5.4e-21  Score=133.66  Aligned_cols=115  Identities=27%  Similarity=0.344  Sum_probs=100.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++++++|||++++||.+++++|+++|++|++++|+.+..++...++...  +.++.++.+|+++++++.++++++.++
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNE   81 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988777766666543  467889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.++++|++.+++|+.+++
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  120 (239)
T PRK07666         82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVY  120 (239)
T ss_pred             cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999999763  3446788999999999998865

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.87  E-value=5.1e-21  Score=134.38  Aligned_cols=113  Identities=22%  Similarity=0.319  Sum_probs=95.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++|||++++||.++|++|+++|++|++++|+..  ++....+...  +.++..+.+|+++.+++.++++++.+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVEE   77 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999998752  2333334332  456889999999999999999999988


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        78 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (248)
T TIGR01832        78 FGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVF  116 (248)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHH
Confidence            999999999999864  3446788999999999998875

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.87  E-value=6.2e-21  Score=134.78  Aligned_cols=114  Identities=22%  Similarity=0.209  Sum_probs=100.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||++++||.++++.|+++|++|++++|+.+..++....+....+..++.++.+|+++.+++.++++++.+.+++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999998877776666655442356889999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||+|...  +..+.+.++|++.+++|+.|++
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (259)
T PRK12384         82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYF  117 (259)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHH
Confidence            999999999764  3457789999999999999875

>PRK06484 short chain dehydrogenase; Validated

Probab=99.87  E-value=3.4e-21  Score=148.15  Aligned_cols=112  Identities=23%  Similarity=0.364  Sum_probs=99.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ...+|+++||||++|||+++|++|+++|++|++++|+.+.++++..++     +.++..+.+|++|+++++++++++.++
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~  340 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESAFAQIQAR  340 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999999999987777665544     456778899999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||...   +..+.+.++|++++++|+.|++
T Consensus       341 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~  380 (520)
T PRK06484        341 WGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAF  380 (520)
T ss_pred             cCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHH
Confidence            999999999999863   3457889999999999999886

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.87  E-value=6.6e-21  Score=134.95  Aligned_cols=115  Identities=23%  Similarity=0.306  Sum_probs=98.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++||||+++||.++|+.|+++|++|++++|+. +..+....++...  +.++.++.+|++|.+++.++++++.+
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999988854 3445555555443  46788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  121 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAF  121 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999999999764  3446788999999999998875

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.86  E-value=8.1e-21  Score=134.15  Aligned_cols=115  Identities=30%  Similarity=0.288  Sum_probs=101.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++|||++++||.++++.|+++|++|++++|+++..++..+.+...  +.++.++++|+++.++++++++++...
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAER   81 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998877777777554  567888999999999999999999888


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|+..+++|+.+++
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  120 (262)
T PRK13394         82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAF  120 (262)
T ss_pred             cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHH
Confidence            999999999999863  3346788999999999998864

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.86  E-value=6.3e-21  Score=133.97  Aligned_cols=116  Identities=28%  Similarity=0.325  Sum_probs=99.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++|||++++||.+++++|+++|++|++++|+++..+...+++...  +..+.++.+|+++.++++++++++.+
T Consensus         2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (250)
T PRK07774          2 GRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSAKAMADATVS   79 (250)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999977766666665543  34677889999999999999999999


Q ss_pred             cCCCccEEEECcccCC-----CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG-----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~-----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|+||||||...     +..+.+.++|++.+++|+.+++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (250)
T PRK07774         80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGAL  122 (250)
T ss_pred             HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHH
Confidence            9999999999999853     2346788999999999998875

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.86  E-value=5.7e-21  Score=134.03  Aligned_cols=112  Identities=24%  Similarity=0.347  Sum_probs=97.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|+++||||+++||.+++++|+++|++|++++|+.+..++..+++     +.++.++++|+++.+++.++++.+.+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQALAEA   77 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999876665554443     456888999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (249)
T PRK06500         78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPY  116 (249)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999763  3346788999999999999875

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.86  E-value=8.7e-21  Score=133.32  Aligned_cols=114  Identities=32%  Similarity=0.415  Sum_probs=100.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||+++||.+++++|+++|++|++++|+.+..++...++.   .+.++..+++|++|+++++++++++.++
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~   78 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAAR   78 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4779999999999999999999999999999999999877766666554   2567889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (252)
T PRK06138         79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVF  117 (252)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHH
Confidence            999999999999764  3446788999999999998875

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.1e-20  Score=132.60  Aligned_cols=115  Identities=31%  Similarity=0.412  Sum_probs=101.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|+++|||++++||.++++.|+++|++|++++|++++.++...+++..  +.++.++++|+++.++++++++++.+.
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA--GGRAHAIAADLADPASVQRFFDAAAAA   81 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988877777766554  457889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  120 (250)
T PRK12939         82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTF  120 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999864  3456788999999999998875

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.4e-20  Score=132.82  Aligned_cols=117  Identities=30%  Similarity=0.507  Sum_probs=102.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ..++.+|+++|||++++||.++++.|+++|++|++++|+.+.+++...++...  +.++.++.+|+++.++++++++++.
T Consensus         4 ~~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (258)
T PRK06949          4 SINLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQSIKAAVAHAE   81 (258)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988887777766544  3568899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|++|||+|...  +..+.+.++|+.++++|+.+++
T Consensus        82 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (258)
T PRK06949         82 TEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAF  122 (258)
T ss_pred             HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhH
Confidence            99999999999999753  3446678999999999998875

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.86  E-value=5.4e-21  Score=134.77  Aligned_cols=108  Identities=23%  Similarity=0.314  Sum_probs=94.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||+++++.|+++|++|++++|+.+.      .  .  .+..+.++++|++++++++++++++.+
T Consensus         2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~------~--~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   71 (252)
T PRK07856          2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE------T--V--DGRPAEFHAADVRDPDQVAALVDAIVE   71 (252)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh------h--h--cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999998654      1  1  145678899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||||...  +..+.+.++|++++++|+.+++
T Consensus        72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  111 (252)
T PRK07856         72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPL  111 (252)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999763  3446788999999999999875

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.86  E-value=7.8e-21  Score=134.14  Aligned_cols=111  Identities=19%  Similarity=0.230  Sum_probs=93.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++.+|+++|||+++|||+++|+.|+++|++|++++++.+...   .++...    .+.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~---~~l~~~----~~~~~~~Dl~~~~~~~~~~~~~~~   75 (255)
T PRK06463          3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEA---KELREK----GVFTIKCDVGNRDQVKKSKEVVEK   75 (255)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHH---HHHHhC----CCeEEEecCCCHHHHHHHHHHHHH
Confidence            3577999999999999999999999999999988876543322   223221    367889999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|...  +..+.+.++|++++++|+.|++
T Consensus        76 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  115 (255)
T PRK06463         76 EFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAI  115 (255)
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHH
Confidence            9999999999999863  4456789999999999999875

>PRK05855 short chain dehydrogenase; Validated

Probab=99.86  E-value=7.2e-21  Score=147.35  Aligned_cols=116  Identities=28%  Similarity=0.298  Sum_probs=103.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ..+.+++++||||++|||++++++|+++|++|++++|+.+.+++....+...  +.++.++.+|++|.++++++++++.+
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~  388 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA--GAVAHAYRVDVSDADAMEAFAEWVRA  388 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999988888877777654  45788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||||+..  +..+.+.++|++++++|+.|++
T Consensus       389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  428 (582)
T PRK05855        389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVI  428 (582)
T ss_pred             hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999864  4457889999999999999875

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.2e-20  Score=133.58  Aligned_cols=114  Identities=25%  Similarity=0.403  Sum_probs=97.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|+++|||++++||++++++|+++|++|++++|+.+ ..+...++...  +.++.++.+|+++.++++++++++.++
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   79 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEK   79 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999864 33344444332  456888999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (263)
T PRK08226         80 EGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVW  118 (263)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHH
Confidence            999999999999763  4456788999999999999875

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=4.6e-21  Score=126.17  Aligned_cols=114  Identities=30%  Similarity=0.371  Sum_probs=103.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+.+|-+++|||+++|+|++.+.+|+++|+.|++.+-..++..+..+++     +.++.+.++|++++++++..+...+.
T Consensus         5 rs~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel-----g~~~vf~padvtsekdv~aala~ak~   79 (260)
T KOG1199|consen    5 RSTKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL-----GGKVVFTPADVTSEKDVRAALAKAKA   79 (260)
T ss_pred             hhhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh-----CCceEEeccccCcHHHHHHHHHHHHh
Confidence            3467889999999999999999999999999999999998888888887     88899999999999999999999999


Q ss_pred             cCCCccEEEECcccCCC--------CCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICGT--------PFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~--------~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +||++|.+|||||+...        ....+.|++.+++++|++|+|+
T Consensus        80 kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfn  126 (260)
T KOG1199|consen   80 KFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFN  126 (260)
T ss_pred             hccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeee
Confidence            99999999999998631        1236889999999999999985

>PRK06484 short chain dehydrogenase; Validated

Probab=99.86  E-value=6.8e-21  Score=146.50  Aligned_cols=111  Identities=25%  Similarity=0.387  Sum_probs=98.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..+|+++|||+++|||+++++.|+++|++|++++|+.+.+++...++     +.++.++++|++++++++++++++.+++
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLHREF   77 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999988777665554     4567889999999999999999999999


Q ss_pred             CCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|+||||||+..    +..+.+.++|++++++|+.+++
T Consensus        78 g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (520)
T PRK06484         78 GRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAY  117 (520)
T ss_pred             CCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHH
Confidence            99999999999842    3457889999999999999876

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.86  E-value=1.3e-20  Score=132.42  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=99.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEE-EecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIM-ADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      |++|+++||||+++||+++++.|+++|++|++ ..|+.++.++..++++..  +.++.++.+|++|++++.++++++.+.
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEAL--GRKALAVKANVGDVEKIKEMFAQIDEE   79 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999776 578877777766666554  567889999999999999999999999


Q ss_pred             CCCccEEEECcccC--CCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||+|..  .+..+.+.++|...+++|+.+++
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (250)
T PRK08063         80 FGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALL  118 (250)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            99999999999975  35567889999999999998875

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.5e-20  Score=132.92  Aligned_cols=113  Identities=27%  Similarity=0.369  Sum_probs=97.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++|||+++|||+++++.|+++|++|++++|+.++.++...++.... +.++.++.+|+++++++++++++   
T Consensus         3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~---   78 (259)
T PRK06125          3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAE---   78 (259)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHH---
Confidence            35789999999999999999999999999999999999888877777665543 45688899999999999888764   


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        79 -~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (259)
T PRK06125         79 -AGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYI  117 (259)
T ss_pred             -hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence             478999999999763  4557899999999999999876

>PRK12743 oxidoreductase; Provisional

Probab=99.86  E-value=1.2e-20  Score=133.32  Aligned_cols=113  Identities=23%  Similarity=0.331  Sum_probs=96.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++|+++||||+++||++++++|+++|++|+++.+ +.+..+....++...  +.++.++.+|+++.++++++++++.+++
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH--GVRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3689999999999999999999999999988865 445556656666544  5678899999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|+|+|...  +..+.+.++|++++++|+.+++
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAF  116 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            99999999999864  3446789999999999999875

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.7e-20  Score=132.61  Aligned_cols=115  Identities=25%  Similarity=0.320  Sum_probs=96.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +..+|+++|||++++||.+++++|+++|++|+++.+. .+..+....++...  +.++.++.+|++|.+++.++++++.+
T Consensus         6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~   83 (258)
T PRK09134          6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARASA   83 (258)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999887664 44555555555443  45688999999999999999999998


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||||...  +..+.+.++|++++++|+.|++
T Consensus        84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (258)
T PRK09134         84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPF  123 (258)
T ss_pred             HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHH
Confidence            8999999999999764  3457788999999999998875

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.7e-20  Score=132.62  Aligned_cols=115  Identities=25%  Similarity=0.311  Sum_probs=95.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc----chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM----AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~----~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ++++|+++|||++++||.++|+.|+++|++|++++++.    +..++..+++...  +.++.++++|+++++++++++++
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~   82 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLTTAAAVEKLFDD   82 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcCCHHHHHHHHHH
Confidence            46789999999999999999999999999976665432    2344444444433  45788899999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|++|||||...  +..+.+.++|++++++|+.+++
T Consensus        83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  125 (257)
T PRK12744         83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAF  125 (257)
T ss_pred             HHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHH
Confidence            9999999999999999753  3456788999999999999875

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=1.6e-20  Score=131.78  Aligned_cols=114  Identities=31%  Similarity=0.405  Sum_probs=99.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.+|+++||||+++||.+++++|+++|++|++++|+.+..++....+..   +.++.++.+|++|.++++++++++.++
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALER   78 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998877776666543   356889999999999999999999888


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...   +..+.+.++|++.+++|+.+++
T Consensus        79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (251)
T PRK07231         79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPY  118 (251)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHH
Confidence            999999999999753   3446789999999999998864

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.7e-20  Score=132.12  Aligned_cols=114  Identities=26%  Similarity=0.291  Sum_probs=94.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh-
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA-   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-   99 (138)
                      +++|+++|||+++|||.++++.|+++|++|+++. ++.+..++...++...  +.++..+.+|+++.+++..+++++.+ 
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDNE   79 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhc--CCceEEEecccCCHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999998875 5556666666666543  45678889999999999999988765 


Q ss_pred             ---cCC--CccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 ---RAL--PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ---~~~--~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         .++  ++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~  124 (252)
T PRK12747         80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPF  124 (252)
T ss_pred             hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHH
Confidence               234  8999999999753  3456788999999999999876

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.85  E-value=1.6e-20  Score=132.76  Aligned_cols=116  Identities=22%  Similarity=0.303  Sum_probs=100.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++|||++++||.+++++|+++|++|++++|+.+..+.....+...  +.++.++.+|++|+++++++++++.+
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~~   85 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETLE   85 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999987777666666543  45678899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|...  +..+.+.+.|++.+++|+.+++
T Consensus        86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  125 (259)
T PRK08213         86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLF  125 (259)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHH
Confidence            8899999999999753  3456788999999999998875

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.85  E-value=1.9e-20  Score=131.00  Aligned_cols=112  Identities=27%  Similarity=0.393  Sum_probs=97.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++|||++++||+++++.|+++|+.|++.+|+.+++++....+     +.++.++.+|+++.++++++++++.+.
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEAD   77 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999877766654433     346788899999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (245)
T PRK12936         78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATF  116 (245)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHH
Confidence            999999999999864  3446788899999999998865

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.2e-20  Score=133.36  Aligned_cols=111  Identities=25%  Similarity=0.271  Sum_probs=95.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||++++||.+++++|+++|++|++++|+.+.+++...++...  + ++.++.+|+++++++.++++++.+++++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA--A-RVSVYAADVRDADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999999999987776655544321  2 7889999999999999999999999999


Q ss_pred             ccEEEECcccCCC--CC-ccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGT--PF-MLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~--~~-~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||+|....  .. ..+.++|++.+++|+.|++
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~  115 (257)
T PRK07024         79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMV  115 (257)
T ss_pred             CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHH
Confidence            9999999998642  22 2678999999999999875

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=1.8e-20  Score=132.59  Aligned_cols=115  Identities=23%  Similarity=0.310  Sum_probs=95.1

Q ss_pred             CCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecC-----------cchhHHHHHHHHhcCCCCeeEEEEecCCCH
Q 042455           21 DAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRN-----------MAAGRDVKVAIVMQNPAAKVDVMELDLSSL   87 (138)
Q Consensus        21 ~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~-----------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~   87 (138)
                      .+++|+++|||++  +|||+++|++|+++|++|+++++.           .+...+...++...  +.++..+++|+++.
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~   80 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKN--GVKVSSMELDLTQN   80 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhc--CCeEEEEEcCCCCH
Confidence            5789999999998  499999999999999999987642           11222333344433  56788999999999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           88 ASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++++++.+.++++|++|||||...  +..+.+.++|++++++|+.+++
T Consensus        81 ~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  132 (256)
T PRK12859         81 DAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATT  132 (256)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999763  4457899999999999999876

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.85  E-value=1.5e-20  Score=133.02  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=95.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++|||+++|||+++|++|+++|++|++++|+++..++...++...   .++.++++|++|+++++++++++.++++++|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            6999999999999999999999999999999988887777776543   3578899999999999999999999999999


Q ss_pred             EEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +||||||...    +..+.+.++|.+.+.+|+.+++
T Consensus        79 ~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  114 (259)
T PRK08340         79 ALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPG  114 (259)
T ss_pred             EEEECCCCCCCCccccccccHHHHHHHHhhcchHHH
Confidence            9999999752    2446788999999999988764

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.85  E-value=1.2e-20  Score=133.79  Aligned_cols=109  Identities=28%  Similarity=0.391  Sum_probs=94.3

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.+++++|+++|||+++|||.++++.|+++|++|++++++....+           ..++.++++|++++++++++++++
T Consensus         3 ~~~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~   71 (266)
T PRK06171          3 DWLNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEEVNHTVAEI   71 (266)
T ss_pred             ccccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-----------cCceEEEEccCCCHHHHHHHHHHH
Confidence            345688999999999999999999999999999999998865432           235778899999999999999999


Q ss_pred             HhcCCCccEEEECcccCCC-----------CCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGT-----------PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~-----------~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|++|||||...+           ..+.+.++|++++++|+.+++
T Consensus        72 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (266)
T PRK06171         72 IEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVF  122 (266)
T ss_pred             HHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHH
Confidence            9999999999999997532           135788999999999999876

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.5e-20  Score=132.87  Aligned_cols=117  Identities=22%  Similarity=0.168  Sum_probs=100.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +|++|+++|||++++||.++++.|+++|++|++++|+.+..+....++.....+.++.++.+|++++++++++++++.++
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999999998777766666654432356888999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...   +..+.+.++|..++++|+.+++
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (276)
T PRK05875         84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTM  123 (276)
T ss_pred             cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999753   3446788999999999998875

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.85  E-value=2e-20  Score=131.25  Aligned_cols=114  Identities=19%  Similarity=0.176  Sum_probs=95.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      |++|+++|||++++||++++++|+++|++|++.. ++....++...++...  +.++..+.+|++|.++++++++++.+.
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKAL--GFDFIASEGNVGDWDSTKAAFDKVKAE   78 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999987754 4444444445555433  566888899999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (246)
T PRK12938         79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLF  117 (246)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999864  3456789999999999998865

>PRK05599 hypothetical protein; Provisional

Probab=99.85  E-value=1.3e-20  Score=132.69  Aligned_cols=111  Identities=18%  Similarity=0.267  Sum_probs=94.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++++||||++|||+++|++|+ +|++|++++|+.+++++..++++... ...+.++++|++|+++++++++++.+.+|++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            479999999999999999999 59999999999988888888876552 2357889999999999999999999999999


Q ss_pred             cEEEECcccCCC--CCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGT--PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|||+|...+  ..+.+.+++.+++++|+.+++
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~  113 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQV  113 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHH
Confidence            999999998643  235667778888999987764

>PLN00015 protochlorophyllide reductase

Probab=99.85  E-value=1.1e-20  Score=137.13  Aligned_cols=108  Identities=40%  Similarity=0.591  Sum_probs=94.0

Q ss_pred             EEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           28 IVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        28 litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      +|||+++|||++++++|+++| ++|++++|+.+..++...++...  +.++.++++|++|.++++++++++.+.++++|+
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~   78 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMP--KDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV   78 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence            589999999999999999999 99999999988777766665422  456888999999999999999999988899999


Q ss_pred             EEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          107 LINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       107 lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ||||||+..   +..+.+.++|+++|++|+.|++
T Consensus        79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~  112 (308)
T PLN00015         79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHF  112 (308)
T ss_pred             EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHH
Confidence            999999863   2346789999999999999976

>PRK06182 short chain dehydrogenase; Validated

Probab=99.85  E-value=1.5e-20  Score=134.02  Aligned_cols=108  Identities=31%  Similarity=0.378  Sum_probs=93.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|+++|||+++|||+++++.|+++|++|++++|+.+++++..    .    ..+.++.+|++|.++++++++++.+.+
T Consensus         1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~   72 (273)
T PRK06182          1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEE   72 (273)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999877654432    1    236788999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||||...  +..+.+.++|+..+++|+.|++
T Consensus        73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  110 (273)
T PRK06182         73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAA  110 (273)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHH
Confidence            99999999999863  4557889999999999998764

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.7e-20  Score=131.92  Aligned_cols=113  Identities=24%  Similarity=0.262  Sum_probs=98.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++++++||||+++||.+++++|+++|++|++++|+++..++...++ . . +.++.++.+|++|.++++++++.+.+ 
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~-~-~~~~~~~~~D~~d~~~~~~~~~~~~~-   77 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-P-Y-PGRHRWVVADLTSEAGREAVLARARE-   77 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h-c-CCceEEEEccCCCHHHHHHHHHHHHh-
Confidence            467899999999999999999999999999999999988877766665 2 2 45788999999999999999999876 


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||...  +..+.+.+++.+.+++|+.|++
T Consensus        78 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  116 (263)
T PRK09072         78 MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPM  116 (263)
T ss_pred             cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHH
Confidence            789999999999763  3456788999999999998865

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2e-20  Score=133.47  Aligned_cols=111  Identities=23%  Similarity=0.249  Sum_probs=96.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|+++|||++++||++++++|+++|++|++++|+.+.+++....+     +..+..+++|++|++++.++++++.+.+
T Consensus         1 ~~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   75 (275)
T PRK08263          1 MMEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHF   75 (275)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999999999987765544332     3457888999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||||...  +..+.+.++|++++++|+.+++
T Consensus        76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  113 (275)
T PRK08263         76 GRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGAL  113 (275)
T ss_pred             CCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHH
Confidence            99999999999874  4557889999999999999875

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.85  E-value=2.3e-20  Score=130.33  Aligned_cols=107  Identities=19%  Similarity=0.218  Sum_probs=91.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||+++|||++++++|+++|++|++++|+++...+   .+...  +  +.++.+|+++.++++++++++.+.+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~~~~--~--~~~~~~D~~~~~~~~~~~~~~~~~~~~   74 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAID---GLRQA--G--AQCIQADFSTNAGIMAFIDELKQHTDG   74 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHH---HHHHc--C--CEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence            6899999999999999999999999999999998765432   22222  2  567899999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||||...  ...+.+.++|++++++|+.+++
T Consensus        75 id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~  110 (236)
T PRK06483         75 LRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPY  110 (236)
T ss_pred             ccEEEECCccccCCCcCccCHHHHHHHHHHcchHHH
Confidence            999999999753  2446788999999999999876

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=2.9e-20  Score=131.32  Aligned_cols=115  Identities=27%  Similarity=0.307  Sum_probs=95.0

Q ss_pred             CCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCc-----------chhHHHHHHHHhcCCCCeeEEEEecCCCH
Q 042455           21 DAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNM-----------AAGRDVKVAIVMQNPAAKVDVMELDLSSL   87 (138)
Q Consensus        21 ~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~-----------~~~~~~~~~l~~~~~~~~~~~~~~D~~~~   87 (138)
                      .+++|+++||||++  |||.+++++|+++|++|++++|++           .....+..++...  +.++.++.+|+++.
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~   79 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESY--GVRCEHMEIDLSQP   79 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence            46789999999994  999999999999999999999872           2222233334332  45789999999999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           88 ASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++.++++++.+.++++|++|||||...  +..+.+.++|++.+++|+.|++
T Consensus        80 ~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  131 (256)
T PRK12748         80 YAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATM  131 (256)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999763  4456788999999999998875

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.85  E-value=3.3e-20  Score=129.80  Aligned_cols=113  Identities=22%  Similarity=0.267  Sum_probs=98.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++|+++|||++++||+++++.|+++|++|++++|+++..++....+...  +.++.++.+|+++++++.++++++.++++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4589999999999999999999999999999999988777766666543  45788899999999999999999999999


Q ss_pred             CccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        83 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  119 (241)
T PRK07454         83 CPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVF  119 (241)
T ss_pred             CCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHH
Confidence            9999999999764  3346788999999999998865

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.85  E-value=3.6e-20  Score=130.50  Aligned_cols=114  Identities=28%  Similarity=0.286  Sum_probs=100.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|+++|||++++||.+++++|+++|++|++++|+.+..++...++...  +.++..+.+|+++.++++++++++.+.+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999988877777666554  5678899999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|+|+|...  +..+.+.++++..+++|+.+++
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAF  117 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhH
Confidence            99999999999764  3446788899999999998865

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2e-20  Score=133.63  Aligned_cols=111  Identities=23%  Similarity=0.298  Sum_probs=95.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +.+|+++||||+++||.+++++|+++|++|++++|+.+..+.+...    . +.++..+.+|++|.+++.++++++.+.+
T Consensus         2 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~----~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~   76 (277)
T PRK06180          2 SSMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL----H-PDRALARLLDVTDFDAIDAVVADAEATF   76 (277)
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh----c-CCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999987765543322    2 3467888999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||||...  +..+.+.++|++++++|+.|++
T Consensus        77 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  114 (277)
T PRK06180         77 GPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAV  114 (277)
T ss_pred             CCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHH
Confidence            99999999999863  4557788999999999998875

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.85  E-value=1.1e-20  Score=137.76  Aligned_cols=114  Identities=23%  Similarity=0.336  Sum_probs=91.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC--HHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS--LASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~   99 (138)
                      ..|++++||||++|||+++|++|+++|++|++++|+++++++..+++...+++.++..+.+|+++  .+.++.+.+.+. 
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~-  129 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE-  129 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc-
Confidence            45899999999999999999999999999999999999988888888766555678889999985  333444443331 


Q ss_pred             cCCCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ..++|++|||||+..    +..+.+.++|++++++|+.|++
T Consensus       130 -~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  170 (320)
T PLN02780        130 -GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTT  170 (320)
T ss_pred             -CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHH
Confidence             124679999999863    2447889999999999999875

>PRK06720 hypothetical protein; Provisional

Probab=99.85  E-value=4.7e-20  Score=123.26  Aligned_cols=94  Identities=26%  Similarity=0.357  Sum_probs=82.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +.+++|+++|||+++|||.++|+.|++.|++|++++|+.+..++...++...  +.+..++.+|+++.++++++++++.+
T Consensus        12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~v~~~~~   89 (169)
T PRK06720         12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL--GGEALFVSYDMEKQGDWQRVISITLN   89 (169)
T ss_pred             cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999887776666666543  45577889999999999999999999


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      .+|++|++|||||...
T Consensus        90 ~~G~iDilVnnAG~~~  105 (169)
T PRK06720         90 AFSRIDMLFQNAGLYK  105 (169)
T ss_pred             HcCCCCEEEECCCcCC
Confidence            9999999999999864

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.85  E-value=4.4e-20  Score=129.24  Aligned_cols=115  Identities=29%  Similarity=0.361  Sum_probs=97.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +.++|+++|||++++||+++++.|+++|++++++.++.+ ..++..+++...  +.++.++.+|+++.++++++++++.+
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAET   79 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999988877644 344555555443  56789999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|...  +..+.+.++|++++++|+.+++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  119 (245)
T PRK12937         80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAF  119 (245)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHH
Confidence            9999999999999763  3446788999999999998875

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2e-20  Score=132.31  Aligned_cols=109  Identities=25%  Similarity=0.307  Sum_probs=94.1

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +..++++|+++|||+++|||.++++.|+++|++|++++|+++..      .     ...+.++++|++|.++++++++++
T Consensus         3 ~~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~------~-----~~~~~~~~~D~~~~~~~~~~~~~~   71 (260)
T PRK06523          3 FFLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD------L-----PEGVEFVAADLTTAEGCAAVARAV   71 (260)
T ss_pred             cCcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh------c-----CCceeEEecCCCCHHHHHHHHHHH
Confidence            44568899999999999999999999999999999999985431      1     345788999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|++|||||...    +..+.+.++|++.+++|+.|++
T Consensus        72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  115 (260)
T PRK06523         72 LERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAV  115 (260)
T ss_pred             HHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHH
Confidence            999999999999999642    2346788999999999999875

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.85  E-value=3.4e-20  Score=131.94  Aligned_cols=111  Identities=20%  Similarity=0.269  Sum_probs=98.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||+++||++++++|+++|++|++++|+.+.+++...++...  +.++.++++|+++++++..+++++.++++++
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA--GGDGFYQRCDVRDYSQLTALAQACEEKWGGI   78 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999999988888877777654  5678889999999999999999999999999


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+||||+|...  +..+.+.++|++++++|+.+++
T Consensus        79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  113 (270)
T PRK05650         79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVV  113 (270)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHH
Confidence            99999999864  3557788999999999998765

>TIGR02415 23BDH acetoin reductases

Probab=99.85  E-value=3.7e-20  Score=130.32  Aligned_cols=111  Identities=23%  Similarity=0.336  Sum_probs=98.1

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++|||++++||++++++|+++|++|++++|+.+..++...++...  +.++.++.+|++|++++.++++++.++++++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   78 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF   78 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999999977777766666544  5678899999999999999999999999999


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  113 (254)
T TIGR02415        79 DVMVNNAGVAPITPILEITEEELKKVYNVNVKGVL  113 (254)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHH
Confidence            99999999763  4457889999999999998865

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.84  E-value=2.9e-20  Score=146.85  Aligned_cols=119  Identities=29%  Similarity=0.358  Sum_probs=103.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ...+.+|+++|||+++|||++++++|+++|++|++++|+.+..+.....+....+...+..+++|++|.++++++++++.
T Consensus       409 ~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~  488 (676)
T TIGR02632       409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA  488 (676)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988777766666544333467889999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+|++|++|||||...  +..+.+.++|+..+++|+.+++
T Consensus       489 ~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~  529 (676)
T TIGR02632       489 LAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYF  529 (676)
T ss_pred             HhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            99999999999999763  3456789999999999998865

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.84  E-value=4.7e-20  Score=129.46  Aligned_cols=114  Identities=28%  Similarity=0.297  Sum_probs=100.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++|+++||||+++||.+++++|+++|++|++++|+.+..+++...+...  +.++.++.+|+++.++++++++++.+.+
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999988777776666554  4568899999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGAL  116 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999999753  3446788999999999998875

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.84  E-value=5.1e-20  Score=131.51  Aligned_cols=115  Identities=29%  Similarity=0.318  Sum_probs=98.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|+++||||+++||.++++.|+++|++|++++|+.+..++....+.....+.++.++.+|++|++++++ ++++.+.+
T Consensus         1 ~~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~   79 (280)
T PRK06914          1 MNKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI   79 (280)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence            45789999999999999999999999999999999987777766555443324578899999999999999 99988889


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||+|...  ...+.+.++|++.+++|+.+++
T Consensus        80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (280)
T PRK06914         80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAI  117 (280)
T ss_pred             CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHH
Confidence            99999999999764  3346788999999999998865

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.84  E-value=6.9e-20  Score=131.92  Aligned_cols=115  Identities=21%  Similarity=0.276  Sum_probs=97.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++|||++++||.+++++|+++|++|++++|+.+. .+.....+...  +.++.++.+|+++.++++++++++.+
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~  120 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVR  120 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999998643 44444444332  46788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||||...   +..+.+.++|.+.+++|+.+++
T Consensus       121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~  161 (290)
T PRK06701        121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYF  161 (290)
T ss_pred             HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHH
Confidence            9999999999999753   3446889999999999999875

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.7e-20  Score=132.31  Aligned_cols=105  Identities=35%  Similarity=0.422  Sum_probs=91.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++|+++||||+++||++++++|+++|++|++++|+.+..+.          ...+.++++|++|+++++++++.+.++++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   72 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAG   72 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999999999998654321          23477899999999999999999999999


Q ss_pred             CccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+||||+|...  +..+.+.++|++++++|+.|++
T Consensus        73 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  109 (270)
T PRK06179         73 RIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGIL  109 (270)
T ss_pred             CCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999863  4456789999999999998865

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.84  E-value=5.7e-20  Score=129.54  Aligned_cols=113  Identities=26%  Similarity=0.397  Sum_probs=95.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++.+|+++||||+++||.++++.|+++|++|++++|+.+.. +...++.    +..+..+.+|++++++++++++++.+
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~   85 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQLL----GGNAKGLVCDVSDSQSVEAAVAAVIS   85 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHhh----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999987542 2222221    34577899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||+|...  +..+.+.++|++.+++|+.|++
T Consensus        86 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  125 (255)
T PRK06841         86 AFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSF  125 (255)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHH
Confidence            9999999999999763  3446788999999999999875

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.84  E-value=4.5e-20  Score=125.00  Aligned_cols=109  Identities=22%  Similarity=0.297  Sum_probs=96.4

Q ss_pred             CCCEEEEeCCC-CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh-c
Q 042455           23 AGVTAIVTGAS-SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA-R  100 (138)
Q Consensus        23 ~~k~~litG~~-~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~  100 (138)
                      ..|.++|||++ ||||.+++++|.++|+.|+.+.|..+...++..+.       .+..+.+|+++++++..+..+++. .
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~~   78 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRANP   78 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhCC
Confidence            35789999886 79999999999999999999999999887766432       378899999999999999999998 7


Q ss_pred             CCCccEEEECcccC--CCCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|++|+|+||||..  .|..+.+.+..++.|++|++|+++
T Consensus        79 ~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~ir  118 (289)
T KOG1209|consen   79 DGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIR  118 (289)
T ss_pred             CCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeeh
Confidence            89999999999987  467789999999999999999763

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.84  E-value=9.2e-20  Score=130.12  Aligned_cols=115  Identities=25%  Similarity=0.315  Sum_probs=99.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+..|+++||||+++||++++++|+++|++|++++|+.+..++...++...  +.++.++.+|+++++++.++++++.+.
T Consensus         7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (274)
T PRK07775          7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD--GGEAVAFPLDVTDPDSVKSFVAQAEEA   84 (274)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            466789999999999999999999999999999999877766665555443  457888999999999999999999888


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||...  +..+.+.+.|++.+++|+.|++
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (274)
T PRK07775         85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGAN  123 (274)
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHH
Confidence            899999999999764  3446788999999999998875

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.84  E-value=7.6e-20  Score=129.21  Aligned_cols=115  Identities=29%  Similarity=0.421  Sum_probs=99.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+++|+++|||++++||..++++|+++|++ |++++|+.+.......++...  +.++.++.+|+++++++.++++.+.+
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE   80 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            478899999999999999999999999998 999999877766665555433  56788899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|++|||+|...  +..+.+.++|+.++++|+.+++
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  120 (260)
T PRK06198         81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPF  120 (260)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999999999764  2346789999999999998865

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.84  E-value=9.2e-20  Score=127.93  Aligned_cols=115  Identities=24%  Similarity=0.340  Sum_probs=96.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++.+|+++|||++++||.+++++|+++|++|+++.+ +++..++....+...  +.++.++++|+++++++.++++++.+
T Consensus         3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (247)
T PRK12935          3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE--GHDVYAVQADVSKVEDANRLVEEAVN   80 (247)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999999999999887654 445555555555443  46789999999999999999999999


Q ss_pred             cCCCccEEEECcccCCC--CCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT--PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|||||...+  ..+.+.+.+++.+++|+.+++
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  120 (247)
T PRK12935         81 HFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVF  120 (247)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999999998643  336788999999999999875

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=1e-19  Score=127.71  Aligned_cols=115  Identities=21%  Similarity=0.251  Sum_probs=99.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++++++|||++++||.++++.|+++|++|++++|+.++.++..+++...  +.++.++++|+++.++++++++.+.+.
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAED   79 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999988777776666554  467888999999999999999999888


Q ss_pred             CCCccEEEECcccCCCC-----------CccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTP-----------FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~-----------~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...+.           .+.+.++|..++++|+.|++
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  127 (253)
T PRK08217         80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVF  127 (253)
T ss_pred             cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHH
Confidence            89999999999975321           35678899999999998875

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.84  E-value=7.9e-20  Score=127.83  Aligned_cols=116  Identities=22%  Similarity=0.259  Sum_probs=99.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC--HHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS--LASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~   98 (138)
                      +|++|+++|||++++||.+++++|+++|++|++++|+++..++...++.... +..+..+.+|+++  .+++.++++++.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~i~   81 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-HPEPFAIRFDLMSAEEKEFEQFAATIA   81 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-CCCcceEEeeecccchHHHHHHHHHHH
Confidence            4778999999999999999999999999999999999988777777665432 3456788999975  578999999998


Q ss_pred             hcC-CCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARA-LPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~-~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+ +++|++|||||...   +..+.+.++|.+.+++|+.|++
T Consensus        82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~  124 (239)
T PRK08703         82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPM  124 (239)
T ss_pred             HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHH
Confidence            888 88999999999753   4557889999999999999875

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.84  E-value=6.7e-20  Score=130.63  Aligned_cols=112  Identities=27%  Similarity=0.358  Sum_probs=96.6

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||++|||.++++.|+++|++|++++|+.+..++...++.... +..+.++.+|+++++++.++++++.+.++++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-GTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            579999999999999999999999999999999887777766665442 2335667999999999999999999999999


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|||+|...  +..+.+.++|++.+++|+.|++
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  114 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPI  114 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH
Confidence            99999999753  4557899999999999999875

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.83  E-value=8e-20  Score=129.27  Aligned_cols=109  Identities=27%  Similarity=0.258  Sum_probs=94.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc-CCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR-ALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~  103 (138)
                      |+++||||+++||+++++.|+++|++|++++|+.+..++....+.    +.++.++++|+++.+++.++++++.++ +++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            789999999999999999999999999999999887766655442    457889999999999999999988776 789


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+||||||...  +..+.+.+++++++++|+.+++
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  113 (260)
T PRK08267         78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVL  113 (260)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH
Confidence            999999999864  3446788999999999998875

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.83  E-value=1e-19  Score=127.99  Aligned_cols=112  Identities=18%  Similarity=0.236  Sum_probs=92.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++||||+++||+++++.|+++|++|+++.++ .+..+.+..++     +.++.++.+|++++++++++++++.+
T Consensus         2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (253)
T PRK08642          2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQVQAMFATATE   76 (253)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999887654 33344333322     34688899999999999999999988


Q ss_pred             cCCC-ccEEEECcccCC--------CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALP-LNILINKAGICG--------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~-id~lv~~ag~~~--------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+++ +|++|||||...        +..+.+.++|.+.+++|+.+++
T Consensus        77 ~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (253)
T PRK08642         77 HFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGAL  123 (253)
T ss_pred             HhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHH
Confidence            8887 999999998631        2346788999999999999875

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.83  E-value=9.5e-20  Score=127.84  Aligned_cols=112  Identities=31%  Similarity=0.338  Sum_probs=94.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +|+++|||++++||.+++++|+++|++|+++.+ +++..++....+...  +.++.++.+|++|.++++++++++.++++
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ--GGEALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhC--CCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999888764 444455555555443  45678899999999999999999999999


Q ss_pred             CccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++|||+|...   +..+.+.++|++++++|+.+++
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (248)
T PRK06123         80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSF  117 (248)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999864   2346788999999999999875

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.83  E-value=1.3e-19  Score=127.39  Aligned_cols=115  Identities=33%  Similarity=0.471  Sum_probs=96.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch--hHHHHHHHHhcCCC-CeeEEEEecCCC-HHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA--GRDVKVAIVMQNPA-AKVDVMELDLSS-LASVRKFASD   96 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~--~~~~~~~l~~~~~~-~~~~~~~~D~~~-~~~~~~~~~~   96 (138)
                      ++.+|+++|||+++|||+++|+.|+++|++|+++.++.+.  .+.......  ..+ ..+.+..+|+++ .++++.+++.
T Consensus         2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~   79 (251)
T COG1028           2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAA   79 (251)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHH
Confidence            5678999999999999999999999999998888887664  333333332  112 368888999998 9999999999


Q ss_pred             HHhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +...+|++|++|||||...   +..+.+.++|++++++|+.|++
T Consensus        80 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~  123 (251)
T COG1028          80 AEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAF  123 (251)
T ss_pred             HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHH
Confidence            9999999999999999874   5667889999999999998765

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.5e-19  Score=126.13  Aligned_cols=114  Identities=25%  Similarity=0.325  Sum_probs=99.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+++++||||+++||.+++++|+++|++|++++|++++.++...++...   .++.++.+|+++.+++.++++++.+.
T Consensus         3 ~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (237)
T PRK07326          3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA   79 (237)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999988777766666432   46888999999999999999999998


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++||++|...  +..+.+.+++++.+++|+.+++
T Consensus        80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (237)
T PRK07326         80 FGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAF  118 (237)
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHH
Confidence            999999999999763  3456788999999999998875

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.83  E-value=1.3e-19  Score=128.19  Aligned_cols=112  Identities=28%  Similarity=0.369  Sum_probs=94.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHH----CCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           26 TAIVTGASSGIGAETTRVLAL----RGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~----~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++|||+++|||+++|++|++    +|++|++++|+.+.+++...++....++.++.++.+|+++.++++++++++.+.+
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            689999999999999999997    7999999999998888888777654445678899999999999999999998877


Q ss_pred             CCc----cEEEECcccCCC---CC-c-cCHHHHHHHhhhcccccc
Q 042455          102 LPL----NILINKAGICGT---PF-M-LSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~i----d~lv~~ag~~~~---~~-~-~~~~~~~~~~~~n~~g~~  137 (138)
                      +++    |+||||||....   .. + .+.++|+++|++|+.|++
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~  126 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSML  126 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHH
Confidence            653    699999997532   12 2 357899999999999876

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.83  E-value=1.8e-19  Score=126.38  Aligned_cols=115  Identities=25%  Similarity=0.291  Sum_probs=100.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.+|+++||||+++||.++++.|+++|++|++++|+.++..+....+...  +.++.++.+|++|.++++++++++..+
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVED   80 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999987777766666544  456889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++||++|...  +..+.+.++|.+.+++|+.+++
T Consensus        81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  119 (251)
T PRK12826         81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTF  119 (251)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999764  3346788999999999998764

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.7e-19  Score=127.01  Aligned_cols=115  Identities=30%  Similarity=0.379  Sum_probs=95.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++++++|||++++||.++|+.|+++|++|+++ .|+.+..++....+...  +.++.++++|++|.+++.++++++.+
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~   80 (254)
T PRK12746          3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLKN   80 (254)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHHH
Confidence            3678999999999999999999999999998774 67776666666555433  45688899999999999999999887


Q ss_pred             cC------CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RA------LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~------~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++      +++|++|||+|...  +..+.+.+.|+..+++|+.+++
T Consensus        81 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  126 (254)
T PRK12746         81 ELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPF  126 (254)
T ss_pred             HhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            76      57999999999763  3446788999999999998865

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.83  E-value=2.1e-19  Score=126.20  Aligned_cols=112  Identities=29%  Similarity=0.343  Sum_probs=94.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|+++||||+++||.++++.|+++|++|+++. |+.+..+....++...  +.++.++.+|+++.++++++++++.+.++
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAA--GGRACVVAGDVANEADVIAMFDAVQSAFG   79 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999988765 5656666665555443  45788999999999999999999998899


Q ss_pred             CccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++|||||...   +..+.+.++|..++++|+.+++
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (248)
T PRK06947         80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAY  117 (248)
T ss_pred             CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHH
Confidence            9999999999763   2346788999999999999875

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.2e-19  Score=129.74  Aligned_cols=107  Identities=21%  Similarity=0.291  Sum_probs=91.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC-
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA-  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-  101 (138)
                      .+|+++||||++|||+++++.|+++|++|++++|+.+.++++.    .    ..+.++.+|++|.++++++++++.+.+ 
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~----~----~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   74 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE----A----EGLEAFQLDYAEPESIAALVAQVLELSG   74 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----H----CCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999977655432    1    136788999999999999999987765 


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||||...  +..+.+.++|+.++++|+.|++
T Consensus        75 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  112 (277)
T PRK05993         75 GRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWH  112 (277)
T ss_pred             CCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHH
Confidence            68999999999763  4456889999999999998864

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.9e-19  Score=127.12  Aligned_cols=110  Identities=25%  Similarity=0.305  Sum_probs=93.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .|++|+++||||+++||.++++.|+++|++|++++|+....++...++     .  ..++++|++++++++++++++.+.
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~~~~~~~~~~~~   76 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-----G--GLFVPTDVTDEDAVNALFDTAAET   76 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc-----C--CcEEEeeCCCHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999876655544433     1  247799999999999999999988


Q ss_pred             CCCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...    +..+.+.+.|++.+++|+.|++
T Consensus        77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (255)
T PRK06057         77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVY  117 (255)
T ss_pred             cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHH
Confidence            899999999999753    2335788999999999998875

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.82  E-value=2.7e-20  Score=134.56  Aligned_cols=120  Identities=14%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             cCCCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHH--------hcCCCC-----eeEEEEe
Q 042455           18 QGIDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV--------MQNPAA-----KVDVMEL   82 (138)
Q Consensus        18 ~~~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~--------~~~~~~-----~~~~~~~   82 (138)
                      +.+++++|+++|||++  +|||+++|+.|+++|++|++.++.+ .++...+.+.        ....+.     ++..+.+
T Consensus         2 ~~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (299)
T PRK06300          2 LKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA   80 (299)
T ss_pred             CCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence            3456899999999996  9999999999999999999977541 0100000000        000011     1111223


Q ss_pred             cCCCH------------------HHHHHHHHHHHhcCCCccEEEECcccC----CCCCccCHHHHHHHhhhccccccC
Q 042455           83 DLSSL------------------ASVRKFASDFTARALPLNILINKAGIC----GTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        83 D~~~~------------------~~~~~~~~~~~~~~~~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      |+++.                  ++++++++++.+++|++|+||||||..    .+..+.+.++|++++++|+.|+|+
T Consensus        81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~  158 (299)
T PRK06300         81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVS  158 (299)
T ss_pred             hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHH
Confidence            33322                  468999999999999999999999864    345578999999999999998863

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=2.2e-19  Score=125.68  Aligned_cols=115  Identities=28%  Similarity=0.388  Sum_probs=99.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++|||++++||.++++.|+++|++|+++ +|+.+..+.....+...  +.++.++.+|+++.+++.++++++.+
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVE   79 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999998 89887776666666543  45688999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|+++|...  +..+.+.++|++.+++|+.+++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  119 (247)
T PRK05565         80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVM  119 (247)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            8999999999999863  3346788999999999998864

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=2.6e-19  Score=126.16  Aligned_cols=112  Identities=23%  Similarity=0.292  Sum_probs=94.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +|+++|||++++||.+++++|+++|++|++++|+.. ..++....+...  +.++.++.+|+++++++.++++++.+.++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL--GVEVIFFPADVADLSAHEAMLDAAQAAWG   79 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999998643 344444444433  45688999999999999999999999999


Q ss_pred             CccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++|||+|...    +..+.+.++|++.+++|+.+++
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (256)
T PRK12745         80 RIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPF  118 (256)
T ss_pred             CCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHH
Confidence            9999999999753    2446788999999999999875

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.6e-19  Score=129.06  Aligned_cols=105  Identities=26%  Similarity=0.325  Sum_probs=89.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||+ +|||+++|++|+ +|++|++++|+.+.+++..+++...  +.++.++++|++|++++.++++++ +++++
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~   76 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATA-QTLGP   76 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHH-HhcCC
Confidence            689999998 699999999996 8999999999987777766666543  457889999999999999999988 56899


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhccccccC
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||||||+..     ..++|++++++|+.|+++
T Consensus        77 id~li~nAG~~~-----~~~~~~~~~~vN~~g~~~  106 (275)
T PRK06940         77 VTGLVHTAGVSP-----SQASPEAILKVDLYGTAL  106 (275)
T ss_pred             CCEEEECCCcCC-----chhhHHHHHHHhhHHHHH
Confidence            999999999742     246789999999998763

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.2e-19  Score=126.99  Aligned_cols=113  Identities=17%  Similarity=0.134  Sum_probs=93.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+|+++||||++|||+++|++|+++| ++|++++|++++ +++..+++.... ..++.++++|++|.+++.++++++.+ 
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~-   84 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA-   84 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh-
Confidence            47899999999999999999999995 899999999886 777777776542 34688999999999999999999876 


Q ss_pred             CCCccEEEECcccCCCCC--ccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTPF--MLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~--~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+++|++|||+|...+..  ..+.++..+++++|+.+++
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~  123 (253)
T PRK07904         85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAV  123 (253)
T ss_pred             cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHH
Confidence            489999999999865322  2244556678999999875

>PRK09135 pteridine reductase; Provisional

Probab=99.82  E-value=3.6e-19  Score=124.70  Aligned_cols=115  Identities=19%  Similarity=0.228  Sum_probs=95.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +.+++++|||++++||+.++++|+++|++|++++|+.+ ..+.....+.... ...+.++.+|+++.+++.++++++.+.
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999998643 3444444444332 345888999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|...  +..+.+.+++++.+++|+.|++
T Consensus        83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  121 (249)
T PRK09135         83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPF  121 (249)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHH
Confidence            999999999999764  3345678899999999998875

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.82  E-value=3.3e-19  Score=124.52  Aligned_cols=115  Identities=30%  Similarity=0.395  Sum_probs=99.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +|.+|+++|||++++||..+++.|+++|++|++++|++++.+.....+...  +.++.++.+|+++.+++.++++++...
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA--GGEARVLVFDVSDEAAVRALIEAAVEA   79 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            466789999999999999999999999999999999988777666666544  567889999999999999999999888


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|+++|...  +..+.+.++|.+.++.|+.+++
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (246)
T PRK05653         80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTF  118 (246)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            899999999999764  3446788899999999988764

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.1e-19  Score=128.23  Aligned_cols=109  Identities=29%  Similarity=0.333  Sum_probs=93.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .|++|||||+++||.+++++|+++|++|++++|+.+..+++....     +.++.++++|++|.++++++++++.+.+++
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAALGR   76 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999876655544332     346888999999999999999999888899


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+||||||...  +..+.+.++|++.+++|+.+++
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  112 (276)
T PRK06482         77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSI  112 (276)
T ss_pred             CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHH
Confidence            999999999863  3446788899999999998875

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.7e-19  Score=128.55  Aligned_cols=105  Identities=24%  Similarity=0.337  Sum_probs=90.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||++|||.+++++|+++|++|++++|+.+..+...    .    ..+.++.+|+++.++++++++++.+.++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   73 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA----A----AGFTAVQLDVNDGAALARLAEELEAEHGGL   73 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            78999999999999999999999999999999876554322    1    125678999999999999999999999999


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|||||...  +..+.+.++|++.+++|+.|++
T Consensus        74 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  108 (274)
T PRK05693         74 DVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVV  108 (274)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999763  4557789999999999999875

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.82  E-value=2.6e-19  Score=126.02  Aligned_cols=107  Identities=24%  Similarity=0.377  Sum_probs=93.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++|||++++||.++++.|+++|++|++++|+++.+++....+     +.++.++.+|+++.++++++++++.+.++++|
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   76 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNID   76 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            6899999999999999999999999999999987766554433     34688899999999999999999999899999


Q ss_pred             EEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|||+|...   +..+.+.++|++++++|+.|++
T Consensus        77 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  111 (248)
T PRK10538         77 VLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLV  111 (248)
T ss_pred             EEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999752   3456789999999999998865

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.82  E-value=3.2e-19  Score=125.34  Aligned_cols=116  Identities=22%  Similarity=0.232  Sum_probs=99.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC--CHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS--SLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~   98 (138)
                      .+++|+++|||++++||.+++++|++.|++|++++|+.+..++...++.... ..++.++.+|++  +++++.++++.+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999888777777765542 345677788886  7899999999999


Q ss_pred             hcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|++|||||...   +..+.+.+.|++.+++|+.|++
T Consensus        88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~  129 (247)
T PRK08945         88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATF  129 (247)
T ss_pred             HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHH
Confidence            99999999999999763   3456788999999999998865

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.82  E-value=3.7e-19  Score=123.86  Aligned_cols=114  Identities=21%  Similarity=0.232  Sum_probs=97.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +.+++|+++|||++++||.+++++|+++|++|++++|+.++..+...++..    ..+..+.+|++|.++++++++++.+
T Consensus         3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~   78 (239)
T PRK12828          3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----DALRIGGIDLVDPQAARRAVDEVNR   78 (239)
T ss_pred             CCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----cCceEEEeecCCHHHHHHHHHHHHH
Confidence            357799999999999999999999999999999999998776666555543    2356778999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++|+++|...  +..+.+.++|.+.+++|+.+++
T Consensus        79 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (239)
T PRK12828         79 QFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTL  118 (239)
T ss_pred             HhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHH
Confidence            9999999999999763  2345688899999999988764

>PRK07069 short chain dehydrogenase; Validated

Probab=99.82  E-value=3.1e-19  Score=125.32  Aligned_cols=111  Identities=23%  Similarity=0.254  Sum_probs=93.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||++++||.++++.|+++|++|++++|+ .+.+++...++........+..+++|+++.++++++++++.++++++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            7999999999999999999999999999998 556666665554443233466789999999999999999999999999


Q ss_pred             EEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|||+|...  +..+.+.++|.+++++|+.+++
T Consensus        82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  115 (251)
T PRK07069         82 VLVNNAGVGSFGAIEQIELDEWRRVMAINVESIF  115 (251)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999763  3456788999999999998764

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.82  E-value=3e-19  Score=125.54  Aligned_cols=107  Identities=33%  Similarity=0.446  Sum_probs=93.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++.+|+++|||++++||.+++++|+++|++|++++|+.         +...  +.++.++++|+++.++++++++++.+
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   72 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQE--DYPFATFVLDVSDAAAVAQVCQRLLA   72 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            568899999999999999999999999999999999975         1111  45688899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|++|||+|...  +..+.+.++|.+.+++|+.+++
T Consensus        73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  112 (252)
T PRK08220         73 ETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAF  112 (252)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999763  4456788999999999998865

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.82  E-value=3.4e-19  Score=126.20  Aligned_cols=112  Identities=29%  Similarity=0.327  Sum_probs=97.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++++|||++++||.++++.|+++|++|++++|+++..++..+++...  +.++.++.+|++|.+++.++++++.+++++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH--GGEALVVPTDVSDAEACERLIEAAVARFGG   78 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999999999999999999999987777776666554  457888999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCcc-CHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFML-SKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~-~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||+|...  +..+. +.++|.+.+++|+.+++
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~  115 (263)
T PRK06181         79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAV  115 (263)
T ss_pred             CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHH
Confidence            999999999764  23355 88899999999998875

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=8.2e-19  Score=123.28  Aligned_cols=116  Identities=19%  Similarity=0.206  Sum_probs=95.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +++.+++++||||+++||.+++++|+++|++|++..|+ .+........+...  +.++..+.+|+++.+++.++++++.
T Consensus         2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   79 (252)
T PRK06077          2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN--GGEGIGVLADVSTREGCETLAKATI   79 (252)
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc--CCeeEEEEeccCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999998887754 33444444444433  4567889999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|++|||+|...  +..+.+.+.|++.+++|+.+++
T Consensus        80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  120 (252)
T PRK06077         80 DRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVI  120 (252)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHH
Confidence            99999999999999753  3446788889999999998764

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.81  E-value=6.5e-19  Score=123.42  Aligned_cols=115  Identities=26%  Similarity=0.284  Sum_probs=95.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC----cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN----MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~----~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ++.+++++||||+++||+++|+.|+++|++|++++|.    .+..++...++...  +.++.++.+|+++.+++++++++
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            3567899999999999999999999999999887653    33344444444433  45788999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+.++++|++|||+|...  +..+.+.++|.+.+++|+.+++
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFF  123 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHH
Confidence            9988899999999999864  3456788999999999998875

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.81  E-value=8.1e-19  Score=122.87  Aligned_cols=111  Identities=32%  Similarity=0.400  Sum_probs=94.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      |+++||||+++||.+++++|+++|++|+++ .|+.+..++...++...  +.++..+++|++|+++++++++++.+++++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADISDENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC--CCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            689999999999999999999999998764 67766666666666544  456888999999999999999999989999


Q ss_pred             ccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||+|...   +..+.+.++|+..+++|+.+++
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (247)
T PRK09730         80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYF  116 (247)
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHH
Confidence            999999999753   3446788999999999999875

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.81  E-value=4.7e-19  Score=139.58  Aligned_cols=115  Identities=28%  Similarity=0.289  Sum_probs=99.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||++++++|+++|++|++++|+++.+++...++...  +.++.++.+|++|.++++++++++.++
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~  445 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAAVDHTVKDILAE  445 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999988888777777554  467889999999999999999999999


Q ss_pred             CCCccEEEECcccCCC--CCc--cCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGT--PFM--LSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~--~~~--~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||||....  ..+  ...++|++++++|+.|++
T Consensus       446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  486 (657)
T PRK07201        446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAV  486 (657)
T ss_pred             cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999997532  112  235789999999998875

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.81  E-value=1.3e-18  Score=121.55  Aligned_cols=115  Identities=28%  Similarity=0.356  Sum_probs=96.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++|||++++||++++++|+++|++|+++.|+... .+.....+...  +.++.++.+|+++.+++.++++++.+
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999888876553 44444444433  46788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++||++|...  +..+.+.+.+.+.+.+|+.+++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  119 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVF  119 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            8999999999999764  3346788999999999998764

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1e-18  Score=123.58  Aligned_cols=114  Identities=29%  Similarity=0.355  Sum_probs=97.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++||||+++||..++++|+++|++|++++|+.+..++......    ..++..+.+|+++++++..+++++.+
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP----GAKVTATVADVADPAQVERVFDTAVE   82 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCceEEEEccCCCHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999998776655444332    23578899999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|+|||++|...   +....+.++|.+++++|+.+++
T Consensus        83 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  123 (264)
T PRK12829         83 RFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQF  123 (264)
T ss_pred             HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            8999999999999762   2346788999999999998865

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.1e-18  Score=123.09  Aligned_cols=110  Identities=26%  Similarity=0.274  Sum_probs=95.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||++++||.++++.|+++|++|++++|+.+..+.....+.    +.++.++.+|+++.+++..+++++.+++++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG----DARFVPVACDLTDAASLAAALANAAAERGP   77 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5799999999999999999999999999999999877766655552    456888999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|+|+|...  +..+.+.++|.+.+.+|+.+++
T Consensus        78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  113 (257)
T PRK07074         78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAY  113 (257)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999864  3346788999999999998765

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.80  E-value=7.2e-19  Score=125.00  Aligned_cols=112  Identities=19%  Similarity=0.228  Sum_probs=86.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHH----HHHHHHHHh
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASV----RKFASDFTA   99 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~   99 (138)
                      ++++||||++|||+++++.|+++|++|++++|. ++.+++..+++.... +.++..+.+|++|.+++    +++++++.+
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARR-PNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhcc-CCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            579999999999999999999999999988654 556666666664332 34577789999999865    566666677


Q ss_pred             cCCCccEEEECcccCC--CCCccCH-----------HHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSK-----------DNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~-----------~~~~~~~~~n~~g~~  137 (138)
                      .++++|+||||||...  +..+.+.           ++|.+++++|+.++|
T Consensus        81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~  131 (267)
T TIGR02685        81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPY  131 (267)
T ss_pred             ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHH
Confidence            8899999999999753  2222222           358999999998876

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.80  E-value=1e-18  Score=122.04  Aligned_cols=109  Identities=24%  Similarity=0.296  Sum_probs=92.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||++++||+++|+.|+++|++|++++|. .+..+....++...  +.++.++.+|+++.++++++++++.+.++++|
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~   78 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQ--GGNARLLQFDVADRVACRTLLEADIAEHGAYY   78 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            5899999999999999999999999888865 34455555666544  45788999999999999999999999999999


Q ss_pred             EEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+|+|...  +..+.+.++|+.++++|+.+++
T Consensus        79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  112 (239)
T TIGR01831        79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFY  112 (239)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            9999999864  3346788999999999998875

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.80  E-value=2.2e-18  Score=120.38  Aligned_cols=111  Identities=25%  Similarity=0.254  Sum_probs=93.0

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      |+++|||++++||.+++++|+++|++|+++.| +.+..++...++...  +.++.++.+|++++++++++++++.+.+++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGAL--GFDFRVVEGDVSSFESCKAAVAKVEAELGP   78 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999888 554455444444332  457889999999999999999999999999


Q ss_pred             ccEEEECcccCCC--CCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGT--PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||+|...+  ..+.+.++|++.+.+|+.+++
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  114 (242)
T TIGR01829        79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVF  114 (242)
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999997642  346788999999999988764

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.80  E-value=1.8e-18  Score=121.00  Aligned_cols=112  Identities=26%  Similarity=0.290  Sum_probs=92.9

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|+++|||++++||+++|+.|+++|++|++++|+.+. .++....+..  .+.++.++.+|+++.+++.++++++.++++
T Consensus         2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   79 (245)
T PRK12824          2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEECAEALAEIEEEEG   79 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999998542 2222222221  145688999999999999999999999999


Q ss_pred             CccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  116 (245)
T PRK12824         80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVF  116 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH
Confidence            9999999999863  3457789999999999998865

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=1.3e-19  Score=119.36  Aligned_cols=110  Identities=28%  Similarity=0.346  Sum_probs=94.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++.|+.+++||+.-|||+++++.|++.|+.|+.+.|+++.+..+.++    . ...+..++.|+++++.+.+.+..   
T Consensus         3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e----~-p~~I~Pi~~Dls~wea~~~~l~~---   74 (245)
T KOG1207|consen    3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE----T-PSLIIPIVGDLSAWEALFKLLVP---   74 (245)
T ss_pred             ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh----C-CcceeeeEecccHHHHHHHhhcc---
Confidence            357899999999999999999999999999999999999887776654    2 34488999999998777666554   


Q ss_pred             cCCCccEEEECcccC--CCCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                       .+++|.+|||||+.  +|+.+.+.+.|++.|++|+.++++
T Consensus        75 -v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~  114 (245)
T KOG1207|consen   75 -VFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVIL  114 (245)
T ss_pred             -cCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeee
Confidence             47999999999986  688899999999999999998764

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.79  E-value=2.8e-18  Score=120.63  Aligned_cols=112  Identities=27%  Similarity=0.295  Sum_probs=96.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|++||||++++||.+++++|+++|++|++++|+.+..+.+...+...  +.++.++.+|+++.++++++++++.+.+++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999999999987777666665443  457889999999999999999999988899


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|+++|...  +..+.+.+++++++++|+.|++
T Consensus        79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~  114 (255)
T TIGR01963        79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAF  114 (255)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999764  2345678889999999988754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.79  E-value=6.7e-19  Score=125.04  Aligned_cols=113  Identities=26%  Similarity=0.326  Sum_probs=93.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|++++||||++|||++.|++|+++|.+|++++|++++++...+++.+.++ .++..+.+|+++.+.+-.-+.+.... .
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~~-~  125 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLAG-L  125 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhcC-C
Confidence            469999999999999999999999999999999999999999999998885 89999999999877733333332222 4


Q ss_pred             CccEEEECcccCC--C--CCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG--T--PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~--~--~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .|-+||||+|...  |  +.+.+...+...+.+|+++++
T Consensus       126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~  164 (312)
T KOG1014|consen  126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVT  164 (312)
T ss_pred             ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHH
Confidence            7899999999875  3  225566688999999998864

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.78  E-value=3.6e-18  Score=119.70  Aligned_cols=109  Identities=23%  Similarity=0.276  Sum_probs=93.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||+++||+++++.|+++|++|++++|+++..+....++.... +.++.++++|++++++++++++++.+   ++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~   77 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPA---LP   77 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhh---cC
Confidence            689999999999999999999999999999999887777666665442 46789999999999999999998765   46


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|+|+|...  +..+.+.+++.+.+++|+.+++
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  112 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPI  112 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHH
Confidence            99999999764  3346788999999999998865

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.78  E-value=2e-18  Score=119.61  Aligned_cols=116  Identities=28%  Similarity=0.384  Sum_probs=102.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-----EEEEEecCcchhHHHHHHHHhcCC--CCeeEEEEecCCCHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-----HVIMADRNMAAGRDVKVAIVMQNP--AAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-----~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      ..|+++|||+++|||+++|++|++...     .+++++|+-+++++....+++-+|  ..++.++++|+++..++.++..
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            468999999999999999999998632     578889999999999999999988  5678889999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC-----------------------CC------CccCHHHHHHHhhhccccccC
Q 042455           96 DFTARALPLNILINKAGICG-----------------------TP------FMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~-----------------------~~------~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++.++|.++|.++.|||.+.                       |.      ...+.|++..+|++|++|+|+
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfy  153 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFY  153 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhh
Confidence            99999999999999999851                       11      125778899999999999984

>PRK08324 short chain dehydrogenase; Validated

Probab=99.78  E-value=3.6e-18  Score=135.31  Aligned_cols=114  Identities=26%  Similarity=0.311  Sum_probs=100.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+|+++||||+++||+++++.|+++|++|++++|+.+..+.....+...   ..+.++.+|+++.++++++++++.+.
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~  495 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA  495 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988777666655332   36889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|++|||||...  +..+.+.++|++.+++|+.|++
T Consensus       496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~  534 (681)
T PRK08324        496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHF  534 (681)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999763  4457899999999999998865

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.78  E-value=7.3e-18  Score=117.80  Aligned_cols=115  Identities=24%  Similarity=0.330  Sum_probs=93.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+.+|+++||||+++||.+++++|+++|++|+++.|+... .+.....+...  +.++.++.+|+++.+++.++++++.+
T Consensus         3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~   80 (249)
T PRK12825          3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAVE   80 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHHH
Confidence            3556899999999999999999999999998786666544 33344444433  45688999999999999999999988


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|++||++|...  +..+.+.++|.+.+++|+.+++
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  120 (249)
T PRK12825         81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVF  120 (249)
T ss_pred             HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            8899999999999763  2346788999999999988764

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.8e-18  Score=121.90  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=81.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ...+++|+++||||++|||+++++.|+++|++|++++|+.....+  . . ..  .. ...+.+|+++.+++++      
T Consensus         9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~--~-~-~~--~~-~~~~~~D~~~~~~~~~------   75 (245)
T PRK12367          9 QSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE--S-N-DE--SP-NEWIKWECGKEESLDK------   75 (245)
T ss_pred             HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh--h-h-cc--CC-CeEEEeeCCCHHHHHH------
Confidence            345789999999999999999999999999999999998632111  1 1 11  11 2567899999987753      


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       .++++|++|||||... ..+.+.++|++.+++|+.|++
T Consensus        76 -~~~~iDilVnnAG~~~-~~~~~~~~~~~~~~vN~~g~~  112 (245)
T PRK12367         76 -QLASLDVLILNHGINP-GGRQDPENINKALEINALSSW  112 (245)
T ss_pred             -hcCCCCEEEECCccCC-cCCCCHHHHHHHHHHHhHHHH
Confidence             3468999999999743 345688999999999999876

>PRK12742 oxidoreductase; Provisional

Probab=99.78  E-value=4.2e-18  Score=118.74  Aligned_cols=106  Identities=24%  Similarity=0.329  Sum_probs=84.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+++|+++||||+++||+++++.|+++|++|+++++. .+..+++..++     +  +.++.+|++|.+++.+++++   
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-----~--~~~~~~D~~~~~~~~~~~~~---   72 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-----G--ATAVQTDSADRDAVIDVVRK---   72 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-----C--CeEEecCCCCHHHHHHHHHH---
Confidence            4678999999999999999999999999999888764 34444333222     2  45678999999988877753   


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++++|++|||+|...  +..+.+.++|++.+++|+.+++
T Consensus        73 -~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  111 (237)
T PRK12742         73 -SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPY  111 (237)
T ss_pred             -hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHH
Confidence             578999999999763  4456789999999999998875

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.78  E-value=6.7e-18  Score=117.80  Aligned_cols=114  Identities=16%  Similarity=0.142  Sum_probs=94.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.+|+++|||++++||.++++.|+++|++|++++|+++..+.+...+...   ..+.++.+|++++++++++++++...
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   78 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV   78 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999987776655554332   35788999999999999999998888


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|.+|+++|..........+++++++++|+.+++
T Consensus        79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~  115 (238)
T PRK05786         79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPL  115 (238)
T ss_pred             hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHH
Confidence            8999999999997532222344889999999988764

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.78  E-value=2.7e-18  Score=116.02  Aligned_cols=110  Identities=23%  Similarity=0.330  Sum_probs=84.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc---chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV-HVIMADRNM---AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++||||+.++||..++++|+++|. +|++++|+.   ....+...+++..  +.++.++++|++|++++.++++++.+++
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~~~~~~   79 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA--GARVEYVQCDVTDPEAVAAALAQLRQRF   79 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT--T-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC--CCceeeeccCccCHHHHHHHHHHHHhcc
Confidence            799999999999999999999986 899999983   2345567777776  7899999999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+++||+||...  +..+.++++++.++...+.|.+
T Consensus        80 ~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~  117 (181)
T PF08659_consen   80 GPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLW  117 (181)
T ss_dssp             S-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHH
T ss_pred             CCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHH
Confidence            99999999999874  4557899999999998887654

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.77  E-value=4.8e-18  Score=119.29  Aligned_cols=111  Identities=27%  Similarity=0.280  Sum_probs=88.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++|||++++||+++++.|+++|++|++++|+.+ ..+....++...  +.++.++.+|+++++++.++++++.+
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTARE   80 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999754 344455555443  45678899999999999999999988


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|++|||+|.... ..   ..+...+++|+.+++
T Consensus        81 ~~~~~d~vi~~ag~~~~-~~---~~~~~~~~vn~~~~~  114 (248)
T PRK07806         81 EFGGLDALVLNASGGME-SG---MDEDYAMRLNRDAQR  114 (248)
T ss_pred             hCCCCcEEEECCCCCCC-CC---CCcceeeEeeeHHHH
Confidence            88999999999986421 11   124567778877664

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.77  E-value=6.4e-18  Score=120.23  Aligned_cols=113  Identities=21%  Similarity=0.292  Sum_probs=97.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ...+|.++|||+.+|+|..+|++|.++|+.|++.+-.++.++.+..+..    ..+...+++|++++++++++.+.+.+.
T Consensus        26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~~~  101 (322)
T KOG1610|consen   26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVKKH  101 (322)
T ss_pred             ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999988777777665543    456788899999999999999988875


Q ss_pred             C--CCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455          101 A--LPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~--~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .  ..+..||||||+.   ++..-.+.++|.+++++|++|++
T Consensus       102 l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~i  143 (322)
T KOG1610|consen  102 LGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTI  143 (322)
T ss_pred             cccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHH
Confidence            4  3599999999976   35556899999999999999975

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.77  E-value=5.6e-18  Score=118.73  Aligned_cols=104  Identities=23%  Similarity=0.312  Sum_probs=86.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++++||||++|||.+++++|+++|++|++++|+++.++++...      ..++.++++|+++.++++++++++..   .+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~---~~   72 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAALSQLPF---IP   72 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHHHHhccc---CC
Confidence            6899999999999999999999999999999987765554332      24578899999999999999988642   47


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|+|+|...  +..+.+.++|++++++|+.|++
T Consensus        73 d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  107 (240)
T PRK06101         73 ELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVA  107 (240)
T ss_pred             CEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999653  2335788999999999998875

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.77  E-value=7.3e-18  Score=117.99  Aligned_cols=109  Identities=32%  Similarity=0.413  Sum_probs=89.8

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .++++++|+++|||++++||..+++.|+++|++|++++|+.+..++.....       ...++.+|+++.+++.++++. 
T Consensus         3 ~~~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~-   74 (245)
T PRK07060          3 MAFDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-------GCEPLRLDVGDDAAIRAALAA-   74 (245)
T ss_pred             cccccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCeEEEecCCCHHHHHHHHHH-
Confidence            445688999999999999999999999999999999999877665544322       245788999999998888775 


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         .+++|++|||+|...  +..+.+.++|++.+.+|+.+++
T Consensus        75 ---~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  113 (245)
T PRK07060         75 ---AGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAA  113 (245)
T ss_pred             ---hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence               468999999999863  3346788999999999998875

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.76  E-value=1.3e-17  Score=126.62  Aligned_cols=112  Identities=29%  Similarity=0.402  Sum_probs=91.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+|+++|||++++||++++++|+++|++|+++++....  +...++.... +  ...+.+|+++.++++++++.+.++
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~--~~l~~~~~~~-~--~~~~~~Dv~~~~~~~~~~~~~~~~  281 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG--EALAAVANRV-G--GTALALDITAPDAPARIAEHLAER  281 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHHHHc-C--CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999885322  1122222221 2  346789999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|+..  ...+.+.++|+.++++|+.|++
T Consensus       282 ~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~  320 (450)
T PRK08261        282 HGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPL  320 (450)
T ss_pred             CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999874  3446789999999999999875

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.75  E-value=1.7e-17  Score=116.73  Aligned_cols=108  Identities=21%  Similarity=0.279  Sum_probs=87.6

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      |+++|||++++||++++++|+++|++|++++|++. ..++    +.... +.++.++.+|+++.++++++++++.+.++.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTK----LAEQY-NSNLTFHSLDLQDVHELETNFNEILSSIQE   76 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHH----HHhcc-CCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence            68999999999999999999999999999999863 2222    22211 456888999999999999999998776543


Q ss_pred             --c--cEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          104 --L--NILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 --i--d~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        +  .++|+|+|...   +..+.+.++|.+.+++|+.+++
T Consensus        77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (251)
T PRK06924         77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPM  117 (251)
T ss_pred             ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHH
Confidence              2  28999999753   3457899999999999999865

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.75  E-value=2.4e-17  Score=116.21  Aligned_cols=106  Identities=25%  Similarity=0.347  Sum_probs=87.9

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|||++++||.+++++|+++|++|++++|+.+..++........  +..+.++.+|++|.+++.+++.      ++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~------~~   73 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAE------WD   73 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhc------CC
Confidence            578999999999999999999999999999999877666655544433  3468889999999999877654      37


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+||||||...  +..+.+.+.|+..+++|+.+++
T Consensus        74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  109 (257)
T PRK09291         74 VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPL  109 (257)
T ss_pred             CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999763  4457889999999999998764

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.75  E-value=3.4e-17  Score=111.75  Aligned_cols=114  Identities=25%  Similarity=0.365  Sum_probs=91.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHC-CCEE-EEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALR-GVHV-IMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~-g~~v-~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |..|.++||||.+|||+.++++|++. |-.+ +.+.|+++++.+..+.....  ..+++.+++|+++.+++..+++++.+
T Consensus         1 Mspksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~--d~rvHii~Ldvt~deS~~~~~~~V~~   78 (249)
T KOG1611|consen    1 MSPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKS--DSRVHIIQLDVTCDESIDNFVQEVEK   78 (249)
T ss_pred             CCCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhcc--CCceEEEEEecccHHHHHHHHHHHHh
Confidence            34577999999999999999999975 5554 55677788764333333222  57899999999999999999999988


Q ss_pred             c--CCCccEEEECcccCCC---CCccCHHHHHHHhhhcccccc
Q 042455          100 R--ALPLNILINKAGICGT---PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~--~~~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      -  ...+|+||||||+..+   ..+.+.+.|.+.+++|..|++
T Consensus        79 iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~i  121 (249)
T KOG1611|consen   79 IVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPI  121 (249)
T ss_pred             hcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHH
Confidence            5  5679999999998743   345778889999999999875

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.74  E-value=8.4e-18  Score=117.90  Aligned_cols=104  Identities=34%  Similarity=0.455  Sum_probs=90.9

Q ss_pred             CCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC-CCccEE
Q 042455           31 GAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA-LPLNIL  107 (138)
Q Consensus        31 G~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~l  107 (138)
                      |++  +|||+++|+.|+++|++|++++|+.++.++..+++....+ .+  .+++|++++++++++++++.+.+ |+||+|
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l   77 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG-AE--VIQCDLSDEESVEALFDEAVERFGGRIDIL   77 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT-SE--EEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC-Cc--eEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence            556  9999999999999999999999999987777777776653 43  59999999999999999999999 999999


Q ss_pred             EECcccCCC------CCccCHHHHHHHhhhcccccc
Q 042455          108 INKAGICGT------PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       108 v~~ag~~~~------~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |||+|...+      ..+.+.++|++.+++|+++++
T Consensus        78 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (241)
T PF13561_consen   78 VNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPF  113 (241)
T ss_dssp             EEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHH
T ss_pred             EecccccccccCCCChHhCCHHHHHHHHHHHHHHHH
Confidence            999997642      346788999999999998875

...

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.74  E-value=1.3e-17  Score=116.29  Aligned_cols=100  Identities=27%  Similarity=0.365  Sum_probs=82.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++|||++++||.++++.|+++|++|++++|+....      .     ..++..+.+|++++      ++++.+.
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~-----~~~~~~~~~D~~~~------~~~~~~~   64 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------L-----SGNFHFLQLDLSDD------LEPLFDW   64 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------c-----CCcEEEEECChHHH------HHHHHHh
Confidence            47789999999999999999999999999999999975431      0     24578889999877      4445556


Q ss_pred             CCCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++|||+|..   .+..+.+.++|++++++|+.+++
T Consensus        65 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  104 (235)
T PRK06550         65 VPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTF  104 (235)
T ss_pred             hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            68999999999975   23456789999999999999875

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.74  E-value=2.1e-17  Score=114.88  Aligned_cols=103  Identities=26%  Similarity=0.323  Sum_probs=87.4

Q ss_pred             EEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 042455           28 IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNIL  107 (138)
Q Consensus        28 litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l  107 (138)
                      +|||++++||++++++|+++|++|++++|+.+..+.....+..   +.++.++.+|+++++++++++++    .+++|++
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~----~~~id~l   73 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAE----AGPFDHV   73 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHh----cCCCCEE
Confidence            5899999999999999999999999999998776665555531   45688899999999999998876    3789999


Q ss_pred             EECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          108 INKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       108 v~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |||+|...  +..+.+.++|++++++|+.+++
T Consensus        74 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  105 (230)
T PRK07041         74 VITAADTPGGPVRALPLAAAQAAMDSKFWGAY  105 (230)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHHHHHH
Confidence            99999864  3446788999999999998875

>PRK08264 short chain dehydrogenase; Validated

Probab=99.74  E-value=3.2e-17  Score=114.47  Aligned_cols=105  Identities=32%  Similarity=0.431  Sum_probs=88.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +++.+|+++||||+++||+++|+.|+++|+ +|++++|+.++.++       .  +..+.++.+|+++.+++.++++.  
T Consensus         2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~--~~~~~~~~~D~~~~~~~~~~~~~--   70 (238)
T PRK08264          2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------L--GPRVVPLQLDVTDPASVAAAAEA--   70 (238)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------c--CCceEEEEecCCCHHHHHHHHHh--
Confidence            457789999999999999999999999999 99999998765443       1  45688999999999999887765  


Q ss_pred             hcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        ++++|++||++|...   +..+.+.++|.+.+++|+.+++
T Consensus        71 --~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  110 (238)
T PRK08264         71 --ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPL  110 (238)
T ss_pred             --cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHH
Confidence              468999999999832   3456789999999999998764

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.74  E-value=4.1e-17  Score=113.62  Aligned_cols=109  Identities=28%  Similarity=0.394  Sum_probs=91.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||++++||..++++|+++|++|++++|+. +..+.....+...  +.++.++.+|++|+++++++++++.+.++++|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAY--GVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            58999999999999999999999999998875 3444444555443  45688999999999999999999998899999


Q ss_pred             EEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++||++|...  +..+.+.+++++.+++|+.+++
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  112 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVF  112 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999764  2346778899999999998764

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.74  E-value=2.5e-17  Score=114.52  Aligned_cols=103  Identities=16%  Similarity=0.168  Sum_probs=83.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||++|||+++++.|+++|++|++++|+.+++++...++       .+.++++|+++.++++++++++.+   ++|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~---~id   71 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-------DVDAIVCDNTDPASLEEARGLFPH---HLD   71 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-------cCcEEecCCCCHHHHHHHHHHHhh---cCc
Confidence            4899999999999999999999999999999887766544433       245788999999999999887653   699


Q ss_pred             EEEECcccCC----C---CCccCHHHHHHHhhhccccccC
Q 042455          106 ILINKAGICG----T---PFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       106 ~lv~~ag~~~----~---~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|||+|...    +   ....+.++|++++++|+.++++
T Consensus        72 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~  111 (223)
T PRK05884         72 TIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVL  111 (223)
T ss_pred             EEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHH
Confidence            9999998531    1   1111578999999999998763

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.74  E-value=3.2e-17  Score=122.63  Aligned_cols=105  Identities=21%  Similarity=0.228  Sum_probs=84.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +.+++|+++||||++|||+++++.|+++|++|++++|++++.++...   ..  ...+..+.+|++|.+++.+.+     
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~---~~--~~~v~~v~~Dvsd~~~v~~~l-----  243 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEIN---GE--DLPVKTLHWQVGQEAALAELL-----  243 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---hc--CCCeEEEEeeCCCHHHHHHHh-----
Confidence            35679999999999999999999999999999999998765443221   11  234677899999998876543     


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        +++|++|||||... ..+.+.+++++++++|+.|++
T Consensus       244 --~~IDiLInnAGi~~-~~~~s~e~~~~~~~vNv~g~i  278 (406)
T PRK07424        244 --EKVDILIINHGINV-HGERTPEAINKSYEVNTFSAW  278 (406)
T ss_pred             --CCCCEEEECCCcCC-CCCCCHHHHHHHHHHHHHHHH
Confidence              57999999999753 236788999999999999875

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.74  E-value=4.3e-17  Score=113.20  Aligned_cols=104  Identities=26%  Similarity=0.376  Sum_probs=87.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++|||++++||.+++++|+++|++|++++|+++..++.. .+      ..+.+..+|++|+++++++++.+..  +++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~------~~~~~~~~D~~d~~~~~~~~~~~~~--~~i   72 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ-AL------PGVHIEKLDMNDPASLDQLLQRLQG--QRF   72 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH-hc------cccceEEcCCCCHHHHHHHHHHhhc--CCC
Confidence            68999999999999999999999999999999987654421 11      2466788999999999999998754  479


Q ss_pred             cEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|+|+|...    +..+.+.+++.+.+.+|+.+++
T Consensus        73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  109 (225)
T PRK08177         73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPI  109 (225)
T ss_pred             CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHH
Confidence            99999999863    2446788999999999998865

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.74  E-value=4.5e-17  Score=108.03  Aligned_cols=111  Identities=26%  Similarity=0.339  Sum_probs=91.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHH---HHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDV---KVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~---~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      |+++|||++++||.+++++|+++|+ .|++++|+.+..+..   ...+...  +.++.++.+|++++++++++++++...
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRAALAAALAAIPAR   78 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999997 688888876554332   2333332  567888999999999999999999888


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|++||++|...  +..+.+.++|++.+++|+.+++
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  117 (180)
T smart00822       79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAW  117 (180)
T ss_pred             cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHH
Confidence            999999999999763  3456788999999999988764

It uses NADPH to reduce the keto group to a hydroxy group.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.73  E-value=2.8e-17  Score=116.88  Aligned_cols=114  Identities=22%  Similarity=0.244  Sum_probs=102.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +.++|||+++|||+++|.....+|++|-++.|+..++.++.+.+.....-..+.+..+|+.|.++++.++++++...+.+
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            78999999999999999999999999999999999999998888655423337789999999999999999999989999


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      |.+|+|||..-  -+.+.+.+.++..+++|+.|+++
T Consensus       114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~  149 (331)
T KOG1210|consen  114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVN  149 (331)
T ss_pred             ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHH
Confidence            99999999763  45689999999999999999864

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.73  E-value=5.4e-17  Score=113.76  Aligned_cols=105  Identities=27%  Similarity=0.325  Sum_probs=85.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH-HHhcC---
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD-FTARA---  101 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~---  101 (138)
                      +++|||++++||.+++++|+++|++|++++|+.+..  .    ... .+.++.++++|+++.+++++++++ +.+.+   
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~----~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   75 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L----AAA-AGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG   75 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h----hhc-cCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence            699999999999999999999999999999986541  1    111 145788999999999999998877 55433   


Q ss_pred             CCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|||+|...   +..+.+.++|++.+++|+.|++
T Consensus        76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  114 (243)
T PRK07023         76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPL  114 (243)
T ss_pred             CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHH
Confidence            47999999999763   3446788999999999999864

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.73  E-value=5.9e-17  Score=112.78  Aligned_cols=102  Identities=22%  Similarity=0.259  Sum_probs=86.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |.+|+++|||++++||++++++|+++|++|++++|+.+..          . .  ..++.+|+++.++++++++++.+.+
T Consensus         1 ~~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~----------~-~--~~~~~~D~~~~~~~~~~~~~~~~~~   67 (234)
T PRK07577          1 MSSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD----------F-P--GELFACDLADIEQTAATLAQINEIH   67 (234)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc----------c-C--ceEEEeeCCCHHHHHHHHHHHHHhC
Confidence            3578999999999999999999999999999999986530          1 1  1467899999999999999988776


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|++|||+|...  +..+.+.++|.+.+++|+.+++
T Consensus        68 -~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  104 (234)
T PRK07577         68 -PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAV  104 (234)
T ss_pred             -CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHH
Confidence             6899999999864  3345688999999999998865

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.73  E-value=4.8e-17  Score=141.04  Aligned_cols=112  Identities=20%  Similarity=0.215  Sum_probs=92.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcc------------------------------------------
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMA------------------------------------------   59 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~------------------------------------------   59 (138)
                      +++++|||||++|||.++|++|+++ |++|++++|+..                                          
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            5899999999999999999999998 699999999820                                          


Q ss_pred             -----hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhc
Q 042455           60 -----AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATN  132 (138)
Q Consensus        60 -----~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n  132 (138)
                           ........+...  +.++.++.||++|.++++++++++.++ ++||+||||||+..  ...+.+.++|+++|++|
T Consensus      2076 ~~~~~ei~~~la~l~~~--G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~n 2152 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAA--GASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDKTLEEFNAVYGTK 2152 (2582)
T ss_pred             cchhHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccCCHHHHHHHHHHH
Confidence                 001112222222  567899999999999999999999876 68999999999874  45578999999999999


Q ss_pred             ccccc
Q 042455          133 HLGAF  137 (138)
Q Consensus       133 ~~g~~  137 (138)
                      +.|++
T Consensus      2153 v~G~~ 2157 (2582)
T TIGR02813      2153 VDGLL 2157 (2582)
T ss_pred             HHHHH
Confidence            99875

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=99.72  E-value=1.9e-16  Score=108.31  Aligned_cols=113  Identities=11%  Similarity=0.089  Sum_probs=97.3

Q ss_pred             CCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..|+||++||+|-.  ++|++.||+.+.++|+++++++.++ +++....++.+..  .....++||+++.++++++++++
T Consensus         2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~--~s~~v~~cDV~~d~~i~~~f~~i   78 (259)
T COG0623           2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEEL--GSDLVLPCDVTNDESIDALFATI   78 (259)
T ss_pred             CccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhc--cCCeEEecCCCCHHHHHHHHHHH
Confidence            46899999999986  6999999999999999999999887 6666666666553  23578899999999999999999


Q ss_pred             HhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccc
Q 042455           98 TARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLG  135 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g  135 (138)
                      .+++|++|+|||+.|...      ...+++.|.|...+++..++
T Consensus        79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS  122 (259)
T COG0623          79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYS  122 (259)
T ss_pred             HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhh
Confidence            999999999999999862      45578999999999887765

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.71  E-value=1.5e-16  Score=110.20  Aligned_cols=103  Identities=28%  Similarity=0.392  Sum_probs=84.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++|||++++||.+++++|+++|++|++++|+.+..++..    ..    .+.++.+|+++.++++++++++..  +++
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~----~~----~~~~~~~D~~~~~~v~~~~~~~~~--~~~   71 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ----AL----GAEALALDVADPASVAGLAWKLDG--EAL   71 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH----hc----cceEEEecCCCHHHHHHHHHHhcC--CCC
Confidence            68999999999999999999999999999999876654432    11    245789999999999998877642  479


Q ss_pred             cEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|||+|...    +..+.+.++|++.+++|+.+++
T Consensus        72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  108 (222)
T PRK06953         72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPM  108 (222)
T ss_pred             CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHH
Confidence            99999999863    2335689999999999999875

>PRK08017 oxidoreductase; Provisional

Probab=99.70  E-value=2.3e-16  Score=111.15  Aligned_cols=106  Identities=30%  Similarity=0.350  Sum_probs=88.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC-C
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA-L  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~  102 (138)
                      .|+++|||++++||+++++.|+++|++|++++|+.++.+...    .    ..+..+.+|+++.+++..+++.+.... +
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~----~----~~~~~~~~D~~~~~~~~~~~~~i~~~~~~   73 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN----S----LGFTGILLDLDDPESVERAADEVIALTDN   73 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH----h----CCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence            378999999999999999999999999999999876654432    1    125678999999999999999887643 6


Q ss_pred             CccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++|+|+|...  +..+.+.+++++.+++|+.|++
T Consensus        74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  110 (256)
T PRK08017         74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTH  110 (256)
T ss_pred             CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHH
Confidence            8999999999753  3446788999999999998764

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.67  E-value=3.4e-16  Score=106.79  Aligned_cols=88  Identities=22%  Similarity=0.346  Sum_probs=76.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++|||+++|||+++++.|+++ ++|++++|+..                   .+++|+++.+++++++++    ++++|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~----~~~id   57 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEK----VGKVD   57 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHh----cCCCC
Confidence            6899999999999999999999 99999998742                   358999999999998875    47899


Q ss_pred             EEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|||+|...  +..+.+.++|.+.+++|+.+++
T Consensus        58 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~   91 (199)
T PRK07578         58 AVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQV   91 (199)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHH
Confidence            9999999753  3446789999999999998875

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.66  E-value=9.8e-16  Score=106.82  Aligned_cols=99  Identities=23%  Similarity=0.285  Sum_probs=78.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++++|||+++|||+++|++|+++|  +.|++..|+....          ....++.++++|+++.++++++.    ++++
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~~Dls~~~~~~~~~----~~~~   66 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----------FQHDNVQWHALDVTDEAEIKQLS----EQFT   66 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----------cccCceEEEEecCCCHHHHHHHH----HhcC
Confidence            469999999999999999999985  5676667754321          11356788999999999988854    4457


Q ss_pred             CccEEEECcccCCC--------CCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGT--------PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~--------~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++|||+|....        ..+.+.+.|.+.+++|+.+++
T Consensus        67 ~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~  109 (235)
T PRK09009         67 QLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSL  109 (235)
T ss_pred             CCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHH
Confidence            89999999998631        235688899999999998875

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.66  E-value=1.3e-15  Score=105.42  Aligned_cols=103  Identities=21%  Similarity=0.311  Sum_probs=83.9

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++||||+++||+++++.|+++ ++|++++|+.+..++.....      ..+.++.+|++|.+++.++++++    ++
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~----~~   71 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL------PGATPFPVDLTDPEAIAAAVEQL----GR   71 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh------ccceEEecCCCCHHHHHHHHHhc----CC
Confidence            578999999999999999999999 99999999876654443222      23678899999999998887754    57


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++||++|...  +..+.+.++|.+.+++|+.+++
T Consensus        72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  107 (227)
T PRK08219         72 LDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPA  107 (227)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999864  3346788999999999988753

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.62  E-value=7.2e-15  Score=108.42  Aligned_cols=90  Identities=12%  Similarity=0.025  Sum_probs=72.8

Q ss_pred             CCCCEEEEeCCCCchHHH--HHHHHHHCCCEEEEEecCcchhH------------HHHHHHHhcCCCCeeEEEEecCCCH
Q 042455           22 AAGVTAIVTGASSGIGAE--TTRVLALRGVHVIMADRNMAAGR------------DVKVAIVMQNPAAKVDVMELDLSSL   87 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~--~a~~l~~~g~~v~~~~r~~~~~~------------~~~~~l~~~~~~~~~~~~~~D~~~~   87 (138)
                      .-+|++||||+++|||.+  +|+.| .+|++++++++..+..+            .....+...  +..+..+.||+++.
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~--G~~a~~i~~DVss~  115 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA--GLYAKSINGDAFSD  115 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc--CCceEEEEcCCCCH
Confidence            457999999999999999  89999 99999888875432211            122222222  45678899999999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           88 ASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      ++++++++++.+++|+||+||||+|..
T Consensus       116 E~v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        116 EIKQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCccC
Confidence            999999999999999999999999976

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.61  E-value=7.6e-15  Score=111.63  Aligned_cols=110  Identities=20%  Similarity=0.198  Sum_probs=95.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+.||+++||||+|+||.++|+++++.+. ++++.++++.+...+..++...++..++.++-+|+.|.+.++.++++.  
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~--  324 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH--  324 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC--
Confidence            36899999999999999999999999987 799999999999999999998887788999999999999999998874  


Q ss_pred             cCCCccEEEECcccCC-CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG-TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                         ++|+++|.|+.-+ |.-+..   ..+.+.+|+.|+.|
T Consensus       325 ---kvd~VfHAAA~KHVPl~E~n---P~Eai~tNV~GT~n  358 (588)
T COG1086         325 ---KVDIVFHAAALKHVPLVEYN---PEEAIKTNVLGTEN  358 (588)
T ss_pred             ---CCceEEEhhhhccCcchhcC---HHHHHHHhhHhHHH
Confidence               6999999999865 333444   45689999998753

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.60  E-value=7.4e-15  Score=107.06  Aligned_cols=106  Identities=16%  Similarity=0.185  Sum_probs=80.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++|++|||||+|+||.++++.|+++|++|+++.|+.+..+.....+.......++.++.+|+++.++++++++       
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-------   76 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID-------   76 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc-------
Confidence            3789999999999999999999999999999988876544432222111112468889999999999888775       


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|++||+||....  ..+.+.+.+.+++|+.|++
T Consensus        77 ~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~g~~  109 (325)
T PLN02989         77 GCETVFHTASPVAI--TVKTDPQVELINPAVNGTI  109 (325)
T ss_pred             CCCEEEEeCCCCCC--CCCCChHHHHHHHHHHHHH
Confidence            47999999996432  2334557788888888764

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.58  E-value=1.8e-14  Score=106.15  Aligned_cols=106  Identities=21%  Similarity=0.141  Sum_probs=82.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++||++|||||+|+||.++++.|+++|++|++++|+..........+..   ..++.++.+|+++.+++.+++++.    
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~----   74 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL---AKKIEDHFGDIRDAAKLRKAIAEF----   74 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh---cCCceEEEccCCCHHHHHHHHhhc----
Confidence            4578999999999999999999999999999999987654433322221   235677899999999999988864    


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|++||+||...  ...+.+++...+++|+.+++
T Consensus        75 -~~d~vih~A~~~~--~~~~~~~~~~~~~~N~~g~~  107 (349)
T TIGR02622        75 -KPEIVFHLAAQPL--VRKSYADPLETFETNVMGTV  107 (349)
T ss_pred             -CCCEEEECCcccc--cccchhCHHHHHHHhHHHHH
Confidence             5899999999532  23445566778889987764

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.56  E-value=4.9e-14  Score=108.65  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=78.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhc-----C--CCCeeEEEEecCCCHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQ-----N--PAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~-----~--~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      .+.+|+++||||+|+||++++++|+++|++|++++|+.++++.+...+...     .  ...++.++.+|+++.+++.+.
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            467899999999999999999999999999999999988877665544321     0  113588899999999887653


Q ss_pred             HHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           94 ASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                             ++++|+||||+|....    ...+|...+.+|+.|+
T Consensus       157 -------LggiDiVVn~AG~~~~----~v~d~~~~~~VN~~Gt  188 (576)
T PLN03209        157 -------LGNASVVICCIGASEK----EVFDVTGPYRIDYLAT  188 (576)
T ss_pred             -------hcCCCEEEEccccccc----cccchhhHHHHHHHHH
Confidence                   3578999999996431    1123455566665544

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.55  E-value=4.9e-14  Score=103.04  Aligned_cols=102  Identities=14%  Similarity=0.125  Sum_probs=76.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++|+++||||+|+||.++++.|+++|  ++|++++|+......+...+    ...++.++.+|++|.+.+.++++    
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~~~----   73 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRALR----   73 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHHHh----
Confidence            468999999999999999999999986  68999998765543332222    13468889999999999887765    


Q ss_pred             cCCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         ++|++||+||.... ..+.+   ..+.+++|+.|++
T Consensus        74 ---~iD~Vih~Ag~~~~~~~~~~---~~~~~~~Nv~g~~  106 (324)
T TIGR03589        74 ---GVDYVVHAAALKQVPAAEYN---PFECIRTNINGAQ  106 (324)
T ss_pred             ---cCCEEEECcccCCCchhhcC---HHHHHHHHHHHHH
Confidence               48999999997532 11223   2467889988765

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.53  E-value=5.9e-14  Score=102.98  Aligned_cols=110  Identities=21%  Similarity=0.176  Sum_probs=79.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH-HHHHHHHh-c-CCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR-DVKVAIVM-Q-NPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~-~~~~~l~~-~-~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.++|++|||||+|+||.+++++|+++|++|++++|..+... .....+.. . ..+..+.++.+|++|.+++.++++..
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            567899999999999999999999999999999988654211 11122211 0 01245889999999999999998874


Q ss_pred             HhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                           ++|+|||+|+.....  ...+.....+++|+.|+.
T Consensus        83 -----~~d~Vih~A~~~~~~--~~~~~~~~~~~~N~~gt~  115 (340)
T PLN02653         83 -----KPDEVYNLAAQSHVA--VSFEMPDYTADVVATGAL  115 (340)
T ss_pred             -----CCCEEEECCcccchh--hhhhChhHHHHHHHHHHH
Confidence                 589999999975321  222334566677776653

>PLN02240 UDP-glucose 4-epimerase

Probab=99.52  E-value=1.4e-13  Score=101.24  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=79.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN--PAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +|++|+++||||+|+||.+++++|+++|++|++++|...........+....  .+..+.++.+|+++++++.++++.. 
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~-   80 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST-   80 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC-
Confidence            5678999999999999999999999999999999875433222112222111  1245788999999999999888752 


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          ++|++||+|+....  ..+.+++.+.+++|+.+++
T Consensus        81 ----~~d~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~  113 (352)
T PLN02240         81 ----RFDAVIHFAGLKAV--GESVAKPLLYYDNNLVGTI  113 (352)
T ss_pred             ----CCCEEEEccccCCc--cccccCHHHHHHHHHHHHH
Confidence                68999999996432  1233455667788876653

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.52  E-value=1.5e-13  Score=104.38  Aligned_cols=111  Identities=13%  Similarity=0.129  Sum_probs=80.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc---h----h---------HHHHHHHHhcCCCCeeEEEEecC
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA---A----G---------RDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~---~----~---------~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      ..+++++|||||+|+||..+++.|+++|++|+++++...   .    .         .+....+... .+.++.++.+|+
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~~Dl  122 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV-SGKEIELYVGDI  122 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh-hCCcceEEECCC
Confidence            467889999999999999999999999999999864211   1    0         0111111111 124588999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455           85 SSLASVRKFASDFTARALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|.+.+.++++..     ++|+|||+|+.... ....+++++...+++|+.|++
T Consensus       123 ~d~~~v~~~l~~~-----~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~  171 (442)
T PLN02572        123 CDFEFLSEAFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTL  171 (442)
T ss_pred             CCHHHHHHHHHhC-----CCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHH
Confidence            9999999988863     68999999976432 224455667778889988865

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.49  E-value=2.9e-13  Score=98.62  Aligned_cols=105  Identities=18%  Similarity=0.203  Sum_probs=75.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -++|+++||||+|.||..++++|+++|++|+++.|+.+..+.............++.++.+|+++.+.+.++++      
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------   76 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE------   76 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh------
Confidence            45889999999999999999999999999999999876544332222111112467889999999998887776      


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                       .+|++||+|+...... .  +...+.+++|+.|+
T Consensus        77 -~~d~vih~A~~~~~~~-~--~~~~~~~~~nv~gt  107 (322)
T PLN02986         77 -GCDAVFHTASPVFFTV-K--DPQTELIDPALKGT  107 (322)
T ss_pred             -CCCEEEEeCCCcCCCC-C--CchhhhhHHHHHHH
Confidence             3799999999642211 1  12245667777665

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.49  E-value=1.4e-14  Score=103.48  Aligned_cols=103  Identities=23%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCee----EEEEecCCCHHHHHHHHHHHHhcC
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKV----DVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~----~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +|||||+|+||.++|++|++.+. +++++++++..+.++..+++...++.++    ..+.+|+.|.+.+.+++++.    
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~----   76 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY----   76 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence            68999999999999999999986 7999999999999988888765544333    34588999999999998864    


Q ss_pred             CCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|+++|.|+.-+. ..+.   ...+.+.+|+.|+.
T Consensus        77 -~pdiVfHaAA~KhVpl~E~---~p~eav~tNv~GT~  109 (293)
T PF02719_consen   77 -KPDIVFHAAALKHVPLMED---NPFEAVKTNVLGTQ  109 (293)
T ss_dssp             -T-SEEEE------HHHHCC---CHHHHHHHHCHHHH
T ss_pred             -CCCEEEEChhcCCCChHHh---CHHHHHHHHHHHHH
Confidence             79999999997552 2233   34668999998864

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.46  E-value=4.2e-13  Score=98.64  Aligned_cols=105  Identities=17%  Similarity=0.131  Sum_probs=73.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchh-HHHHHHHHhc---CCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG-RDVKVAIVMQ---NPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~-~~~~~~l~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      |++|||||+|.||..++++|+++|++|++++|+.+.. .+....+...   ..+..+.++.+|++|.+++.++++..   
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~---   77 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI---   77 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC---
Confidence            6899999999999999999999999999999876421 1111111111   01235788999999999999988874   


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                        ++|++||+|+..+...  +.+.-...+++|+.|+
T Consensus        78 --~~d~ViH~Aa~~~~~~--~~~~~~~~~~~n~~gt  109 (343)
T TIGR01472        78 --KPTEIYNLAAQSHVKV--SFEIPEYTADVDGIGT  109 (343)
T ss_pred             --CCCEEEECCcccccch--hhhChHHHHHHHHHHH
Confidence              5899999999754211  1122234555665554

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.45  E-value=1.3e-12  Score=96.47  Aligned_cols=85  Identities=21%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +..++++|||||+|.||..+++.|+++|++|++++|+.+..+.....+..   +.++.++.+|+++.+.+.++++     
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~-----   78 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVK-----   78 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHc-----
Confidence            35577899999999999999999999999999999987655544333321   3468889999999998877764     


Q ss_pred             CCCccEEEECcccCC
Q 042455          101 ALPLNILINKAGICG  115 (138)
Q Consensus       101 ~~~id~lv~~ag~~~  115 (138)
                        .+|+|||+|+...
T Consensus        79 --~~d~Vih~A~~~~   91 (353)
T PLN02896         79 --GCDGVFHVAASME   91 (353)
T ss_pred             --CCCEEEECCcccc
Confidence              4799999999764

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.42  E-value=1.7e-12  Score=94.31  Aligned_cols=103  Identities=16%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhc-CCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQ-NPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+|++|||||+|.||..++++|+++|++|.++.|+....... ..+... ....++.++.+|+++.+.+..+++      
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------   75 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKT-EHLLALDGAKERLHLFKANLLEEGSFDSVVD------   75 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhH-HHHHhccCCCCceEEEeccccCcchHHHHHc------
Confidence            368999999999999999999999999999999876543322 122211 112367889999999988877765      


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                       .+|++||+|+...... ..+  ....+++|+.|+
T Consensus        76 -~~d~Vih~A~~~~~~~-~~~--~~~~~~~nv~gt  106 (322)
T PLN02662         76 -GCEGVFHTASPFYHDV-TDP--QAELIDPAVKGT  106 (322)
T ss_pred             -CCCEEEEeCCcccCCC-CCh--HHHHHHHHHHHH
Confidence             4799999999643211 111  135666776654

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.41  E-value=1.2e-12  Score=96.44  Aligned_cols=104  Identities=15%  Similarity=0.242  Sum_probs=73.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEE-EEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHV-IMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v-~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      |++|||||+|.||.++++.|+++|+.+ +++++..... .. ..+....+..++.++.+|++|.++++++++.     .+
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~   74 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAG-NL-MSLAPVAQSERFAFEKVDICDRAELARVFTE-----HQ   74 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcccc-ch-hhhhhcccCCceEEEECCCcChHHHHHHHhh-----cC
Confidence            579999999999999999999999864 4555543211 11 1111111134577889999999999888876     26


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+|||+||....  ..+.+++...+++|+.|++
T Consensus        75 ~D~Vih~A~~~~~--~~~~~~~~~~~~~N~~gt~  106 (355)
T PRK10217         75 PDCVMHLAAESHV--DRSIDGPAAFIETNIVGTY  106 (355)
T ss_pred             CCEEEECCcccCc--chhhhChHHHHHHhhHHHH
Confidence            9999999996432  2344567788888887764

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.40  E-value=3.4e-12  Score=93.62  Aligned_cols=105  Identities=14%  Similarity=0.128  Sum_probs=73.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +.+++++||||+|.||..+++.|+++|++|+++.|+.+...... .+.......++.++.+|++|.+.+.++++      
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   79 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIA-HLRALQELGDLKIFGADLTDEESFEAPIA------   79 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHhcCCCCceEEEEcCCCChHHHHHHHh------
Confidence            45789999999999999999999999999998888765433221 11111001257888999999988877664      


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|++||+|+.... .  ..+.+...+++|+.|++
T Consensus        80 -~~d~vih~A~~~~~-~--~~~~~~~~~~~nv~g~~  111 (338)
T PLN00198         80 -GCDLVFHVATPVNF-A--SEDPENDMIKPAIQGVH  111 (338)
T ss_pred             -cCCEEEEeCCCCcc-C--CCChHHHHHHHHHHHHH
Confidence             47999999985321 1  11223455677776653

>PLN02650 dihydroflavonol-4-reductase

Probab=99.40  E-value=2.8e-12  Score=94.58  Aligned_cols=105  Identities=21%  Similarity=0.101  Sum_probs=75.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+|++|||||+|.||..++++|+++|++|++++|+.+........+.......++.++.+|+++.+.+..+++       
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~-------   76 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR-------   76 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh-------
Confidence            4678999999999999999999999999999999876554433222111101357889999999998887765       


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+|++||+|+.... ...  +.+...+++|+.|++
T Consensus        77 ~~d~ViH~A~~~~~-~~~--~~~~~~~~~Nv~gt~  108 (351)
T PLN02650         77 GCTGVFHVATPMDF-ESK--DPENEVIKPTVNGML  108 (351)
T ss_pred             CCCEEEEeCCCCCC-CCC--CchhhhhhHHHHHHH
Confidence            37999999986431 111  223456777877654

>PLN02214 cinnamoyl-CoA reductase

Probab=99.40  E-value=2.9e-12  Score=94.40  Aligned_cols=100  Identities=21%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH-HHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV-KVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~-~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++|+++||||+|.||..+++.|+++|++|.+++|+.+..... ...+..  ...++.++.+|++|.+++..+++     
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~-----   80 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG--GKERLILCKADLQDYEALKAAID-----   80 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC--CCCcEEEEecCcCChHHHHHHHh-----
Confidence            4578999999999999999999999999999999986543221 122221  12357888999999998887775     


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        ++|+|||+|+...       +++.+.+++|+.|+.
T Consensus        81 --~~d~Vih~A~~~~-------~~~~~~~~~nv~gt~  108 (342)
T PLN02214         81 --GCDGVFHTASPVT-------DDPEQMVEPAVNGAK  108 (342)
T ss_pred             --cCCEEEEecCCCC-------CCHHHHHHHHHHHHH
Confidence              4799999998531       234566777776653

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.37  E-value=1.3e-11  Score=83.18  Aligned_cols=85  Identities=16%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+ |+|.++++.|+++|++|.+++|+++..+.+...+..   ..++.++.+|++|.+++.++++.+.++++++|
T Consensus         2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~---~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id   77 (177)
T PRK08309          2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT---PESITPLPLDYHDDDALKLAIKSTIEKNGPFD   77 (177)
T ss_pred             EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCe
Confidence            58999998 788889999999999999999987776665544422   34688899999999999999999999899999


Q ss_pred             EEEECcccC
Q 042455          106 ILINKAGIC  114 (138)
Q Consensus       106 ~lv~~ag~~  114 (138)
                      ++|+.+=..
T Consensus        78 ~lv~~vh~~   86 (177)
T PRK08309         78 LAVAWIHSS   86 (177)
T ss_pred             EEEEecccc
Confidence            999887654

>PLN02583 cinnamoyl-CoA reductase

Probab=99.36  E-value=9.8e-12  Score=89.88  Aligned_cols=103  Identities=15%  Similarity=0.017  Sum_probs=73.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch--hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA--GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      -++|+++||||+|+||.+++++|+++|++|+++.|+...  ..+....+...  +.++.++.+|++|.+++.+++.    
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~----   77 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALK----   77 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHc----
Confidence            357899999999999999999999999999999986432  22222222111  2457888999999988866554    


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         ..|.+++.++...   +.. +++++++++|+.|++
T Consensus        78 ---~~d~v~~~~~~~~---~~~-~~~~~~~~~nv~gt~  108 (297)
T PLN02583         78 ---GCSGLFCCFDPPS---DYP-SYDEKMVDVEVRAAH  108 (297)
T ss_pred             ---CCCEEEEeCccCC---ccc-ccHHHHHHHHHHHHH
Confidence               4688887665322   111 245788999988865

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=99.34  E-value=4.3e-12  Score=88.62  Aligned_cols=93  Identities=13%  Similarity=0.207  Sum_probs=72.9

Q ss_pred             EEEeCC-CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           27 AIVTGA-SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        27 ~litG~-~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      =.||.. +||||+++|+.|+++|++|+++++...        +...  .    ...+|+++.++++++++.+.+.++++|
T Consensus        17 R~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~~~--~----~~~~Dv~d~~s~~~l~~~v~~~~g~iD   82 (227)
T TIGR02114        17 RSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LKPE--P----HPNLSIREIETTKDLLITLKELVQEHD   82 (227)
T ss_pred             eeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------cccc--c----CCcceeecHHHHHHHHHHHHHHcCCCC
Confidence            355655 679999999999999999999876311        1100  1    235899999999999999999999999


Q ss_pred             EEEECcccCC--CCCccCHHHHHHHhhhcc
Q 042455          106 ILINKAGICG--TPFMLSKDNIELHFATNH  133 (138)
Q Consensus       106 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~  133 (138)
                      ++|||||+..  +..+.+.++|++++..|.
T Consensus        83 iLVnnAgv~d~~~~~~~s~e~~~~~~~~~~  112 (227)
T TIGR02114        83 ILIHSMAVSDYTPVYMTDLEQVQASDNLNE  112 (227)
T ss_pred             EEEECCEeccccchhhCCHHHHhhhcchhh
Confidence            9999999763  455788999999876653

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.33  E-value=7.2e-13  Score=90.80  Aligned_cols=112  Identities=13%  Similarity=0.115  Sum_probs=83.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+|.+|+||+++|||..+++.+..++-.....+++...++  ...+.-.. +........|+++..-+.++++..+.+.+
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~~-gd~~v~~~g~~~e~~~l~al~e~~r~k~g   81 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVAY-GDDFVHVVGDITEEQLLGALREAPRKKGG   81 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEEe-cCCcceechHHHHHHHHHHHHhhhhhcCC
Confidence            4788999999999999999999988765544444433332  22222222 23334456788888888999999999999


Q ss_pred             CccEEEECcccCCCCC-----ccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGTPF-----MLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~-----~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.|++|||||..++..     ..+.++|.+.|+.|+++.+
T Consensus        82 kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~V  121 (253)
T KOG1204|consen   82 KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMV  121 (253)
T ss_pred             ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHH
Confidence            9999999999986532     4678999999999998864

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.31  E-value=2e-11  Score=88.44  Aligned_cols=103  Identities=18%  Similarity=0.140  Sum_probs=77.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH--HHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD--VKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++.++||||+|-||..+++.|+++||.|..+.|+++..+.  ...++...  ..+...+..|++|++++..+++.    
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a--~~~l~l~~aDL~d~~sf~~ai~g----   78 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGA--KERLKLFKADLLDEGSFDKAIDG----   78 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccC--cccceEEeccccccchHHHHHhC----
Confidence            67899999999999999999999999999999999887443  23333322  45689999999999999988885    


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         .|+|+|.|....... .+++  .+.++..+.|+.
T Consensus        79 ---cdgVfH~Asp~~~~~-~~~e--~~li~pav~Gt~  109 (327)
T KOG1502|consen   79 ---CDGVFHTASPVDFDL-EDPE--KELIDPAVKGTK  109 (327)
T ss_pred             ---CCEEEEeCccCCCCC-CCcH--HhhhhHHHHHHH
Confidence               699999998643211 1111  246666665543

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.31  E-value=2.8e-11  Score=88.59  Aligned_cols=103  Identities=23%  Similarity=0.223  Sum_probs=71.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|.||..+++.|+++|++|++++|...........+... ++.++.++.+|++|.+.+.++++.     .++|
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d   75 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIRNEALLTEILHD-----HAID   75 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh-cCCCceEEEccCCCHHHHHHHHhc-----CCCC
Confidence            5899999999999999999999999998876543322222222221 134567789999999998888764     3699


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++||+||......  ..+.....+++|+.++
T Consensus        76 ~vvh~a~~~~~~~--~~~~~~~~~~~n~~~~  104 (338)
T PRK10675         76 TVIHFAGLKAVGE--SVQKPLEYYDNNVNGT  104 (338)
T ss_pred             EEEECCccccccc--hhhCHHHHHHHHHHHH
Confidence            9999998753211  1122344566666544

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.30  E-value=4e-11  Score=89.86  Aligned_cols=89  Identities=24%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH--HHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD--VKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .+.++++++||||+|.||..+++.|+++|++|+++.|+......  ...++...  ...+.++.+|++|.+++.++++..
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~  133 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDADSLRKVLFSE  133 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh--cCCceEEEeeCCCHHHHHHHHHHh
Confidence            34567899999999999999999999999999999998754321  11111111  235788999999999999988754


Q ss_pred             HhcCCCccEEEECccc
Q 042455           98 TARALPLNILINKAGI  113 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~  113 (138)
                      .   +++|+||||+|.
T Consensus       134 ~---~~~D~Vi~~aa~  146 (390)
T PLN02657        134 G---DPVDVVVSCLAS  146 (390)
T ss_pred             C---CCCcEEEECCcc
Confidence            1   269999999985

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.29  E-value=2.4e-11  Score=89.63  Aligned_cols=109  Identities=15%  Similarity=0.103  Sum_probs=75.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC---CCCeeEEEEecCCCHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN---PAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ..+.+|+++||||+|-||..++++|+++|++|++++|...........+....   ...++.++.+|+.|.+.+..+++ 
T Consensus        11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~-   89 (348)
T PRK15181         11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK-   89 (348)
T ss_pred             ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh-
Confidence            34667899999999999999999999999999999886543222222221111   11357889999999888777765 


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                            .+|+|||.|+......  +.++....+++|+.|+.
T Consensus        90 ------~~d~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~  122 (348)
T PRK15181         90 ------NVDYVLHQAALGSVPR--SLKDPIATNSANIDGFL  122 (348)
T ss_pred             ------CCCEEEECccccCchh--hhhCHHHHHHHHHHHHH
Confidence                  3799999999653221  11223345777776653

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.28  E-value=2.2e-11  Score=87.99  Aligned_cols=101  Identities=18%  Similarity=0.186  Sum_probs=70.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchh-HHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           26 TAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAG-RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +++||||+|+||.+++++|++.|  ++|++++|..... .+....+..   ...+.++.+|++|++++.++++..     
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~-----   72 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLED---NPRYRFVKGDIGDRELVSRLFTEH-----   72 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhcc---CCCcEEEEcCCcCHHHHHHHHhhc-----
Confidence            48999999999999999999987  6888887643211 111122211   235778899999999998888753     


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++|++||+|+....  ..+.+.+...+++|+.++
T Consensus        73 ~~d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~  104 (317)
T TIGR01181        73 QPDAVVHFAAESHV--DRSISGPAAFIETNVVGT  104 (317)
T ss_pred             CCCEEEEcccccCc--hhhhhCHHHHHHHHHHHH
Confidence            58999999996431  223344556677776654

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.27  E-value=3.1e-11  Score=87.51  Aligned_cols=101  Identities=20%  Similarity=0.218  Sum_probs=69.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|.||..+++.|+++|++|+++++...........+..   ...+..+.+|+++.+++.++++.     +++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~-----~~~d   72 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER---ITRVTFVEGDLRDRELLDRLFEE-----HKID   72 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc---ccceEEEECCCCCHHHHHHHHHh-----CCCc
Confidence            478999999999999999999999998887644332222222211   12577889999999999888874     4799


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++||+||......  +.++..+.+..|+.++
T Consensus        73 ~vv~~ag~~~~~~--~~~~~~~~~~~n~~~~  101 (328)
T TIGR01179        73 AVIHFAGLIAVGE--SVQDPLKYYRNNVVNT  101 (328)
T ss_pred             EEEECccccCcch--hhcCchhhhhhhHHHH
Confidence            9999999753211  1222334555565543

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.26  E-value=4.1e-11  Score=88.30  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=70.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +++||||+|.||..+++.|+++|.+ |+.+++......  ...+....++.++.++.+|++|.+++++++++     .++
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~   74 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LESLADVSDSERYVFEHADICDRAELDRIFAQ-----HQP   74 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHHHHhcccCCceEEEEecCCCHHHHHHHHHh-----cCC
Confidence            5899999999999999999999975 555554321111  11111111234577889999999999998876     269


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++||+||....  ....+..++.+++|+.|++
T Consensus        75 d~vih~A~~~~~--~~~~~~~~~~~~~N~~gt~  105 (352)
T PRK10084         75 DAVMHLAAESHV--DRSITGPAAFIETNIVGTY  105 (352)
T ss_pred             CEEEECCcccCC--cchhcCchhhhhhhhHHHH
Confidence            999999996432  1122234567888887764

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.20  E-value=6.1e-11  Score=86.16  Aligned_cols=92  Identities=27%  Similarity=0.305  Sum_probs=69.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++|||++|.||..+++.|+++|++|++++|+.+....    +.    ...+.++.+|+++.+++.++++       .+|
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~----~~~~~~~~~D~~~~~~l~~~~~-------~~d   66 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN----LE----GLDVEIVEGDLRDPASLRKAVA-------GCR   66 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc----cc----cCCceEEEeeCCCHHHHHHHHh-------CCC
Confidence            68999999999999999999999999999998665322    11    2347789999999998877765       479


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++||+++....    ..+.+...+++|+.++
T Consensus        67 ~vi~~a~~~~~----~~~~~~~~~~~n~~~~   93 (328)
T TIGR03466        67 ALFHVAADYRL----WAPDPEEMYAANVEGT   93 (328)
T ss_pred             EEEEeceeccc----CCCCHHHHHHHHHHHH
Confidence            99999985321    1122445666676654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02686 cinnamoyl-CoA reductase

Probab=99.16  E-value=5.8e-10  Score=82.99  Aligned_cols=88  Identities=17%  Similarity=0.142  Sum_probs=66.5

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC----CCCeeEEEEecCCCHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN----PAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ...+++|++|||||+|+||.++++.|+++|++|+++.|+.+..+.+ ..+....    ....+.++.+|++|.+++.+++
T Consensus        48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i  126 (367)
T PLN02686         48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAF  126 (367)
T ss_pred             ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence            3457789999999999999999999999999999888876554433 2221110    0124778899999999998887


Q ss_pred             HHHHhcCCCccEEEECcccC
Q 042455           95 SDFTARALPLNILINKAGIC  114 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~  114 (138)
                      +.       +|.++|.++..
T Consensus       127 ~~-------~d~V~hlA~~~  139 (367)
T PLN02686        127 DG-------CAGVFHTSAFV  139 (367)
T ss_pred             Hh-------ccEEEecCeee
Confidence            64       57888887754

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.14  E-value=3e-10  Score=81.73  Aligned_cols=107  Identities=21%  Similarity=0.233  Sum_probs=79.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++++|||||+|-||...+-+|++.|+.|++++.-...........+... .+..+.++..|+.|.+.++++|++.     
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~-----   76 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV-----   76 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhc-----
Confidence            5789999999999999999999999999999874443333333333322 2478999999999999999999986     


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|.|+|-|+..+..+  +.+...+.++.|+.|++
T Consensus        77 ~fd~V~Hfa~~~~vge--S~~~p~~Y~~nNi~gtl  109 (343)
T KOG1371|consen   77 KFDAVMHFAALAAVGE--SMENPLSYYHNNIAGTL  109 (343)
T ss_pred             CCceEEeehhhhccch--hhhCchhheehhhhhHH
Confidence            5999999999764222  22333555666666543

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.13  E-value=5.2e-10  Score=77.66  Aligned_cols=95  Identities=22%  Similarity=0.249  Sum_probs=71.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      +|||||+|-||.+++++|+++|+.|+.+.|...........       ..+.++.+|+.|.+.++.+++..     .+|.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~dl~~~~~~~~~~~~~-----~~d~   68 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK-------LNVEFVIGDLTDKEQLEKLLEKA-----NIDV   68 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH-------TTEEEEESETTSHHHHHHHHHHH-----TESE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc-------ceEEEEEeecccccccccccccc-----CceE
Confidence            68999999999999999999999988888876654332221       15889999999999999999986     7999


Q ss_pred             EEECcccCCCCCccCHHHHHHHhhhcccc
Q 042455          107 LINKAGICGTPFMLSKDNIELHFATNHLG  135 (138)
Q Consensus       107 lv~~ag~~~~~~~~~~~~~~~~~~~n~~g  135 (138)
                      +|++|+...  ...+.+.....++.|+.+
T Consensus        69 vi~~a~~~~--~~~~~~~~~~~~~~n~~~   95 (236)
T PF01370_consen   69 VIHLAAFSS--NPESFEDPEEIIEANVQG   95 (236)
T ss_dssp             EEEEBSSSS--HHHHHHSHHHHHHHHHHH
T ss_pred             EEEeecccc--cccccccccccccccccc
Confidence            999999743  111223344555555543

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.13  E-value=5.4e-10  Score=79.83  Aligned_cols=98  Identities=20%  Similarity=0.224  Sum_probs=76.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|-||...+++|++.|++|++++.-...-.+.....       ...+++.|+.|.+.+.+++++-     +||
T Consensus         2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~-------~~~f~~gDi~D~~~L~~vf~~~-----~id   69 (329)
T COG1087           2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL-------QFKFYEGDLLDRALLTAVFEEN-----KID   69 (329)
T ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc-------cCceEEeccccHHHHHHHHHhc-----CCC
Confidence            6899999999999999999999999999988655444433322       1578999999999999999884     799


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+||.||...-.  .|.++-.+.++.|+.|++
T Consensus        70 aViHFAa~~~Vg--ESv~~Pl~Yy~NNv~gTl   99 (329)
T COG1087          70 AVVHFAASISVG--ESVQNPLKYYDNNVVGTL   99 (329)
T ss_pred             EEEECccccccc--hhhhCHHHHHhhchHhHH
Confidence            999999975321  244555667777877653

>PLN02427 UDP-apiose/xylose synthase

Probab=99.13  E-value=2.9e-10  Score=84.96  Aligned_cols=86  Identities=15%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.++++||||+|.||..+++.|+++ |++|++++|+.+............. ..++.++.+|++|.+.+.++++.    
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~----   86 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPW-SGRIQFHRINIKHDSRLEGLIKM----   86 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccC-CCCeEEEEcCCCChHHHHHHhhc----
Confidence            34568999999999999999999998 5899999987654332211100001 13588999999999888777652    


Q ss_pred             CCCccEEEECcccCC
Q 042455          101 ALPLNILINKAGICG  115 (138)
Q Consensus       101 ~~~id~lv~~ag~~~  115 (138)
                         +|+|||+|+...
T Consensus        87 ---~d~ViHlAa~~~   98 (386)
T PLN02427         87 ---ADLTINLAAICT   98 (386)
T ss_pred             ---CCEEEEcccccC
Confidence               699999999754

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.13  E-value=1.6e-10  Score=83.14  Aligned_cols=95  Identities=19%  Similarity=0.160  Sum_probs=69.7

Q ss_pred             EEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           28 IVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        28 litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      |||||+|.||..++++|+++|  ++|.++++.......  ..+..   .....++.+|++|++++.++++.       .|
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~---~~~~~~~~~Di~d~~~l~~a~~g-------~d   68 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQK---SGVKEYIQGDITDPESLEEALEG-------VD   68 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhc---ccceeEEEeccccHHHHHHHhcC-------Cc
Confidence            699999999999999999999  688888887654221  11111   12233899999999999888874       69


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++||.|+......   ....++.+++|+.|+-
T Consensus        69 ~V~H~Aa~~~~~~---~~~~~~~~~vNV~GT~   97 (280)
T PF01073_consen   69 VVFHTAAPVPPWG---DYPPEEYYKVNVDGTR   97 (280)
T ss_pred             eEEEeCccccccC---cccHHHHHHHHHHHHH
Confidence            9999999754322   2234668888988763

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=99.10  E-value=7.4e-10  Score=83.07  Aligned_cols=79  Identities=25%  Similarity=0.326  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEeCC----------------CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEec
Q 042455           20 IDAAGVTAIVTGA----------------SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD   83 (138)
Q Consensus        20 ~~~~~k~~litG~----------------~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D   83 (138)
                      .++.||+++||||                +|.+|.++|+.|+.+|++|++++++.+. +         .+.   ....+|
T Consensus       184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~-~---------~~~---~~~~~d  250 (399)
T PRK05579        184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNL-P---------TPA---GVKRID  250 (399)
T ss_pred             cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccc-c---------CCC---CcEEEc
Confidence            3578999999999                4559999999999999999999987521 1         111   134679


Q ss_pred             CCCHHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           84 LSSLASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      +++.+++.+.+.   +.++++|++|+|||+.
T Consensus       251 v~~~~~~~~~v~---~~~~~~DilI~~Aav~  278 (399)
T PRK05579        251 VESAQEMLDAVL---AALPQADIFIMAAAVA  278 (399)
T ss_pred             cCCHHHHHHHHH---HhcCCCCEEEEccccc
Confidence            999888877766   4568899999999985

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.08  E-value=1.3e-09  Score=76.99  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=60.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..+++++||||+|+||.++++.|+++|++|+++.|+.++.....    ..  +..+.++.+|+++..  ..+.+.+.   
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~----~~--~~~~~~~~~Dl~d~~--~~l~~~~~---   83 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL----PQ--DPSLQIVRADVTEGS--DKLVEAIG---   83 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc----cc--CCceEEEEeeCCCCH--HHHHHHhh---
Confidence            34678999999999999999999999999999999876543321    11  235788999999731  12222221   


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                      .++|++|+++|..
T Consensus        84 ~~~d~vi~~~g~~   96 (251)
T PLN00141         84 DDSDAVICATGFR   96 (251)
T ss_pred             cCCCEEEECCCCC
Confidence            2689999999864

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=99.08  E-value=1.2e-09  Score=78.93  Aligned_cols=84  Identities=19%  Similarity=0.211  Sum_probs=65.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCc---chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNM---AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+++|+++|+|+ ||+|++++..|+..|++ |.+++|+.   ++++++.+++....  ..+....+|+++.++++..++ 
T Consensus       123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~~~~~~~~~~-  198 (289)
T PRK12548        123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLNDTEKLKAEIA-  198 (289)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechhhhhHHHhhhc-
Confidence            467899999999 69999999999999985 99999987   66777666665442  334556788887777655444 


Q ss_pred             HHhcCCCccEEEECcccC
Q 042455           97 FTARALPLNILINKAGIC  114 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~  114 (138)
                            ..|+||||..+.
T Consensus       199 ------~~DilINaTp~G  210 (289)
T PRK12548        199 ------SSDILVNATLVG  210 (289)
T ss_pred             ------cCCEEEEeCCCC
Confidence                  359999999765

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.07  E-value=1.9e-09  Score=72.37  Aligned_cols=71  Identities=25%  Similarity=0.294  Sum_probs=62.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      ++|+||+|.+|+.++++|+++|++|.++.|++++.++          ...+..+.+|+.|++++.+++.       +.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~-------~~d~   63 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALK-------GADA   63 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHT-------TSSE
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhh-------hcch
Confidence            6899999999999999999999999999999887665          2568899999999988877766       4799


Q ss_pred             EEECcccC
Q 042455          107 LINKAGIC  114 (138)
Q Consensus       107 lv~~ag~~  114 (138)
                      +|+++|..
T Consensus        64 vi~~~~~~   71 (183)
T PF13460_consen   64 VIHAAGPP   71 (183)
T ss_dssp             EEECCHST
T ss_pred             hhhhhhhh
Confidence            99999853

...

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=5.7e-10  Score=79.56  Aligned_cols=102  Identities=17%  Similarity=0.238  Sum_probs=75.6

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++|||||+|.||..+++.++++..  +|+.++.-.-  ..+.+ ..+   ....+..++++|++|.+.+.+++++-   
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l-~~~---~~~~~~~fv~~DI~D~~~v~~~~~~~---   73 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENL-ADV---EDSPRYRFVQGDICDRELVDRLFKEY---   73 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHH-Hhh---hcCCCceEEeccccCHHHHHHHHHhc---
Confidence            4689999999999999999998864  4666665321  12222 222   12457999999999999999999874   


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        ++|+++|-|+-.+  .+-+.++-...+++|+.|++
T Consensus        74 --~~D~VvhfAAESH--VDRSI~~P~~Fi~TNv~GT~  106 (340)
T COG1088          74 --QPDAVVHFAAESH--VDRSIDGPAPFIQTNVVGTY  106 (340)
T ss_pred             --CCCeEEEechhcc--ccccccChhhhhhcchHHHH
Confidence              6899999999644  34455555678889999876

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.05  E-value=1.7e-09  Score=86.07  Aligned_cols=106  Identities=13%  Similarity=0.084  Sum_probs=70.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+.|++|||||+|.||..+++.|+++  +++|+++++.... .. ...+........+.++.+|++|.+.+..++..   
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~-~~-~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~---   78 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYC-SN-LKNLNPSKSSPNFKFVKGDIASADLVNYLLIT---   78 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCcc-ch-hhhhhhcccCCCeEEEECCCCChHHHHHHHhh---
Confidence            45689999999999999999999997  5789888875311 11 11111111134588899999999887776543   


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                        .++|+|||+|+......  +.++....+++|+.|+
T Consensus        79 --~~~D~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt  111 (668)
T PLN02260         79 --EGIDTIMHFAAQTHVDN--SFGNSFEFTKNNIYGT  111 (668)
T ss_pred             --cCCCEEEECCCccCchh--hhhCHHHHHHHHHHHH
Confidence              36999999999753211  1122234556666554

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.00  E-value=1.6e-09  Score=79.77  Aligned_cols=77  Identities=12%  Similarity=0.152  Sum_probs=57.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC-CHHHHHHHHHHHHhcCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS-SLASVRKFASDFTARAL  102 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~~~  102 (138)
                      ++++||||+|.||..+++.|++. |++|++++|+.....    .+.   +...+.++.+|++ +.+.+..+++       
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~----~~~---~~~~~~~~~~Dl~~~~~~~~~~~~-------   67 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG----DLV---NHPRMHFFEGDITINKEWIEYHVK-------   67 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH----Hhc---cCCCeEEEeCCCCCCHHHHHHHHc-------
Confidence            46999999999999999999986 689999988654322    121   1235888899997 6666555433       


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      ++|+|||+|+...
T Consensus        68 ~~d~ViH~aa~~~   80 (347)
T PRK11908         68 KCDVILPLVAIAT   80 (347)
T ss_pred             CCCEEEECcccCC
Confidence            4899999999753

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=98.99  E-value=1.3e-09  Score=78.01  Aligned_cols=80  Identities=23%  Similarity=0.350  Sum_probs=61.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      ++||||+|.||..++++|+++|++|+++.|.                       .+|+.+.+.+.++++..     ++|+
T Consensus         2 ilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~-----~~d~   53 (287)
T TIGR01214         2 ILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAI-----RPDA   53 (287)
T ss_pred             EEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhC-----CCCE
Confidence            7999999999999999999999999998874                       46999999998888763     5899


Q ss_pred             EEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          107 LINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       107 lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +||++|......  ........+++|+.++
T Consensus        54 vi~~a~~~~~~~--~~~~~~~~~~~n~~~~   81 (287)
T TIGR01214        54 VVNTAAYTDVDG--AESDPEKAFAVNALAP   81 (287)
T ss_pred             EEECCccccccc--cccCHHHHHHHHHHHH
Confidence            999999643211  1122344566666543

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=98.99  E-value=5.9e-10  Score=78.25  Aligned_cols=76  Identities=29%  Similarity=0.364  Sum_probs=61.5

Q ss_pred             HHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEEEECcccCCCCCc
Q 042455           40 TTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFM  119 (138)
Q Consensus        40 ~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~  119 (138)
                      +|+.|+++|++|++++|+.+..+     +        ..++++|++|.++++++++++.   +++|+||||||...    
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~--------~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~----   60 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMT-----L--------DGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG----   60 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhh-----h--------hHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC----
Confidence            47899999999999999876532     1        1356899999999999998874   68999999999742    


Q ss_pred             cCHHHHHHHhhhcccccc
Q 042455          120 LSKDNIELHFATNHLGAF  137 (138)
Q Consensus       120 ~~~~~~~~~~~~n~~g~~  137 (138)
                        .+.|++++++|+.+++
T Consensus        61 --~~~~~~~~~vN~~~~~   76 (241)
T PRK12428         61 --TAPVELVARVNFLGLR   76 (241)
T ss_pred             --CCCHHHhhhhchHHHH
Confidence              2357899999998876

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.97  E-value=4.8e-09  Score=76.51  Aligned_cols=74  Identities=18%  Similarity=0.159  Sum_probs=59.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|.||..+++.|+++|++|.+++|+.++...    +.    ...+.++.+|++|++++.++++       .+|
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~----l~----~~~v~~v~~Dl~d~~~l~~al~-------g~d   66 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASF----LK----EWGAELVYGDLSLPETLPPSFK-------GVT   66 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhh----Hh----hcCCEEEECCCCCHHHHHHHHC-------CCC
Confidence            69999999999999999999999999999998654322    11    1247788999999998876665       479


Q ss_pred             EEEECcccC
Q 042455          106 ILINKAGIC  114 (138)
Q Consensus       106 ~lv~~ag~~  114 (138)
                      ++||+++..
T Consensus        67 ~Vi~~~~~~   75 (317)
T CHL00194         67 AIIDASTSR   75 (317)
T ss_pred             EEEECCCCC
Confidence            999988743

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.97  E-value=2.6e-09  Score=84.97  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=67.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHH-HHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLAS-VRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~  100 (138)
                      .+++++||||+|.||..+++.|+++ |++|++++|+......    +.   +...+.++.+|++|... ++++++     
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~~---~~~~~~~~~gDl~d~~~~l~~~l~-----  381 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----FL---GHPRFHFVEGDISIHSEWIEYHIK-----  381 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----hc---CCCceEEEeccccCcHHHHHHHhc-----
Confidence            5678999999999999999999986 7999999987643221    11   12357888999998654 343332     


Q ss_pred             CCCccEEEECcccCCCCC-ccCHHHHHHHhhhccccc
Q 042455          101 ALPLNILINKAGICGTPF-MLSKDNIELHFATNHLGA  136 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~-~~~~~~~~~~~~~n~~g~  136 (138)
                        .+|++||+|+...+.. ..++   ...+++|+.++
T Consensus       382 --~~D~ViHlAa~~~~~~~~~~~---~~~~~~Nv~~t  413 (660)
T PRK08125        382 --KCDVVLPLVAIATPIEYTRNP---LRVFELDFEEN  413 (660)
T ss_pred             --CCCEEEECccccCchhhccCH---HHHHHhhHHHH
Confidence              5899999999765321 1222   34556666554

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.94  E-value=2.3e-09  Score=77.65  Aligned_cols=84  Identities=19%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|-||..+++.|+++| +|++++|...                   .+..|++|.+.+.++++..     ++|
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-------------------~~~~Dl~d~~~~~~~~~~~-----~~D   56 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST-------------------DYCGDFSNPEGVAETVRKI-----RPD   56 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-------------------cccCCCCCHHHHHHHHHhc-----CCC
Confidence            59999999999999999999999 7888777421                   2357999999998888753     589


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++||+|+......  ..++-...+.+|+.++
T Consensus        57 ~Vih~Aa~~~~~~--~~~~~~~~~~~N~~~~   85 (299)
T PRK09987         57 VIVNAAAHTAVDK--AESEPEFAQLLNATSV   85 (299)
T ss_pred             EEEECCccCCcch--hhcCHHHHHHHHHHHH
Confidence            9999999754321  1112233455566554

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=98.94  E-value=3.4e-09  Score=76.75  Aligned_cols=94  Identities=19%  Similarity=0.302  Sum_probs=60.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh--cCCCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA--RALPL  104 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~i  104 (138)
                      ++||||+|.||..++++|+++|++++++.|+....... ..           ...+|+.|..+.+.+++.+..  .++++
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~   69 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VN-----------LVDLDIADYMDKEDFLAQIMAGDDFGDI   69 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-Hh-----------hhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence            79999999999999999999999766665554332111 01           124566666666666665542  34679


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      |+|||+||..... ....   ...++.|+.++
T Consensus        70 d~Vih~A~~~~~~-~~~~---~~~~~~n~~~t   97 (308)
T PRK11150         70 EAIFHEGACSSTT-EWDG---KYMMDNNYQYS   97 (308)
T ss_pred             cEEEECceecCCc-CCCh---HHHHHHHHHHH
Confidence            9999999864322 1122   23566666554

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.93  E-value=4.6e-09  Score=78.29  Aligned_cols=78  Identities=18%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -.+++++|||++|.||.++++.|.++|++|.+++|......      ...  ...+.++.+|+++.+.+..++.      
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~------~~~--~~~~~~~~~Dl~d~~~~~~~~~------   84 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM------SED--MFCHEFHLVDLRVMENCLKVTK------   84 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc------ccc--cccceEEECCCCCHHHHHHHHh------
Confidence            36789999999999999999999999999999998643210      000  1124567899999887766653      


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                       ++|+|||+|+..
T Consensus        85 -~~D~Vih~Aa~~   96 (370)
T PLN02695         85 -GVDHVFNLAADM   96 (370)
T ss_pred             -CCCEEEEccccc
Confidence             479999999864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.92  E-value=2.1e-08  Score=68.40  Aligned_cols=85  Identities=18%  Similarity=0.255  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++++++|+|++|++|+.+++.|++.|++|.+++|+.+++++....+.... +  .....+|..+.+++.+.+.    
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~----   96 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF-G--EGVGAVETSDDAARAAAIK----   96 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc-C--CcEEEeeCCCHHHHHHHHh----
Confidence            36789999999999999999999999999999999999888877776664332 2  2345678888888776664    


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                         ..|++|++....
T Consensus        97 ---~~diVi~at~~g  108 (194)
T cd01078          97 ---GADVVFAAGAAG  108 (194)
T ss_pred             ---cCCEEEECCCCC
Confidence               358888877643

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR01746 Thioester-redct thioester reductase domain

Probab=98.92  E-value=1.2e-08  Score=75.04  Aligned_cols=87  Identities=20%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhH---HHHHHHHhcCC-----C-CeeEEEEecCCCHHH--HHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGR---DVKVAIVMQNP-----A-AKVDVMELDLSSLAS--VRK   92 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~---~~~~~l~~~~~-----~-~~~~~~~~D~~~~~~--~~~   92 (138)
                      +++||||+|+||..+++.|+++|  ++|+++.|+.+...   .+.+.+.....     . .++.++.+|++++..  -..
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            47999999999999999999998  68999999865321   22222221100     1 468899999986521  011


Q ss_pred             HHHHHHhcCCCccEEEECcccCC
Q 042455           93 FASDFTARALPLNILINKAGICG  115 (138)
Q Consensus        93 ~~~~~~~~~~~id~lv~~ag~~~  115 (138)
                      ....+.   ..+|++||||+...
T Consensus        81 ~~~~~~---~~~d~vih~a~~~~  100 (367)
T TIGR01746        81 EWERLA---ENVDTIVHNGALVN  100 (367)
T ss_pred             HHHHHH---hhCCEEEeCCcEec
Confidence            112222   36899999999653

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.91  E-value=2.8e-09  Score=76.97  Aligned_cols=94  Identities=23%  Similarity=0.235  Sum_probs=67.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      +||||++|.||..++++|+++|++|..++|.........         ..+.++.+|+++.+.+..+++..     + |.
T Consensus         3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~-----~-d~   67 (314)
T COG0451           3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKGV-----P-DA   67 (314)
T ss_pred             EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhcC-----C-CE
Confidence            999999999999999999999999999999776543322         24678899999885555444432     1 99


Q ss_pred             EEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          107 LINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       107 lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +||+|+.......... .....+.+|+.++
T Consensus        68 vih~aa~~~~~~~~~~-~~~~~~~~nv~gt   96 (314)
T COG0451          68 VIHLAAQSSVPDSNAS-DPAEFLDVNVDGT   96 (314)
T ss_pred             EEEccccCchhhhhhh-CHHHHHHHHHHHH
Confidence            9999997643222211 3345666676654

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=98.88  E-value=6e-09  Score=75.39  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +|||||+|.||..+++.|.++|+ .|++++|..... . ...+     ..  ..+..|+++.+.++.+.+.   .+.++|
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~-~~~~-----~~--~~~~~d~~~~~~~~~~~~~---~~~~~D   68 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-K-FLNL-----AD--LVIADYIDKEDFLDRLEKG---AFGKIE   68 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-h-hhhh-----hh--eeeeccCcchhHHHHHHhh---ccCCCC
Confidence            58999999999999999999998 788887654321 1 1111     11  2456788887776665553   346799


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++||+|+....    +.++....+++|+.++
T Consensus        69 ~vvh~A~~~~~----~~~~~~~~~~~n~~~~   95 (314)
T TIGR02197        69 AIFHQGACSDT----TETDGEYMMENNYQYS   95 (314)
T ss_pred             EEEECccccCc----cccchHHHHHHHHHHH
Confidence            99999996431    2234456677777654

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK05865 hypothetical protein; Provisional

Probab=98.87  E-value=1.1e-08  Score=82.92  Aligned_cols=72  Identities=22%  Similarity=0.266  Sum_probs=59.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|.||.++++.|+++|++|++++|+....      +     ...+.++.+|++|.+++.++++       .+|
T Consensus         2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~-----~~~v~~v~gDL~D~~~l~~al~-------~vD   63 (854)
T PRK05865          2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W-----PSSADFIAADIRDATAVESAMT-------GAD   63 (854)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c-----ccCceEEEeeCCCHHHHHHHHh-------CCC
Confidence            589999999999999999999999999999874321      1     1246788999999999887775       379


Q ss_pred             EEEECcccCC
Q 042455          106 ILINKAGICG  115 (138)
Q Consensus       106 ~lv~~ag~~~  115 (138)
                      ++||+|+...
T Consensus        64 ~VVHlAa~~~   73 (854)
T PRK05865         64 VVAHCAWVRG   73 (854)
T ss_pred             EEEECCCccc
Confidence            9999998643

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.86  E-value=2e-08  Score=75.25  Aligned_cols=78  Identities=21%  Similarity=0.331  Sum_probs=61.0

Q ss_pred             CCCCCEEEEeCC---------------CCc-hHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           21 DAAGVTAIVTGA---------------SSG-IGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        21 ~~~~k~~litG~---------------~~~-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      +++||+++||||               ++| +|.++|+.+..+|++|++++++....          . ...  ...+|+
T Consensus       182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~----------~-~~~--~~~~~v  248 (390)
T TIGR00521       182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL----------T-PPG--VKSIKV  248 (390)
T ss_pred             ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC----------C-CCC--cEEEEe
Confidence            488999999999               556 99999999999999999988765321          1 111  246899


Q ss_pred             CCHHHH-HHHHHHHHhcCCCccEEEECcccC
Q 042455           85 SSLASV-RKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        85 ~~~~~~-~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      ++.+++ ++++++.   ++++|++|+|||+.
T Consensus       249 ~~~~~~~~~~~~~~---~~~~D~~i~~Aavs  276 (390)
T TIGR00521       249 STAEEMLEAALNEL---AKDFDIFISAAAVA  276 (390)
T ss_pred             ccHHHHHHHHHHhh---cccCCEEEEccccc
Confidence            999988 6666453   46799999999986

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=98.85  E-value=7.8e-09  Score=73.87  Aligned_cols=80  Identities=30%  Similarity=0.409  Sum_probs=64.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      +||||++|-+|.++++.|. .+++|+.++|..                       +|++|.+.+.+++.+.     ++|+
T Consensus         3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~~~v~~~i~~~-----~PDv   53 (281)
T COG1091           3 ILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDPDAVLEVIRET-----RPDV   53 (281)
T ss_pred             EEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccChHHHHHHHHhh-----CCCE
Confidence            8999999999999999999 667899888743                       8999999999999986     7999


Q ss_pred             EEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          107 LINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       107 lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +||+|++..  .+.-+.+-+..+.+|..|+.
T Consensus        54 VIn~AAyt~--vD~aE~~~e~A~~vNa~~~~   82 (281)
T COG1091          54 VINAAAYTA--VDKAESEPELAFAVNATGAE   82 (281)
T ss_pred             EEECccccc--cccccCCHHHHHHhHHHHHH
Confidence            999999753  22223334668888887753

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=98.84  E-value=5.7e-09  Score=75.26  Aligned_cols=81  Identities=31%  Similarity=0.409  Sum_probs=57.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++||||++|-||.++.+.|.+.|++++.++|.                       .+|++|.+.+.+++++.     ++|
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~-----~pd   53 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAF-----KPD   53 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH-------S
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHh-----CCC
Confidence            58999999999999999999999999888775                       67999999999999886     589


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++||+||...+  +.-+++-+..+.+|+.++
T Consensus        54 ~Vin~aa~~~~--~~ce~~p~~a~~iN~~~~   82 (286)
T PF04321_consen   54 VVINCAAYTNV--DACEKNPEEAYAINVDAT   82 (286)
T ss_dssp             EEEE------H--HHHHHSHHHHHHHHTHHH
T ss_pred             eEeccceeecH--HhhhhChhhhHHHhhHHH
Confidence            99999997421  111223345666676554

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.83  E-value=1.6e-08  Score=77.08  Aligned_cols=99  Identities=19%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -.++++|||||+|.||..+++.|+++|++|+++++......+.....   ....++.++..|+.+..     +       
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~---~~~~~~~~i~~D~~~~~-----l-------  181 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH---FSNPNFELIRHDVVEPI-----L-------  181 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh---ccCCceEEEECCccChh-----h-------
Confidence            35689999999999999999999999999999887533222211111   11235677788886542     1       


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ..+|+|||+|+...+...  .++..+.+++|+.|+.
T Consensus       182 ~~~D~ViHlAa~~~~~~~--~~~p~~~~~~Nv~gt~  215 (442)
T PLN02206        182 LEVDQIYHLACPASPVHY--KFNPVKTIKTNVVGTL  215 (442)
T ss_pred             cCCCEEEEeeeecchhhh--hcCHHHHHHHHHHHHH
Confidence            248999999986543111  1123456777776653

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.80  E-value=6.9e-09  Score=73.72  Aligned_cols=106  Identities=15%  Similarity=0.181  Sum_probs=76.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhc--CCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQ--NPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +|++||||-+|-=|..+|+.|+++|+.|+.+.|.........-.|...  ..+.+++++.+|++|...+.++++++    
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v----   77 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV----   77 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc----
Confidence            689999999999999999999999999999988643322111022111  11455889999999999999999987    


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                       .+|-+.|-++-.  +...|.++-..+.+++..|+
T Consensus        78 -~PdEIYNLaAQS--~V~vSFe~P~~T~~~~~iGt  109 (345)
T COG1089          78 -QPDEIYNLAAQS--HVGVSFEQPEYTADVDAIGT  109 (345)
T ss_pred             -Cchhheeccccc--cccccccCcceeeeechhHH
Confidence             689999998854  23334444444555555444

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.80  E-value=5.7e-08  Score=68.03  Aligned_cols=95  Identities=13%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             EEEEeCCCC-chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASS-GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~-~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +-.||+.++ .+|.++|+.|+++|++|++++|+....        .. +...+.++.++  +.+++   .+.+.+.++.+
T Consensus        17 VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~--------~~-~~~~v~~i~v~--s~~~m---~~~l~~~~~~~   82 (229)
T PRK06732         17 VRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK--------PE-PHPNLSIIEIE--NVDDL---LETLEPLVKDH   82 (229)
T ss_pred             ceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc--------CC-CCCCeEEEEEe--cHHHH---HHHHHHHhcCC
Confidence            456776665 599999999999999999998764210        00 01234444432  22332   23333334578


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHL  134 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~  134 (138)
                      |++|||||+..  +....+.++|.+++++|.+
T Consensus        83 DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~  114 (229)
T PRK06732         83 DVLIHSMAVSDYTPVYMTDLEEVSASDNLNEF  114 (229)
T ss_pred             CEEEeCCccCCceehhhhhhhhhhhhhhhhhh
Confidence            99999999863  3345678888998888754

>PLN02778 3,5-epimerase/4-reductase

Probab=98.79  E-value=3.7e-08  Score=71.45  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=56.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +++|||||+|.||..+++.|+++|++|.+..                          .|+.+.+.+...++..     ++
T Consensus        10 ~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~--------------------------~~~~~~~~v~~~l~~~-----~~   58 (298)
T PLN02778         10 LKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS--------------------------GRLENRASLEADIDAV-----KP   58 (298)
T ss_pred             CeEEEECCCCHHHHHHHHHHHhCCCEEEEec--------------------------CccCCHHHHHHHHHhc-----CC
Confidence            5799999999999999999999999886422                          2334555555555432     68


Q ss_pred             cEEEECcccCCCCC-ccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPF-MLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~-~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++||+||..+... +...+.-.+.+++|+.|+.
T Consensus        59 D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~   92 (298)
T PLN02778         59 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTL   92 (298)
T ss_pred             CEEEECCcccCCCCchhhhhCHHHHHHHHHHHHH
Confidence            99999999764321 1122334567778877653

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.77  E-value=3.7e-08  Score=74.95  Aligned_cols=96  Identities=18%  Similarity=0.227  Sum_probs=64.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ..++++||||+|.||..+++.|+++|++|++++|...........+.   ...++.++..|+.+..     +       .
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~---~~~~~~~~~~Di~~~~-----~-------~  183 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF---GNPRFELIRHDVVEPI-----L-------L  183 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc---cCCceEEEECcccccc-----c-------c
Confidence            34689999999999999999999999999999886432222111111   1234677788886532     1       2


Q ss_pred             CccEEEECcccCCCCC-ccCHHHHHHHhhhccccc
Q 042455          103 PLNILINKAGICGTPF-MLSKDNIELHFATNHLGA  136 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~-~~~~~~~~~~~~~n~~g~  136 (138)
                      ++|+|||+|+...+.. ..+   -...+++|+.|+
T Consensus       184 ~~D~ViHlAa~~~~~~~~~~---p~~~~~~Nv~gT  215 (436)
T PLN02166        184 EVDQIYHLACPASPVHYKYN---PVKTIKTNVMGT  215 (436)
T ss_pred             CCCEEEECceeccchhhccC---HHHHHHHHHHHH
Confidence            5899999998654321 122   245667777665

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.76  E-value=4.1e-08  Score=70.24  Aligned_cols=90  Identities=18%  Similarity=0.094  Sum_probs=57.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      +|||||+|.||..+++.|+++|++|++++|+.+......        ..  .  ..|+.. .       .....+..+|+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~--~--~~~~~~-~-------~~~~~~~~~D~   60 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK--------WE--G--YKPWAP-L-------AESEALEGADA   60 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc--------ce--e--eecccc-c-------chhhhcCCCCE
Confidence            589999999999999999999999999999876533211        00  0  112221 1       11223457999


Q ss_pred             EEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          107 LINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       107 lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +||+||........+.+.....+++|+.++
T Consensus        61 Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~   90 (292)
T TIGR01777        61 VINLAGEPIADKRWTEERKQEIRDSRIDTT   90 (292)
T ss_pred             EEECCCCCcccccCCHHHHHHHHhcccHHH
Confidence            999999643222233344455666666543

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02996 fatty acyl-CoA reductase

Probab=98.75  E-value=7.2e-08  Score=74.41  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=67.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC---EEEEEecCcch---hHHHHHH---------HHhcCC-------CCeeEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV---HVIMADRNMAA---GRDVKVA---------IVMQNP-------AAKVDV   79 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~---~v~~~~r~~~~---~~~~~~~---------l~~~~~-------~~~~~~   79 (138)
                      +.+|+++||||+|.||..++++|+..+.   +|+++.|....   .+.+..+         ++...+       ..++.+
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            6799999999999999999999997542   68888886531   1111111         111111       146899


Q ss_pred             EEecCCC-------HHHHHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           80 MELDLSS-------LASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        80 ~~~D~~~-------~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +..|+++       .+.++.+++       .+|++||+|+.....     +.....+.+|+.|+
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~~-----~~~~~~~~~Nv~gt  140 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNFD-----ERYDVALGINTLGA  140 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCCc-----CCHHHHHHHHHHHH
Confidence            9999984       333444433       489999999975421     23455677777665

>PLN02503 fatty acyl-CoA reductase 2

Probab=98.73  E-value=1.5e-07  Score=74.08  Aligned_cols=103  Identities=12%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC---EEEEEecCcch--h-HHHHHH---------HHhcCC-------CCeeEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV---HVIMADRNMAA--G-RDVKVA---------IVMQNP-------AAKVDV   79 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~---~v~~~~r~~~~--~-~~~~~~---------l~~~~~-------~~~~~~   79 (138)
                      +.+|+++||||+|.||..++++|+..+.   +|+++.|....  . +.+..+         +++..+       ..++.+
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            4799999999999999999999998643   68888885432  2 122112         222222       246899


Q ss_pred             EEecCCCHH------HHHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           80 MELDLSSLA------SVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        80 ~~~D~~~~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +..|++++.      ..+.+.+       .+|++||+|+....  +   +.++..+++|+.|+
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~-------~vDiVIH~AA~v~f--~---~~~~~a~~vNV~GT  247 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAK-------EVDVIINSAANTTF--D---ERYDVAIDINTRGP  247 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHh-------cCCEEEECcccccc--c---cCHHHHHHHHHHHH
Confidence            999999873      3333222       48999999996531  1   23455677777664

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.72  E-value=4.1e-08  Score=70.43  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=58.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC-c
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP-L  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~-i  104 (138)
                      +++||||+|.+|..++++|++.|++|.++.|++++...           ..+....+|+.|.+++..+++.. ..+.. +
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~   68 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG-----------PNEKHVKFDWLDEDTWDNPFSSD-DGMEPEI   68 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC-----------CCCccccccCCCHHHHHHHHhcc-cCcCCce
Confidence            37999999999999999999999999999998765321           12445678999999988887643 22334 8


Q ss_pred             cEEEECccc
Q 042455          105 NILINKAGI  113 (138)
Q Consensus       105 d~lv~~ag~  113 (138)
                      |.++++++.
T Consensus        69 d~v~~~~~~   77 (285)
T TIGR03649        69 SAVYLVAPP   77 (285)
T ss_pred             eEEEEeCCC
Confidence            888887764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=98.68  E-value=3.1e-08  Score=71.46  Aligned_cols=60  Identities=25%  Similarity=0.290  Sum_probs=49.7

Q ss_pred             EEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 042455           28 IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNIL  107 (138)
Q Consensus        28 litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l  107 (138)
                      |||||+|.||..+++.|++.|+.|+++.+.                      ..+|+++.++++++++..     ++|+|
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~~~l~~~~~~~-----~~d~V   53 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQADVEAFFAKE-----KPTYV   53 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCHHHHHHHHhcc-----CCCEE
Confidence            689999999999999999999887665421                      147999999988887762     58999


Q ss_pred             EECcccC
Q 042455          108 INKAGIC  114 (138)
Q Consensus       108 v~~ag~~  114 (138)
                      ||+|+..
T Consensus        54 ih~A~~~   60 (306)
T PLN02725         54 ILAAAKV   60 (306)
T ss_pred             EEeeeee
Confidence            9999974

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.67  E-value=1.8e-07  Score=74.31  Aligned_cols=83  Identities=19%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             EEEEeCCCCchHHHHHHHHH--HCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHH--HHHHHHHHhcC
Q 042455           26 TAIVTGASSGIGAETTRVLA--LRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASV--RKFASDFTARA  101 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~--~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~--~~~~~~~~~~~  101 (138)
                      ++|||||+|.||..+++.|+  ..|++|++++|+... .. ...+.......++.++.+|+++++..  ...++.+    
T Consensus         2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~-~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l----   75 (657)
T PRK07201          2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SR-LEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL----   75 (657)
T ss_pred             eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HH-HHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh----
Confidence            69999999999999999999  478999999996533 11 12222221124688899999985310  1122222    


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                      .++|++||+||..
T Consensus        76 ~~~D~Vih~Aa~~   88 (657)
T PRK07201         76 GDIDHVVHLAAIY   88 (657)
T ss_pred             cCCCEEEECceee
Confidence            3689999999964

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=98.64  E-value=1.9e-07  Score=77.05  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=96.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchh---HHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAG---RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~---~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      ++...|.++|+||-||.|++++.+|.++|+ .+++++|+.-+.   ...+..++.+  +.++..-..|++..+....+++
T Consensus      1764 ~~hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~--GVqV~vsT~nitt~~ga~~Li~ 1841 (2376)
T KOG1202|consen 1764 YCHPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRR--GVQVQVSTSNITTAEGARGLIE 1841 (2376)
T ss_pred             hcCccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhc--CeEEEEecccchhhhhHHHHHH
Confidence            345689999999999999999999999999 589999986553   2345556555  7888888899999999999998


Q ss_pred             HHHhcCCCccEEEECcccCCC--CCccCHHHHHHHhhhccccccC
Q 042455           96 DFTARALPLNILINKAGICGT--PFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +. ++++.+-+++|-|.+.++  ..+.++++|.++-+..+.|+.+
T Consensus      1842 ~s-~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~ 1885 (2376)
T KOG1202|consen 1842 ES-NKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTIN 1885 (2376)
T ss_pred             Hh-hhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeee
Confidence            84 578999999999999864  5578999999998888887753

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.63  E-value=2.4e-07  Score=69.11  Aligned_cols=77  Identities=26%  Similarity=0.434  Sum_probs=64.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++||.|+ |++|+.+|+.|++.| .+|.+++|+.++..++....     ..++.+.++|+.|.+.+.+++++       
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~-------   68 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALIKD-------   68 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHHhc-------
Confidence            56899999 999999999999999 79999999988877655432     34789999999999998888775       


Q ss_pred             ccEEEECcccC
Q 042455          104 LNILINKAGIC  114 (138)
Q Consensus       104 id~lv~~ag~~  114 (138)
                      .|++||++...
T Consensus        69 ~d~VIn~~p~~   79 (389)
T COG1748          69 FDLVINAAPPF   79 (389)
T ss_pred             CCEEEEeCCch
Confidence            29999998753

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.63  E-value=1.6e-07  Score=69.47  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=70.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++.+++||||+|-+|+.++++|++.+  ..+.+++..+.......... .. ...++..+++|+.|..++.+.++    
T Consensus         2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~-~~-~~~~v~~~~~D~~~~~~i~~a~~----   75 (361)
T KOG1430|consen    2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT-GF-RSGRVTVILGDLLDANSISNAFQ----   75 (361)
T ss_pred             CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh-cc-cCCceeEEecchhhhhhhhhhcc----
Confidence            457899999999999999999999988  58888888664211111111 10 15678999999999888877766    


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                         .. .+||+|....+....  .+-+..+++|+.|+
T Consensus        76 ---~~-~Vvh~aa~~~~~~~~--~~~~~~~~vNV~gT  106 (361)
T KOG1430|consen   76 ---GA-VVVHCAASPVPDFVE--NDRDLAMRVNVNGT  106 (361)
T ss_pred             ---Cc-eEEEeccccCccccc--cchhhheeecchhH
Confidence               34 667777654322211  13456777888774

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=98.60  E-value=1.3e-07  Score=66.81  Aligned_cols=96  Identities=20%  Similarity=0.178  Sum_probs=53.5

Q ss_pred             EeCCCCchHHHHHHHHHHCCC--EEEEEecCcch---hHHHHHHHHhcC--------CCCeeEEEEecCCCHH------H
Q 042455           29 VTGASSGIGAETTRVLALRGV--HVIMADRNMAA---GRDVKVAIVMQN--------PAAKVDVMELDLSSLA------S   89 (138)
Q Consensus        29 itG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~---~~~~~~~l~~~~--------~~~~~~~~~~D~~~~~------~   89 (138)
                      ||||+|.||..+.++|++++.  +|+++.|....   .+.+.+.+....        ...++.++.+|++++.      .
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999875  89999997643   222211111110        0468999999999753      3


Q ss_pred             HHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           90 VRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      .+.+.+       .+|++||||+...-..     .+.+..++|+.|+
T Consensus        81 ~~~L~~-------~v~~IiH~Aa~v~~~~-----~~~~~~~~NV~gt  115 (249)
T PF07993_consen   81 YQELAE-------EVDVIIHCAASVNFNA-----PYSELRAVNVDGT  115 (249)
T ss_dssp             HHHHHH-------H--EEEE--SS-SBS------S--EEHHHHHHHH
T ss_pred             hhcccc-------ccceeeecchhhhhcc-----cchhhhhhHHHHH
Confidence            344433       3799999999653111     2233555666554

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.59  E-value=6e-07  Score=57.89  Aligned_cols=78  Identities=18%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++++++|.|+ ||.|+++++.|.+.|+ +|.++.|+.++++++...+.    +..+.....+  +   +...+     
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~----~~~~~~~~~~--~---~~~~~-----   73 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG----GVNIEAIPLE--D---LEEAL-----   73 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT----GCSEEEEEGG--G---HCHHH-----
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC----ccccceeeHH--H---HHHHH-----
Confidence            688999999998 8999999999999998 59999999999888887761    3334444432  2   22222     


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                        ...|++|++.+...
T Consensus        74 --~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 --QEADIVINATPSGM   87 (135)
T ss_dssp             --HTESEEEE-SSTTS
T ss_pred             --hhCCeEEEecCCCC
Confidence              25799999998754

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.56  E-value=4.6e-07  Score=69.09  Aligned_cols=77  Identities=14%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++|+|+++ +|.++|+.|++.|++|.+++++. +..++...++...    .+.++..|..+            +
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~------------~   64 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPE------------E   64 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcch------------h
Confidence            57899999999877 99999999999999999999975 3444444445332    24567777765            1


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                      ..+.+|++|+++|+.
T Consensus        65 ~~~~~d~vv~~~g~~   79 (450)
T PRK14106         65 FLEGVDLVVVSPGVP   79 (450)
T ss_pred             HhhcCCEEEECCCCC
Confidence            124689999999974

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.54  E-value=3.3e-07  Score=68.64  Aligned_cols=76  Identities=28%  Similarity=0.459  Sum_probs=59.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCC-C-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           27 AIVTGASSGIGAETTRVLALRG-V-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g-~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+|.|+ |.+|..+++.|++.+ . +|++.+|+.+++++...++    ...++...++|+.|.+++.+++++       -
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~-------~   68 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAELLRG-------C   68 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHHHTT-------S
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHHHhc-------C
Confidence            689999 999999999999986 4 8999999999988877654    257899999999999998888764       4


Q ss_pred             cEEEECcccC
Q 042455          105 NILINKAGIC  114 (138)
Q Consensus       105 d~lv~~ag~~  114 (138)
                      |++||++|..
T Consensus        69 dvVin~~gp~   78 (386)
T PF03435_consen   69 DVVINCAGPF   78 (386)
T ss_dssp             SEEEE-SSGG
T ss_pred             CEEEECCccc
Confidence            9999999853

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=98.53  E-value=1.2e-06  Score=61.20  Aligned_cols=75  Identities=20%  Similarity=0.223  Sum_probs=57.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      ++|+||+|.+|+.+++.|++.+++|.++.|+...  ...+.++..  +  +..+.+|+.|.+++.++++       .+|.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~--~~~~~l~~~--g--~~vv~~d~~~~~~l~~al~-------g~d~   67 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS--DRAQQLQAL--G--AEVVEADYDDPESLVAALK-------GVDA   67 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH--HHHHHHHHT--T--TEEEES-TT-HHHHHHHHT-------TCSE
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch--hhhhhhhcc--c--ceEeecccCCHHHHHHHHc-------CCce
Confidence            6899999999999999999999999999998733  233444433  3  3566999999998877776       5799


Q ss_pred             EEECcccC
Q 042455          107 LINKAGIC  114 (138)
Q Consensus       107 lv~~ag~~  114 (138)
                      ++.+.+..
T Consensus        68 v~~~~~~~   75 (233)
T PF05368_consen   68 VFSVTPPS   75 (233)
T ss_dssp             EEEESSCS
T ss_pred             EEeecCcc
Confidence            99888854

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.52  E-value=4.7e-07  Score=72.28  Aligned_cols=83  Identities=16%  Similarity=0.199  Sum_probs=60.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .+++||||++|-||.++++.|.++|++|..                          ...|++|.+.+.+++...     +
T Consensus       380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~--------------------------~~~~l~d~~~v~~~i~~~-----~  428 (668)
T PLN02260        380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEY--------------------------GKGRLEDRSSLLADIRNV-----K  428 (668)
T ss_pred             CceEEEECCCchHHHHHHHHHHhCCCeEEe--------------------------eccccccHHHHHHHHHhh-----C
Confidence            347999999999999999999999987621                          113577888887777653     6


Q ss_pred             ccEEEECcccCCCC-CccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGTP-FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~~-~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+|||+|+..+.. .+...++-...+++|+.|+.
T Consensus       429 pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~  463 (668)
T PLN02260        429 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTL  463 (668)
T ss_pred             CCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHH
Confidence            89999999976432 22333445677888887753

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=98.49  E-value=1.2e-06  Score=62.70  Aligned_cols=84  Identities=26%  Similarity=0.283  Sum_probs=68.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+|-++-+.||+|.+|+.++.+|++.|..|++=+|..+.-   ..+++....-+++.++..|+.|+++++++++..    
T Consensus        59 ~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~---~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~s----  131 (391)
T KOG2865|consen   59 VSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYD---PRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHS----  131 (391)
T ss_pred             ccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccc---hhheeecccccceeeeccCCCCHHHHHHHHHhC----
Confidence            5667888999999999999999999999999998865431   223333333478999999999999999998864    


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                         +++||..|.-.
T Consensus       132 ---NVVINLIGrd~  142 (391)
T KOG2865|consen  132 ---NVVINLIGRDY  142 (391)
T ss_pred             ---cEEEEeecccc
Confidence               89999999753

>PLN00016 RNA-binding protein; Provisional

Probab=98.45  E-value=9.6e-07  Score=65.98  Aligned_cols=79  Identities=16%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             CCCCEEEEe----CCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH-------HHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           22 AAGVTAIVT----GASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK-------VAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        22 ~~~k~~lit----G~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~-------~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      ...++++||    ||+|.||..+++.|+++|++|.+++|+........       .++.    ...+.++.+|+.|   +
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~----~~~v~~v~~D~~d---~  122 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS----SAGVKTVWGDPAD---V  122 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh----hcCceEEEecHHH---H
Confidence            345789999    99999999999999999999999999865432110       1111    1226677777755   3


Q ss_pred             HHHHHHHHhcCCCccEEEECcc
Q 042455           91 RKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..++.     ...+|++|++++
T Consensus       123 ~~~~~-----~~~~d~Vi~~~~  139 (378)
T PLN00016        123 KSKVA-----GAGFDVVYDNNG  139 (378)
T ss_pred             Hhhhc-----cCCccEEEeCCC
Confidence            22221     135777777765

>PRK12320 hypothetical protein; Provisional

Probab=98.41  E-value=1.6e-06  Score=69.20  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|.||..+++.|+++|++|++++|....       .  .  ...+.++.+|+++.. +.+++       .++|
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~-------~--~--~~~ve~v~~Dl~d~~-l~~al-------~~~D   62 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD-------A--L--DPRVDYVCASLRNPV-LQELA-------GEAD   62 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh-------c--c--cCCceEEEccCCCHH-HHHHh-------cCCC
Confidence            59999999999999999999999999999986432       0  0  234678899999873 33332       2589


Q ss_pred             EEEECcccC
Q 042455          106 ILINKAGIC  114 (138)
Q Consensus       106 ~lv~~ag~~  114 (138)
                      ++||+|+..
T Consensus        63 ~VIHLAa~~   71 (699)
T PRK12320         63 AVIHLAPVD   71 (699)
T ss_pred             EEEEcCccC
Confidence            999999864

>PRK09620 hypothetical protein; Provisional

Probab=98.38  E-value=1e-06  Score=61.70  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=51.2

Q ss_pred             CCCCEEEEeCCC----------------CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC
Q 042455           22 AAGVTAIVTGAS----------------SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        22 ~~~k~~litG~~----------------~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      |.||++|||+|.                |-+|.++|+.|+.+|++|+++++.......   .+   .+...+..+..+. 
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~---~~~~~~~~V~s~~-   73 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DI---NNQLELHPFEGII-   73 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---cc---CCceeEEEEecHH-
Confidence            468999999886                889999999999999999988764221110   00   0012233333322 


Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           86 SLASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                         ++...+.++... .++|++||+|++.
T Consensus        74 ---d~~~~l~~~~~~-~~~D~VIH~AAvs   98 (229)
T PRK09620         74 ---DLQDKMKSIITH-EKVDAVIMAAAGS   98 (229)
T ss_pred             ---HHHHHHHHHhcc-cCCCEEEECcccc
Confidence               222233333321 2589999999985

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.32  E-value=4.2e-06  Score=61.44  Aligned_cols=82  Identities=18%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHH----CCCEEEEEecCcchhHHHHHHHHhcCCC--CeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           26 TAIVTGASSGIGAETTRVLAL----RGVHVIMADRNMAAGRDVKVAIVMQNPA--AKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~----~g~~v~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      -++|-||+|--|..++.++.+    .|..+.+.+||++++++......+..+.  .....+-||.+|++++..+..+.  
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~--   84 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQA--   84 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhh--
Confidence            478999999999999999998    6889999999999999988877655421  22337889999999999998875  


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                           .++|||+|..
T Consensus        85 -----~vivN~vGPy   94 (423)
T KOG2733|consen   85 -----RVIVNCVGPY   94 (423)
T ss_pred             -----EEEEeccccc
Confidence                 7999999975

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.29  E-value=5.6e-06  Score=58.66  Aligned_cols=73  Identities=29%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      .++||||+|.+|..++++|++.|++|.+..|+.+++....         ..+.+...|+.++..+...++       .++
T Consensus         2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~-------G~~   65 (275)
T COG0702           2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGAK-------GVD   65 (275)
T ss_pred             eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHhc-------ccc
Confidence            5899999999999999999999999999999988766533         346788889998888777665       357


Q ss_pred             EEEECcccC
Q 042455          106 ILINKAGIC  114 (138)
Q Consensus       106 ~lv~~ag~~  114 (138)
                      .+++..+..
T Consensus        66 ~~~~i~~~~   74 (275)
T COG0702          66 GVLLISGLL   74 (275)
T ss_pred             EEEEEeccc
Confidence            776666643

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.28  E-value=4.4e-06  Score=61.61  Aligned_cols=74  Identities=20%  Similarity=0.295  Sum_probs=53.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHC-CC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALR-GV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~-g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++|+++||||+|.||..+|++|+.+ |. +++++.|+.+++.++..++.           ..++.   ++.+      
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~-----------~~~i~---~l~~------  211 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG-----------GGKIL---SLEE------  211 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc-----------cccHH---hHHH------
Confidence            688999999999999999999999864 64 89999998877766554431           11222   2222      


Q ss_pred             hcCCCccEEEECcccCC
Q 042455           99 ARALPLNILINKAGICG  115 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~  115 (138)
                       .+...|++|+.++...
T Consensus       212 -~l~~aDiVv~~ts~~~  227 (340)
T PRK14982        212 -ALPEADIVVWVASMPK  227 (340)
T ss_pred             -HHccCCEEEECCcCCc
Confidence             2235799999998743

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.23  E-value=1.6e-05  Score=58.94  Aligned_cols=83  Identities=23%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcc--h-hHHHHHHHH-----hcCCCCeeEEEEecCCCH------HH
Q 042455           25 VTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMA--A-GRDVKVAIV-----MQNPAAKVDVMELDLSSL------AS   89 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~--~-~~~~~~~l~-----~~~~~~~~~~~~~D~~~~------~~   89 (138)
                      +++++|||+|-||..+...|+.+ ..+|++.-|-++  . ...+.+.+.     ......++..+..|++.+      ..
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            47899999999999999999976 459999888544  2 222222222     111157899999999843      33


Q ss_pred             HHHHHHHHHhcCCCccEEEECcccC
Q 042455           90 VRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      ...+.+       .+|.+|||++..
T Consensus        81 ~~~La~-------~vD~I~H~gA~V   98 (382)
T COG3320          81 WQELAE-------NVDLIIHNAALV   98 (382)
T ss_pred             HHHHhh-------hcceEEecchhh
Confidence            444443       479999999975

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=98.20  E-value=4e-06  Score=59.96  Aligned_cols=99  Identities=14%  Similarity=0.222  Sum_probs=65.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ...+++++||||+|.||..+|.+|..+|..|++++.-...........   .....+..+.-|+..+     ++.+    
T Consensus        24 p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~---~~~~~fel~~hdv~~p-----l~~e----   91 (350)
T KOG1429|consen   24 PSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHW---IGHPNFELIRHDVVEP-----LLKE----   91 (350)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchh---ccCcceeEEEeechhH-----HHHH----
Confidence            456799999999999999999999999999999876443322222211   2234566666676544     4443    


Q ss_pred             CCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         +|.++|.|...+| .+..++   .+++.+|+.++.
T Consensus        92 ---vD~IyhLAapasp~~y~~np---vktIktN~igtl  123 (350)
T KOG1429|consen   92 ---VDQIYHLAAPASPPHYKYNP---VKTIKTNVIGTL  123 (350)
T ss_pred             ---hhhhhhhccCCCCcccccCc---cceeeecchhhH
Confidence               5888998887654 344443   235666666553

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=98.17  E-value=3.4e-06  Score=59.98  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=33.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      ++||||+|-||.+++..|.+.|..|.++.|++.+...
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~   37 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQ   37 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhh
Confidence            5899999999999999999999999999999877543

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.16  E-value=8.1e-06  Score=62.27  Aligned_cols=78  Identities=14%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.+|+++|||+++ +|.++|+.|++.|++|++.+++..........+...  +.+  +....  +...+   +.     
T Consensus         2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~--g~~--~~~~~--~~~~~---~~-----   66 (447)
T PRK02472          2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEE--GIK--VICGS--HPLEL---LD-----   66 (447)
T ss_pred             CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhc--CCE--EEeCC--CCHHH---hc-----
Confidence            46789999999976 999999999999999999988765444444445433  322  22211  11111   11     


Q ss_pred             CCCccEEEECcccC
Q 042455          101 ALPLNILINKAGIC  114 (138)
Q Consensus       101 ~~~id~lv~~ag~~  114 (138)
                       ..+|++|+++|+.
T Consensus        67 -~~~d~vV~s~gi~   79 (447)
T PRK02472         67 -EDFDLMVKNPGIP   79 (447)
T ss_pred             -CcCCEEEECCCCC
Confidence             1489999999985

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=98.14  E-value=5.2e-06  Score=63.24  Aligned_cols=107  Identities=20%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCC--C-EEEEEecCcc--hh---------HHHHHHHHhcCCC--CeeEEEEecCC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRG--V-HVIMADRNMA--AG---------RDVKVAIVMQNPA--AKVDVMELDLS   85 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g--~-~v~~~~r~~~--~~---------~~~~~~l~~~~~~--~~~~~~~~D~~   85 (138)
                      +.+|+++||||+|.+|+-++.+|+..-  . ++++.-|...  ..         +.+.+.+++..|.  .++..+.+|++
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            679999999999999999999999752  2 7888776431  11         1223333444332  67888899998


Q ss_pred             CHHHH-H-HHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           86 SLASV-R-KFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        86 ~~~~~-~-~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +++-- + .-.+.+.   ..+|++||+|+-.+     -.|-++..+.+|..|+
T Consensus        90 ~~~LGis~~D~~~l~---~eV~ivih~AAtvr-----Fde~l~~al~iNt~Gt  134 (467)
T KOG1221|consen   90 EPDLGISESDLRTLA---DEVNIVIHSAATVR-----FDEPLDVALGINTRGT  134 (467)
T ss_pred             CcccCCChHHHHHHH---hcCCEEEEeeeeec-----cchhhhhhhhhhhHhH
Confidence            65421 1 1111111   36899999999543     1233455666777664

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.13  E-value=2.8e-05  Score=50.87  Aligned_cols=76  Identities=14%  Similarity=0.306  Sum_probs=55.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++++++|+|+ +++|.++++.|.+.| .+|.+++|+.++.++..+++....       +..+.++.++.         
T Consensus        16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---------   78 (155)
T cd01065          16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-------IAIAYLDLEEL---------   78 (155)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-------cceeecchhhc---------
Confidence            467889999998 799999999999986 689999999888777666553210       12233333322         


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                       ....|++|+++...
T Consensus        79 -~~~~Dvvi~~~~~~   92 (155)
T cd01065          79 -LAEADLIINTTPVG   92 (155)
T ss_pred             -cccCCEEEeCcCCC
Confidence             24689999999864

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.04  E-value=5.3e-05  Score=54.30  Aligned_cols=75  Identities=15%  Similarity=0.290  Sum_probs=54.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..+|+++|+|+ ||+|+++++.|++.|++|.+++|+.++.+++.+.+...  + .+.....+     ..         ..
T Consensus       115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~--~-~~~~~~~~-----~~---------~~  176 (270)
T TIGR00507       115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY--G-EIQAFSMD-----EL---------PL  176 (270)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc--C-ceEEechh-----hh---------cc
Confidence            45789999999 69999999999999999999999988887777665432  1 12222111     10         12


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                      ...|++||+.+..
T Consensus       177 ~~~DivInatp~g  189 (270)
T TIGR00507       177 HRVDLIINATSAG  189 (270)
T ss_pred             cCccEEEECCCCC
Confidence            3589999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=98.03  E-value=6.9e-05  Score=55.45  Aligned_cols=83  Identities=16%  Similarity=0.330  Sum_probs=62.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc---------------------chhHHHHHHHHhcCCCCeeE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM---------------------AAGRDVKVAIVMQNPAAKVD   78 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~---------------------~~~~~~~~~l~~~~~~~~~~   78 (138)
                      .+.+++++|+|+ ||+|..+++.|+..|. ++.+++++.                     .+++.+.+.+++..|..++.
T Consensus        21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            367889999998 6899999999999998 899998863                     35566667787777888888


Q ss_pred             EEEecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           79 VMELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        79 ~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      .+..|++ .+.++.++       ...|++|.+..
T Consensus       100 ~~~~~~~-~~~~~~~~-------~~~DlVid~~D  125 (338)
T PRK12475        100 PVVTDVT-VEELEELV-------KEVDLIIDATD  125 (338)
T ss_pred             EEeccCC-HHHHHHHh-------cCCCEEEEcCC
Confidence            8888885 33444432       24577777664

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=98.00  E-value=8.3e-05  Score=58.39  Aligned_cols=95  Identities=19%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             CCCCCCEEEEeCCC-CchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGAS-SGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQN--PAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        20 ~~~~~k~~litG~~-~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      .....|.+||||++ ++||.+++..|++.|++|+++..+-.+ ..+..+.|-..+  ++..+..+.+++.+..+++++++
T Consensus       392 ~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIe  471 (866)
T COG4982         392 GTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIE  471 (866)
T ss_pred             CCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHH
Confidence            45678999999997 789999999999999999998776433 333444443332  35678888999999999999999


Q ss_pred             HHHhcCC--------------CccEEEECcccC
Q 042455           96 DFTARAL--------------PLNILINKAGIC  114 (138)
Q Consensus        96 ~~~~~~~--------------~id~lv~~ag~~  114 (138)
                      .+..+..              .++.++-.|...
T Consensus       472 wIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~  504 (866)
T COG4982         472 WIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPR  504 (866)
T ss_pred             HhccccccccCCcceecccccCcceeeecccCC
Confidence            8765321              267777777653

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=97.99  E-value=5.4e-05  Score=64.92  Aligned_cols=90  Identities=21%  Similarity=0.204  Sum_probs=58.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCC----CEEEEEecCcchhHH---HHHHHHhcC-----CCCeeEEEEecCCCHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRG----VHVIMADRNMAAGRD---VKVAIVMQN-----PAAKVDVMELDLSSLASV   90 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g----~~v~~~~r~~~~~~~---~~~~l~~~~-----~~~~~~~~~~D~~~~~~~   90 (138)
                      ..++++|||++|.||..+++.|++++    ++|+++.|+......   +...+....     ...++.++.+|++++.--
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            35789999999999999999999887    689998887544322   111111110     013688899999754210


Q ss_pred             --HHHHHHHHhcCCCccEEEECcccCC
Q 042455           91 --RKFASDFTARALPLNILINKAGICG  115 (138)
Q Consensus        91 --~~~~~~~~~~~~~id~lv~~ag~~~  115 (138)
                        ...++++.   ..+|++||+|+...
T Consensus      1050 l~~~~~~~l~---~~~d~iiH~Aa~~~ 1073 (1389)
T TIGR03443      1050 LSDEKWSDLT---NEVDVIIHNGALVH 1073 (1389)
T ss_pred             cCHHHHHHHH---hcCCEEEECCcEec
Confidence              11222222   35899999999653

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.99  E-value=8.8e-05  Score=51.01  Aligned_cols=83  Identities=13%  Similarity=0.253  Sum_probs=61.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+++++|.|+ ||+|..+++.|+..|. ++.+++.+                   ..+++.+.+.+....|..++..+
T Consensus        18 kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        18 RLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            467889999986 6999999999999998 89999876                   34566667777777777777777


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ...+.+ +.+..++       ...|++|.+..
T Consensus        97 ~~~i~~-~~~~~~~-------~~~D~Vi~~~d  120 (202)
T TIGR02356        97 KERVTA-ENLELLI-------NNVDLVLDCTD  120 (202)
T ss_pred             hhcCCH-HHHHHHH-------hCCCEEEECCC
Confidence            666643 3333332       24688887764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.97  E-value=9.1e-05  Score=53.57  Aligned_cols=51  Identities=24%  Similarity=0.261  Sum_probs=44.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcC
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQN   72 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~   72 (138)
                      ...+|+++|.|+ ||.|++++..|+..|+ +|.+++|+.++++.+.+.+....
T Consensus       124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~  175 (284)
T PRK12549        124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF  175 (284)
T ss_pred             CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC
Confidence            467889999998 6899999999999998 79999999999988887775543

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.96  E-value=6.4e-05  Score=50.68  Aligned_cols=72  Identities=21%  Similarity=0.208  Sum_probs=59.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++.|+||+|-.|..+.++..++|..|.++.||+.+....          ..+...+.|+.|++++.+.+.       ..|
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~-------g~D   64 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLA-------GHD   64 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhc-------CCc
Confidence            477899999999999999999999999999998775431          235678899999988755544       579


Q ss_pred             EEEECcccC
Q 042455          106 ILINKAGIC  114 (138)
Q Consensus       106 ~lv~~ag~~  114 (138)
                      ++|..-|..
T Consensus        65 aVIsA~~~~   73 (211)
T COG2910          65 AVISAFGAG   73 (211)
T ss_pred             eEEEeccCC
Confidence            999988865

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.95  E-value=0.00034  Score=44.90  Aligned_cols=80  Identities=20%  Similarity=0.397  Sum_probs=62.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEEec
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVMELD   83 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~D   83 (138)
                      .++++|.|+ |++|..+++.|+..|. ++.+++.+                   ..+.+.+...+.+..|..++..+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            467888888 6999999999999998 79998763                   24567778888888889999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           84 LSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      + +.+....+++       ..|++|.+..
T Consensus        81 ~-~~~~~~~~~~-------~~d~vi~~~d  101 (135)
T PF00899_consen   81 I-DEENIEELLK-------DYDIVIDCVD  101 (135)
T ss_dssp             C-SHHHHHHHHH-------TSSEEEEESS
T ss_pred             c-cccccccccc-------CCCEEEEecC
Confidence            8 4555555553       4699988765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06849 hypothetical protein; Provisional

Probab=97.92  E-value=0.00026  Score=53.27  Aligned_cols=83  Identities=18%  Similarity=0.152  Sum_probs=54.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +.+++||||++..+|+.+++.|.+.|++|++++.++..........      .....+...-.+.+...+.+.++.++. 
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~------d~~~~~p~p~~d~~~~~~~L~~i~~~~-   75 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAV------DGFYTIPSPRWDPDAYIQALLSIVQRE-   75 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh------hheEEeCCCCCCHHHHHHHHHHHHHHc-
Confidence            4689999999999999999999999999999998865433211111      112222222234444444444444443 


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      ++|++|....
T Consensus        76 ~id~vIP~~e   85 (389)
T PRK06849         76 NIDLLIPTCE   85 (389)
T ss_pred             CCCEEEECCh
Confidence            5899998776

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.85  E-value=0.00012  Score=52.78  Aligned_cols=79  Identities=20%  Similarity=0.335  Sum_probs=57.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+.+++.++|.|+ ||-+++++..|++.|+ ++.++.|+.++++++.+.+....  ..+.  ..+..+.+..+       
T Consensus       122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~--~~~~~~~~~~~-------  189 (283)
T COG0169         122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVE--AAALADLEGLE-------  189 (283)
T ss_pred             cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--cccc--ccccccccccc-------
Confidence            4557899999998 6999999999999996 89999999999999888776542  1111  12222222111       


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                          ..|++||+..+.
T Consensus       190 ----~~dliINaTp~G  201 (283)
T COG0169         190 ----EADLLINATPVG  201 (283)
T ss_pred             ----ccCEEEECCCCC
Confidence                469999999876

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.84  E-value=0.00025  Score=51.24  Aligned_cols=81  Identities=17%  Similarity=0.221  Sum_probs=56.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +.++|+++|.|+ ||-+++++..|++.|+ ++.++.|+.++++++.+.+....+...+.  ..+   ........     
T Consensus       124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~--~~~---~~~~~~~~-----  192 (283)
T PRK14027        124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVD---ARGIEDVI-----  192 (283)
T ss_pred             CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE--ecC---HhHHHHHH-----
Confidence            356899999998 7999999999999997 79999999999888877765433221121  122   22222111     


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                        ...|++||+..+.
T Consensus       193 --~~~divINaTp~G  205 (283)
T PRK14027        193 --AAADGVVNATPMG  205 (283)
T ss_pred             --hhcCEEEEcCCCC
Confidence              2479999998764

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.84  E-value=0.00021  Score=53.63  Aligned_cols=82  Identities=18%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ ||+|..+++.|+..|. ++.+++++                   ..+++.+.+.+.+..|..++..+.
T Consensus       133 l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        133 LLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            57788998976 7999999999999998 79999886                   456777777887777777776666


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..+++ +.+..+++       ..|++|++..
T Consensus       212 ~~~~~-~~~~~~~~-------~~D~Vv~~~d  234 (376)
T PRK08762        212 ERVTS-DNVEALLQ-------DVDVVVDGAD  234 (376)
T ss_pred             ccCCh-HHHHHHHh-------CCCEEEECCC
Confidence            55542 33333332       3688887765

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.84  E-value=0.00035  Score=48.91  Aligned_cols=83  Identities=16%  Similarity=0.327  Sum_probs=61.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+++++|.|+ ||+|.++++.|+..|. ++.+++.+                   ..+.+.+.+.+++..|..++..+
T Consensus        18 ~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          18 KLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            467889999986 6999999999999998 78888542                   23566677778888877788888


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..+++ .+.+..++.       ..|++|.+..
T Consensus        97 ~~~i~-~~~~~~~~~-------~~DvVi~~~d  120 (228)
T cd00757          97 NERLD-AENAEELIA-------GYDLVLDCTD  120 (228)
T ss_pred             cceeC-HHHHHHHHh-------CCCEEEEcCC
Confidence            77774 344433332       4688887765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.83  E-value=0.00011  Score=55.87  Aligned_cols=77  Identities=14%  Similarity=0.248  Sum_probs=55.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++++|+++|.|+ |++|..+++.|...|+ ++.++.|+.++++.+..++.    ...       +...++....     
T Consensus       177 ~~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~----~~~-------~~~~~~l~~~-----  239 (414)
T PRK13940        177 DNISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR----NAS-------AHYLSELPQL-----  239 (414)
T ss_pred             cCccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc----CCe-------EecHHHHHHH-----
Confidence            3578999999999 8999999999999996 79999999888776665441    111       1122233222     


Q ss_pred             hcCCCccEEEECcccCC
Q 042455           99 ARALPLNILINKAGICG  115 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~  115 (138)
                        ....|++|++.+...
T Consensus       240 --l~~aDiVI~aT~a~~  254 (414)
T PRK13940        240 --IKKADIIIAAVNVLE  254 (414)
T ss_pred             --hccCCEEEECcCCCC
Confidence              235799999999754

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.80  E-value=0.0002  Score=51.72  Aligned_cols=80  Identities=20%  Similarity=0.157  Sum_probs=55.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++|.|+ ||.+++++..|++.|+ +|.++.|+.++++++...+...   ..+.  .  +...+++.       .
T Consensus       122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~---~~~~--~--~~~~~~~~-------~  186 (282)
T TIGR01809       122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV---GVIT--R--LEGDSGGL-------A  186 (282)
T ss_pred             ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc---Ccce--e--ccchhhhh-------h
Confidence            357899999987 7999999999999997 7999999998888877665321   1111  1  11112221       1


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      .....|++||+..+..
T Consensus       187 ~~~~~DiVInaTp~g~  202 (282)
T TIGR01809       187 IEKAAEVLVSTVPADV  202 (282)
T ss_pred             cccCCCEEEECCCCCC
Confidence            1245799999988754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.80  E-value=0.00056  Score=48.48  Aligned_cols=83  Identities=16%  Similarity=0.317  Sum_probs=59.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+++++|.|+ ||+|..+++.|+..|. ++.+++.+.                   .+.+.+.+.+.+..|..++..+
T Consensus        29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            367889999998 8999999999999997 788886632                   3455566777777777778777


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ...++ .+.+..++       ...|++|.+..
T Consensus       108 ~~~i~-~~~~~~~~-------~~~DiVi~~~D  131 (245)
T PRK05690        108 NARLD-DDELAALI-------AGHDLVLDCTD  131 (245)
T ss_pred             eccCC-HHHHHHHH-------hcCCEEEecCC
Confidence            76665 23333332       24577777664

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.79  E-value=0.00021  Score=48.53  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=46.5

Q ss_pred             CCCCEEEEeCC----------------CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC
Q 042455           22 AAGVTAIVTGA----------------SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        22 ~~~k~~litG~----------------~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      +.||++|||+|                +|-.|.++|+.+...|++|.++..... ...          ...+..  .++.
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~----------p~~~~~--i~v~   67 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP----------PPGVKV--IRVE   67 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEE--EE-S
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc----------cccceE--EEec
Confidence            35777887754                356999999999999999999887632 110          122333  4455


Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           86 SLASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      +.+++...+.+..   ..-|++|.+|++.
T Consensus        68 sa~em~~~~~~~~---~~~Di~I~aAAVs   93 (185)
T PF04127_consen   68 SAEEMLEAVKELL---PSADIIIMAAAVS   93 (185)
T ss_dssp             SHHHHHHHHHHHG---GGGSEEEE-SB--
T ss_pred             chhhhhhhhcccc---CcceeEEEecchh
Confidence            6677666665544   3459999999985

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.76  E-value=0.00042  Score=50.26  Aligned_cols=80  Identities=21%  Similarity=0.290  Sum_probs=56.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+++++|+++++.+...|++++++++++++.+.+ ..   .  +..   ...|..+.+....+.+....  .
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~---~--~~~---~~~~~~~~~~~~~~~~~~~~--~  234 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA-KE---L--GAD---YVIDYRKEDFVREVRELTGK--R  234 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HH---c--CCC---eEEecCChHHHHHHHHHhCC--C
Confidence            578999999999999999999999999999998887664433 11   1  221   12455565665555544322  3


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++++++|.
T Consensus       235 ~~d~~i~~~g~  245 (342)
T cd08266         235 GVDVVVEHVGA  245 (342)
T ss_pred             CCcEEEECCcH
Confidence            69999999874

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.76  E-value=0.0004  Score=51.47  Aligned_cols=83  Identities=17%  Similarity=0.370  Sum_probs=59.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc---------------------chhHHHHHHHHhcCCCCeeE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM---------------------AAGRDVKVAIVMQNPAAKVD   78 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~---------------------~~~~~~~~~l~~~~~~~~~~   78 (138)
                      .+.+++++|.|+ ||+|..+++.|+..|. ++.+++.+.                     .+.+.+.+.+++..|..++.
T Consensus        21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~   99 (339)
T PRK07688         21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE   99 (339)
T ss_pred             HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence            467889999998 7999999999999998 899998863                     34455556676666777788


Q ss_pred             EEEecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           79 VMELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        79 ~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      .+..+++. +.+..+++       ..|++|.+..
T Consensus       100 ~~~~~~~~-~~~~~~~~-------~~DlVid~~D  125 (339)
T PRK07688        100 AIVQDVTA-EELEELVT-------GVDLIIDATD  125 (339)
T ss_pred             EEeccCCH-HHHHHHHc-------CCCEEEEcCC
Confidence            88777753 33333322       3577776654

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.76  E-value=7.6e-05  Score=58.37  Aligned_cols=47  Identities=26%  Similarity=0.404  Sum_probs=41.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   68 (138)
                      ++.+|+++|+|+ ||+|++++..|++.|++|++++|+.++++++...+
T Consensus       376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l  422 (529)
T PLN02520        376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV  422 (529)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence            577899999999 59999999999999999999999988777765544

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.75  E-value=0.00011  Score=53.02  Aligned_cols=76  Identities=18%  Similarity=0.311  Sum_probs=55.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++.+|+++|+|+ ||+|+++++.|...| .+|.+++|+.++++++.+.+....   .+.   .+.    +.       .+
T Consensus       120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~---~~~---~~~----~~-------~~  181 (278)
T PRK00258        120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG---KAE---LDL----EL-------QE  181 (278)
T ss_pred             CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc---cee---ecc----cc-------hh
Confidence            577899999997 899999999999999 589999999888877766653221   011   111    00       11


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                      .....|++||+....
T Consensus       182 ~~~~~DivInaTp~g  196 (278)
T PRK00258        182 ELADFDLIINATSAG  196 (278)
T ss_pred             ccccCCEEEECCcCC
Confidence            224579999999865

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.75  E-value=4.1e-05  Score=52.59  Aligned_cols=48  Identities=25%  Similarity=0.224  Sum_probs=40.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~   67 (138)
                      ..+++||+++|+|.+ .+|..+++.|.+.|++|++++++.++.++....
T Consensus        23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~   70 (200)
T cd01075          23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL   70 (200)
T ss_pred             CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            457899999999995 899999999999999999999987766665443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.75  E-value=0.00029  Score=51.71  Aligned_cols=80  Identities=15%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|.+++|+|+++++|..+++.....|++|+.+++++++.+.+.+.+     +...   ..|..+.++....+.+.. . +
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l-----Ga~~---vi~~~~~~~~~~~i~~~~-~-~  220 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL-----GFDD---AFNYKEEPDLDAALKRYF-P-N  220 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc-----CCce---eEEcCCcccHHHHHHHhC-C-C
Confidence            5789999999999999999877788999998888876655443323     2211   122222222333333322 1 3


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      .+|+++.+.|
T Consensus       221 gvd~v~d~~g  230 (338)
T cd08295         221 GIDIYFDNVG  230 (338)
T ss_pred             CcEEEEECCC
Confidence            6888888766

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=97.74  E-value=7.6e-05  Score=52.70  Aligned_cols=87  Identities=16%  Similarity=0.111  Sum_probs=65.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH-HHHHH---hcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV-KVAIV---MQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~-~~~l~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ..|++||||-+|-=|..++..|+.+|+.|..+-|..+..... +..|-   ..+.+.....+-.|++|...+.+++..+ 
T Consensus        27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i-  105 (376)
T KOG1372|consen   27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI-  105 (376)
T ss_pred             cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc-
Confidence            357999999999999999999999999998877755443322 22221   1122567888899999999999999887 


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                          +++-+.|.|+-.
T Consensus       106 ----kPtEiYnLaAQS  117 (376)
T KOG1372|consen  106 ----KPTEVYNLAAQS  117 (376)
T ss_pred             ----Cchhhhhhhhhc
Confidence                467777777654

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=0.00012  Score=53.48  Aligned_cols=76  Identities=22%  Similarity=0.321  Sum_probs=60.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ..++|-||+|-.|.-+|++|+.+|.+.++.+||..+++.+...|     +.+.-.+.+.+  +..++...+       +.
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~L-----G~~~~~~p~~~--p~~~~~~~~-------~~   72 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASL-----GPEAAVFPLGV--PAALEAMAS-------RT   72 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhc-----CccccccCCCC--HHHHHHHHh-------cc
Confidence            46789999999999999999999999999999999999888877     44444555554  444444444       46


Q ss_pred             cEEEECcccC
Q 042455          105 NILINKAGIC  114 (138)
Q Consensus       105 d~lv~~ag~~  114 (138)
                      ++|+||+|..
T Consensus        73 ~VVlncvGPy   82 (382)
T COG3268          73 QVVLNCVGPY   82 (382)
T ss_pred             eEEEeccccc
Confidence            9999999975

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.71  E-value=0.00068  Score=47.02  Aligned_cols=81  Identities=16%  Similarity=0.301  Sum_probs=57.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc------------------chhHHHHHHHHhcCCCCeeEEEEe
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM------------------AAGRDVKVAIVMQNPAAKVDVMEL   82 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~   82 (138)
                      +.+++++|.|+ ||+|..+++.|+..|. ++.+++.+.                  .+.+.+.+.+.+..|..++..+..
T Consensus        26 L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~  104 (212)
T PRK08644         26 LKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE  104 (212)
T ss_pred             HhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence            57788999997 7999999999999998 699988762                  345556667777777777777666


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCccEEEECc
Q 042455           83 DLSSLASVRKFASDFTARALPLNILINKA  111 (138)
Q Consensus        83 D~~~~~~~~~~~~~~~~~~~~id~lv~~a  111 (138)
                      .+++ +.+.+++       ...|++|.+.
T Consensus       105 ~i~~-~~~~~~~-------~~~DvVI~a~  125 (212)
T PRK08644        105 KIDE-DNIEELF-------KDCDIVVEAF  125 (212)
T ss_pred             ecCH-HHHHHHH-------cCCCEEEECC
Confidence            6643 2332222       2467777664

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.71  E-value=0.00079  Score=50.51  Aligned_cols=77  Identities=14%  Similarity=0.206  Sum_probs=54.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +.++.++|+|+ |.+|+..++.+...|++|.+++++.++.+.+...+     +..   +..+..+.+.+.+.+.      
T Consensus       165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~l~------  229 (370)
T TIGR00518       165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDAVK------  229 (370)
T ss_pred             CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHHHc------
Confidence            46678999988 79999999999999999999999877655543322     221   2234455555544432      


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                       ..|++|+++++.
T Consensus       230 -~aDvVI~a~~~~  241 (370)
T TIGR00518       230 -RADLLIGAVLIP  241 (370)
T ss_pred             -cCCEEEEccccC
Confidence             469999998663

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=97.70  E-value=0.00055  Score=49.07  Aligned_cols=80  Identities=16%  Similarity=0.289  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+++++|+++++.+...|+++++++++.+..+.+ ..+     +..   ...+..+.+....+.+.. . ..
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~~~~-~-~~  207 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL-----GAD---VAINYRTEDFAEEVKEAT-G-GR  207 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc-----CCC---EEEeCCchhHHHHHHHHh-C-CC
Confidence            578999999999999999999999999999998876654443 222     221   123444333333333322 1 24


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++++++|.
T Consensus       208 ~~d~vi~~~g~  218 (323)
T cd05276         208 GVDVILDMVGG  218 (323)
T ss_pred             CeEEEEECCch
Confidence            68999998773

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.70  E-value=7.4e-05  Score=55.02  Aligned_cols=79  Identities=14%  Similarity=0.046  Sum_probs=47.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC-------CEEEEEecCcch--hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRG-------VHVIMADRNMAA--GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g-------~~v~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +++|||++|.+|..++..|+..+       .+|+++++++..  ++....++...     ......|+....+..     
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~-----~~~~~~~~~~~~~~~-----   73 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC-----AFPLLKSVVATTDPE-----   73 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhc-----cccccCCceecCCHH-----
Confidence            58999999999999999999854       489999996532  22222222111     001112332222221     


Q ss_pred             HHhcCCCccEEEECcccCCC
Q 042455           97 FTARALPLNILINKAGICGT  116 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~  116 (138)
                        +.+...|++|+.||....
T Consensus        74 --~~l~~aDiVI~tAG~~~~   91 (325)
T cd01336          74 --EAFKDVDVAILVGAMPRK   91 (325)
T ss_pred             --HHhCCCCEEEEeCCcCCC
Confidence              222468999999998643

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.69  E-value=0.00057  Score=51.71  Aligned_cols=88  Identities=15%  Similarity=0.290  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++++|+++|+|+ |-+|.-+|++|..+|. +|+++.|..++++++..++     +       .++...+++...+.   
T Consensus       174 ~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~-----~-------~~~~~l~el~~~l~---  237 (414)
T COG0373         174 GSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL-----G-------AEAVALEELLEALA---  237 (414)
T ss_pred             cccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh-----C-------CeeecHHHHHHhhh---
Confidence            3488999999999 5799999999999996 8999999999999888776     2       22223344444433   


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHh
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHF  129 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~  129 (138)
                          ..|++|.+.|..  ..-++.+.++..+
T Consensus       238 ----~~DvVissTsa~--~~ii~~~~ve~a~  262 (414)
T COG0373         238 ----EADVVISSTSAP--HPIITREMVERAL  262 (414)
T ss_pred             ----hCCEEEEecCCC--ccccCHHHHHHHH
Confidence                468888888753  3334445555443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.68  E-value=0.00087  Score=50.01  Aligned_cols=83  Identities=22%  Similarity=0.321  Sum_probs=63.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+++++|.|+ ||+|..+++.|+..|. ++.+++.+.                   .+.+.+.+.+++..|..++..+
T Consensus        25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            367889999988 7999999999999998 799987753                   4566777888888888888888


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ...++. +....++.       ..|++|.+..
T Consensus       104 ~~~i~~-~~~~~~~~-------~~DvVvd~~d  127 (355)
T PRK05597        104 VRRLTW-SNALDELR-------DADVILDGSD  127 (355)
T ss_pred             EeecCH-HHHHHHHh-------CCCEEEECCC
Confidence            777753 33333332       4688888765

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=97.67  E-value=0.00038  Score=50.03  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+++++|+++++.+...|++|+++++++++.+.+. .+     +..   ..+|..+.+..+.+.+..  ...
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~-----g~~---~~~~~~~~~~~~~~~~~~--~~~  212 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QA-----GAD---AVFNYRAEDLADRILAAT--AGQ  212 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc-----CCC---EEEeCCCcCHHHHHHHHc--CCC
Confidence            5789999999999999999999999999999998876544432 22     221   123444444444443322  123


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|.+++++|.
T Consensus       213 ~~d~vi~~~~~  223 (325)
T cd08253         213 GVDVIIEVLAN  223 (325)
T ss_pred             ceEEEEECCch
Confidence            69999998764

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.67  E-value=0.001  Score=43.10  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=57.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      ++|.|+ ||+|.++++.|+..|. ++.+++.+                   ..+.+.+.+.+++..|..++..+..++.+
T Consensus         2 VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           2 VLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            678887 8999999999999998 78888654                   23456667777777777888888777754


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECccc
Q 042455           87 LASVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      ...        ...+.+.|++|.+..-
T Consensus        81 ~~~--------~~~~~~~diVi~~~d~   99 (143)
T cd01483          81 DNL--------DDFLDGVDLVIDAIDN   99 (143)
T ss_pred             hhH--------HHHhcCCCEEEECCCC
Confidence            322        1122468999988763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.67  E-value=0.00049  Score=49.95  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|+|+++++|+++++.+...|++++++.+++++.+.
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~  202 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKI  202 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence            47799999999999999999999999999998887655443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.67  E-value=0.00039  Score=51.03  Aligned_cols=78  Identities=14%  Similarity=0.200  Sum_probs=50.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .+++|+|+++++|.+.++.....|+ +|+.+++++++.+.+..++     +....   .|..+ +++.+.+.+.. . ..
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l-----Ga~~v---i~~~~-~~~~~~i~~~~-~-~g  224 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL-----GFDAA---INYKT-DNVAERLRELC-P-EG  224 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc-----CCcEE---EECCC-CCHHHHHHHHC-C-CC
Confidence            7999999999999999887777898 7999988876655444333     32211   22222 22223333322 2 36


Q ss_pred             ccEEEECccc
Q 042455          104 LNILINKAGI  113 (138)
Q Consensus       104 id~lv~~ag~  113 (138)
                      +|+++.++|.
T Consensus       225 vd~vid~~g~  234 (345)
T cd08293         225 VDVYFDNVGG  234 (345)
T ss_pred             ceEEEECCCc
Confidence            8999988763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00024  Score=49.63  Aligned_cols=80  Identities=21%  Similarity=0.301  Sum_probs=58.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC---EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV---HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~---~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++++||++|=+|.+|.+.+..+|.   ++++.+..                       .+|+++..+.++++++.    
T Consensus         2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk-----------------------d~DLt~~a~t~~lF~~e----   54 (315)
T KOG1431|consen    2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK-----------------------DADLTNLADTRALFESE----   54 (315)
T ss_pred             ceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc-----------------------cccccchHHHHHHHhcc----
Confidence            6899999999999999999999875   45554431                       57999999999999885    


Q ss_pred             CCccEEEECcccCCCC---CccCHHHHHHHhhhc
Q 042455          102 LPLNILINKAGICGTP---FMLSKDNIELHFATN  132 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~---~~~~~~~~~~~~~~n  132 (138)
                       ++..+|+.|+..+..   .....+-|..-+++|
T Consensus        55 -kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~in   87 (315)
T KOG1431|consen   55 -KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQIN   87 (315)
T ss_pred             -CCceeeehHhhhcchhhcCCCchHHHhhcceec
Confidence             578888888765422   134455555544443

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.65  E-value=0.0011  Score=44.56  Aligned_cols=77  Identities=18%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc------------------chhHHHHHHHHhcCCCCeeEEEEecCCCH
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRNM------------------AAGRDVKVAIVMQNPAAKVDVMELDLSSL   87 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~D~~~~   87 (138)
                      ++|.|+ ||+|..+++.|+..|. ++.+++.+.                  .+.+.....+++..|..++..+...++. 
T Consensus         2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~-   79 (174)
T cd01487           2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE-   79 (174)
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh-
Confidence            678886 7999999999999998 699998864                  3455566677777777777777666643 


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECcc
Q 042455           88 ASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      +.+.+++       ...|++|.+..
T Consensus        80 ~~~~~~l-------~~~DlVi~~~d   97 (174)
T cd01487          80 NNLEGLF-------GDCDIVVEAFD   97 (174)
T ss_pred             hhHHHHh-------cCCCEEEECCC
Confidence            3333332       24688877743

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.64  E-value=0.00034  Score=45.43  Aligned_cols=76  Identities=17%  Similarity=0.301  Sum_probs=54.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCC--CCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNP--AAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++.|+|++|.+|..++..|...+.  ++++++++++.++....++.....  .........|   ++           .+
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~---~~-----------~~   67 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD---YE-----------AL   67 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS---GG-----------GG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc---cc-----------cc
Confidence            578999999999999999999874  799999998887777666654321  1223332322   22           23


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                      ..-|++|..+|...
T Consensus        68 ~~aDivvitag~~~   81 (141)
T PF00056_consen   68 KDADIVVITAGVPR   81 (141)
T ss_dssp             TTESEEEETTSTSS
T ss_pred             ccccEEEEeccccc
Confidence            45799999999864

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.64  E-value=0.00045  Score=50.39  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+.+++|+|+++++|...++.....|++|+.+++++++.+.+ .++     +....   .|..+.+...+.+.....  +
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~-~~l-----Ga~~v---i~~~~~~~~~~~~~~~~~--~  206 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL-KKL-----GFDVA---FNYKTVKSLEETLKKASP--D  206 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCCEE---EeccccccHHHHHHHhCC--C
Confidence            578999999999999999887777899999888877664443 222     33211   222222233333333321  3


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      .+|+++.+.|
T Consensus       207 gvdvv~d~~G  216 (325)
T TIGR02825       207 GYDCYFDNVG  216 (325)
T ss_pred             CeEEEEECCC
Confidence            5888888876

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function

Probab=97.64  E-value=0.00034  Score=50.80  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=78.7

Q ss_pred             CCEEEEeCC-CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGA-SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~-~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ..+++|.|. ..-|++.+|.-|-++|+-|+++..+.+..+....+    . ...+.....|..++.++...+.+....+.
T Consensus         3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e----~-~~dI~~L~ld~~~~~~~~~~l~~f~~~L~   77 (299)
T PF08643_consen    3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESE----D-RPDIRPLWLDDSDPSSIHASLSRFASLLS   77 (299)
T ss_pred             eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhc----c-CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence            457889996 68999999999999999999999887664443222    1 24477888888777777777776665433


Q ss_pred             --------------CccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455          103 --------------PLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 --------------~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                                    .+..+|..-...   +|...++.+.|.+.++.|+..++
T Consensus        78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~  129 (299)
T PF08643_consen   78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPI  129 (299)
T ss_pred             CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHH
Confidence                          345555554443   35568899999999999876543

One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.63  E-value=0.00043  Score=53.54  Aligned_cols=47  Identities=19%  Similarity=0.295  Sum_probs=39.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~   67 (138)
                      .++++|+++|+|+ ||+|+++++.|.+.|++|.+++|+.++.++....
T Consensus       328 ~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~  374 (477)
T PRK09310        328 IPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASR  374 (477)
T ss_pred             CCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            3567899999996 7999999999999999999999988776665443

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.63  E-value=0.0005  Score=50.92  Aligned_cols=80  Identities=14%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+.+++|.|+++++|...++.....|++|+.+++++++.+.+..++     +...   ..|..+.+.+...+.+...  +
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l-----Ga~~---vi~~~~~~~~~~~i~~~~~--~  227 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL-----GFDE---AFNYKEEPDLDAALKRYFP--E  227 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc-----CCCE---EEECCCcccHHHHHHHHCC--C
Confidence            5789999999999999999877788999988888776654433222     3221   1122222223333333221  3


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      .+|+++.++|
T Consensus       228 gvD~v~d~vG  237 (348)
T PLN03154        228 GIDIYFDNVG  237 (348)
T ss_pred             CcEEEEECCC
Confidence            5888888776

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.62  E-value=0.00074  Score=47.24  Aligned_cols=75  Identities=17%  Similarity=0.237  Sum_probs=57.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      .++|.|+ |-+|..+|+.|.++|.+|++++++++...+....      ......+.+|-++++.++++      .....|
T Consensus         2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~a------gi~~aD   68 (225)
T COG0569           2 KIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEA------GIDDAD   68 (225)
T ss_pred             EEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhc------CCCcCC
Confidence            4667776 6999999999999999999999998887663331      13467888999998887665      123568


Q ss_pred             EEEECccc
Q 042455          106 ILINKAGI  113 (138)
Q Consensus       106 ~lv~~ag~  113 (138)
                      ++|...|-
T Consensus        69 ~vva~t~~   76 (225)
T COG0569          69 AVVAATGN   76 (225)
T ss_pred             EEEEeeCC
Confidence            88877774

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.60  E-value=0.00063  Score=50.15  Aligned_cols=77  Identities=16%  Similarity=0.273  Sum_probs=48.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC-C
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA-L  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~  102 (138)
                      +.++||+||+||+|...++.....|+.++++..+.++.+ ...++     +...   ..|..+.+    +.+++++.. +
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~l-----GAd~---vi~y~~~~----~~~~v~~~t~g  209 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKEL-----GADH---VINYREED----FVEQVRELTGG  209 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhc-----CCCE---EEcCCccc----HHHHHHHHcCC
Confidence            899999999999999999988888976666655554444 33332     3221   11233333    333333322 2


Q ss_pred             -CccEEEECccc
Q 042455          103 -PLNILINKAGI  113 (138)
Q Consensus       103 -~id~lv~~ag~  113 (138)
                       .+|+++...|.
T Consensus       210 ~gvDvv~D~vG~  221 (326)
T COG0604         210 KGVDVVLDTVGG  221 (326)
T ss_pred             CCceEEEECCCH
Confidence             58999998884

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.60  E-value=0.0011  Score=46.82  Aligned_cols=83  Identities=18%  Similarity=0.326  Sum_probs=58.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+++++|.|+ ||+|..+++.|+..|. ++.+++.+.                   .+++.+.+.+++..|..++..+
T Consensus        21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            367788999988 6999999999999997 788887642                   3455566777777777777777


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ...++ .+.+.++++       ..|++|.+..
T Consensus       100 ~~~i~-~~~~~~~~~-------~~DlVvd~~D  123 (240)
T TIGR02355       100 NAKLD-DAELAALIA-------EHDIVVDCTD  123 (240)
T ss_pred             eccCC-HHHHHHHhh-------cCCEEEEcCC
Confidence            65554 233333332       3577776664

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=97.57  E-value=0.0014  Score=49.26  Aligned_cols=82  Identities=16%  Similarity=0.307  Sum_probs=59.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+.+++|.|+ ||+|..+++.|+..|. ++.+++.+                   ..+++.+...+.+..|..++..+.
T Consensus        39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~  117 (370)
T PRK05600         39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR  117 (370)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence            56788999988 6999999999999997 89998875                   235566677777777777788877


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..++ .+.+..++.       ..|++|.+.-
T Consensus       118 ~~i~-~~~~~~~~~-------~~DlVid~~D  140 (370)
T PRK05600        118 ERLT-AENAVELLN-------GVDLVLDGSD  140 (370)
T ss_pred             eecC-HHHHHHHHh-------CCCEEEECCC
Confidence            7775 333333332       3577776654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.53  E-value=0.0023  Score=47.00  Aligned_cols=80  Identities=11%  Similarity=0.233  Sum_probs=57.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCC-CeeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPA-AKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .-.++++.|+|+ |.+|..++..|+..|.  .+++++++++.++....++....+- .++... .  .+.+.        
T Consensus         3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~~~~--------   70 (315)
T PRK00066          3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GDYSD--------   70 (315)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CCHHH--------
Confidence            345678999998 9999999999999886  7999999999888888777654321 122222 1  22221        


Q ss_pred             HhcCCCccEEEECcccCC
Q 042455           98 TARALPLNILINKAGICG  115 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~  115 (138)
                         +..-|++|..+|...
T Consensus        71 ---~~~adivIitag~~~   85 (315)
T PRK00066         71 ---CKDADLVVITAGAPQ   85 (315)
T ss_pred             ---hCCCCEEEEecCCCC
Confidence               235799999999854

>PRK08223 hypothetical protein; Validated

Probab=97.51  E-value=0.00096  Score=48.25  Aligned_cols=82  Identities=13%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+.+++|.|+ ||+|..+++.|+..|. ++.+++.+                   ..+.+.+.+.+++..|..++..+
T Consensus        24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            367889999988 6999999999999998 78888764                   23556667777777888888888


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKA  111 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a  111 (138)
                      ...++. +.+..+++       ..|++|.+.
T Consensus       103 ~~~l~~-~n~~~ll~-------~~DlVvD~~  125 (287)
T PRK08223        103 PEGIGK-ENADAFLD-------GVDVYVDGL  125 (287)
T ss_pred             ecccCc-cCHHHHHh-------CCCEEEECC
Confidence            777753 23333332       357776443

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.50  E-value=0.00024  Score=52.27  Aligned_cols=81  Identities=15%  Similarity=0.095  Sum_probs=51.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++.+++.|+|++|.+|..++..|+..+  ..+++++++  .++....++....+  .  ....+.+|+.+....+     
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~--~--~~v~~~td~~~~~~~l-----   74 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDT--P--AKVTGYADGELWEKAL-----   74 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCc--C--ceEEEecCCCchHHHh-----
Confidence            345689999999999999999999665  479999993  22222334433221  1  2233444433322222     


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                        ...|++|+++|...
T Consensus        75 --~gaDvVVitaG~~~   88 (321)
T PTZ00325         75 --RGADLVLICAGVPR   88 (321)
T ss_pred             --CCCCEEEECCCCCC
Confidence              35799999999753

>PLN00106 malate dehydrogenase

Probab=97.50  E-value=0.00022  Score=52.46  Aligned_cols=81  Identities=16%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ..+++.|+|++|.+|..++..|+..+.  .+++++.++  ++....+|....+  ..  ...++++.++....       
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~--~~--~i~~~~~~~d~~~~-------   83 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT--PA--QVRGFLGDDQLGDA-------   83 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc--Cc--eEEEEeCCCCHHHH-------
Confidence            456899999999999999999997764  799999987  2222234432221  11  12233222222222       


Q ss_pred             CCCccEEEECcccCCC
Q 042455          101 ALPLNILINKAGICGT  116 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~  116 (138)
                      +...|++|+.||....
T Consensus        84 l~~aDiVVitAG~~~~   99 (323)
T PLN00106         84 LKGADLVIIPAGVPRK   99 (323)
T ss_pred             cCCCCEEEEeCCCCCC
Confidence            2358999999998543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.50  E-value=0.0018  Score=45.57  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=60.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+.+++|.|. ||+|..+++.|+..|. ++.+++.+.                   .+.+.+.+.+....|..++..+.
T Consensus         9 L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           9 LRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            56778999988 6999999999999997 899987642                   34566677777778878888777


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..++ ++....++.      ..+|++|.+..
T Consensus        88 ~~i~-~~~~~~l~~------~~~D~VvdaiD  111 (231)
T cd00755          88 EFLT-PDNSEDLLG------GDPDFVVDAID  111 (231)
T ss_pred             eecC-HhHHHHHhc------CCCCEEEEcCC
Confidence            6665 334433332      24788888765

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=97.50  E-value=0.0019  Score=45.47  Aligned_cols=79  Identities=23%  Similarity=0.314  Sum_probs=55.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      ++|.|+ ||+|.++++.|+..|. ++.+++.+.                   .+++.+.+.+++..|..++..+..++.+
T Consensus         2 VlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           2 VLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            677775 7999999999999998 788887741                   3455556667777778888888888865


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           87 LASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ......   .   .+..+|++|.+..
T Consensus        81 ~~~~~~---~---f~~~~DvVi~a~D  100 (234)
T cd01484          81 EQDFND---T---FFEQFHIIVNALD  100 (234)
T ss_pred             hhhchH---H---HHhCCCEEEECCC
Confidence            332211   1   1235788887754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.48  E-value=0.001  Score=48.28  Aligned_cols=84  Identities=20%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcc---hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMA---AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      .++++|+++|.|+ ||-+++++..|+..|+ +|.++.|+.+   +++++.+.+.... ...+...  +.   ++... +.
T Consensus       120 ~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~~--~~---~~~~~-l~  191 (288)
T PRK12749        120 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVT--DL---ADQQA-FA  191 (288)
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEEe--ch---hhhhh-hh
Confidence            3568899999998 5669999999999997 8999999854   6666665553322 1112221  11   11111 11


Q ss_pred             HHHhcCCCccEEEECcccC
Q 042455           96 DFTARALPLNILINKAGIC  114 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~  114 (138)
                         +...+.|++||+..+.
T Consensus       192 ---~~~~~aDivINaTp~G  207 (288)
T PRK12749        192 ---EALASADILTNGTKVG  207 (288)
T ss_pred             ---hhcccCCEEEECCCCC
Confidence               1224679999988664

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=97.48  E-value=0.0013  Score=48.23  Aligned_cols=78  Identities=23%  Similarity=0.368  Sum_probs=55.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      ++|+|+ ||+|.++++.|+..|. ++.+++.+                   ..+++.+.+.+++..|..++..+..++++
T Consensus         2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            688887 7999999999999998 78888763                   13455566777777777888888888876


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           87 LASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ......++       ...|++|++.-
T Consensus        81 ~~~~~~f~-------~~~DvVv~a~D   99 (312)
T cd01489          81 PDFNVEFF-------KQFDLVFNALD   99 (312)
T ss_pred             ccchHHHH-------hcCCEEEECCC
Confidence            32222222       24677777654

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08328 hypothetical protein; Provisional

Probab=97.48  E-value=0.0021  Score=45.12  Aligned_cols=82  Identities=17%  Similarity=0.276  Sum_probs=54.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcc--------------------hhHHHHHHHHhcCCCCeeEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMA--------------------AGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~--------------------~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.+++.+.-                    +.+.....++...|...+..+
T Consensus        25 L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~  103 (231)
T PRK08328         25 LKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF  103 (231)
T ss_pred             HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence            56788999988 6999999999999997 7888876421                    122223445555666777776


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ...++ .+.+..+++       ..|++|.+..
T Consensus       104 ~~~~~-~~~~~~~l~-------~~D~Vid~~d  127 (231)
T PRK08328        104 VGRLS-EENIDEVLK-------GVDVIVDCLD  127 (231)
T ss_pred             eccCC-HHHHHHHHh-------cCCEEEECCC
Confidence            66653 334443332       4588877765

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.47  E-value=0.0021  Score=44.22  Aligned_cols=63  Identities=21%  Similarity=0.357  Sum_probs=45.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC---c---------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN---M---------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~---~---------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      .+..++++|.|+ ||+|..+++.|+..|. ++.+++.+   .               .+.+...+.+....|..++..+.
T Consensus        18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            367788999998 6999999999999998 79999876   1               12333445555556656666554


Q ss_pred             ecC
Q 042455           82 LDL   84 (138)
Q Consensus        82 ~D~   84 (138)
                      .++
T Consensus        97 ~~i   99 (200)
T TIGR02354        97 EKI   99 (200)
T ss_pred             eeC
Confidence            444

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.45  E-value=0.0018  Score=44.35  Aligned_cols=81  Identities=21%  Similarity=0.331  Sum_probs=58.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ +|+|.++++.|+..|. ++.+++.+                   ..+.+.+.+.+++..|..++..+.
T Consensus        19 L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~   97 (197)
T cd01492          19 LRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT   97 (197)
T ss_pred             HHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            56788999986 5799999999999998 68888753                   134556677788888888888777


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..+++  ....++       ..+|++|.+..
T Consensus        98 ~~~~~--~~~~~~-------~~~dvVi~~~~  119 (197)
T cd01492          98 DDISE--KPEEFF-------SQFDVVVATEL  119 (197)
T ss_pred             cCccc--cHHHHH-------hCCCEEEECCC
Confidence            66652  122222       35799887754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=97.44  E-value=0.0024  Score=45.82  Aligned_cols=85  Identities=21%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+.+++|.|+ ||+|..+++.|+..|. ++.+++.+.                   .+.+.+.+.+...+|..++..+
T Consensus        27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i  105 (268)
T PRK15116         27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV  105 (268)
T ss_pred             HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence            367888999987 6999999999999995 898887641                   2334556666677777777776


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECccc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      ..-+ +++....++.      ...|++|.+...
T Consensus       106 ~~~i-~~e~~~~ll~------~~~D~VIdaiD~  131 (268)
T PRK15116        106 DDFI-TPDNVAEYMS------AGFSYVIDAIDS  131 (268)
T ss_pred             eccc-ChhhHHHHhc------CCCCEEEEcCCC
Confidence            4323 3455444432      257888888764

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.42  E-value=0.0013  Score=48.85  Aligned_cols=80  Identities=14%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -+|+.+||.||++|+|.+.++-....|+..+++.++.+..+ +.+.+     +..   ...|..+++-++.+.+..   .
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~-l~k~l-----GAd---~vvdy~~~~~~e~~kk~~---~  223 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLE-LVKKL-----GAD---EVVDYKDENVVELIKKYT---G  223 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHH-HHHHc-----CCc---EeecCCCHHHHHHHHhhc---C
Confidence            35789999999999999999988888854444444444432 23333     221   244665633333332221   5


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +++|+++-|+|-
T Consensus       224 ~~~DvVlD~vg~  235 (347)
T KOG1198|consen  224 KGVDVVLDCVGG  235 (347)
T ss_pred             CCccEEEECCCC
Confidence            689999999996

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.42  E-value=0.0031  Score=46.05  Aligned_cols=75  Identities=15%  Similarity=0.222  Sum_probs=53.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCC--CCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           26 TAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNP--AAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++.|.|+ |++|..++..|+..|  .+|+++++++++++....++.....  ....... .  .+.+.           .
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~-----------l   66 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSD-----------C   66 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHH-----------h
Confidence            5788896 899999999999998  4899999999988887777754321  1112221 1  22221           1


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                      ..-|++|+++|...
T Consensus        67 ~~aDIVIitag~~~   80 (306)
T cd05291          67 KDADIVVITAGAPQ   80 (306)
T ss_pred             CCCCEEEEccCCCC
Confidence            35799999999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.40  E-value=0.00084  Score=48.67  Aligned_cols=42  Identities=21%  Similarity=0.306  Sum_probs=37.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR   62 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~   62 (138)
                      .++.+++++|+|. |++|+++++.|...|++|.++.|+.++..
T Consensus       147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~  188 (287)
T TIGR02853       147 FTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLA  188 (287)
T ss_pred             CCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4678999999999 67999999999999999999999876543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.39  E-value=0.0024  Score=48.34  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~   66 (138)
                      +++..+++|+||+|.+|+-+++.|.+.|+.|.++-|+.++.+.+..
T Consensus        76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~  121 (411)
T KOG1203|consen   76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG  121 (411)
T ss_pred             CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc
Confidence            4567899999999999999999999999999999999888777654

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.38  E-value=0.0012  Score=50.30  Aligned_cols=47  Identities=26%  Similarity=0.487  Sum_probs=39.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l   68 (138)
                      ++.+++++|.|+ |.+|..+++.|...|+ +|++++|+.+++..+...+
T Consensus       179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~  226 (423)
T PRK00045        179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF  226 (423)
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc
Confidence            478899999987 8999999999999997 8999999987776655443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.38  E-value=0.0038  Score=42.83  Aligned_cols=83  Identities=19%  Similarity=0.359  Sum_probs=58.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc---------------------chhHHHHHHHHhcCCCCeeEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM---------------------AAGRDVKVAIVMQNPAAKVDV   79 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~---------------------~~~~~~~~~l~~~~~~~~~~~   79 (138)
                      +++.+++|.|++ |+|.++++.|+..|. ++.+++.+.                     .+.+...+.+++..|..++..
T Consensus        17 L~~s~VlviG~g-glGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~   95 (198)
T cd01485          17 LRSAKVLIIGAG-ALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI   95 (198)
T ss_pred             HhhCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence            567889999885 699999999999998 688887541                     134445666777788888888


Q ss_pred             EEecCCC-HHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           80 MELDLSS-LASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        80 ~~~D~~~-~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      +..++.+ .+....++       ...|++|.+..
T Consensus        96 ~~~~~~~~~~~~~~~~-------~~~dvVi~~~d  122 (198)
T cd01485          96 VEEDSLSNDSNIEEYL-------QKFTLVIATEE  122 (198)
T ss_pred             EecccccchhhHHHHH-------hCCCEEEECCC
Confidence            7776653 23333332       25688887754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.38  E-value=0.0021  Score=48.96  Aligned_cols=46  Identities=22%  Similarity=0.410  Sum_probs=39.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~   67 (138)
                      .+.+++++|.|+ |.+|..+++.|...| .+|++++|+.+++.+....
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~  223 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE  223 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence            578899999997 899999999999999 5899999998776655543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.36  E-value=0.0014  Score=46.83  Aligned_cols=74  Identities=11%  Similarity=0.215  Sum_probs=54.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      .++|+|||+- |..+++.|.+.|++|+++.+.+...+....        .....+..+..+.+++..++.+     .++|
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~--------~g~~~v~~g~l~~~~l~~~l~~-----~~i~   67 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI--------HQALTVHTGALDPQELREFLKR-----HSID   67 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc--------cCCceEEECCCCHHHHHHHHHh-----cCCC
Confidence            5899999987 999999999999999998887765332211        1122344566677777777765     3799


Q ss_pred             EEEECccc
Q 042455          106 ILINKAGI  113 (138)
Q Consensus       106 ~lv~~ag~  113 (138)
                      ++|..+..
T Consensus        68 ~VIDAtHP   75 (256)
T TIGR00715        68 ILVDATHP   75 (256)
T ss_pred             EEEEcCCH
Confidence            99998864

This enzyme was found to be a monomer by gel filtration.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=97.35  E-value=0.0028  Score=46.10  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+++++|.++++.+.+.|++|+.+.++.++.+.
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~  185 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRW  185 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            57899999999999999999888899999998887765443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.35  E-value=0.0024  Score=44.81  Aligned_cols=79  Identities=19%  Similarity=0.232  Sum_probs=51.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..+.+++|+|+++ +|+++++.+...|.+|+++++++++.+.+ ..+     +...   ..|..+.+....+.   ....
T Consensus       133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~~~---~~~~  199 (271)
T cd05188         133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA-KEL-----GADH---VIDYKEEDLEEELR---LTGG  199 (271)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHh-----CCce---eccCCcCCHHHHHH---HhcC
Confidence            3578999999988 99999998888899999998886554432 222     2111   12333333333333   2233


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +.+|++++++|.
T Consensus       200 ~~~d~vi~~~~~  211 (271)
T cd05188         200 GGADVVIDAVGG  211 (271)
T ss_pred             CCCCEEEECCCC
Confidence            579999999875

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.32  E-value=0.0015  Score=47.25  Aligned_cols=39  Identities=26%  Similarity=0.349  Sum_probs=34.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ..+++||.++|.|+++-.|+.++..|++.|+.|.++.|.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            346899999999998779999999999999999988874

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.32  E-value=0.0016  Score=47.70  Aligned_cols=46  Identities=24%  Similarity=0.467  Sum_probs=38.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l   68 (138)
                      +.+++++|.|+ |.+|..+++.|...|. +|.+++|+.++..++..++
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~  222 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL  222 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc
Confidence            67899999988 8999999999998775 7999999988776655543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.31  E-value=0.0028  Score=42.64  Aligned_cols=66  Identities=24%  Similarity=0.283  Sum_probs=45.4

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH---------HHHHHhcCCCCeeEEEEecCCC
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV---------KVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~---------~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      ....++.|+++.|.|. |.||+++|+.+..-|++|+..+|........         ..++..   ...+..+.+..++
T Consensus        29 ~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~---~aDiv~~~~plt~  103 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLA---QADIVSLHLPLTP  103 (178)
T ss_dssp             TTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHH---H-SEEEE-SSSST
T ss_pred             CCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcc---hhhhhhhhhcccc
Confidence            3455789999999988 7999999999999999999999987654311         122222   3556677777654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=97.31  E-value=0.0022  Score=51.04  Aligned_cols=62  Identities=19%  Similarity=0.311  Sum_probs=48.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC----------------------cchhHHHHHHHHhcCCCCeeE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN----------------------MAAGRDVKVAIVMQNPAAKVD   78 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~----------------------~~~~~~~~~~l~~~~~~~~~~   78 (138)
                      +.+.+++|.|+ ||||..+++.|+..|. ++.+++.+                      ..+++.+.+.+++.+|..++.
T Consensus       336 L~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~  414 (664)
T TIGR01381       336 YSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQAT  414 (664)
T ss_pred             HhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEE
Confidence            46788999988 6999999999999998 79888752                      224555677788888888888


Q ss_pred             EEEecC
Q 042455           79 VMELDL   84 (138)
Q Consensus        79 ~~~~D~   84 (138)
                      .+...+
T Consensus       415 ~~~~~I  420 (664)
T TIGR01381       415 GHRLTV  420 (664)
T ss_pred             Eeeeee
Confidence            877664

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=97.31  E-value=0.0017  Score=47.25  Aligned_cols=41  Identities=24%  Similarity=0.339  Sum_probs=35.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+++++|.+.++.....|++|+.+++++++.+.
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~  183 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAW  183 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            57899999999999999988888889999988887766444

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.28  E-value=0.0012  Score=44.15  Aligned_cols=43  Identities=26%  Similarity=0.335  Sum_probs=37.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR   62 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~   62 (138)
                      .++.+|+++|+|++.-+|..+++.|.++|++|.++.|+.+.+.
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~   82 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK   82 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH
Confidence            4689999999999766899999999999999999999864433

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=97.28  E-value=0.0035  Score=45.04  Aligned_cols=79  Identities=19%  Similarity=0.337  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+++++|.++++.+...|++|+++.++++..+.+ ..+     +...   ..+....+....+... .. ..
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~~~~~-~~-~~  207 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL-----GADI---AINYREEDFVEVVKAE-TG-GK  207 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCcE---EEecCchhHHHHHHHH-cC-CC
Confidence            578999999999999999998889999999998876654432 221     2211   1233333333333222 11 13


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      .+|++++++|
T Consensus       208 ~~d~~i~~~~  217 (325)
T TIGR02824       208 GVDVILDIVG  217 (325)
T ss_pred             CeEEEEECCc
Confidence            5899999876

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK07411 hypothetical protein; Validated

Probab=97.27  E-value=0.0033  Score=47.55  Aligned_cols=82  Identities=22%  Similarity=0.364  Sum_probs=61.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +...+++|.|+ ||+|..+++.|+..|. ++.+++.+                   ..+.+...+.+++..|..++..+.
T Consensus        36 L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~  114 (390)
T PRK07411         36 LKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE  114 (390)
T ss_pred             HhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence            56788999988 6999999999999998 79888763                   235566677888888888888888


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..++. +....++.       ..|++|.+..
T Consensus       115 ~~~~~-~~~~~~~~-------~~D~Vvd~~d  137 (390)
T PRK07411        115 TRLSS-ENALDILA-------PYDVVVDGTD  137 (390)
T ss_pred             cccCH-HhHHHHHh-------CCCEEEECCC
Confidence            77764 33333332       4688888765

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.26  E-value=0.0065  Score=47.44  Aligned_cols=85  Identities=22%  Similarity=0.235  Sum_probs=55.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCH-------------H
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL-------------A   88 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-------------~   88 (138)
                      ..+.+++|+|+ |.+|+..++.+...|++|+++++++++.+.... +     +.+..  ..|..+.             +
T Consensus       163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-l-----GA~~v--~i~~~e~~~~~~gya~~~s~~  233 (509)
T PRK09424        163 VPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-M-----GAEFL--ELDFEEEGGSGDGYAKVMSEE  233 (509)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c-----CCeEE--Eeccccccccccchhhhcchh
Confidence            46889999998 699999999999999999999998877654332 2     44422  2232221             1


Q ss_pred             HHHHHHHHHHhcCCCccEEEECcccCC
Q 042455           89 SVRKFASDFTARALPLNILINKAGICG  115 (138)
Q Consensus        89 ~~~~~~~~~~~~~~~id~lv~~ag~~~  115 (138)
                      ..++..+.+.+.....|++|.++|..+
T Consensus       234 ~~~~~~~~~~~~~~gaDVVIetag~pg  260 (509)
T PRK09424        234 FIKAEMALFAEQAKEVDIIITTALIPG  260 (509)
T ss_pred             HHHHHHHHHHhccCCCCEEEECCCCCc
Confidence            122222222233356999999999743

>PLN00203 glutamyl-tRNA reductase

Probab=97.26  E-value=0.0029  Score=49.52  Aligned_cols=89  Identities=15%  Similarity=0.267  Sum_probs=59.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++.+++++|.|+ |.+|..+++.|...|+ +|+++.|+.++++.+...+    ++..+.+     ...++....+     
T Consensus       263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~----~g~~i~~-----~~~~dl~~al-----  327 (519)
T PLN00203        263 SHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF----PDVEIIY-----KPLDEMLACA-----  327 (519)
T ss_pred             CCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh----CCCceEe-----ecHhhHHHHH-----
Confidence            377999999999 8999999999999997 7999999988877765543    1222211     1222332222     


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHH
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELH  128 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~  128 (138)
                        ...|++|.+.+...|  ..+.+.+...
T Consensus       328 --~~aDVVIsAT~s~~p--vI~~e~l~~~  352 (519)
T PLN00203        328 --AEADVVFTSTSSETP--LFLKEHVEAL  352 (519)
T ss_pred             --hcCCEEEEccCCCCC--eeCHHHHHHh
Confidence              246999998876444  2344444443

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.25  E-value=0.0057  Score=44.91  Aligned_cols=105  Identities=10%  Similarity=0.076  Sum_probs=64.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH---HH--HHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR---DV--KVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~---~~--~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ..+.+|++.|.|. |.||+++|+.|...|++|+..++..+...   ..  ...+.+.....++..+.+..+.  +.+.++
T Consensus       132 ~~l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~--~T~~li  208 (312)
T PRK15469        132 YHREDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTP--ETVGII  208 (312)
T ss_pred             CCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCH--HHHHHh
Confidence            4578999999987 69999999999999999999887654311   00  1122222235667777777653  344454


Q ss_pred             H-HHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhh
Q 042455           95 S-DFTARALPLNILINKAGICGTPFMLSKDNIELHFAT  131 (138)
Q Consensus        95 ~-~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~  131 (138)
                      . +..+.+ +.+.++.|.|...   -++.+.+.+.++.
T Consensus       209 ~~~~l~~m-k~ga~lIN~aRG~---vVde~aL~~aL~~  242 (312)
T PRK15469        209 NQQLLEQL-PDGAYLLNLARGV---HVVEDDLLAALDS  242 (312)
T ss_pred             HHHHHhcC-CCCcEEEECCCcc---ccCHHHHHHHHhc
Confidence            3 234444 4466777777532   2344444444443

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=97.23  E-value=0.0041  Score=45.19  Aligned_cols=76  Identities=22%  Similarity=0.290  Sum_probs=55.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      ++|.|+ ||+|.++++.|+..|. ++.+++.+                   ..+++.+.+.+.+..|..++..+..++.+
T Consensus         2 VlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           2 ILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            678876 7999999999999997 78888653                   23456666777777888888888888875


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           87 LASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      .+  ..+       +..+|++|.+..
T Consensus        81 ~~--~~f-------~~~fdvVi~alD   97 (291)
T cd01488          81 KD--EEF-------YRQFNIIICGLD   97 (291)
T ss_pred             hh--HHH-------hcCCCEEEECCC
Confidence            32  122       235788887643

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=97.23  E-value=0.00017  Score=50.68  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=56.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHC-CC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALR-GV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~-g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +.....+||||+-|-+|..+|+.|-.+ |. +|++.+.-.....     ....  +   -++-.|+.|..+++.++-.  
T Consensus        41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~-----V~~~--G---PyIy~DILD~K~L~eIVVn--  108 (366)
T KOG2774|consen   41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN-----VTDV--G---PYIYLDILDQKSLEEIVVN--  108 (366)
T ss_pred             cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh-----hccc--C---CchhhhhhccccHHHhhcc--
Confidence            445568999999999999999988765 65 5777665443311     1111  2   2456788888888777654  


Q ss_pred             hcCCCccEEEECcccCC
Q 042455           99 ARALPLNILINKAGICG  115 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~  115 (138)
                         .+||.+|+-.+...
T Consensus       109 ---~RIdWL~HfSALLS  122 (366)
T KOG2774|consen  109 ---KRIDWLVHFSALLS  122 (366)
T ss_pred             ---cccceeeeHHHHHH
Confidence               48999999888653

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.22  E-value=0.011  Score=43.86  Aligned_cols=91  Identities=13%  Similarity=0.096  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH---HHHHhcCCCCeeEEEEecCCCHHHHHHHH-H
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK---VAIVMQNPAAKVDVMELDLSSLASVRKFA-S   95 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~---~~l~~~~~~~~~~~~~~D~~~~~~~~~~~-~   95 (138)
                      ..+.|+++.|.|. |.||.++|+.|...|++|++.++++.......   ..+.+......+..+.+..+..  ...++ +
T Consensus       142 ~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~--t~~li~~  218 (330)
T PRK12480        142 KPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKE--SYHLFDK  218 (330)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHH--HHHHHhH
Confidence            3588999999987 68999999999999999999998765422211   1222222356677777776542  22233 3


Q ss_pred             HHHhcCCCccEEEECcccC
Q 042455           96 DFTARALPLNILINKAGIC  114 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~  114 (138)
                      +..... +-+.++.|+|..
T Consensus       219 ~~l~~m-k~gavlIN~aRG  236 (330)
T PRK12480        219 AMFDHV-KKGAILVNAARG  236 (330)
T ss_pred             HHHhcC-CCCcEEEEcCCc
Confidence            344333 456677777753

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=97.20  E-value=0.006  Score=46.16  Aligned_cols=82  Identities=22%  Similarity=0.383  Sum_probs=59.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+.+++|.|+ ||+|..+++.|+..|. ++.+++.+.                   .+.+.+.+.+.+..|..++..+.
T Consensus        40 L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  118 (392)
T PRK07878         40 LKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE  118 (392)
T ss_pred             HhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence            46788999988 6999999999999998 788887631                   34555667777777778888777


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..++. +....++.       ..|++|.+..
T Consensus       119 ~~i~~-~~~~~~~~-------~~D~Vvd~~d  141 (392)
T PRK07878        119 FRLDP-SNAVELFS-------QYDLILDGTD  141 (392)
T ss_pred             ccCCh-hHHHHHHh-------cCCEEEECCC
Confidence            77753 23333332       4688887654

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.20  E-value=0.0043  Score=44.68  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=35.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+++++|+|+++++|.++++.+...|+++++++++.++.+.
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~  184 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDA  184 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            57899999999999999999999999999999887665444

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.18  E-value=0.0042  Score=45.80  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+ .++     +....   .|..+. ++.+    +....
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~l-----Ga~~v---i~~~~~-~~~~----~~~~~  233 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-REM-----GADKL---VNPQND-DLDH----YKAEK  233 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HHc-----CCcEE---ecCCcc-cHHH----HhccC
Confidence            5889999986 8999999987778898 688888887765433 223     33211   233222 2222    22223


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +.+|+++.++|.
T Consensus       234 g~~D~vid~~G~  245 (343)
T PRK09880        234 GYFDVSFEVSGH  245 (343)
T ss_pred             CCCCEEEECCCC
Confidence            568999999884

>PRK14851 hypothetical protein; Provisional

Probab=97.17  E-value=0.0059  Score=49.29  Aligned_cols=83  Identities=13%  Similarity=0.238  Sum_probs=61.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+.+++|.|+ ||+|..+++.|+..|. ++.+++.+                   ..+.+-+.+.+....|..++..+
T Consensus        40 kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~  118 (679)
T PRK14851         40 RLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF  118 (679)
T ss_pred             HHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            367889999986 7999999999999998 78888753                   13455566677777888888888


Q ss_pred             EecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           81 ELDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        81 ~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ...++ .+.+..+++       ..|++|.+.-
T Consensus       119 ~~~i~-~~n~~~~l~-------~~DvVid~~D  142 (679)
T PRK14851        119 PAGIN-ADNMDAFLD-------GVDVVLDGLD  142 (679)
T ss_pred             ecCCC-hHHHHHHHh-------CCCEEEECCC
Confidence            88885 445555543       4688776553

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.16  E-value=0.0024  Score=39.60  Aligned_cols=71  Identities=17%  Similarity=0.280  Sum_probs=50.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNI  106 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~  106 (138)
                      ++|.|. +.+|+.+++.|.+.+.+|++++++++..+++..    .  +  +.++.+|.++++.++++-      ..+.+.
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~--~--~~~i~gd~~~~~~l~~a~------i~~a~~   65 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E--G--VEVIYGDATDPEVLERAG------IEKADA   65 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T--T--SEEEES-TTSHHHHHHTT------GGCESE
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c--c--cccccccchhhhHHhhcC------ccccCE
Confidence            466777 589999999999977799999999877555432    2  2  668889999888876552      125677


Q ss_pred             EEECcc
Q 042455          107 LINKAG  112 (138)
Q Consensus       107 lv~~ag  112 (138)
                      +|....
T Consensus        66 vv~~~~   71 (116)
T PF02254_consen   66 VVILTD   71 (116)
T ss_dssp             EEEESS
T ss_pred             EEEccC
Confidence            766654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.16  E-value=0.0023  Score=48.89  Aligned_cols=57  Identities=19%  Similarity=0.148  Sum_probs=41.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      .++|.|+ |.+|..+++.|.++|..|++++++++..+.....       ..+.++.+|.++...+
T Consensus         2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l   58 (453)
T PRK09496          2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVL   58 (453)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHH
Confidence            5788887 8999999999999999999999988776554321       1244555666654443

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=97.15  E-value=0.0038  Score=45.50  Aligned_cols=58  Identities=19%  Similarity=0.298  Sum_probs=42.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc---------------------chhHHHHHHHHhcCCCCeeEEEEec
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV-HVIMADRNM---------------------AAGRDVKVAIVMQNPAAKVDVMELD   83 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~---------------------~~~~~~~~~l~~~~~~~~~~~~~~D   83 (138)
                      +++|.|+ ||+|..+++.|+..|. ++.+++.+.                     .+++.+.+.+++..|..++..+...
T Consensus         1 kVLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~   79 (307)
T cd01486           1 KCLLLGA-GTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS   79 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence            3677877 6999999999999998 788886521                     2345566677777777777776654


Q ss_pred             C
Q 042455           84 L   84 (138)
Q Consensus        84 ~   84 (138)
                      +
T Consensus        80 I   80 (307)
T cd01486          80 I   80 (307)
T ss_pred             c
Confidence            4

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.14  E-value=0.0057  Score=40.61  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=32.7

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      ...+.||+++|.|- |-+|+.+|+.|...|++|.++..++.++-+
T Consensus        18 ~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~alq   61 (162)
T PF00670_consen   18 NLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRALQ   61 (162)
T ss_dssp             -S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHH
T ss_pred             ceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHHHH
Confidence            45688999999987 699999999999999999999998765443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.12  E-value=0.0065  Score=44.97  Aligned_cols=42  Identities=26%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK   65 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   65 (138)
                      .|++++|+|.+ |+|...++.....|++|++++|++++.+...
T Consensus       166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~  207 (339)
T COG1064         166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAK  207 (339)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence            58999999998 9999888877778999999999998866543

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.09  E-value=0.0096  Score=44.10  Aligned_cols=90  Identities=11%  Similarity=0.097  Sum_probs=57.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH-----HHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK-----VAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~-----~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .++.||++.|.|. |.||+++|+.|...|++|+..+|.........     ..+.+......+..+.+.++.  +...++
T Consensus       146 ~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~--~T~~~i  222 (333)
T PRK13243        146 YDVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTK--ETYHMI  222 (333)
T ss_pred             cCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCCh--HHhhcc
Confidence            4689999999999 79999999999999999999988654321100     012222224567777777653  233333


Q ss_pred             -HHHHhcCCCccEEEECccc
Q 042455           95 -SDFTARALPLNILINKAGI  113 (138)
Q Consensus        95 -~~~~~~~~~id~lv~~ag~  113 (138)
                       ++..+.+ +.+.++.|.+.
T Consensus       223 ~~~~~~~m-k~ga~lIN~aR  241 (333)
T PRK13243        223 NEERLKLM-KPTAILVNTAR  241 (333)
T ss_pred             CHHHHhcC-CCCeEEEECcC
Confidence             2333333 45566666665

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.08  E-value=0.0038  Score=52.46  Aligned_cols=77  Identities=19%  Similarity=0.312  Sum_probs=58.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCC-CE-------------EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRG-VH-------------VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA   88 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g-~~-------------v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~   88 (138)
                      ..|.++|.|+ |.+|...++.|++.. +.             |.+++++.+.++++.+.+    +  .+..+++|++|.+
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~--~~~~v~lDv~D~e  640 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----E--NAEAVQLDVSDSE  640 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----C--CCceEEeecCCHH
Confidence            4678999997 899999999998753 33             777888877766555432    1  3567899999998


Q ss_pred             HHHHHHHHHHhcCCCccEEEECccc
Q 042455           89 SVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        89 ~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      ++.++++       .+|+||++...
T Consensus       641 ~L~~~v~-------~~DaVIsalP~  658 (1042)
T PLN02819        641 SLLKYVS-------QVDVVISLLPA  658 (1042)
T ss_pred             HHHHhhc-------CCCEEEECCCc
Confidence            8776655       37999999875

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.08  E-value=0.0039  Score=45.84  Aligned_cols=91  Identities=14%  Similarity=0.163  Sum_probs=58.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH-HH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD-FT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~   98 (138)
                      .++.||++.|.|. |.||+++|+.+..-|++|+..++...........+.+......+..+.+.++...  ..++.+ ..
T Consensus       144 ~~l~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T--~~li~~~~~  220 (317)
T PRK06487        144 VELEGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHT--RHLIGAREL  220 (317)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHH--hcCcCHHHH
Confidence            3689999999998 7999999999999999999888753211000111222222467888888877443  333322 22


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                      +.+ +.+.++.|+|..
T Consensus       221 ~~m-k~ga~lIN~aRG  235 (317)
T PRK06487        221 ALM-KPGALLINTARG  235 (317)
T ss_pred             hcC-CCCeEEEECCCc
Confidence            222 456777777753

>cd00704 MDH Malate dehydrogenase

Probab=97.07  E-value=0.0025  Score=47.02  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=47.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC-------EEEEEecCc--chhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV-------HVIMADRNM--AAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~-------~v~~~~r~~--~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      ++.|+|++|.+|..++..|+..|.       .++++++++  +.++....++.... +...    ...++         .
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~----~~~i~---------~   68 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLK----GVVIT---------T   68 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccC----CcEEe---------c
Confidence            578999999999999999998663       499999987  44333222222110 0000    00111         1


Q ss_pred             HHHhcCCCccEEEECcccCCC
Q 042455           96 DFTARALPLNILINKAGICGT  116 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~~  116 (138)
                      ...+.+...|++|+.||....
T Consensus        69 ~~~~~~~~aDiVVitAG~~~~   89 (323)
T cd00704          69 DPEEAFKDVDVAILVGAFPRK   89 (323)
T ss_pred             ChHHHhCCCCEEEEeCCCCCC
Confidence            112233468999999998643

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.06  E-value=0.0069  Score=44.15  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA   60 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~   60 (138)
                      .++.+++++|.|. |++|+.+++.|...|++|.+++|+.++
T Consensus       148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~  187 (296)
T PRK08306        148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAH  187 (296)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4567999999998 679999999999999999999998655

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.02  E-value=0.01  Score=40.92  Aligned_cols=40  Identities=15%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      +.+++||.++|.|| |.+|..-++.|++.|++|.+++.+..
T Consensus         4 ~l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         4 FANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             EEEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            34689999999998 58999999999999999999887543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]

Probab=97.01  E-value=0.013  Score=42.56  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             CCCEEEEeCCCCchHHHH--HHHHHHCCCE-EEEE-ec-----Ccch----hHHHHHHHHhcCCCCeeEEEEecCCCHHH
Q 042455           23 AGVTAIVTGASSGIGAET--TRVLALRGVH-VIMA-DR-----NMAA----GRDVKVAIVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~--a~~l~~~g~~-v~~~-~r-----~~~~----~~~~~~~l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      -.|.+||+|+++|.|++.  +..+- .|+. +-+. -|     ++..    ......+..... +-...-+..|.-+-+-
T Consensus        40 gPKkVLviGaSsGyGLa~RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~k-GlyAksingDaFS~e~  117 (398)
T COG3007          40 GPKKVLVIGASSGYGLAARISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQK-GLYAKSINGDAFSDEM  117 (398)
T ss_pred             CCceEEEEecCCcccHHHHHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhc-CceeeecccchhhHHH
Confidence            468999999999998874  33333 4554 3222 22     1111    111222222221 4556667889888888


Q ss_pred             HHHHHHHHHhcCCCccEEEECcccC
Q 042455           90 VRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      -+.+++.++..+|++|.+|++-+..
T Consensus       118 k~kvIe~Ik~~~g~vDlvvYSlAsp  142 (398)
T COG3007         118 KQKVIEAIKQDFGKVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhhccccEEEEeccCc
Confidence            8888999999999999999987754

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=97.01  E-value=0.0077  Score=43.81  Aligned_cols=41  Identities=29%  Similarity=0.353  Sum_probs=34.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+..++|.|+++++|.++++.....|++|+++.+++++.+.
T Consensus       139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~  179 (329)
T cd08250         139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEF  179 (329)
T ss_pred             CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHH
Confidence            57899999999999999988888889999998887665443

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=97.00  E-value=0.0079  Score=43.51  Aligned_cols=80  Identities=20%  Similarity=0.229  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+.+++|+|+++++|.++++.+...|++|+.++++.++.+.+ .++     +...   ..|..+.+..+.+... . ...
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~~~~~-~-~~~  210 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RAL-----GADV---AVDYTRPDWPDQVREA-L-GGG  210 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc-----CCCE---EEecCCccHHHHHHHH-c-CCC
Confidence            477899999999999999998888999999998877665443 222     2211   1233333333332221 1 112


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|+++++.|.
T Consensus       211 ~~d~vl~~~g~  221 (324)
T cd08244         211 GVTVVLDGVGG  221 (324)
T ss_pred             CceEEEECCCh
Confidence            58999998763

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.99  E-value=0.0041  Score=40.36  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+++||.++|.|.+..+|+.++..|.++|+.|.++.++...+++
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~   67 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS   67 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH
Confidence            47899999999999999999999999999999999876544443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.99  E-value=0.0022  Score=45.76  Aligned_cols=78  Identities=14%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHCC----CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           27 AIVTGASSGIGAETTRVLALRG----VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g----~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +.|+|++|.+|..++..|+..|    .+|++++.++++++....+++......  .....-.++  +....       +.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~--~~~~i~~~~--d~~~~-------~~   69 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL--ADIKVSITD--DPYEA-------FK   69 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc--cCcEEEECC--chHHH-------hC
Confidence            3689998899999999999988    589999999988877777765442111  001111111  11111       23


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      .-|++|..+|..+
T Consensus        70 ~aDiVv~t~~~~~   82 (263)
T cd00650          70 DADVVIITAGVGR   82 (263)
T ss_pred             CCCEEEECCCCCC
Confidence            4799999998754

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.97  E-value=0.012  Score=44.00  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~  100 (138)
                      .+.+++|+|+ +++|...++.....|+ +|+++++++++.+.+ .++     +...   ..|..+ .+.+...+.++.. 
T Consensus       185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~-----Ga~~---~i~~~~~~~~~~~~v~~~~~-  253 (368)
T TIGR02818       185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKL-----GATD---CVNPNDYDKPIQEVIVEITD-  253 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCCe---EEcccccchhHHHHHHHHhC-
Confidence            5789999985 8999999887777898 799998887765543 222     3221   223322 1223333333322 


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                       +.+|++|.++|
T Consensus       254 -~g~d~vid~~G  264 (368)
T TIGR02818       254 -GGVDYSFECIG  264 (368)
T ss_pred             -CCCCEEEECCC
Confidence             36899998877

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.97  E-value=0.017  Score=38.30  Aligned_cols=88  Identities=23%  Similarity=0.214  Sum_probs=56.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC-----CCeeEEEEecCCCHHHHHHHHHH--H
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP-----AAKVDVMELDLSSLASVRKFASD--F   97 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~--~   97 (138)
                      +++-++|. |.+|..+++.|++.|++|.+.+|++++.+++...-.....     -.....+-.=+.+.+.+++++..  +
T Consensus         2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i   80 (163)
T PF03446_consen    2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI   80 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred             CEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence            46777887 7999999999999999999999998877665432100000     01123344445677888888887  7


Q ss_pred             HhcCCCccEEEECccc
Q 042455           98 TARALPLNILINKAGI  113 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~  113 (138)
                      .....+=.++|.+...
T Consensus        81 ~~~l~~g~iiid~sT~   96 (163)
T PF03446_consen   81 LAGLRPGKIIIDMSTI   96 (163)
T ss_dssp             GGGS-TTEEEEE-SS-
T ss_pred             hhccccceEEEecCCc
Confidence            7766666777766654

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.96  E-value=0.013  Score=43.39  Aligned_cols=40  Identities=25%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+ +++|...++.+...|++|+++++++++.+.
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~  205 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEM  205 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            4789999999 999999988888889999999888776554

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.96  E-value=0.007  Score=46.82  Aligned_cols=77  Identities=17%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             CCCCCEEEEeCCC----------------CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           21 DAAGVTAIVTGAS----------------SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        21 ~~~~k~~litG~~----------------~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      ++.||++|||+|.                |-.|+++|+.+...|++|.+++-....        .  . ...+..+.  +
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~--------~--~-p~~v~~i~--V  319 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDL--------A--D-PQGVKVIH--V  319 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCC--------C--C-CCCceEEE--e
Confidence            5899999999763                458999999999999999998754211        0  1 22244443  3


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           85 SSLASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      .+..++.+.+.+   .+. .|++|.+|++.
T Consensus       320 ~ta~eM~~av~~---~~~-~Di~I~aAAVa  345 (475)
T PRK13982        320 ESARQMLAAVEA---ALP-ADIAIFAAAVA  345 (475)
T ss_pred             cCHHHHHHHHHh---hCC-CCEEEEecccc
Confidence            345555444443   333 69999999986

>PLN02928 oxidoreductase family protein

Probab=96.95  E-value=0.0088  Score=44.56  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .++.||++.|.|. |.||+++|+.+...|++|+.++|+.
T Consensus       155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~  192 (347)
T PLN02928        155 DTLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSW  192 (347)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCC
Confidence            3688999999998 7999999999999999999998863

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=96.95  E-value=0.011  Score=42.44  Aligned_cols=41  Identities=20%  Similarity=0.303  Sum_probs=35.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+++++|.++++.....|++|+.+.+++++.+.
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  182 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAAL  182 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            57899999999999999999888899999988887765443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02740 Alcohol dehydrogenase-like

Probab=96.93  E-value=0.011  Score=44.37  Aligned_cols=79  Identities=18%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCH-HHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL-ASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~  100 (138)
                      .+++++|.|+ +++|...++.+...|+ +|+++++++++.+.+. ++     +...   ..|..+. +.+...+.+... 
T Consensus       198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~-~~-----Ga~~---~i~~~~~~~~~~~~v~~~~~-  266 (381)
T PLN02740        198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGK-EM-----GITD---FINPKDSDKPVHERIREMTG-  266 (381)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH-Hc-----CCcE---EEecccccchHHHHHHHHhC-
Confidence            5789999985 8999999988888898 6999988877655432 22     3221   1233221 123333333322 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                       +.+|+++.++|.
T Consensus       267 -~g~dvvid~~G~  278 (381)
T PLN02740        267 -GGVDYSFECAGN  278 (381)
T ss_pred             -CCCCEEEECCCC
Confidence             258888888884

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=96.93  E-value=0.0076  Score=43.72  Aligned_cols=42  Identities=26%  Similarity=0.389  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+++++|.|+++++|.++++.....|++|+++++++++.+.+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~  187 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL  187 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence            367999999999999999998888999999998887665443

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK04148 hypothetical protein; Provisional

Probab=96.91  E-value=0.0029  Score=40.67  Aligned_cols=54  Identities=20%  Similarity=0.167  Sum_probs=41.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      +++.++++|.+  .|.++|..|.+.|++|++++.++...+.....        .+.++..|+.+
T Consensus        16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~   69 (134)
T PRK04148         16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFN   69 (134)
T ss_pred             cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCC
Confidence            45789999987  77788999999999999999998865554322        24667777765

>PRK14852 hypothetical protein; Provisional

Probab=96.91  E-value=0.012  Score=49.11  Aligned_cols=82  Identities=15%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+.+|+|.|+ ||+|..+++.|+..|. ++.+++-+                   ..+++.+.+.+++..|..++..+.
T Consensus       330 L~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        330 LLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             HhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            56788999986 6999999999999997 78888653                   235566677777778888888887


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..++ .+.+..+++       ..|++|.+.-
T Consensus       409 ~~I~-~en~~~fl~-------~~DiVVDa~D  431 (989)
T PRK14852        409 EGVA-AETIDAFLK-------DVDLLVDGID  431 (989)
T ss_pred             cCCC-HHHHHHHhh-------CCCEEEECCC
Confidence            7774 455555443       4688876553

>PLN03139 formate dehydrogenase; Provisional

Probab=96.91  E-value=0.023  Score=42.97  Aligned_cols=91  Identities=20%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH-------HHHHHhcCCCCeeEEEEecCCCHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV-------KVAIVMQNPAAKVDVMELDLSSLASVR   91 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~-------~~~l~~~~~~~~~~~~~~D~~~~~~~~   91 (138)
                      ..++.||++.|.|. |.||+++++.|...|++|+..++.....+..       ...+.+..+...+..+.+..+  ++.+
T Consensus       194 ~~~L~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt--~~T~  270 (386)
T PLN03139        194 AYDLEGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLT--EKTR  270 (386)
T ss_pred             CcCCCCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCC--HHHH
Confidence            35689999999996 7899999999999999998888764221110       012222223456777666654  3455


Q ss_pred             HHHH-HHHhcCCCccEEEECccc
Q 042455           92 KFAS-DFTARALPLNILINKAGI  113 (138)
Q Consensus        92 ~~~~-~~~~~~~~id~lv~~ag~  113 (138)
                      .++. +..+.+ +.+.++.|.|.
T Consensus       271 ~li~~~~l~~m-k~ga~lIN~aR  292 (386)
T PLN03139        271 GMFNKERIAKM-KKGVLIVNNAR  292 (386)
T ss_pred             HHhCHHHHhhC-CCCeEEEECCC
Confidence            5553 333444 34556666664

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.90  E-value=0.0077  Score=44.16  Aligned_cols=78  Identities=19%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+.+++|+|+ +++|...++.+...|++ |+++++++++.+.+ .++     +...   ..|..+.+ .+++. +.. ..
T Consensus       163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~-----ga~~---~i~~~~~~-~~~~~-~~~-~~  229 (339)
T cd08239         163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KAL-----GADF---VINSGQDD-VQEIR-ELT-SG  229 (339)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCCE---EEcCCcch-HHHHH-HHh-CC
Confidence            4889999986 89999999988888997 99888877665433 233     3211   22333333 33322 221 11


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.+.|.
T Consensus       230 ~~~d~vid~~g~  241 (339)
T cd08239         230 AGADVAIECSGN  241 (339)
T ss_pred             CCCCEEEECCCC
Confidence            258999988773

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.89  E-value=0.019  Score=44.14  Aligned_cols=38  Identities=26%  Similarity=0.523  Sum_probs=33.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      ++.|+||.|.+|.++++.|.+.|.+|.+++|+++...+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~   39 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE   39 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHH
Confidence            58899999999999999999999999999998766433

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=96.89  E-value=0.014  Score=43.54  Aligned_cols=78  Identities=15%  Similarity=0.131  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCH-HHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL-ASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~  100 (138)
                      .+.+++|.|+ +++|...++.+...|+ +|+++++++++.+.+ .++     +...   ..|..+. +++...+.+... 
T Consensus       186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l-----Ga~~---~i~~~~~~~~~~~~v~~~~~-  254 (368)
T cd08300         186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF-----GATD---CVNPKDHDKPIQQVLVEMTD-  254 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc-----CCCE---EEcccccchHHHHHHHHHhC-
Confidence            4789999975 8999999988888899 699999888775543 222     3221   1233332 234444444332 


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                       +.+|+++.++|
T Consensus       255 -~g~d~vid~~g  265 (368)
T cd08300         255 -GGVDYTFECIG  265 (368)
T ss_pred             -CCCcEEEECCC
Confidence             36899999877

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=96.89  E-value=0.0078  Score=43.59  Aligned_cols=41  Identities=27%  Similarity=0.290  Sum_probs=34.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+++++|.++++.....|++++++.++.++.+.
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~  179 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAE  179 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHH
Confidence            57899999999999999999888899999888877665444

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PLN02602 lactate dehydrogenase

Probab=96.88  E-value=0.02  Score=42.76  Aligned_cols=77  Identities=13%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCC-CeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPA-AKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++.|+|+ |.+|..++..++..+.  .+++++.+++.++....+|....+- ... -+... .+.+       .    +
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~~-~dy~-------~----~  103 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILAS-TDYA-------V----T  103 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEeC-CCHH-------H----h
Confidence            58999996 8999999999998875  7999999998887777777644210 111 11111 1222       1    1


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                      ..-|++|..||...
T Consensus       104 ~daDiVVitAG~~~  117 (350)
T PLN02602        104 AGSDLCIVTAGARQ  117 (350)
T ss_pred             CCCCEEEECCCCCC
Confidence            35699999999864

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.0014  Score=47.19  Aligned_cols=84  Identities=13%  Similarity=0.106  Sum_probs=59.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|.++|||+++-||.-.+..+...  .++.+.++.-.--..  ...+++.....+..+++.|+.+...+..++.+     
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~-----   78 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPVRNSPNYKFVEGDIADADLVLYLFET-----   78 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhhccCCCceEeeccccchHHHHhhhcc-----
Confidence            388999999999999999999986  345555433111000  12222222256789999999999998887765     


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                      .+||.++|.|+..
T Consensus        79 ~~id~vihfaa~t   91 (331)
T KOG0747|consen   79 EEIDTVIHFAAQT   91 (331)
T ss_pred             CchhhhhhhHhhh
Confidence            4899999999865

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.87  E-value=0.0084  Score=45.86  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      ...+.++|.|+ |.+|..+++.|.+.|.+|++++++++..+......      ..+..+..|.++.+.+
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L  290 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELL  290 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHH
Confidence            34678999998 89999999999999999999999887655543321      1234556666655544

>PRK05086 malate dehydrogenase; Provisional

Probab=96.87  E-value=0.017  Score=42.47  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=28.1

Q ss_pred             CEEEEeCCCCchHHHHHHHHHH-C--CCEEEEEecCcc
Q 042455           25 VTAIVTGASSGIGAETTRVLAL-R--GVHVIMADRNMA   59 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~-~--g~~v~~~~r~~~   59 (138)
                      ++++|+||+|++|.+++..+.. .  +..++++++++.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~   38 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV   38 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence            3689999999999999998865 3  347888888743

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=96.87  E-value=0.0074  Score=43.15  Aligned_cols=42  Identities=24%  Similarity=0.221  Sum_probs=35.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+.+++|.|+++++|.++++.....|++|+++.+++++.+.+
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  177 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA  177 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            578999999999999999998888899998888877665443

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=96.86  E-value=0.0087  Score=42.90  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=35.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|+|+++++|.+++..+...|+.|+.++++.++.+.
T Consensus       139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~  179 (323)
T cd08241         139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLAL  179 (323)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence            57899999999999999999888899999998887655443

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.86  E-value=0.0043  Score=43.09  Aligned_cols=42  Identities=19%  Similarity=0.318  Sum_probs=36.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~   67 (138)
                      ++.|+|++|.+|.++++.|++.|++|.+.+|++++.+.+...
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~   43 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAK   43 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHH
Confidence            478999999999999999999999999999998877665443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=96.85  E-value=0.021  Score=41.42  Aligned_cols=42  Identities=14%  Similarity=0.285  Sum_probs=34.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+.+++|.|+++++|+++++.+...|++++++.+++++.+.+
T Consensus       140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  181 (334)
T PTZ00354        140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC  181 (334)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999889999888888776554443

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=96.84  E-value=0.0088  Score=43.39  Aligned_cols=62  Identities=23%  Similarity=0.340  Sum_probs=47.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEE
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      .+.+.+++|.|+ +|+|.++++.|+..|. ++.+++.+.                   .+++.....|++..|..++..+
T Consensus        16 kL~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~   94 (286)
T cd01491          16 KLQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS   94 (286)
T ss_pred             HHhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence            356788999988 6999999999999998 688887532                   3455566777777777777666


Q ss_pred             Eec
Q 042455           81 ELD   83 (138)
Q Consensus        81 ~~D   83 (138)
                      ..+
T Consensus        95 ~~~   97 (286)
T cd01491          95 TGP   97 (286)
T ss_pred             ecc
Confidence            654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.84  E-value=0.016  Score=43.14  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=32.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+++++|.|+ +++|...++.....|++|++++.+.++..+.
T Consensus       183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~  223 (360)
T PLN02586        183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEA  223 (360)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhH
Confidence            5789999775 8999999888888899988887776554433

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=96.83  E-value=0.018  Score=42.91  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=49.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCH-HHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL-ASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~  100 (138)
                      .+.+++|.|+ +++|...++.+...|+ +|+++++++++.+.+ .++     +...   ..|..+. +.+.+.+.+... 
T Consensus       187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~-----Ga~~---~i~~~~~~~~~~~~v~~~~~-  255 (369)
T cd08301         187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKF-----GVTE---FVNPKDHDKPVQEVIAEMTG-  255 (369)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCce---EEcccccchhHHHHHHHHhC-
Confidence            5789999985 8999998888778898 799998887665543 222     3221   1122221 234444444332 


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                       +.+|+++.+.|
T Consensus       256 -~~~d~vid~~G  266 (369)
T cd08301         256 -GGVDYSFECTG  266 (369)
T ss_pred             -CCCCEEEECCC
Confidence             26898888876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=96.82  E-value=0.0097  Score=43.02  Aligned_cols=41  Identities=22%  Similarity=0.219  Sum_probs=35.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+++++|.++++.+...|++++++.+++++.+.
T Consensus       138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~  178 (323)
T cd05282         138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEE  178 (323)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHH
Confidence            57799999999999999999888999999888887765443

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.82  E-value=0.0039  Score=45.35  Aligned_cols=81  Identities=14%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -+|.+++|++|++..|.-+.+--.-+|++|+.+.-.+++-.-+.+++     +...   ..|--.. ++.+.+.+..-  
T Consensus       149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l-----GfD~---~idyk~~-d~~~~L~~a~P--  217 (340)
T COG2130         149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL-----GFDA---GIDYKAE-DFAQALKEACP--  217 (340)
T ss_pred             CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc-----CCce---eeecCcc-cHHHHHHHHCC--
Confidence            36899999999999997655533346999999988888766555544     3221   2233222 33333333221  


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..||+.+-|.|-
T Consensus       218 ~GIDvyfeNVGg  229 (340)
T COG2130         218 KGIDVYFENVGG  229 (340)
T ss_pred             CCeEEEEEcCCc
Confidence            369999999994

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.82  E-value=0.041  Score=43.06  Aligned_cols=85  Identities=24%  Similarity=0.238  Sum_probs=56.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC-------------CH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS-------------SL   87 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-------------~~   87 (138)
                      ...+.+++|.|+ |.+|...++.+...|++|++++++.++.+... .+     +..  ++..|..             +.
T Consensus       161 ~vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~-~l-----Ga~--~v~v~~~e~g~~~~gYa~~~s~  231 (511)
T TIGR00561       161 KVPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SM-----GAE--FLELDFKEEGGSGDGYAKVMSE  231 (511)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCe--EEeccccccccccccceeecCH
Confidence            345679999997 79999999999999999999999877644322 22     332  2233321             13


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           88 ASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      +..+...+...++....|++|+++-+.
T Consensus       232 ~~~~~~~~~~~e~~~~~DIVI~Talip  258 (511)
T TIGR00561       232 EFIAAEMELFAAQAKEVDIIITTALIP  258 (511)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcccC
Confidence            344444444455556799999999443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=96.80  E-value=0.0027  Score=36.55  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=21.8

Q ss_pred             CC-CEEEEeCCCCchHHH--HHHHHHHCCCEEEEEecC
Q 042455           23 AG-VTAIVTGASSGIGAE--TTRVLALRGVHVIMADRN   57 (138)
Q Consensus        23 ~~-k~~litG~~~~iG~~--~a~~l~~~g~~v~~~~r~   57 (138)
                      ++ |++||+|+++|.|++  ++..+ ..|++.+-++..
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~fE   73 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVSFE   73 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE--
T ss_pred             CCCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEeec
Confidence            44 899999999999999  44444 557776666543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.80  E-value=0.0054  Score=41.44  Aligned_cols=41  Identities=24%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~   67 (138)
                      ++.|.|+ |.+|..+|..++..|++|.+++++++.++.....
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~   41 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKR   41 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhH
Confidence            4678888 8999999999999999999999998776554433

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07574 formate dehydrogenase; Provisional

Probab=96.80  E-value=0.022  Score=43.06  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=63.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH-------HHHHHhcCCCCeeEEEEecCCCHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV-------KVAIVMQNPAAKVDVMELDLSSLASVRK   92 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~-------~~~l~~~~~~~~~~~~~~D~~~~~~~~~   92 (138)
                      .++.||++.|.|. |.||+++|+.|...|++|+..+|.....+..       ...+.+......+..+.+.++.  +.+.
T Consensus       188 ~~L~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~--~T~~  264 (385)
T PRK07574        188 YDLEGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHP--ETEH  264 (385)
T ss_pred             eecCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCH--HHHH
Confidence            4688999999998 6899999999999999999999875211100       1122222335667777777653  4445


Q ss_pred             HHH-HHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhh
Q 042455           93 FAS-DFTARALPLNILINKAGICGTPFMLSKDNIELHFAT  131 (138)
Q Consensus        93 ~~~-~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~  131 (138)
                      ++. +..+.+ +-..++.|.+...   -++.+.+.+.++.
T Consensus       265 li~~~~l~~m-k~ga~lIN~aRG~---iVDe~AL~~AL~s  300 (385)
T PRK07574        265 LFDADVLSRM-KRGSYLVNTARGK---IVDRDAVVRALES  300 (385)
T ss_pred             HhCHHHHhcC-CCCcEEEECCCCc---hhhHHHHHHHHHh
Confidence            553 233444 3345555555432   2344444444443

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.80  E-value=0.0026  Score=43.78  Aligned_cols=39  Identities=15%  Similarity=0.349  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++++++|.++|+|| |.+|...++.|++.|++|.++++..
T Consensus         5 ~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          5 MIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             EEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45789999999999 7999999999999999999987653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.76  E-value=0.03  Score=35.45  Aligned_cols=80  Identities=16%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHH-CCCEE-EEEecCcch-h----H-------------HHHHHHHhcCCCCeeEEEEecCC
Q 042455           26 TAIVTGASSGIGAETTRVLAL-RGVHV-IMADRNMAA-G----R-------------DVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~-~g~~v-~~~~r~~~~-~----~-------------~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      ++.|+|++|-+|+.+++.+.+ .+.++ ..++|+++. .    .             ...+.+...      .-+..|+|
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~------~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE------ADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-------SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc------CCEEEEcC
Confidence            478999999999999999999 57775 445666510 0    0             011112111      11567999


Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEECccc
Q 042455           86 SLASVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      .++.+...++...+.  ++.+++-..|.
T Consensus        76 ~p~~~~~~~~~~~~~--g~~~ViGTTG~  101 (124)
T PF01113_consen   76 NPDAVYDNLEYALKH--GVPLVIGTTGF  101 (124)
T ss_dssp             -HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred             ChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence            999999999988776  78999888885

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.76  E-value=0.0061  Score=45.00  Aligned_cols=74  Identities=18%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC-------EEEEEecCcch--hHHHHHHHHhcCCCCeeEEEEecCCCHHH-H-HHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV-------HVIMADRNMAA--GRDVKVAIVMQNPAAKVDVMELDLSSLAS-V-RKFA   94 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~-------~v~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~D~~~~~~-~-~~~~   94 (138)
                      ++.|+|++|.+|..++..|+..+.       .++++++++..  ++.                ...|+.+... . ..+.
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g----------------~~~Dl~d~~~~~~~~~~   64 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEG----------------VVMELMDCAFPLLDGVV   64 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccce----------------eEeehhcccchhcCcee
Confidence            378999999999999999998653       49999986543  222                2333333220 0 0000


Q ss_pred             --HHHHhcCCCccEEEECcccCC
Q 042455           95 --SDFTARALPLNILINKAGICG  115 (138)
Q Consensus        95 --~~~~~~~~~id~lv~~ag~~~  115 (138)
                        ....+.+...|++|+.||...
T Consensus        65 ~~~~~~~~~~~aDiVVitAG~~~   87 (324)
T TIGR01758        65 PTHDPAVAFTDVDVAILVGAFPR   87 (324)
T ss_pred             ccCChHHHhCCCCEEEEcCCCCC
Confidence              011233456899999999754

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.75  E-value=0.0041  Score=41.13  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=32.7

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR   56 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r   56 (138)
                      .++++||.++|.|| |.+|...++.|++.|++|.+++.
T Consensus         8 ~l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719          8 MFNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             EEEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC
Confidence            45789999999998 68999999999999999988853

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.01  Score=45.72  Aligned_cols=66  Identities=24%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEEe
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVMEL   82 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~   82 (138)
                      .+.++|++|| ||||.++-+.|+-.|. .|.+++.+.                   +++.-+....+.-.|..++..++.
T Consensus        11 ~~~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yha   89 (603)
T KOG2013|consen   11 KSGRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHA   89 (603)
T ss_pred             ccCeEEEEec-CcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEeccc
Confidence            5678999998 6999999999999998 688887643                   222222233333344556666666


Q ss_pred             cCCCHHH
Q 042455           83 DLSSLAS   89 (138)
Q Consensus        83 D~~~~~~   89 (138)
                      |+.+++.
T Consensus        90 nI~e~~f   96 (603)
T KOG2013|consen   90 NIKEPKF   96 (603)
T ss_pred             cccCcch
Confidence            6665533

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.74  E-value=0.015  Score=42.58  Aligned_cols=41  Identities=22%  Similarity=0.261  Sum_probs=35.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+++++|.++++.+...|++|+++.+++++.+.
T Consensus       165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~  205 (341)
T cd08297         165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLEL  205 (341)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            47899999999999999999888999999999988766543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.74  E-value=0.021  Score=43.81  Aligned_cols=77  Identities=19%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.+|+++|+|.+ +.|.++|+.|+++|+.|.+.+......  ...++....  ..+.++..... ..    .+      
T Consensus         2 ~~~~~~~~v~G~g-~~G~~~a~~l~~~g~~v~~~d~~~~~~--~~~~l~~~~--~gi~~~~g~~~-~~----~~------   65 (445)
T PRK04308          2 TFQNKKILVAGLG-GTGISMIAYLRKNGAEVAAYDAELKPE--RVAQIGKMF--DGLVFYTGRLK-DA----LD------   65 (445)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCCCch--hHHHHhhcc--CCcEEEeCCCC-HH----HH------
Confidence            3568999999986 999999999999999999998765431  122343221  12333332211 11    11      


Q ss_pred             CCCccEEEECcccC
Q 042455          101 ALPLNILINKAGIC  114 (138)
Q Consensus       101 ~~~id~lv~~ag~~  114 (138)
                       ...|.||.+.|+.
T Consensus        66 -~~~d~vv~spgi~   78 (445)
T PRK04308         66 -NGFDILALSPGIS   78 (445)
T ss_pred             -hCCCEEEECCCCC
Confidence             2479999999985

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.73  E-value=0.032  Score=41.18  Aligned_cols=40  Identities=15%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGR   62 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~   62 (138)
                      +..+++.|+|+ |.+|..++..++..|. .|++++.+++.+.
T Consensus         4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~   44 (321)
T PTZ00082          4 IKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ   44 (321)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhh
Confidence            44578999995 7899999999999995 8999999988654

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.72  E-value=0.033  Score=40.97  Aligned_cols=77  Identities=12%  Similarity=0.144  Sum_probs=52.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCe-eEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAK-VDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .++.|+|+ |.+|..++..|+..|.  .+++++.+++.++....++....+-.. ......  .|++.           +
T Consensus         4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~~-----------~   69 (312)
T cd05293           4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYSV-----------T   69 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHHH-----------h
Confidence            47889996 9999999999998874  799999999888777777765431111 111111  12221           2


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                      ..-|++|.++|...
T Consensus        70 ~~adivvitaG~~~   83 (312)
T cd05293          70 ANSKVVIVTAGARQ   83 (312)
T ss_pred             CCCCEEEECCCCCC
Confidence            35699999999764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.71  E-value=0.012  Score=43.18  Aligned_cols=104  Identities=10%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH--HHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH-
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD--VKVAIVMQNPAAKVDVMELDLSSLASVRKFASD-   96 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~-   96 (138)
                      .++.||++.|.|- |.||+++|+.+..-|++|+..++.....+.  ....+.+......+..+.+.+++..  ..++.+ 
T Consensus       141 ~~L~gktvGIiG~-G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T--~~li~~~  217 (311)
T PRK08410        141 GEIKGKKWGIIGL-GTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKT--KNLIAYK  217 (311)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchh--hcccCHH
Confidence            4689999999998 799999999999899999998875321110  0011222222467888888887543  233322 


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhh
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFA  130 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~  130 (138)
                      ..+.+ +.+.++.|.|...   -++++.+.+.++
T Consensus       218 ~~~~M-k~~a~lIN~aRG~---vVDe~AL~~AL~  247 (311)
T PRK08410        218 ELKLL-KDGAILINVGRGG---IVNEKDLAKALD  247 (311)
T ss_pred             HHHhC-CCCeEEEECCCcc---ccCHHHHHHHHH
Confidence            22222 4677777777532   234444444444

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.71  E-value=0.015  Score=34.25  Aligned_cols=36  Identities=33%  Similarity=0.543  Sum_probs=31.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEec
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADR   56 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r   56 (138)
                      .++++|+++|.|+ ++.|..+++.|.+. +.++.+++|
T Consensus        19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4578899999999 89999999999998 457888776

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.70  E-value=0.0059  Score=43.96  Aligned_cols=43  Identities=16%  Similarity=0.300  Sum_probs=37.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~   67 (138)
                      +|+++|.|+ ||-+++++..|.+.|+ +|.++.|+.++++++.+.
T Consensus       122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~  165 (272)
T PRK12550        122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL  165 (272)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence            568999997 7999999999999998 699999998887776554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.68  E-value=0.0018  Score=39.67  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      +++++|.++|+|+ |.+|..-++.|++.|++|.+++...
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence            5689999999999 7999999999999999999998875

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.68  E-value=0.032  Score=43.17  Aligned_cols=76  Identities=16%  Similarity=0.153  Sum_probs=50.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++.++|.|+ |++|.++|+.|.+.|++|.++++++.. .......++..  +  +.++..+-..             
T Consensus        13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~--g--v~~~~~~~~~-------------   74 (480)
T PRK01438         13 DWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL--G--ATVRLGPGPT-------------   74 (480)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc--C--CEEEECCCcc-------------
Confidence            467889999997 679999999999999999999866543 33333445433  3  3333222111             


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                      .....|.+|.+.|+.
T Consensus        75 ~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         75 LPEDTDLVVTSPGWR   89 (480)
T ss_pred             ccCCCCEEEECCCcC
Confidence            013579999999985

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=96.67  E-value=0.028  Score=42.24  Aligned_cols=41  Identities=17%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|+|+++++|.+++......|++++++.+++++.+.
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~  233 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEY  233 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence            47899999999999999998888889998888877666544

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.67  E-value=0.009  Score=43.29  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .+++||.++|+|.+.-+|+.++..|..+|++|.++.+...
T Consensus       154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~  193 (286)
T PRK14175        154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK  193 (286)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence            4689999999999999999999999999999999887543

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=96.66  E-value=0.023  Score=43.11  Aligned_cols=43  Identities=12%  Similarity=0.143  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC---EEEEEecCcchhHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV---HVIMADRNMAAGRDVK   65 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~---~v~~~~r~~~~~~~~~   65 (138)
                      .+.+++|.|+++++|...++.+...|.   +|+++++++++.+...
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~  220 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQ  220 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHH
Confidence            467999999999999998886666543   7999998887765543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=96.66  E-value=0.026  Score=41.29  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .+++++|.|+++++|.++++.....|++++++.++.+
T Consensus       146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~  182 (341)
T cd08290         146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRP  182 (341)
T ss_pred             CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            5789999999999999999988889999888877653

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.66  E-value=0.04  Score=40.56  Aligned_cols=83  Identities=20%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|-++||.|| +-||+..-...-.-|+ +|++++-.+++++-..+ +     +.++......-++.+.+.+.++......
T Consensus       169 ~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~-----Ga~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  169 KGSKVLVLGA-GPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F-----GATVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h-----CCeEEeeccccccHHHHHHHHHhhcccc
Confidence            4678999998 5899888777777787 79999998888776554 4     5554444333334566656655554322


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                       .+|+.|.|.|.
T Consensus       242 -~~d~~~dCsG~  252 (354)
T KOG0024|consen  242 -QPDVTFDCSGA  252 (354)
T ss_pred             -CCCeEEEccCc
Confidence             39999999996

>PRK07877 hypothetical protein; Provisional

Probab=96.64  E-value=0.017  Score=47.03  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecC------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRN------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ | +|..++..|+..|.  ++.+++.+                  ..|.+.+...+....|..++..+.
T Consensus       105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            57889999999 4 99999999999993  89998763                  235566677777888888899998


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      ..++ .+.+..+++       ..|++|.+.-
T Consensus       183 ~~i~-~~n~~~~l~-------~~DlVvD~~D  205 (722)
T PRK07877        183 DGLT-EDNVDAFLD-------GLDVVVEECD  205 (722)
T ss_pred             ccCC-HHHHHHHhc-------CCCEEEECCC
Confidence            8886 566666554       3688887765

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.64  E-value=0.005  Score=44.15  Aligned_cols=48  Identities=25%  Similarity=0.255  Sum_probs=40.7

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK   65 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   65 (138)
                      .-.+++.-++.|.|++|.||.++|++|+.++....++.|+.+......
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~  208 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQR  208 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhh
Confidence            345778889999999999999999999999999999998776654443

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.61  E-value=0.018  Score=42.60  Aligned_cols=34  Identities=35%  Similarity=0.471  Sum_probs=29.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      .+++++|+|+ |++|...++.+...|++|++++|+
T Consensus       172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence            5789999986 899999998777789999999884

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.60  E-value=0.0086  Score=43.67  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=38.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .++.||.+.|.|.++-+|+.++..|+++|+.|.++.+......+
T Consensus       155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e  198 (301)
T PRK14194        155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKA  198 (301)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHH
Confidence            46899999999999999999999999999999999776554333

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=96.59  E-value=0.042  Score=40.30  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=30.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      .+.+++|+|+++++|.++++.....|++|+++.++
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~  196 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST  196 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc
Confidence            38899999999999999999888889998887764

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.56  E-value=0.0081  Score=39.88  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+++||+++|.|.+.-+|+.++..|.++|+.|.++......+++
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~   75 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE   75 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc
Confidence            46899999999999999999999999999999998776544444

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.54  E-value=0.015  Score=42.82  Aligned_cols=91  Identities=19%  Similarity=0.182  Sum_probs=57.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchh-HHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH-H
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG-RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD-F   97 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~   97 (138)
                      .++.||++.|.|- |.||+++|+.+..-|++|+..++..... ......+.+..+...+..+.+.++..  -..++.. .
T Consensus       143 ~~l~gktvgIiG~-G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~--T~~li~~~~  219 (314)
T PRK06932        143 TDVRGSTLGVFGK-GCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTET--TQNLINAET  219 (314)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChH--HhcccCHHH
Confidence            4689999999998 7999999999988999998887653211 00001122222246788888887743  2333322 2


Q ss_pred             HhcCCCccEEEECcccC
Q 042455           98 TARALPLNILINKAGIC  114 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~  114 (138)
                      .+.+ +.+.++.|.|..
T Consensus       220 l~~m-k~ga~lIN~aRG  235 (314)
T PRK06932        220 LALM-KPTAFLINTGRG  235 (314)
T ss_pred             HHhC-CCCeEEEECCCc
Confidence            2222 456777777753

>PLN02827 Alcohol dehydrogenase-like

Probab=96.53  E-value=0.036  Score=41.57  Aligned_cols=79  Identities=15%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCH-HHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL-ASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~  100 (138)
                      .+.+++|.|+ +++|...++.....|+. |+++++++++.+.+ .++     +...   ..|..+. +.....+.++.. 
T Consensus       193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~l-----Ga~~---~i~~~~~~~~~~~~v~~~~~-  261 (378)
T PLN02827        193 KGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTF-----GVTD---FINPNDLSEPIQQVIKRMTG-  261 (378)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc-----CCcE---EEcccccchHHHHHHHHHhC-
Confidence            5889999985 89999998887788984 77777776654432 222     3221   1233221 233333333322 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                       +.+|++|.++|.
T Consensus       262 -~g~d~vid~~G~  273 (378)
T PLN02827        262 -GGADYSFECVGD  273 (378)
T ss_pred             -CCCCEEEECCCC
Confidence             268888888884

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.52  E-value=0.038  Score=40.73  Aligned_cols=43  Identities=14%  Similarity=0.170  Sum_probs=35.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~   66 (138)
                      ..+++.|+|+ |.+|..++..++..| +.+++++.+++.++....
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~l   47 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKAL   47 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHH
Confidence            4568899997 899999999999888 689999999876554333

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.51  E-value=0.064  Score=39.51  Aligned_cols=76  Identities=12%  Similarity=0.132  Sum_probs=53.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC-CHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS-SLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~~  101 (138)
                      .|+++.|+|++| ||.--++.--+-|++|.++++...+-++..+.|     +...+   .|.+ |++.++++.+..   .
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L-----GAd~f---v~~~~d~d~~~~~~~~~---d  248 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL-----GADVF---VDSTEDPDIMKAIMKTT---D  248 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc-----Cccee---EEecCCHHHHHHHHHhh---c
Confidence            799999999987 887666655556999999999987777777766     44433   3555 777777776653   1


Q ss_pred             CCccEEEEC
Q 042455          102 LPLNILINK  110 (138)
Q Consensus       102 ~~id~lv~~  110 (138)
                      +.+|.++|-
T Consensus       249 g~~~~v~~~  257 (360)
T KOG0023|consen  249 GGIDTVSNL  257 (360)
T ss_pred             Ccceeeeec
Confidence            345655544

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.50  E-value=0.025  Score=42.50  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA   60 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~   60 (138)
                      .+.+++|.|+ +++|...++.....|++|++++++.++
T Consensus       178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~  214 (375)
T PLN02178        178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEK  214 (375)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            5789999886 899999998888889999888876554

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=96.50  E-value=0.024  Score=41.31  Aligned_cols=42  Identities=29%  Similarity=0.342  Sum_probs=31.7

Q ss_pred             CCCEEEE-eCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIV-TGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~li-tG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+..++| +|+++++|...++.....|++|+++++++++.+.+
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~  184 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLL  184 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            3444555 58999999999887777899999988887665443

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli

Probab=96.48  E-value=0.058  Score=36.14  Aligned_cols=74  Identities=9%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             HHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEEEECccc
Q 042455           38 AETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        38 ~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      ..+.+...+.+.++++++-+++.++++...++..+|+.++.....-.-+.++.+++++.+.+.  +.|+|+.+-|.
T Consensus        38 ~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~  111 (172)
T PF03808_consen   38 PDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGA  111 (172)
T ss_pred             HHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCC
Confidence            345555555678888888888888888888888888776665443322677777777777653  67888887775

Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.46  E-value=0.036  Score=41.37  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+++++|.|+ +++|...++.+...|+ +|+++++++++.+.+ .++     +...   ..|..+.+..+. +.+...  
T Consensus       191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~-----Ga~~---~i~~~~~~~~~~-i~~~~~--  257 (371)
T cd08281         191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL-----GATA---TVNAGDPNAVEQ-VRELTG--  257 (371)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc-----CCce---EeCCCchhHHHH-HHHHhC--
Confidence            4789999985 8999998887777898 688888877665433 222     3221   123333222222 222211  


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +.+|++|.++|.
T Consensus       258 ~g~d~vid~~G~  269 (371)
T cd08281         258 GGVDYAFEMAGS  269 (371)
T ss_pred             CCCCEEEECCCC
Confidence            268999988863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.46  E-value=0.064  Score=39.75  Aligned_cols=90  Identities=16%  Similarity=0.064  Sum_probs=55.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH-------HHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA-------IVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      .+.+|++.|+|. |.+|.++|+.|...|.+|++..+..++..+....       ..+.....++.++.+.   ......+
T Consensus        14 ~L~gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVP---d~~~~~V   89 (330)
T PRK05479         14 LIKGKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLP---DEVQAEV   89 (330)
T ss_pred             hhCCCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCC---HHHHHHH
Confidence            467899999987 5899999999999999998877764432222111       1111113344444443   2233566


Q ss_pred             H-HHHHhcCCCccEEEECcccC
Q 042455           94 A-SDFTARALPLNILINKAGIC  114 (138)
Q Consensus        94 ~-~~~~~~~~~id~lv~~ag~~  114 (138)
                      + +++.....+=.+|++++|+.
T Consensus        90 ~~~~I~~~Lk~g~iL~~a~G~~  111 (330)
T PRK05479         90 YEEEIEPNLKEGAALAFAHGFN  111 (330)
T ss_pred             HHHHHHhcCCCCCEEEECCCCC
Confidence            5 55554443335778888875

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=96.45  E-value=0.046  Score=40.45  Aligned_cols=39  Identities=28%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGR   62 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~   62 (138)
                      .+.+++|+| ++++|+++++.+...|+ +|+++++++++.+
T Consensus       177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~  216 (361)
T cd08231         177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLE  216 (361)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            678999997 58999999988888899 8998888766544

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.43  E-value=0.023  Score=42.12  Aligned_cols=40  Identities=25%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~   63 (138)
                      .+++++|.|+ +++|.+.++.....|++ |+++++++++.+.
T Consensus       176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~  216 (358)
T TIGR03451       176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEW  216 (358)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence            4789999985 89999998877788984 8888887766444

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=96.43  E-value=0.042  Score=40.05  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=33.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDV   64 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~   64 (138)
                      +.+++|.|+++++|.++++..... |++|+.+.+++++.+.+
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l  190 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWV  190 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHH
Confidence            789999999999999988766666 99999998877654443

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=96.42  E-value=0.026  Score=41.59  Aligned_cols=78  Identities=26%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+++++|.|+ +++|...++.+...|+ +|+++++++++.+.+ .++     +...   ..|..+.+..+.+ .+.. ..
T Consensus       172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~-----ga~~---~i~~~~~~~~~~l-~~~~-~~  239 (351)
T cd08233         172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELA-EEL-----GATI---VLDPTEVDVVAEV-RKLT-GG  239 (351)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCCE---EECCCccCHHHHH-HHHh-CC
Confidence            5789999985 7999999998888999 788888877665433 222     2221   1233332222222 2211 11


Q ss_pred             CCccEEEECcc
Q 042455          102 LPLNILINKAG  112 (138)
Q Consensus       102 ~~id~lv~~ag  112 (138)
                      ..+|+++.++|
T Consensus       240 ~~~d~vid~~g  250 (351)
T cd08233         240 GGVDVSFDCAG  250 (351)
T ss_pred             CCCCEEEECCC
Confidence            24899999887

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=96.41  E-value=0.022  Score=41.81  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=52.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCC-eeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAA-KVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++.|+|+ |++|.+++..|+.++.  .+++++.+++.++-...+|....+.. .-..+..| .+.+           .+.
T Consensus         2 KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~y~-----------~~~   68 (313)
T COG0039           2 KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GDYE-----------DLK   68 (313)
T ss_pred             eEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CChh-----------hhc
Confidence            5788999 9999999999988764  79999999777666666664332110 00111222 1111           223


Q ss_pred             CccEEEECcccCCCCC
Q 042455          103 PLNILINKAGICGTPF  118 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~  118 (138)
                      .-|++|..||+.+.+.
T Consensus        69 ~aDiVvitAG~prKpG   84 (313)
T COG0039          69 GADIVVITAGVPRKPG   84 (313)
T ss_pred             CCCEEEEeCCCCCCCC
Confidence            5799999999875433

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.40  E-value=0.049  Score=39.74  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=34.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l   68 (138)
                      +++.|+|+ |.+|..++..++..|. +|++++++++.++....++
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl   46 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDI   46 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHH
Confidence            46888998 8999999999998875 9999999888765544443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.39  E-value=0.014  Score=46.19  Aligned_cols=58  Identities=9%  Similarity=0.165  Sum_probs=41.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVR   91 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~   91 (138)
                      ..++|.|. |.+|+.+++.|.++|.++++++.|+++.++..+        .....+.+|.+|++.++
T Consensus       418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~  475 (558)
T PRK10669        418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQ  475 (558)
T ss_pred             CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHH
Confidence            34566665 799999999999999999999999877665432        12445666666655543

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=96.39  E-value=0.042  Score=42.19  Aligned_cols=80  Identities=21%  Similarity=0.288  Sum_probs=54.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC------EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           27 AIVTGASSGIGAETTRVLALRGV------HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~------~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      ++|+|+ ||||.++++.|+..|.      ++.+++.+.                   .+.+.+.+.+++..|..++..+.
T Consensus         2 VlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           2 VFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            678885 7999999999999987      788887631                   24455566677777788888888


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKA  111 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~a  111 (138)
                      ..+... . +.++..  +.+..+|++|++.
T Consensus        81 ~~v~~~-~-~~~~~~--~f~~~~DvVi~al  106 (435)
T cd01490          81 NRVGPE-T-EHIFND--EFWEKLDGVANAL  106 (435)
T ss_pred             cccChh-h-hhhhhH--HHhcCCCEEEECC
Confidence            777532 1 122221  1234678888774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PLN02306 hydroxypyruvate reductase

Probab=96.38  E-value=0.041  Score=41.63  Aligned_cols=105  Identities=15%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHH-HCCCEEEEEecCcchh-HH--------------------HHHHHHhcCCCCee
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLA-LRGVHVIMADRNMAAG-RD--------------------VKVAIVMQNPAAKV   77 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~-~~g~~v~~~~r~~~~~-~~--------------------~~~~l~~~~~~~~~   77 (138)
                      .++.||++.|.|. |.||+++|+.+. .-|++|+..++..... ..                    ....+.+......+
T Consensus       161 ~~L~gktvGIiG~-G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDi  239 (386)
T PLN02306        161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADV  239 (386)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCE
Confidence            4689999999988 699999999986 6799999988764321 10                    00122222224567


Q ss_pred             EEEEecCCCHHHHHHHHHH-HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhh
Q 042455           78 DVMELDLSSLASVRKFASD-FTARALPLNILINKAGICGTPFMLSKDNIELHFAT  131 (138)
Q Consensus        78 ~~~~~D~~~~~~~~~~~~~-~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~  131 (138)
                      ..+.+.+++.  -..++.. ..+.+ +.+.++.|.|...   -.+.+.+.+.++.
T Consensus       240 V~lh~Plt~~--T~~lin~~~l~~M-K~ga~lIN~aRG~---lVDe~AL~~AL~s  288 (386)
T PLN02306        240 ISLHPVLDKT--TYHLINKERLALM-KKEAVLVNASRGP---VIDEVALVEHLKA  288 (386)
T ss_pred             EEEeCCCChh--hhhhcCHHHHHhC-CCCeEEEECCCcc---ccCHHHHHHHHHh
Confidence            7777777642  3334432 22233 4566666666532   2344444444443

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=96.38  E-value=0.041  Score=41.46  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR   62 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~   62 (138)
                      .+.+++|.|+++++|.++++.+...|++++++.++.++.+
T Consensus       189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~  228 (398)
T TIGR01751       189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAE  228 (398)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence            4689999999999999999888888999888877665433

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.37  E-value=0.045  Score=40.16  Aligned_cols=36  Identities=39%  Similarity=0.550  Sum_probs=31.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .+.+++|.|+++++|.++++.....|+++++++++.
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~  212 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA  212 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch
Confidence            578999999999999999988888899988887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=96.36  E-value=0.065  Score=39.34  Aligned_cols=41  Identities=22%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+++++|.| ++++|+++++.+...|.+|+++.++.++.+.+
T Consensus       165 ~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~  205 (345)
T cd08260         165 PGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDKLELA  205 (345)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            478999999 68999999998888899999998887665443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.36  E-value=0.014  Score=34.84  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=32.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHCC---CEEEEE-ecCcchhHHHHHHH
Q 042455           27 AIVTGASSGIGAETTRVLALRG---VHVIMA-DRNMAAGRDVKVAI   68 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g---~~v~~~-~r~~~~~~~~~~~l   68 (138)
                      +.|. |+|.+|.++++.|++.|   .+|.++ .|++++.++...+.
T Consensus         2 I~iI-G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~   46 (96)
T PF03807_consen    2 IGII-GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY   46 (96)
T ss_dssp             EEEE-STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC
T ss_pred             EEEE-CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh
Confidence            3445 56899999999999999   789865 99988877766543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=96.35  E-value=0.044  Score=40.80  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=48.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCH-HHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL-ASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~  100 (138)
                      .+.+++|.|+ +++|...++.....|+ +|+++++++++.+.+ .++     +... +  .|..+. ..+...+.+... 
T Consensus       184 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~-----ga~~-~--i~~~~~~~~~~~~~~~~~~-  252 (365)
T cd08277         184 PGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEF-----GATD-F--INPKDSDKPVSEVIREMTG-  252 (365)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc-----CCCc-E--eccccccchHHHHHHHHhC-
Confidence            5789999975 8999999887778898 688888877665443 222     2211 1  122211 122233333322 


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                       +.+|++|.++|
T Consensus       253 -~g~d~vid~~g  263 (365)
T cd08277         253 -GGVDYSFECTG  263 (365)
T ss_pred             -CCCCEEEECCC
Confidence             46899998877

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=96.35  E-value=0.039  Score=39.89  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      +.+++|.|+++++|.++++.....|++|+++++++++.+.
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~  186 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADY  186 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            4589999999999999998777889999999888766443

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.35  E-value=0.049  Score=39.90  Aligned_cols=40  Identities=20%  Similarity=0.252  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+++++|.| ++++|.++++.+...|++|+++++++++.+.
T Consensus       163 ~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~  202 (333)
T cd08296         163 PGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADL  202 (333)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence            578999999 7999999998888889999999888666443

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.35  E-value=0.057  Score=39.90  Aligned_cols=106  Identities=10%  Similarity=0.062  Sum_probs=63.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHH-HCCCEEEEEecCcchhH--HH---HHHHHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLA-LRGVHVIMADRNMAAGR--DV---KVAIVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~-~~g~~v~~~~r~~~~~~--~~---~~~l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      .++.||++.|.|- |.||+++++.+. .-|++|+..++......  ..   ...+.+......+..+.+.++..  -+.+
T Consensus       141 ~~L~gktvGIiG~-G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~--T~~l  217 (323)
T PRK15409        141 TDVHHKTLGIVGM-GRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDE--THHL  217 (323)
T ss_pred             CCCCCCEEEEEcc-cHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChH--Hhhc
Confidence            4689999999998 799999999987 77999988877532211  10   01122222246788888887643  3334


Q ss_pred             HHH-HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhc
Q 042455           94 ASD-FTARALPLNILINKAGICGTPFMLSKDNIELHFATN  132 (138)
Q Consensus        94 ~~~-~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n  132 (138)
                      +.. ..+.+ +.+.++.|.|...   -.+++.+.+.++.+
T Consensus       218 i~~~~l~~m-k~ga~lIN~aRG~---vVde~AL~~AL~~g  253 (323)
T PRK15409        218 FGAEQFAKM-KSSAIFINAGRGP---VVDENALIAALQKG  253 (323)
T ss_pred             cCHHHHhcC-CCCeEEEECCCcc---ccCHHHHHHHHHcC
Confidence            422 23333 4577777777532   23445554444433

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.35  E-value=0.11  Score=38.14  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCC--C-CeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           27 AIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNP--A-AKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~--~-~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +.|.|+ |.+|..+|..|+..+.  ++++++.+++.++....+|....+  . ..+.....   +.+.       +    
T Consensus         2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~~-------~----   66 (307)
T cd05290           2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYDD-------C----   66 (307)
T ss_pred             EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHHH-------h----
Confidence            578898 8999999999998875  799999998888777777764321  1 12333322   3222       2    


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                      ..-|++|..||...
T Consensus        67 ~~aDivvitaG~~~   80 (307)
T cd05290          67 ADADIIVITAGPSI   80 (307)
T ss_pred             CCCCEEEECCCCCC
Confidence            35799999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=96.35  E-value=0.047  Score=39.82  Aligned_cols=41  Identities=29%  Similarity=0.441  Sum_probs=35.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+++.+|+++++.+...|++++.++++.++.+.
T Consensus       162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~  202 (334)
T PRK13771        162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKI  202 (334)
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            47799999999999999999888899999888887766544

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.34  E-value=0.091  Score=38.87  Aligned_cols=90  Identities=19%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH------HHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV------AIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~------~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .+.+|++.|+|- |.+|.++|+.|...|++|++..|.....+....      .+.+.....++..+.+.  +.+. ..++
T Consensus        13 ~LkgKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLP--d~~t-~~V~   88 (335)
T PRK13403         13 LLQGKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLP--DEQQ-AHVY   88 (335)
T ss_pred             hhCcCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCC--ChHH-HHHH
Confidence            478999999988 799999999999999999887665322211110      12222223455555554  2333 4555


Q ss_pred             -HHHHhcCCCccEEEECcccC
Q 042455           95 -SDFTARALPLNILINKAGIC  114 (138)
Q Consensus        95 -~~~~~~~~~id~lv~~ag~~  114 (138)
                       +++...+.+=.+|+..-|..
T Consensus        89 ~~eil~~MK~GaiL~f~hgfn  109 (335)
T PRK13403         89 KAEVEENLREGQMLLFSHGFN  109 (335)
T ss_pred             HHHHHhcCCCCCEEEECCCcc
Confidence             34666665667888888865

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=96.32  E-value=0.029  Score=40.82  Aligned_cols=41  Identities=12%  Similarity=0.142  Sum_probs=34.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+.+++|.|+++.+|.++++.....|++++.+.+++++.+.
T Consensus       140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~  180 (327)
T PRK10754        140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQR  180 (327)
T ss_pred             CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            57899999999999999988887889999888877665443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.32  E-value=0.18  Score=36.52  Aligned_cols=40  Identities=25%  Similarity=0.270  Sum_probs=33.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK   65 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   65 (138)
                      +++.|.|+ |.+|.++|..|+..|.+|.+++++++..+...
T Consensus         4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence            46778876 79999999999999999999999987655543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.32  E-value=0.021  Score=41.42  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .+++||.++|.|.+.-+|+.++..|.++|+.|.++....
T Consensus       153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t  191 (285)
T PRK14191        153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT  191 (285)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999999999999999999999998876543

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=96.30  E-value=0.013  Score=39.59  Aligned_cols=79  Identities=18%  Similarity=0.175  Sum_probs=56.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.|.++.++|.||+|-.|..+.+++++.+-  +|+++.|.+....+ .        ...+.....|++..++.   ..  
T Consensus        14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a-t--------~k~v~q~~vDf~Kl~~~---a~--   79 (238)
T KOG4039|consen   14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA-T--------DKVVAQVEVDFSKLSQL---AT--   79 (238)
T ss_pred             HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc-c--------cceeeeEEechHHHHHH---Hh--
Confidence            557788999999999999999999999873  79999887532111 1        34455566676544443   22  


Q ss_pred             HhcCCCccEEEECcccC
Q 042455           98 TARALPLNILINKAGIC  114 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~  114 (138)
                        ....+|+++.+-|-.
T Consensus        80 --~~qg~dV~FcaLgTT   94 (238)
T KOG4039|consen   80 --NEQGPDVLFCALGTT   94 (238)
T ss_pred             --hhcCCceEEEeeccc
Confidence              334789999998865

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=96.28  E-value=0.071  Score=40.11  Aligned_cols=74  Identities=18%  Similarity=0.208  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ..|+++|+|++ .+|..+++.+.+.|+++++++.++......   +     ..  ..+..|..|.+.+.+++++     .
T Consensus        11 ~~~~ilIiG~g-~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~---~-----ad--~~~~~~~~d~~~l~~~~~~-----~   74 (395)
T PRK09288         11 SATRVMLLGSG-ELGKEVAIEAQRLGVEVIAVDRYANAPAMQ---V-----AH--RSHVIDMLDGDALRAVIER-----E   74 (395)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCCCCchHH---h-----hh--heEECCCCCHHHHHHHHHH-----h
Confidence            56689999875 688999999889999999998876432211   1     01  1356677788777766654     2


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      ++|.++....
T Consensus        75 ~id~vi~~~e   84 (395)
T PRK09288         75 KPDYIVPEIE   84 (395)
T ss_pred             CCCEEEEeeC
Confidence            5788876543

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.27  E-value=0.0086  Score=44.18  Aligned_cols=77  Identities=16%  Similarity=0.041  Sum_probs=49.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-------EEEEEecCcch--hHHHHHHHHhcC-CC-CeeEEEEecCCCHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-------HVIMADRNMAA--GRDVKVAIVMQN-PA-AKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-------~v~~~~r~~~~--~~~~~~~l~~~~-~~-~~~~~~~~D~~~~~~~~~~   93 (138)
                      +++.|+|++|.+|..++..|+..|.       .+++++.++..  ++....++.... +- ..+.. .  -.+.      
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~--~~~~------   73 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI-T--DDPN------   73 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE-e--cCcH------
Confidence            4789999999999999999998774       69999995443  555555554321 10 11111 1  1111      


Q ss_pred             HHHHHhcCCCccEEEECcccCC
Q 042455           94 ASDFTARALPLNILINKAGICG  115 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~~  115 (138)
                           +.+..-|++|..||...
T Consensus        74 -----~~~~daDivvitaG~~~   90 (322)
T cd01338          74 -----VAFKDADWALLVGAKPR   90 (322)
T ss_pred             -----HHhCCCCEEEEeCCCCC
Confidence                 12245799999999864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
3rd5_A	291	Crystal Structure Of A Putative Uncharacterized Pro		3e-17
2gdz_A	267	Crystal Structure Of 15-Hydroxyprostaglandin Dehydr		3e-06
3rku_A	287	Substrate Fingerprint And The Structure Of Nadp+ De		9e-06
3lyl_A	247	Structure Of 3-Oxoacyl-Acylcarrier Protein Reductas		1e-05
3ioy_A	319	Structure Of Putative Short-Chain Dehydrogenase (Sa		5e-05
3sju_A	279	Hedamycin Polyketide Ketoreductase Bound To Nadph L		7e-05
3ndr_A	247	Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro		2e-04
3nug_A	247	Crystal Structure Of Wild Type Tetrameric Pyridoxal		2e-04
1k2w_A	256	Crystal Structure Of Sorbitol Dehydrogenase From R.		2e-04
3rkr_A	262	Crystal Structure Of A Metagenomic Short-Chain Oxid		2e-04
1ipe_A	259	Tropinone Reductase-Ii Complexed With Nadph Length		3e-04
2ae2_A	260	Tropinone Reductase-Ii Complexed With Nadp+ And Pse		3e-04
1hxh_A	253	Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID D		3e-04
3o26_A	311	The Structure Of Salutaridine Reductase From Papave		4e-04
2rhr_B	277	P94l Actinorhodin Ketordeuctase Mutant, With Nadph		4e-04
3csd_B	281	Actinorhodin Polyketide Ketoreductase Mutant P94l B		5e-04
4dbz_A	281	Crystal Structure Of V151l Actinorhodin Polyketide		5e-04
4dqx_A	277	Crystal Structure Of A Short Chain Dehydrogenase Fr		5e-04
1x7g_A	261	Actinorhodin Polyketide Ketoreductase, Act Kr, With		6e-04
1w4z_A	281	Structure Of Actinorhodin Polyketide (Actiii) Reduc		6e-04
2rh4_A	277	Actinorhodin Ketoreductase, Actkr, With Nadph And I		6e-04
4dc0_A	281	Crystal Structure Of F189w Actinorhodin Polyketide		6e-04
4dc1_A	281	Crystal Structure Of Y202f Actinorhodin Polyketide		6e-04
3o38_A	266	Crystal Structure Of A Short Chain Dehydrogenase Fr		7e-04

>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           T ++TGA+SG+GA T R LA RG  VIMA R+   G      +     A +V+V ELDL 
Sbjct: 18  TVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQ 72
Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
            L+SVR+FA   +      ++LIN AGI   P+ L+ D  E    TNHLG F
Sbjct: 73  DLSSVRRFADGVSG----ADVLINNAGIMAVPYALTVDGFESQIGTNHLGHF 120

>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase Type1, Complexed With Nad+ Length = 267

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%)
Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTGA+ GIG      L L+G  V + D N+ AG   K A+  Q    K   ++ D
Sbjct: 7   GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 66
Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           ++    +R            L+IL+N AG+
Sbjct: 67  VADQQQLRDTFRKVVDHFGRLDILVNNAGV 96

>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 23  AGVTAIVTGASSGIGAET--TRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           A  T ++TGAS+GIG  T    + A  G + +I+A R +    ++K  I  + P AKV V
Sbjct: 32  AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHV 91
Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAG 112
            +LD++    ++ F  +       ++IL+N AG
Sbjct: 92  AQLDITQAEKIKPFIENLPQEFKDIDILVNNAG 124

>pdb|3LYL|A Chain A, Structure Of 3-Oxoacyl-Acylcarrier Protein Reductase, Fabg From Francisella Tularensis Length = 247

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGAS GIG E    LA +G  V+    + A+    K     +    K   + L++S 
Sbjct: 8   ALVTGASRGIGFEVAHALASKGATVVGTATSQASAE--KFENSXKEKGFKARGLVLNISD 65
Query: 87  LASVRKFASDFTARALPLNILINKAGI 113
           + S++ F ++  A  L ++IL+N AGI
Sbjct: 66  IESIQNFFAEIKAENLAIDILVNNAGI 92

>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D AG TA VTG ++G+G    R L  +G  V +AD    +       +  +    +V  +
Sbjct: 5   DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGV 64
Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
           +LD++S    +  A +  AR  P++IL N AG+
Sbjct: 65  QLDVASREGFKMAADEVEARFGPVSILCNNAGV 97

>pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI-VMQNPAAKVDVMELDL 84
           TA VTG SSGIG    R LA RG+ V    R+    ++V  A+  ++     VD    D+
Sbjct: 26  TAFVTGVSSGIGLAVARTLAARGIAVYGCARDA---KNVSAAVDGLRAAGHDVDGSSCDV 82
Query: 85  SSLASVRKFASDFTARALPLNILINKAG 112
           +S   V    +    R  P+ IL+N AG
Sbjct: 83  TSTDEVHAAVAAAVERFGPIGILVNSAG 110

>pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG TA+VTGA+ GIG      LA  G  VI++D N    +    +I       K   +  
Sbjct: 5   AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAA 59
Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIEL-HF 129
           D+S   SV+   ++  A    ++IL+N A I   PF+ + D+++L H+
Sbjct: 60  DISDPGSVKALFAEIQALTGGIDILVNNASIV--PFV-AWDDVDLDHW 104

>pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG TA+VTGA+ GIG      LA  G  VI++D N    +    +I       K   +  
Sbjct: 5   AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAA 59
Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIEL-HF 129
           D+S   SV+   ++  A    ++IL+N A I   PF ++ D+++L H+
Sbjct: 60  DISDPGSVKALFAEIQALTGGIDILVNNASIV--PF-VAWDDVDLDHW 104

>pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G TA++TG++ GIG          G  V +AD N+ A R     I    PAA    + LD
Sbjct: 5   GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---GPAAC--AIALD 59
Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           ++  AS+ +  ++   R   ++IL+N A +    P + +++++ +  FA N  G  +
Sbjct: 60  VTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLF 116

>pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +G  A+VTGAS GIGA   R L   G  V++  R++   R V+  IV      + +    
Sbjct: 28  SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHAC 85
Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           DLS   ++  FA+   A     ++L+N AG+
Sbjct: 86  DLSHSDAIAAFATGVLAAHGRCDVLVNNAGV 116

>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G TA+VTG S GIG      LA  G  V    RN     D       ++   KV+    D
Sbjct: 8   GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ--WRSKGFKVEASVCD 65
Query: 84  LSSLASVRKF----ASDFTARALPLNILINKAGI 113
           LSS +  ++     A+ F  +   LNIL+N AGI
Sbjct: 66  LSSRSERQELMNTVANHFHGK---LNILVNNAGI 96

>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G TA+VTG S GIG      LA  G  V    RN     D       ++   KV+    D
Sbjct: 9   GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ--WRSKGFKVEASVCD 66
Query: 84  LSSLASVRKF----ASDFTARALPLNILINKAGI 113
           LSS +  ++     A+ F  +   LNIL+N AGI
Sbjct: 67  LSSRSERQELMNTVANHFHGK---LNILVNNAGI 97

>pdb|1HXH|A Chain A, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID Dehydrogenase Length = 253

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTG +SG+G E  ++L   G  V  +D N AAG+ +   +  ++   + DV    
Sbjct: 6   GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDV---- 61
Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
            SS A      +    R   LN+L+N AGI
Sbjct: 62  -SSEADWTLVMAAVQRRLGTLNVLVNNAGI 90

>pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTG + GIG E  + L+  G+ V++  R++  G +  V  +  +    V   +LD++ 
Sbjct: 15  AVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEA-VEKLKNSNHENVVFHQLDVTD 73
Query: 87  LASVRKFASDFTARAL-PLNILINKAGICG 115
             +     +DF       L+IL+N AG+ G
Sbjct: 74  PIATMSSLADFIKTHFGKLDILVNNAGVAG 103

>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGA+SGIG E  R L   G+ V +  R     R       ++    + D    D+ S
Sbjct: 25  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCDVRS 82
Query: 87  LASVRKFASDFTARALPLNILINKAGICG 115
           +  +    +    R  P+++L+N AG  G
Sbjct: 83  VPEIEALVAAVVERYGPVDVLVNNAGRLG 111

>pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGA+SGIG E  R L   G+ V +  R     R       ++    + D    D+ S
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCDVRS 86
Query: 87  LASVRKFASDFTARALPLNILINKAGICG 115
           +  +    +    R  P+++L+N AG  G
Sbjct: 87  VPEIEALVAAVVERYGPVDVLVNNAGRLG 115

>pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGA+SGIG E  R L   G+ V +  R     R       ++    + D    D+ S
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCDVRS 86
Query: 87  LASVRKFASDFTARALPLNILINKAG 112
           +  +    +    R  P+++L+N AG
Sbjct: 87  VPEIEALVAAVVERYGPVDVLVNNAG 112

>pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Rhizobium Etli Cfn 42 Length = 277

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 18  QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV 77
           Q  D      IVTG  SGIG  T  + A  G +V++AD N  A   V+VA  + + A  V
Sbjct: 21  QSXDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAA--VRVANEIGSKAFGV 78
Query: 78  DVMELDLSSLASVRKFASDFTARALPLNILINKAGICGT 116
            V   D+SS           TA+   +++L+N AG   T
Sbjct: 79  RV---DVSSAKDAESXVEKTTAKWGRVDVLVNNAGFGTT 114

>pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGA+SGIG E  R L   G+ V +  R     R       ++    + D    D+ S
Sbjct: 9   ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCDVRS 66
Query: 87  LASVRKFASDFTARALPLNILINKAG 112
           +  +    +    R  P+++L+N AG
Sbjct: 67  VPEIEALVAAVVERYGPVDVLVNNAG 92

>pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGA+SGIG E  R L   G+ V +  R     R       ++    + D    D+ S
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCDVRS 86
Query: 87  LASVRKFASDFTARALPLNILINKAG 112
           +  +    +    R  P+++L+N AG
Sbjct: 87  VPEIEALVAAVVERYGPVDVLVNNAG 112

>pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGA+SGIG E  R L   G+ V +  R     R       ++    + D    D+ S
Sbjct: 25  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCDVRS 82
Query: 87  LASVRKFASDFTARALPLNILINKAG 112
           +  +    +    R  P+++L+N AG
Sbjct: 83  VPEIEALVAAVVERYGPVDVLVNNAG 108

>pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGA+SGIG E  R L   G+ V +  R     R       ++    + D    D+ S
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCDVRS 86
Query: 87  LASVRKFASDFTARALPLNILINKAG 112
           +  +    +    R  P+++L+N AG
Sbjct: 87  VPEIEALVAAVVERYGPVDVLVNNAG 112

>pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           A+VTGA+SGIG E  R L   G+ V +  R     R       ++    + D    D+ S
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE--LREAGVEADGRTCDVRS 86
Query: 87  LASVRKFASDFTARALPLNILINKAG 112
           +  +    +    R  P+++L+N AG
Sbjct: 87  VPEIEALVAAVVERYGPVDVLVNNAG 112

>pdb|3O38|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 266

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 3   GPSEFSASSTAEEVT-QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD---RNM 58
           GP   + S   +E+   G+    V  +   A +GIG+ T R   L G  V+++D   R +
Sbjct: 1   GPGSMNLSEAPKEIDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRL 60
Query: 59  AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG-TP 117
              RD    + +     +V+ +  D++S  +V    +    +A  L++L+N AG+ G TP
Sbjct: 61  GETRDQLADLGL----GRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTP 116
Query: 118 FM 119
            +
Sbjct: 117 VV 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	3e-48
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	4e-35
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	2e-25
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	6e-18
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	1e-17
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	6e-17
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	1e-16
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	2e-16
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	1e-15
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	1e-15
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	1e-15
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	2e-15
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	4e-15
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	4e-15
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	4e-15
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	6e-15
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	1e-14
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	1e-14
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	1e-14
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	1e-14
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	1e-14
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	1e-14
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	2e-14
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	2e-14
3rih_A	293	Short chain dehydrogenase or reductase; structural	2e-14
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	3e-14
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	3e-14
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	4e-14
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	5e-14
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	5e-14
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	6e-14
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	6e-14
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	7e-14
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	7e-14
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	8e-14
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	8e-14
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	9e-14
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	1e-13
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	1e-13
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	1e-13
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-13
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	2e-13
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	2e-13
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	2e-13
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	3e-13
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	3e-13
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	3e-13
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	3e-13
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	3e-13
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	3e-13
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	3e-13
1xhl_A	297	Short-chain dehydrogenase/reductase family member	4e-13
1spx_A	278	Short-chain reductase family member (5L265); paral	4e-13
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	4e-13
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	4e-13
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	4e-13
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	5e-13
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	5e-13
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	6e-13
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	6e-13
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	6e-13
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	6e-13
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	7e-13
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	7e-13
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	7e-13
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	8e-13
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	8e-13
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	9e-13
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	9e-13
4dqx_A	277	Probable oxidoreductase protein; structural genomi	9e-13
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	1e-12
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	1e-12
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	1e-12
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	1e-12
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	1e-12
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	1e-12
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	1e-12
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	1e-12
1xkq_A	280	Short-chain reductase family member (5D234); parra	2e-12
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	2e-12
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	2e-12
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	2e-12
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	2e-12
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	2e-12
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	3e-12
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	3e-12
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	3e-12
3cxt_A	291	Dehydrogenase with different specificities; rossma	3e-12
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	3e-12
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	3e-12
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	3e-12
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	3e-12
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	3e-12
3imf_A	257	Short chain dehydrogenase; structural genomics, in	4e-12
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	4e-12
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	4e-12
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	4e-12
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	5e-12
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	5e-12
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	5e-12
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	6e-12
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	6e-12
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	7e-12
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	7e-12
1xq1_A	266	Putative tropinone reducatse; structural genomics,	8e-12
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	8e-12
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	9e-12
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	9e-12
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	1e-11
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	1e-11
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	1e-11
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	1e-11
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	2e-11
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	2e-11
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	2e-11
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	2e-11
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	2e-11
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	2e-11
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	2e-11
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	3e-11
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	4e-11
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	4e-11
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	4e-11
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	5e-11
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	6e-11
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	7e-11
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	9e-11
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	1e-10
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	1e-10
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	1e-10
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	1e-10
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	2e-10
4e4y_A	244	Short chain dehydrogenase family protein; structur	2e-10
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	2e-10
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	2e-10
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	2e-10
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	3e-10
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	3e-10
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	3e-10
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	4e-10
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	4e-10
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	4e-10
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	5e-10
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	6e-10
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	6e-10
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	7e-10
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	8e-10
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	1e-09
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	1e-09
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	2e-09
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	2e-09
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-09
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	2e-09
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	2e-09
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	2e-09
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	2e-09
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	3e-09
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	5e-09
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	7e-09
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	8e-09
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	8e-09
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	9e-09
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	9e-09
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	9e-09
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	1e-08
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	1e-08
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	2e-08
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	3e-08
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	3e-08
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	5e-08
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	6e-08
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	1e-07
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	5e-07
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	5e-07
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	8e-07
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	1e-06
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	2e-06
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	3e-06
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	3e-06
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	8e-06
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	2e-05
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	5e-05
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	6e-05
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	2e-04
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	3e-04
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	7e-04
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	8e-04

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score =  155 bits (394), Expect = 3e-48
 Identities = 50/117 (42%), Positives = 65/117 (55%), Gaps = 9/117 (7%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
             A  T ++TGA+SG+GA T R LA RG  VIMA R+   G      +     A +V+V 
Sbjct: 13  SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVR 67

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
           ELDL  L+SVR+FA   +      ++LIN AGI   P+ L+ D  E    TNHLG F
Sbjct: 68  ELDLQDLSSVRRFADGVSG----ADVLINNAGIMAVPYALTVDGFESQIGTNHLGHF 120

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276

 Score =  121 bits (305), Expect = 4e-35
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 22  AAGVTAIVTGASSGIGAETTRVLA-LRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           +    A+VTG + GIG    R L  L    V++  R++  G+     +  +         
Sbjct: 2   SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFH 59

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSK--DNIELHFATNHLGAFY 138
           +LD+  L S+R            L++L+N AGI       +      E+   TN  G   
Sbjct: 60  QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD 119

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311

 Score = 97.3 bits (242), Expect = 2e-25
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTG + GIG E  + L+  G+ V++  R++  G +  V  +  +    V   +LD++
Sbjct: 14  CAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEA-VEKLKNSNHENVVFHQLDVT 72

Query: 86  S-LASVRKFASDFTARALPLNILINKAGICGTPF 118
             +A++   A         L+IL+N AG+ G   
Sbjct: 73  DPIATMSSLADFIKTHFGKLDILVNNAGVAGFSV 106

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score = 76.1 bits (188), Expect = 6e-18
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
              G   ++TGA  GIG  T    A     +++ D N     +       +   AKV   
Sbjct: 28  SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGLGAKVHTF 85

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI-CGTPFM-LSKDNIELHFATNHLGAFY 138
            +D S+   +   A    A    ++IL+N AG+   +         IE  F  N L  F+
Sbjct: 86  VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFW 145

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265

 Score = 75.3 bits (186), Expect = 1e-17
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
            D +   A+VTG SSGIG  T  +L   G  V    R+    R  + A+  + P A++  
Sbjct: 4   YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFA 63

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAF 137
              D+     VR FA          +IL+N AG    + F   + +              
Sbjct: 64  SVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVI 123

Query: 138 Y 138
           +
Sbjct: 124 H 124

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score = 74.4 bits (183), Expect = 6e-17
 Identities = 28/91 (30%), Positives = 46/91 (50%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG TA VTG ++G+G    R L  +G  V +AD    +       +  +    +V  ++L
Sbjct: 7   AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQL 66

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D++S    +  A +  AR  P++IL N AG+
Sbjct: 67  DVASREGFKMAADEVEARFGPVSILCNNAGV 97

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score = 72.4 bits (178), Expect = 1e-16
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 12/119 (10%)

Query: 26  TAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           + +VTGA+ GIG    + L       H+I   R++    ++K         ++V V+ L 
Sbjct: 5   SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK-----SIKDSRVHVLPLT 59

Query: 84  LSSLASVRKFASDFTARA--LPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF 137
           ++   S+  F S          L++LIN AG+    GT    ++  I      N     
Sbjct: 60  VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV 118

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250

 Score = 72.2 bits (178), Expect = 2e-16
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 2/115 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDL 84
            AI+TGAS GIGA     LA  G  V++  R+      V   I+  N    +  V+ LD+
Sbjct: 9   LAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDI 68

Query: 85  SSLASVRKFASDFTARALPLNILINKAGIC-GTPFMLSKDNIELHFATNHLGAFY 138
           +          D   +   ++IL+N A +          DN       N +  + 
Sbjct: 69  TDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYG 123

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G   IVTGAS GIG E    LA  G HV++  R+    + V     ++  AA    +  
Sbjct: 27  QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHC-LELGAASAHYIAG 85

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELH---FATNHLGAFY 138
            +  +    +F +        L++LI       T   L  D+I         N L    
Sbjct: 86  TMEDMTFAEQFVAQAGKLMGGLDMLILNHIT-NTSLNLFHDDIHHVRKSMEVNFLSYVV 143

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 26  TAIVTGASSGIGAETTRVLAL---RGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           + ++TG + G+G    + L        H+    RN    ++++  +   +    + ++E+
Sbjct: 23  SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKNHS--NIHILEI 79

Query: 83  DLSSLASVRKFASDFTARA--LPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF 137
           DL +  +  K  +D         LN+L N AGI         +    +     TN +   
Sbjct: 80  DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score = 69.9 bits (172), Expect = 1e-15
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 3   GPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR 62
           GP   S ++T +     +   G  A++TGA+ GIGA+  R  A  G  ++++ R+++   
Sbjct: 1   GPG--SMTTTDDRYAGVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELD 58

Query: 63  DVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-L 120
             + A+  Q     V  + +DL+   +  + A         L++L+N AGI    P +  
Sbjct: 59  AARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDT 117

Query: 121 SKDNIELHFATNHLGAFY 138
                +   A N      
Sbjct: 118 DPQLFDATIAVNLRAPAL 135

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 21/91 (23%), Positives = 38/91 (41%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
              TA++TG++SGIG    R LA  G ++++               V    +  V     
Sbjct: 24  MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPA 83

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D++  + +    +    R    +IL+N AG+
Sbjct: 84  DMTKPSEIADMMAMVADRFGGADILVNNAGV 114

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score = 68.4 bits (168), Expect = 4e-15
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +    IVTGA SG+G   T  L  RG  V M  R     +  ++ +        V  +  
Sbjct: 2   SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIVA 56

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           DL+    V    +          ++++ AG     P    + + I     +N +    
Sbjct: 57  DLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTIL 114

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235

 Score = 68.3 bits (168), Expect = 4e-15
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A++TGAS GIG    R LA  G  + +  R++     +   ++ Q    +V    LD+S
Sbjct: 4   VAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELM-QEQGVEVFYHHLDVS 62

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
              SV +F+     R   +++++  AG+
Sbjct: 63  KAESVEEFSKKVLERFGDVDVVVANAGL 90

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259

 Score = 68.5 bits (168), Expect = 4e-15
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 23  AGVTAIVTGASSGIGAETTRVLA---LRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
                ++TGAS G G      LA     G  ++++ R+ +  R +K  +  Q P  KV +
Sbjct: 5   GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64

Query: 80  MELDLSSLASVRKFASD----FTARALPLNILINKAGICGTPFM-----LSKDNIELHFA 130
              DL + A V++  S          L   +LIN A   G              +  ++A
Sbjct: 65  AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124

Query: 131 TNHLGAFY 138
            N      
Sbjct: 125 LNLTSMLC 132

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263

 Score = 68.3 bits (168), Expect = 6e-15
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +G  A++TG+SSGIG       A  G H+++  R +    +   ++  +    +V  + +
Sbjct: 6   SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLK-EKFGVRVLEVAV 64

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           D+++   V        +     +IL+N AG       M  + +  + ++    + A  
Sbjct: 65  DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVR 122

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 28/88 (31%), Positives = 42/88 (47%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGA+ GIG      L L+G  V + D N+ AG   K A+  Q    K   ++ D++
Sbjct: 9   VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 68

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
               +R            L+IL+N AG+
Sbjct: 69  DQQQLRDTFRKVVDHFGRLDILVNNAGV 96

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 24/88 (27%), Positives = 39/88 (44%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGAS GIGA   R L  +G+ V+   R +    ++            +     DLS
Sbjct: 34  LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 93

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
           +   +    S   ++   ++I IN AG+
Sbjct: 94  NEEDILSMFSAIRSQHSGVDICINNAGL 121

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 5/115 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           T  V GA   IGAE  +  A  G  V    RN      +   I  +    ++    LD  
Sbjct: 9   TVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEI--EAAGGRIVARSLDAR 66

Query: 86  SLASVRKFASDFTARALPLNILINKAGI-CGTPFM-LSKDNIELHFATNHLGAFY 138
           +   V  F  +      PL + I   G     P +  +       +       F 
Sbjct: 67  NEDEVTAFL-NAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFV 120

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TGAS GIG    R L + G  +++  R  A    +   I  ++         LD++
Sbjct: 6   VILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI--RDAGGTALAQVLDVT 63

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPFM--LSKDNIELHFATNHLGAFY 138
              SV  FA         +++L+N AG+     +  +  D  E     N  G  +
Sbjct: 64  DRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLW 118

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 28/91 (30%), Positives = 43/91 (47%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTG++SGIG      LA +G  +++     AA  +   A +      KV     
Sbjct: 3   KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           DLS   +VR    +   +   ++IL+N AGI
Sbjct: 63  DLSKGEAVRGLVDNAVRQMGRIDILVNNAGI 93

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 8   SASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA 67
            +S      +         A+VTGA+SGIG E  R L   G+ V +  R     R     
Sbjct: 6   HSSGLVPRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE 65

Query: 68  IVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
           +  +    + D    D+ S+  +    +    R  P+++L+N AG 
Sbjct: 66  L--REAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGR 109

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VT  SSG+G  +   LA  G  +++  RN          I      A+VD++  
Sbjct: 6   QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAG 65

Query: 83  DLSSLASVRKFASDFTARAL-PLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAFY 138
           D+     + +      AR L   +IL+   G    G    L  ++ +  +      A +
Sbjct: 66  DIREPGDIDRLFE--KARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVW 122

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
                  S+    ++       +G  A+VTGAS GIGA   R L   G  V++  R++  
Sbjct: 6   HHHHHHHSSGHIDDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEK 65

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
            R V+  I       + +    DLS   ++  FA+   A     ++L+N AG+
Sbjct: 66  LRAVEREI--VAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGV 116

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 2   KGPSEFSASSTAEEVTQGI--DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA 59
           +GP       +AE   + +  D +  + +VTG + GIG     V A  G +V +A R+  
Sbjct: 17  QGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR 76

Query: 60  AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
               V   +  +  A  V  + LD+S   S    A         L+++   AGI
Sbjct: 77  ELSSVTAELG-ELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGI 129

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 4/118 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTG +SGIG  T    A RG  ++++D +  A       +  Q        +  
Sbjct: 30  DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVC 87

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           D+  L  + + A +       ++++ + AGI   G    ++ D+       +  G+ +
Sbjct: 88  DVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIH 145

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257

 Score = 66.1 bits (162), Expect = 3e-14
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
               IVTGASSG+GA  TR+LA  G  V+  D    AG +    +         DV    
Sbjct: 7   SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADV---- 62

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKD 123
            ++ A      +        ++ L+N AG      +L + 
Sbjct: 63  -TNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRS 101

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267

 Score = 66.0 bits (162), Expect = 4e-14
 Identities = 26/93 (27%), Positives = 40/93 (43%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
                ++TG  SG+G  T   LA  G  + + D +       K A++   P A+V     
Sbjct: 12  TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 71

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG 115
           D+S  A V  + +  T R   ++   N AGI G
Sbjct: 72  DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEG 104

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279

 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
              TA VTG SSGIG    R LA RG+ V    R+          +  +     VD    
Sbjct: 23  RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGL--RAAGHDVDGSSC 80

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D++S   V    +    R  P+ IL+N AG 
Sbjct: 81  DVTSTDEVHAAVAAAVERFGPIGILVNSAGR 111

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256

 Score = 65.2 bits (160), Expect = 5e-14
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
              AIVTGA++GIG       A  G  V++ D        V  AI  +    K   +E +
Sbjct: 12  DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI--RQAGGKAIGLECN 69

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICG-TPFMLSKDNIELHFATNHLGAFY 138
           ++              +   + +L+N AG  G  PF +   + E  F  N    F 
Sbjct: 70  VTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFR 125

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247

 Score = 65.2 bits (160), Expect = 6e-14
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A++TGASSGIG  T R LA  G  V +A R +   R +   +      AKV V+ELD++
Sbjct: 9   VALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDEL--TAAGAKVHVLELDVA 66

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
               V    +        L+IL+N AGI
Sbjct: 67  DRQGVDAAVASTVEALGGLDILVNNAGI 94

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267

 Score = 65.3 bits (160), Expect = 6e-14
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           +   G TA+VTG+++GIG      L   G +V++  R      +    I  Q P A +  
Sbjct: 6   MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQP 65

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAF 137
           +  DL +    +     +      ++ILIN  GI     +  +  ++    F  N +   
Sbjct: 66  VVADLGTEQGCQDVIEKYPK----VDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGV 121

Query: 138 Y 138
            
Sbjct: 122 R 122

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244

 Score = 65.2 bits (160), Expect = 7e-14
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +G+ A+VTGA  GIG +T + L   G  V+   R  +    +            ++ + +
Sbjct: 6   SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCV 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           DL    +  K          P+++L+N A +    PF+ ++K+  +  F+ N    F 
Sbjct: 60  DLGDWDATEKALGGIG----PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQ 113

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234

 Score = 64.9 bits (159), Expect = 7e-14
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TGAS GIG  T R+L  +G  V +  R+    + +   +           +  D+ 
Sbjct: 7   AVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVR 60

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
                 +  +        L+ L+N AG+
Sbjct: 61  EEGDWARAVAAMEEAFGELSALVNNAGV 88

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272

 Score = 65.3 bits (160), Expect = 8e-14
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
              T  +TGA+SG G    R  A  G  +++  R     + +   +   +   +V  + L
Sbjct: 20  MSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL---SAKTRVLPLTL 76

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D+   A++     +       L  LIN AG+
Sbjct: 77  DVRDRAAMSAAVDNLPEEFATLRGLINNAGL 107

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255

 Score = 64.8 bits (159), Expect = 8e-14
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA+VTG++ G+G      LA  G  VI+ D       +    +           +  
Sbjct: 8   TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL--TRKGYDAHGVAF 65

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D++   ++    S   A  + ++ILIN AGI
Sbjct: 66  DVTDELAIEAAFSKLDAEGIHVDILINNAGI 96

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255

 Score = 64.8 bits (159), Expect = 9e-14
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            AI+TGA +GIG E     A  G  V+++D N  A   V   I  Q    +      D++
Sbjct: 13  CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI--QQLGGQAFACRCDIT 70

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG-TPFMLSKDNIELHFATNHLGAFY 138
           S   +   A    ++   ++IL+N AG  G  PF +   +    +  N    F+
Sbjct: 71  SEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFH 124

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 26  TAIVTGASSGIGAETTRVLALRG---VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           T ++TGAS+GIG  T           + +I+A R +    ++K  I  + P AKV V +L
Sbjct: 35  TVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQL 94

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D++    ++ F  +       ++IL+N AG 
Sbjct: 95  DITQAEKIKPFIENLPQEFKDIDILVNNAGK 125

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGA  GIG      L   G  V +AD N A  + V   I           +++D+S
Sbjct: 4   VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI--NQAGGHAVAVKVDVS 61

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
               V              ++++N AG+   TP   ++ + ++  +  N  G  +
Sbjct: 62  DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIW 116

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244

 Score = 64.0 bits (157), Expect = 1e-13
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG   +VTGA  GIG  T + L   G  V+   R  A    +            ++ + +
Sbjct: 6   AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCV 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           DL    +  +          P+++L+N A +    PF+ ++K+  +  F  N      
Sbjct: 60  DLGDWEATERALGSVG----PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQ 113

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTG  +G+G    + L+  G  V++  R           I        V  +  
Sbjct: 32  EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIG-GRTGNIVRAVVC 90

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAFY 138
           D+     V    +   A    L++L+N AG      P   ++ +      A N  GAF 
Sbjct: 91  DVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFL 149

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G + +VTG + GIG     V A  G +V +A R+ A        +  Q  + KV  ++ D
Sbjct: 10  GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLD-QLGSGKVIGVQTD 68

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           +S  A     A         ++++   AG+
Sbjct: 69  VSDRAQCDALAGRAVEEFGGIDVVCANAGV 98

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
             AG  A+VTG S GIG    + L   G  V +  R+  A  D    +   +       +
Sbjct: 26  SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRL---SAYGDCQAI 82

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM 119
             DLSS A  R+ A      +  L+IL+N AG   G    
Sbjct: 83  PADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALE 122

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  AIV G + G+G  T R L   G  V++  RN +    ++          +V  +  
Sbjct: 7   QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRS 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           D++ L  +    +        +++L   AG+    PF  +S+ + +  FA N  GAF+
Sbjct: 62  DIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFF 119

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230

 Score = 63.0 bits (154), Expect = 3e-13
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TGASSG+GAE  ++    G    +  R+ +    V   +     +  V     DL+
Sbjct: 3   LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLA 57

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
           S   V +      +     + +++ AG 
Sbjct: 58  SHQEVEQLFEQLDSI---PSTVVHSAGS 82

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G+ A++TG +SG+G  T   L  +G   ++ D   + G      +      A  DV    
Sbjct: 12  GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADV---- 67

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
            +S   V+   +    +   +++ +N AGI
Sbjct: 68  -TSEKDVQTALALAKGKFGRVDVAVNCAGI 96

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDL 84
             +VTGAS GIG E     A  G  VI+  RN    R V   I  +     +  +++L  
Sbjct: 14  IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLT 73

Query: 85  SSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIEL---HFATNHLGAFY 138
            +  + ++ A         L+ +++ AG+ G    +S+ N ++       N    F 
Sbjct: 74  CTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFM 130

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  AI+TG + GIG          G  V++  R+   G     ++       ++   + 
Sbjct: 5   DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV---GTPDQIQFFQH 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           D S      K          P++ L+N AGI    +    +        A N  G F+
Sbjct: 62  DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFF 119

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 12  TAEEVTQG-------IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV 64
           T E  TQG           G +AIV+G + G+G  T R L   G+ V++AD     G+ +
Sbjct: 11  TLEAQTQGPGSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKAL 70

Query: 65  KVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDN 124
              +  +      +V     +S  SV                ++   G      ++ +D 
Sbjct: 71  ADELGNRAEFVSTNV-----TSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDG 125

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G +A++TG++ GIG          G  V +AD ++   R     I           +++
Sbjct: 7   EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQM 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           D++   S+    +     A  L+IL+N A +    P + +++++ E  FA N  G  +
Sbjct: 62  DVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLF 119

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVME 81
            G   +VTGA+ GIGA   R  A  G  V++  R  A+  +V   I     P   +  + 
Sbjct: 13  KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALN 72

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICG--TPFM 119
           L+ ++    R+ A+        L+ L++ A I G  TP  
Sbjct: 73  LENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLE 112

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVME 81
           +G + I+TG+S+GIG     + A  G  V +  RN     + K  I+    PA K++ + 
Sbjct: 25  SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML----SKDNIELHFATNHLGAF 137
            D++  +      +   A+   ++IL+N AG              +  +  F  N     
Sbjct: 85  ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 144

Query: 138 Y 138
            
Sbjct: 145 E 145

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV-MQNPAAKVDVMELDL 84
            AI+TG+S+GIG  T  + A  G  V +  R+     + +  I+        V+ +  D+
Sbjct: 8   VAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 67

Query: 85  SSLASVRKFASDFTARALPLNILINKAGIC------GTPFMLSKDNIELHFATNHLGAFY 138
           ++ A   +  S    +   L+IL+N AG         T    S ++ +     N      
Sbjct: 68  TTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIA 127

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250

 Score = 62.9 bits (154), Expect = 4e-13
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            AIVTGASSG G         RG  V   D +     +          A KV  +  D++
Sbjct: 4   VAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEET-ARTHWHAYADKVLRVRADVA 62

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG 115
               V    +    +   +++L+N AGI G
Sbjct: 63  DEGDVNAAIAATMEQFGAIDVLVNNAGITG 92

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260

 Score = 62.9 bits (154), Expect = 4e-13
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+V+G + G+GA   R +   G  V+  D     G+ +   +     A     + L
Sbjct: 6   TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHL 60

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFM--LSKDNIELHFATNHLGAFY 138
           D++  A  +            L++L+N AGI     +   +    +     N  G F 
Sbjct: 61  DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFL 118

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253

 Score = 62.9 bits (154), Expect = 4e-13
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             IVTG+  GIG      LA  G  V++AD N  A   V   I           + +D+S
Sbjct: 11  VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI--VADGGTAISVAVDVS 68

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG----TPFM-LSKDNIELHFATNHLGAFY 138
              S +  A    A    ++ L+N A I G       + +  +  +   + N  GA +
Sbjct: 69  DPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALW 126

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281

 Score = 63.0 bits (154), Expect = 5e-13
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV-MQNPAAKVDVME 81
              T +VTG  SGIG      L   G  V++  RN          +  +      +    
Sbjct: 10  QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEP 69

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICGT--PFM-LSKDNIELHFATNHLGAFY 138
            D+++     +     TA    L+ +++ AG      P   +  +        N  G  Y
Sbjct: 70  TDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMY 129

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261

 Score = 62.9 bits (154), Expect = 5e-13
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A++TGA SG G    +  A  G  V++ DR+ A    V   I     A   D+   
Sbjct: 8   EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADI--- 64

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTP---FMLSKDNIELHFATNHLGAFY 138
             S  A V        ++   ++IL+N AGI   P    ++  +  +     N  G + 
Sbjct: 65  --SKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYL 121

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254

 Score = 62.5 bits (153), Expect = 6e-13
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +G T I+TG + G+GAE  R     G  V++AD     G      +             L
Sbjct: 4   SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHL 58

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFM--LSKDNIELHFATNHLGAFY 138
           D++     ++  +        ++ L+N AGI    F+   S +        N  G F 
Sbjct: 59  DVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFI 116

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255

 Score = 62.6 bits (153), Expect = 6e-13
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA+VTG++SGIG    +VLA  G ++++      A         +     K      
Sbjct: 3   KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPA----PALAEIARHGVKAVHHPA 58

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           DLS +A +    +        ++IL+N AGI
Sbjct: 59  DLSDVAQIEALFALAEREFGGVDILVNNAGI 89

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260

 Score = 62.5 bits (153), Expect = 6e-13
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
              AIVTG +  IG      LA  G  VI+AD + A        + M+     V  + +D
Sbjct: 13  NRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMD 70

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGIC 114
           +++  SV+        +   ++IL+  AGIC
Sbjct: 71  VTNTESVQNAVRSVHEQEGRVDILVACAGIC 101

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246

 Score = 62.5 bits (153), Expect = 6e-13
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G   I+T A+ GIG       A  G  VI  D N +  ++++           +    L
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYP-------GIQTRVL 57

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           D++    + +FA++       L++L N AG    GT     + + +     N    + 
Sbjct: 58  DVTKKKQIDQFANEVE----RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYL 111

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270

 Score = 62.6 bits (153), Expect = 7e-13
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG   +VTG   GIGA   R     G  V++ D++ + GR ++  +           +  
Sbjct: 8   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILC 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFML---SKDNIELHFATNHLGAFY 138
           D++    V+   S+   R   L+ ++N AG    P      S          N LG + 
Sbjct: 62  DVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYT 120

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276

 Score = 62.6 bits (153), Expect = 7e-13
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 4/117 (3%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A++TGAS+GIG +     A  G  V +A R+  A + V   I       K   +  D
Sbjct: 32  GKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCD 89

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           ++    VR      T     ++I +  AGI      + +  +  +    TN  G F 
Sbjct: 90  VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFL 146

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254

 Score = 62.1 bits (152), Expect = 7e-13
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             IVTGA SGIG    +  AL    V+  +        +   +       +V  ++ D+S
Sbjct: 9   VVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVS 66

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAFY 138
               V +F          +++L N AGI    TP   +S +  E   A N   AFY
Sbjct: 67  KKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFY 122

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263

 Score = 62.2 bits (152), Expect = 8e-13
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +G T +VTGA+SGIG     + A  G  ++  DR      +   A+      A+   +  
Sbjct: 5   SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVA 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D+S   +V    ++       L+ + + AG+
Sbjct: 60  DVSDPKAVEAVFAEALEEFGRLHGVAHFAGV 90

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score = 62.2 bits (152), Expect = 8e-13
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
                +++G    +G    R  A +G  +++A R +    DV   +   +   +   +  
Sbjct: 10  TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQV--TDTGRRALSVGT 67

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAFY 138
           D++  A V     +       ++++IN A       PF   + +++         GA  
Sbjct: 68  DITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALR 126

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +G  AIVTG S GIGA   R L   G  V +AD ++ A + V   +           +E+
Sbjct: 11  SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAVEV 65

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           D++  ASV              ++L   AG+    P + ++ +  + +F  N  G F 
Sbjct: 66  DVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFL 123

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TGASSGIG    R  +  G  +++  R +   + +                ++D++
Sbjct: 18  LVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN--------LPNTLCAQVDVT 69

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
              +     +       P + ++N AG+
Sbjct: 70  DKYTFDTAITRAEKIYGPADAIVNNAGM 97

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             IVTG  SGIG  T  + A  G +V++AD N  A   V   I  +    +VDV     S
Sbjct: 29  VCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDV-----S 83

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
           S           TA+   +++L+N AG 
Sbjct: 84  SAKDAESMVEKTTAKWGRVDVLVNNAGF 111

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247

 Score = 61.7 bits (151), Expect = 1e-12
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           +      A+VTGAS GIG E    LA +G  V+    + A+    + ++  +    K   
Sbjct: 1   MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSM--KEKGFKARG 58

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
           + L++S + S++ F ++  A  L ++IL+N AGI
Sbjct: 59  LVLNISDIESIQNFFAEIKAENLAIDILVNNAGI 92

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA---KVDV 79
            G  AIVTG ++GIG    + L   G +V++A R +   +     +    P     +V  
Sbjct: 17  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 76

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAF 137
           ++ ++ +   V             +N L+N  G    +P   +S         TN  G F
Sbjct: 77  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 136

Query: 138 Y 138
           Y
Sbjct: 137 Y 137

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            +VTGA++G G   TR    +G  VI   R     +++K  +        + + +LD+ +
Sbjct: 3   VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRN 57

Query: 87  LASVRKFASDFTARALPLNILINKAGI 113
            A++ +  +   A    ++IL+N AG+
Sbjct: 58  RAAIEEMLASLPAEWCNIDILVNNAGL 84

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               A++TGA+SGIG    +     G  V +  R           I           ++ 
Sbjct: 28  NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQA 82

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           D ++LA + +      A A  +++L   AG     P   ++++  +  F  N  G  +
Sbjct: 83  DSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLF 140

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA+VTG S GIG      LA  G  V    RN     +       +     V+    
Sbjct: 20  KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW--REKGLNVEGSVC 77

Query: 83  DLSSLASVRKFASDFTARAL-PLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           DL S     K            LNIL+N AG+         ++ +  +   TN   A++
Sbjct: 78  DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYH 136

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            AIVTG SSGIG      L   G  V+    +  +  +V           K+DV     +
Sbjct: 16  VAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF-------KIDV-----T 63

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           +   V++     T +   ++IL+N AGI   +P      +        N  G++ 
Sbjct: 64  NEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYL 118

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A++TGA SGIG  T   LA  GV V    R      +V   IV      +   +E D+S
Sbjct: 30  VALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVS 87

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAFY 138
               +R    D   +   L+I++  AGI G   P   L     +   A N  G F 
Sbjct: 88  DELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFL 143

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI-----VMQNPAAKV 77
               A+VTGA SGIG   +  LA  G  V   D + AA ++    +         P    
Sbjct: 6   RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNH 65

Query: 78  DVMELDLSSLASVRKFASDFTARA-LPLNILINKAGI 113
              + D+S   + R       A    P +++++ AGI
Sbjct: 66  AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI 102

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV-MQNPAAKVDVMELDL 84
           T I+TG+S+GIG  T  + A  G +V +  R+     + +  I+       +V+ +  D+
Sbjct: 8   TVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 67

Query: 85  SSLASVRKFASDFTARALPLNILINKAGICG-TPFMLSKDNIELH-----FATNHLGAFY 138
           ++     +  +    +   +++L+N AG      F  +  +  +         N      
Sbjct: 68  TTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 127

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 8/139 (5%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
                  S+          +  +    ++TGAS  +G      L   G  VI++ R   A
Sbjct: 4   SHHHHHHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHA 63

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM 119
                  +      A    +  D S    +  F      +   L  +++ A         
Sbjct: 64  SVT---ELR----QAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPG 116

Query: 120 LSKDNIELHFATNHLGAFY 138
              DN    F+ + L  + 
Sbjct: 117 EEADNFTRMFSVHMLAPYL 135

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 17/132 (12%)

Query: 10  SSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV 69
              +  +           +V G S  +GAE  +    +  + I  D       D      
Sbjct: 8   HHHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSF--- 64

Query: 70  MQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFM-LSKDNIE 126
                       +  S    ++       ++++ ++  +  AG    G         +++
Sbjct: 65  -----------TIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVK 113

Query: 127 LHFATNHLGAFY 138
                N   AF 
Sbjct: 114 GMIDMNLYSAFA 125

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 8/121 (6%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
                 AIVTGA SG+G      LA  G  V +A R + A ++    I           +
Sbjct: 25  KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCV 79

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML---SKDNIELHFATNHLGAF 137
             D++   SVR   +    +   +++L N AG       +   +    +    TN  G F
Sbjct: 80  PTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF 139

Query: 138 Y 138
            
Sbjct: 140 L 140

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A +TG  +G+G   T +L+  G   ++A R M   +     I  Q    KV  ++ 
Sbjct: 25  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQC 83

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D+     V+   S+    A   NI+IN A  
Sbjct: 84  DVRDPDMVQNTVSELIKVAGHPNIVINNAAG 114

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 5/116 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             +VTGA   IG  T   LA  G  + + D N  A    + ++  +    +      D++
Sbjct: 9   VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV--REKGVEARSYVCDVT 66

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAFY 138
           S  +V             ++ L N AG  G   P      D+       N  GAF+
Sbjct: 67  SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 122

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             IVTGAS GIG          G  VI    +                 AK D +E D++
Sbjct: 10  VVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGE-------------AKYDHIECDVT 56

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           +   V+            +++L+N AGI        +S          N  G +Y
Sbjct: 57  NPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYY 111

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           +D +G    VTGA  GIG  T       G  V   D+                       
Sbjct: 3   MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE------------QYPFAT 50

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI-CGTPFM-LSKDNIELHFATNHLGAF 137
             +D++  A V +      A    L+ L+N AGI        LSK++ +  FA N  GAF
Sbjct: 51  EVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAF 110

Query: 138 Y 138
            
Sbjct: 111 N 111

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
              A+VTGA  GIG E  ++LA    HVI   R   +   V   I  ++   +      D
Sbjct: 44  NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI--KSFGYESSGYAGD 101

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           +S    + +  +        ++IL+N AGI
Sbjct: 102 VSKKEEISEVINKILTEHKNVDILVNNAGI 131

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           ++  G  A+VTGAS GIG     +LA RG  VI    + +  + +   +           
Sbjct: 5   MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-----GDNGKG 59

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
           M L++++  S+       T     ++IL+N AGI
Sbjct: 60  MALNVTNPESIEAVLKAITDEFGGVDILVNNAGI 93

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G TA+VTGA+ GIG      LA  G  VI++D N    +    +I       K   +  D
Sbjct: 6   GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAAD 60

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           +S   SV+   ++  A    ++IL+N A I
Sbjct: 61  ISDPGSVKALFAEIQALTGGIDILVNNASI 90

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTG +SG+G E  ++L   G  V  +D N AAG+ +   +       +   +  
Sbjct: 5   QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRH 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFM--LSKDNIELHFATNHLGAFY 138
           D+SS A      +    R   LN+L+N AGI     M     ++       N    F 
Sbjct: 60  DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFI 117

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
              AIVTGAS GIG      LA RG  VI      A    +  A   +    +     L+
Sbjct: 28  KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF--KQAGLEGRGAVLN 85

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           ++   +V             LN+L+N AGI
Sbjct: 86  VNDATAVDALVESTLKEFGALNVLVNNAGI 115

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
                I+TG SSG+G       A  G  V++  R      + K+ I  +    ++  +++
Sbjct: 5   KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEI--EQFPGQILTVQM 62

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D+ +   ++K       +   ++ILIN A  
Sbjct: 63  DVRNTDDIQKMIEQIDEKFGRIDILINNAAG 93

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA+VTG S GIG      LA  G  V    RN     D       ++   KV+    
Sbjct: 8   EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW--RSKGFKVEASVC 65

Query: 83  DLSSLASVRKFASDFTARAL-PLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           DLSS +  ++  +         LNIL+N AGI         + ++  L  + N   A++
Sbjct: 66  DLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYH 124

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  AIVTGA +GIG    R LA  G HV+ AD +  A       I     A +VDV   
Sbjct: 28  AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDV--- 84

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFML--SKDNIELHFATNHLGAFY 138
             S    +        A    ++ L+  AG+     ++  + ++ +   A N  GA+ 
Sbjct: 85  --SDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWL 140

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             I   A  GIG +T+R L  R +   +    +     +       NP   +     D++
Sbjct: 7   NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA-INPKVNITFHTYDVT 65

Query: 86  -SLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY 138
             +A  +K       +   ++ILIN AGI      L    IE   A N  G   
Sbjct: 66  VPVAESKKLLKKIFDQLKTVDILINGAGI------LDDHQIERTIAINFTGLVN 113

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280

 Score = 60.2 bits (147), Expect = 5e-12
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  AIVTGASSGIG     + A  G  V++  RN  A  ++   I       +   +  
Sbjct: 7   EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG--GEAAALAG 64

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFML---SKDNIELHFATNHLGAFY 138
           D+   A           R   L+   N AG  G    +   S +       TN   AF 
Sbjct: 65  DVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFL 123

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266

 Score = 60.2 bits (147), Expect = 5e-12
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 3   GPSEFSASSTAEEVTQGIDAAGVTAIVTGAS-SGIGAETTRVLALRGVHVIMADRNMAAG 61
           GP   + S   +E+       G   +VT A+ +GIG+ T R   L G  V+++D +    
Sbjct: 1   GPGSMNLSEAPKEIDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRL 60

Query: 62  RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
            + +  +       +V+ +  D++S  +V    +    +A  L++L+N AG+
Sbjct: 61  GETRDQLA-DLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGL 111

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               A +TG  SGIG     +    G H ++A R++         +       +   + +
Sbjct: 26  RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLSM 84

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
           D+ +  +V             ++ILIN A  
Sbjct: 85  DVRAPPAVMAAVDQALKEFGRIDILINCAAG 115

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 15/118 (12%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTGA+ GIG      L   G  V +ADR +A               A    +  
Sbjct: 27  EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGI-------------AADLHLPG 73

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           DL   A          A    L+I++N AG+         +  +  L    N    F 
Sbjct: 74  DLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFR 131

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               AI+TG + GIG  T ++    G  V++AD     G+ V   I        +  +  
Sbjct: 15  QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVHC 71

Query: 83  DLSSLASVRKFASDFTARAL-PLNILINKAGICGTPFM----LSKDNIELHFATNHLGAF 137
           D++    VR    D T      L+I+    G+  T          ++ +     N  GAF
Sbjct: 72  DVTKDEDVRN-LVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 130

Query: 138 Y 138
            
Sbjct: 131 L 131

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 15/115 (13%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TGA+ G+G    R  AL+G  ++++ R   A  ++   +           +  DL+
Sbjct: 2   RVLITGATGGLGGAFAR--ALKGHDLLLSGRRAGALAELAREV-------GARALPADLA 52

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGT-PFM-LSKDNIELHFATNHLGAFY 138
                +         A PL++L++  G  G        +D +E   A + L A +
Sbjct: 53  DELEAKALL----EEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAF 103

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248

 Score = 59.4 bits (145), Expect = 7e-12
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           I   G  ++VTG++ GIG      LA  G  VI+   +    + V   I       K   
Sbjct: 3   IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIA-NKYGVKAHG 61

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
           +E++L S  S+ K   +       ++IL+N AGI
Sbjct: 62  VEMNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266

 Score = 59.4 bits (145), Expect = 8e-12
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
              T +VTG + GIG       A  G  +    RN     +       Q    +V     
Sbjct: 13  KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW--QKKGFQVTGSVC 70

Query: 83  DLSSLASVRKFASDFTAR-ALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           D S      K     ++     L+ILIN  G     P +  + ++   H +TN   A++
Sbjct: 71  DASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYH 129

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254

 Score = 59.4 bits (145), Expect = 8e-12
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A VTGA SGIG E  R  A  G  +I+ DR  AA       +     AA    +  D
Sbjct: 11  GACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL----GAAVAARIVAD 66

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGIC 114
           ++   ++   A++      P++IL+N AGI 
Sbjct: 67  VTDAEAMTAAAAE-AEAVAPVSILVNSAGIA 96

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score = 59.4 bits (145), Expect = 9e-12
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTG S G+G    + LA  G  V++A RN+    +    +  +    +      D
Sbjct: 21  GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAFRCD 79

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           +S+   V+K       +   L+ ++N AGI
Sbjct: 80  VSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 109

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249

 Score = 59.4 bits (145), Expect = 9e-12
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A++TG ++GIG       A+ G  + +AD   A     +    ++N   +V  ++ D+S
Sbjct: 9   LAVITGGANGIGRAIAERFAVEGADIAIADLVPAP----EAEAAIRNLGRRVLTVKCDVS 64

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
               V  F     +     +IL+N AGI    PF  L+ +  +  F  N    F 
Sbjct: 65  QPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFL 119

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266

 Score = 59.5 bits (145), Expect = 1e-11
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
               G  A+VTGA+ GIG    R    +G  V +        +++   +        V V
Sbjct: 23  FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFV 77

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
              +LS   S+++ A         ++IL+N AGI
Sbjct: 78  FSANLSDRKSIKQLAEVAEREMEGIDILVNNAGI 111

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
               ++TGA+ GIG  T  + A  G  ++  D      R+   A+           + +D
Sbjct: 5   DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMD 57

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           ++  ASV +  ++  A    L+ +++ AGI
Sbjct: 58  VADPASVERGFAEALAHLGRLDGVVHYAGI 87

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             ++TGAS GIGA   R    R   V+   R++    D  +  V             D+S
Sbjct: 30  VVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTV-----------AGDIS 78

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
              +  +   +   R   ++ L+N AG+
Sbjct: 79  KPETADRIVREGIERFGRIDSLVNNAGV 106

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
             T IVTG + GIG   TR +A  G +V +  R+ A   +V   +  +    K    + D
Sbjct: 14  NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCD 72

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           +S+   V K      A   P++ LI  AG+    P   L+ ++    +  N  G F 
Sbjct: 73  VSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFN 129

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
              A+VTG +SG+G  TT+ L   G  V++ D     G DV   +  +   A  DV    
Sbjct: 9   DAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR---GEDVVADLGDRARFAAADV---- 61

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDN 124
            +  A+V   A D       L I++N AG      +LS+D 
Sbjct: 62  -TDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDG 100

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTG + GIG   +  LA  G  + +AD      +  +   +++    K   + LD++
Sbjct: 4   VAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVT 63

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
             A+      +   +    ++L+N AGI    P + +++++++  ++ N    F+
Sbjct: 64  DKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFF 118

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTGA+ GIGA    V A  G  V+  D + AA    +VA            + L
Sbjct: 212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVA-----DKVGGTALTL 266

Query: 83  DLSSLASVRKFASDFTARA-LPLNILINKAGI 113
           D+++  +V K  +  T      ++IL+N AGI
Sbjct: 267 DVTADDAVDKITAHVTEHHGGKVDILVNNAGI 298

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVH-------VIMADRNMAAGRDVKVAIVMQNPAAKVD 78
             ++TGA  GIG       A    H       ++++ R  A    + +    +   A  D
Sbjct: 4   ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC--RAEGALTD 61

Query: 79  VMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
            +  D+S +A VR+  +    R   ++ L+N AG+
Sbjct: 62  TITADISDMADVRRLTTHIVERYGHIDCLVNNAGV 96

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               AI+TGA  GIG ET+RVLA  G  V++AD           ++             +
Sbjct: 10  ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVV 64

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFML----SKDNIELHFATNHLGAFY 138
           DL++  SVR            L+I+ N A       ML    + D  +  F  N  G   
Sbjct: 65  DLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTML 124

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D  G   ++TG+S GIG  T R+ A  G  V +  R   A  D  +A + +         
Sbjct: 4   DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASM-RADGGDAAFF 62

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAF 137
             DL++  + ++   +F A+   +++LIN AG      P   +     +     N     
Sbjct: 63  AADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVV 122

Query: 138 Y 138
            
Sbjct: 123 M 123

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A++TG +SG+G          G  V + D++    R+++VA            +  
Sbjct: 4   TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVG 58

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTP---FMLSKDNIELHF----ATNHLG 135
           D+ SL   ++ A    A    ++ LI  AGI         L +D I+  F      N  G
Sbjct: 59  DVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKG 118

Query: 136 AFY 138
             +
Sbjct: 119 YIH 121

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA---KVDVMEL 82
             ++TGASSG G  T   LA  G  V  + R++       V  +          +  +EL
Sbjct: 7   IILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLEL 66

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFM--LSKDNIELHFATNHLGA 136
           D+ S  SV +           +++LI+ AG          + +     +  N L  
Sbjct: 67  DVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLST 122

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261

 Score = 57.5 bits (140), Expect = 4e-11
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 3/118 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G   ++TG+S+G+G       A     V++  R+     +  V   ++    +   ++ 
Sbjct: 6   EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEAN-SVLEEIKKVGGEAIAVKG 64

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           D++  + V             L+++IN AG+        +S  +      TN  GAF 
Sbjct: 65  DVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFL 122

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256

 Score = 57.5 bits (140), Expect = 4e-11
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 10/118 (8%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG   +VTG + GIG    +  A  G  V + D         +        A      ++
Sbjct: 5   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE--------AIGGAFFQV 56

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           DL       +F  +       +++L+N A I      + +           N     +
Sbjct: 57  DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMH 114

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249

 Score = 57.5 bits (140), Expect = 4e-11
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           ID  G T+++TGASSGIG+   R+L   G  VI++  N    + +  A+          +
Sbjct: 10  IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTI 64

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
              +L++        S  +     L+IL+  AGI
Sbjct: 65  EVCNLANKEECSNLISKTSN----LDILVCNAGI 94

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257

 Score = 57.3 bits (139), Expect = 5e-11
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 25/114 (21%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             +++G ++GIGA T +VL   G  ++  D   A                       DLS
Sbjct: 3   IIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV-------------------IADLS 43

Query: 86  SLASVRKFASDFTARAL-PLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY 138
           +    ++  +D  A+    ++ L+  AG+           +    + N+ GA  
Sbjct: 44  TAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQT-----KVLGNVVSVNYFGATE 92

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVME 81
           G   +VTG S GIG     VL        V    R+ A  + +K          +   + 
Sbjct: 2   GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVV 56

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAFY 138
            D++  + +++  +        ++ L+  AG+         +  +  +  +  N      
Sbjct: 57  GDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVS 116

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           TAIVT      G  +   L+  G  V   D +     +++        A      +L   
Sbjct: 3   TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE--------AFAETYPQLKPM 54

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
           S     +     T+    +++L++    
Sbjct: 55  SEQEPAELIEAVTSAYGQVDVLVSNDIF 82

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269

 Score = 56.8 bits (138), Expect = 9e-11
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 9   ASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI 68
            +  A+    G   A   A VTG   G+GA  +R L   G+ V ++             +
Sbjct: 10  GTLEAQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVS-TWLM 68

Query: 69  VMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             ++         +D++   S  + A    A    +++LIN AGI
Sbjct: 69  HERDAGRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGI 113

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               A+VTGA+ G+G E  + L+   +   +  RN      +            V+ +E 
Sbjct: 4   KKKIAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHLAALAEIE-------GVEPIES 55

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           D+           D       ++ L++ A +   T     S      H   N +    
Sbjct: 56  DIVKEVLEEGGV-DKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAE 112

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247

 Score = 56.3 bits (137), Expect = 1e-10
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           +   G TAIVTG+S G+G      L   G ++++     +   D   A   +     V V
Sbjct: 1   MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLD-ATAEEFKAAGINVVV 59

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI 113
            + D+ +   V             ++IL+N AGI
Sbjct: 60  AKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI 93

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           +A+VTG +SG+G      L  RG  V++ D        +           + DV     +
Sbjct: 4   SALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLI---------YVEGDV-----T 49

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPFMLSKD 123
               VR+ A        PL  +++ AG+     +L K+
Sbjct: 50  REEDVRR-AVARAQEEAPLFAVVSAAGVGLAEKILGKE 86

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
              A++T  + G+G + T  L  +G  V +   +     +       ++   ++  ++ D
Sbjct: 7   VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETY-KDVEERLQFVQAD 65

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGT 116
           ++    + K   +  +    ++ LIN AG    
Sbjct: 66  VTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVF 98

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
            A+VTG+S G+G      LA  G ++++   R+  A  +    I  +    KV V++ ++
Sbjct: 6   CALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEI--EKLGVKVLVVKANV 63

Query: 85  SSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
              A +++           L++ +N A      P M L + + +     N     +
Sbjct: 64  GQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLF 119

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 15/118 (12%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           A    +VTG S GIG     +L     H ++      +     +  +           + 
Sbjct: 3   AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFI-----------KA 51

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           DL+    +         + +  + +   AGI        +  ++I+     N   + Y
Sbjct: 52  DLTKQQDITNVLD--IIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIY 107

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A VTG+S GIG       A  G  V +   +  A    +               + +
Sbjct: 34  GKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCN 91

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGIC 114
           +S   SV +  S        +++ +  AG+ 
Sbjct: 92  ISDPKSVEETISQQEKDFGTIDVFVANAGVT 122

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               A+VT ++ GIG    R LA  G HV+++ R           +  Q     V     
Sbjct: 13  ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATL--QGEGLSVTGTVC 70

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI 113
            +       +  +        ++IL++ A +
Sbjct: 71  HVGKAEDRERLVAMAVNLHGGVDILVSNAAV 101

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 3   GPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR 62
           G S      ++  V +G       A+VTGA+  IG      L   G  V++   N A   
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAA 61

Query: 63  DVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL----PLNILINKAGI 113
                 + +  +    V + DL++   +     +            ++L+N A  
Sbjct: 62  VSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASA 116

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A VTG   GIG    + L   G  V+      +  R  K     +         E ++ 
Sbjct: 15  IAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRV-KWLEDQKALGFDFYASEGNVG 73

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
              S ++      A    +++L+N AGI
Sbjct: 74  DWDSTKQAFDKVKAEVGEIDVLVNNAGI 101

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246

 Score = 55.2 bits (134), Expect = 3e-10
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTGAS GIG      LA +G +V++         + +V   ++   +    +  D
Sbjct: 4   GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKAN-EVVDEIKKLGSDAIAVRAD 62

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           +++   V             ++IL+N AG+
Sbjct: 63  VANAEDVTNMVKQTVDVFGQVDILVNNAGV 92

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 1   RKGPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA 60
                  S           +      A+VTGAS GIG      LA  G  V +   + A 
Sbjct: 5   HHHHHHSSGLVPRGSHMTALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAG 64

Query: 61  GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             D +V   +     +   ++ D+S  + V    +    R   L++L+N AGI
Sbjct: 65  AAD-EVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGI 116

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245

 Score = 54.8 bits (133), Expect = 4e-10
 Identities = 20/88 (22%), Positives = 32/88 (36%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A++TGAS GIG      LA  G  + +         +       +  +  V V+  +L 
Sbjct: 3   KALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLL 62

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
              +              L+ L+N AGI
Sbjct: 63  EAEAATALVHQAAEVLGGLDTLVNNAGI 90

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262

 Score = 54.8 bits (133), Expect = 4e-10
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVI---MADRNMAAGRDVKVAIVMQNPAAKVDV 79
                ++ G    +GA T +  AL  V+++      ++      +K  +  Q       +
Sbjct: 10  KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVA--L 67

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAF 137
            + DLS+   V K           ++I IN  G     P +  S+   +     N+  A+
Sbjct: 68  YQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAY 127

Query: 138 Y 138
           +
Sbjct: 128 F 128

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVME 81
           A   AIVTG   GIG    R LA  G  + +    +      V   +      A+V  + 
Sbjct: 28  ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAEL--SGLGARVIFLR 85

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGI 113
            DL+ L+S +       A    ++ L+N AGI
Sbjct: 86  ADLADLSSHQATVDAVVAEFGRIDCLVNNAGI 117

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244

 Score = 54.4 bits (132), Expect = 5e-10
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             +VTGAS GIG      L   G  V++     A   + +V+  ++    +      D+S
Sbjct: 3   VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAE-EVSKQIEAYGGQAITFGGDVS 61

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
             A V             +++++N AGI
Sbjct: 62  KEADVEAMMKTAIDAWGTIDVVVNNAGI 89

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273

 Score = 54.5 bits (132), Expect = 6e-10
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 10  SSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV 69
           +   + +T     AG TA+VTGA SGIG       A  G HV+   R        +VA  
Sbjct: 17  NLYFQSMTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVK---EVADE 73

Query: 70  MQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
           + +     + +  DL+ L      A +  A    +++L+N AGI
Sbjct: 74  IADGGGSAEAVVADLADLEGAANVAEELAATR-RVDVLVNNAGI 116

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 12/119 (10%), Positives = 30/119 (25%), Gaps = 13/119 (10%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +    IV G    +G+         G  V+  D +     D  + +              
Sbjct: 2   SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGN----------K 51

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI---CGTPFMLSKDNIELHFATNHLGAFY 138
           + +         +  + +   ++ +   AG              N +L    +   +  
Sbjct: 52  NWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259

 Score = 54.1 bits (131), Expect = 7e-10
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 6/120 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVME 81
              T +V GA   IG       A  G +V++               I           ++
Sbjct: 7   TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIK 64

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAFY 138
            DL++ A V    S    +   ++ L++ AG          + +         N    F 
Sbjct: 65  ADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFL 124

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246

 Score = 54.0 bits (131), Expect = 8e-10
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
             +A+VTGAS GIG      LA  G +V +         +  V   ++        ++ +
Sbjct: 4   TKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAE-AVVEEIKAKGVDSFAIQAN 62

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGI 113
           ++    V+    +  ++   L++L+N AGI
Sbjct: 63  VADADEVKAMIKEVVSQFGSLDVLVNNAGI 92

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 3   GPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR 62
           G S      ++  V +       + +VTG + GIG    R  A  G  V +  R+     
Sbjct: 2   GSSHHHHHHSSGLVPR--SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRS----- 54

Query: 63  DVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
                     P      ++ D++    V +   +      P+ +LI  AG+
Sbjct: 55  --------GEPPEGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV 97

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 9   ASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI 68
            ++  E           + +VTG + GIG    + LA  G  V +  R   A        
Sbjct: 2   TATATEGAKP--PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA-------- 51

Query: 69  VMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
                   +  +E+D++   +V +  +       P+ +L++ AG+
Sbjct: 52  -----PKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL 91

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 13/118 (11%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VT A    G      L   G  V+  D + A   +       ++       +     
Sbjct: 3   IALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAE---RQRFESENPGTIAL----- 54

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPFML-----SKDNIELHFATNHLGAFY 138
           +     +           ++ +++   I      L     S+ +I   F    +    
Sbjct: 55  AEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPIL 112

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
             +VTG S GIGA   R+ A +G  V +    N  A   V  AI       +   +  D+
Sbjct: 28  VVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESG--GEAVAIPGDV 85

Query: 85  SSLASVRKFASDFTARALPLNILINKAGI--CGTPFM-LSKDNIELHFATNHLGAFY 138
            + A +    S    +   L+ L+N AGI         +S + IE     N  G+  
Sbjct: 86  GNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSIL 142

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 12  TAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVM 70
           T     Q +      AIVTGAS GIGA     LA  G  V++      AA  +V   I  
Sbjct: 15  TENLYFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA 74

Query: 71  QNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELH 128
               A     + D+S  A+VR+  +        +++L+N AGI   T          +  
Sbjct: 75  AGGKAL--TAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRV 132

Query: 129 FATNHLGAFY 138
            A N  G F 
Sbjct: 133 IAVNLKGTFN 142

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 17/133 (12%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               A++TG +  IG      L  +G  V++  R+        VA +    A    + + 
Sbjct: 10  ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKG 69

Query: 83  DLSSLASVRKFASDFTARAL----PLNILINKAGI-CGTPFMLSKDNIEL---------- 127
           DLS  +S+     D    +       ++L+N A     TP +   D              
Sbjct: 70  DLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQV 129

Query: 128 --HFATNHLGAFY 138
              F +N +   +
Sbjct: 130 AELFGSNAVAPLF 142

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
             +VTGASSG G          G  VI   R   A  D+           + + + LD++
Sbjct: 7   VWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLV-----AAYPDRAEAISLDVT 61

Query: 86  SLASVRKFASDFTARALPLNILINKAG--ICGTPFMLSKDNIELHFATNHLGAF 137
               +   A+D  AR   +++L+N AG    G     ++  +   F  +  G  
Sbjct: 62  DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPA 115

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 13/119 (10%), Positives = 27/119 (22%), Gaps = 13/119 (10%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
                +V G    +G+   +    R   V   D          V + M            
Sbjct: 6   EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMT----------D 55

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAFY 138
             +  A               ++ ++  AG              N +L +  +   +  
Sbjct: 56  SFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTI 114

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-----GRDVKVAIVMQNPAAKV 77
           AG T  +TGAS GIG       A  G ++++A +         G     A  ++    K 
Sbjct: 44  AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKA 103

Query: 78  DVMELDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLG 135
               +D+     +         +   ++IL+N A     T  +      ++L    N  G
Sbjct: 104 LPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRG 163

Query: 136 AFY 138
            + 
Sbjct: 164 TYL 166

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 3   GPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAG 61
            PS    SS   + ++ +   G  A+ TGA  GIG      L  RG  V++    +  A 
Sbjct: 2   APSADITSSGPSDASKPLA--GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAA 59

Query: 62  RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM- 119
            +V   +           ++ D+S  + V        +    L+ +++ +G+      + 
Sbjct: 60  EEVVAELKKLGAQGV--AIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELE 117

Query: 120 LSKDNIELHFATNHLGAFY 138
           ++++  +  F  N  G F+
Sbjct: 118 VTQELFDKVFNLNTRGQFF 136

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 26  TAIVTGASSGIGAETTRVLA---LRGVHVIMADRNMAAGRD-VKVAIVMQNPAAKVDVME 81
             ++TG SSGIG      LA    +   V    R++       + A  +  P   ++ ++
Sbjct: 4   VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ 63

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICGTPFM--LSKDNIELHFATNHLGA 136
           LD+    SV       T     +++L+  AG+     +  L +D +      N +G 
Sbjct: 64  LDVRDSKSVAAARERVTEG--RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGT 118

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 3   GPSEFSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAG 61
                  +       Q     G  A+VTGA  GIG E    L  RG  VI+    +  + 
Sbjct: 8   RGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESA 67

Query: 62  RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM- 119
            +V  AI      A    ++ ++  +  + +   +       L+I+ + +G+        
Sbjct: 68  EEVVAAIKKNGSDAA--CVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKD 125

Query: 120 LSKDNIELHFATNHLGAFY 138
           ++ +  +  F  N  G F+
Sbjct: 126 VTPEEFDRVFTINTRGQFF 144

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 9   ASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI 68
           A         G    G  A+V   +  +G  +  +LA  G  V++  R +   +    ++
Sbjct: 104 AGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 163

Query: 69  VMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAG 112
              N   KV+V   + +  AS  +            + +     
Sbjct: 164 ---NKRFKVNVTAAETADDASRAEAVKG-------AHFVFTAGA 197

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 22/88 (25%), Positives = 31/88 (35%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
              +TG++SGIGA    +LA  G  VI  DR  A           +  A    +      
Sbjct: 3   VIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGV 62

Query: 86  SLASVRKFASDFTARALPLNILINKAGI 113
               V       TA    L + +N  G+
Sbjct: 63  LDGLVCCAGVGVTAANSGLVVAVNYFGV 90

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239

 Score = 50.9 bits (123), Expect = 9e-09
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTG S GIG      L  RG  V +A RN                +     +  DL 
Sbjct: 4   KALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQ----------SLGAVPLPTDLE 53

Query: 86  SLASVRKFASDFTARALPLNILINKAGIC 114
                +            L++L++ A + 
Sbjct: 54  K-DDPKGLVKRALEALGGLHVLVHAAAVN 81

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G   +VTGAS GIG      L   G  V +  R++   R V      Q+   +   +  
Sbjct: 4   NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA--QSLGGQCVPVVC 61

Query: 83  DLSSLASVRKFASDFTARAL-PLNILINKAGICGTPFMLSKDN 124
           D S  + VR             L++L+N A       + +++ 
Sbjct: 62  DSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNK 104

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267

 Score = 51.0 bits (123), Expect = 9e-09
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 4/119 (3%)

Query: 24  GVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVME 81
           G   +VTGAS   G+G E  R  A  G  V +   + A G +  V  + +    K    +
Sbjct: 20  GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYK 79

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
             + S  S  K   D  A    ++  I  AG    +  +  S +        +  G F+
Sbjct: 80  CQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFH 138

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 19/118 (16%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
                +V  AS GIG     VL+  G  V +  RN    +      V             
Sbjct: 18  RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV------------- 64

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGI-CGTPFM-LSKDNIELHFATNHLGAFY 138
               +  +RK       +   ++IL+  AG      F  L+ ++ +    +  L    
Sbjct: 65  ----VCDLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIK 118

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMA--DRNMAAGRDVKVAIVMQNPAAKVDVM 80
               A+VTG  SGIG       A  G  V +          + VK  I  +    K  ++
Sbjct: 48  KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALI--EECGRKAVLL 105

Query: 81  ELDLSSLASVRKFASDFTARAL-PLNILINKAGI---CGTPFMLSKDNIELHFATNHLGA 136
             DLS  +  R         AL  L+IL   AG          L+ +  +  FA N    
Sbjct: 106 PGDLSDESFARSLV-HKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFAL 164

Query: 137 FY 138
           F+
Sbjct: 165 FW 166

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 31/125 (24%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVME 81
            G  A+VTGAS GIG    + LA  G  V +          +    I  Q+       + 
Sbjct: 6   KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI--QSNGGSAFSIG 63

Query: 82  LDLSSLASVRKFASDFTARALP------LNILINKAGI-CGTPFM-LSKDNIELHFATNH 133
            +L SL  V    S               +ILIN AGI  G      ++   +   + N 
Sbjct: 64  ANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNA 123

Query: 134 LGAFY 138
              F+
Sbjct: 124 KAPFF 128

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVME 81
           AG TA VTG S GIGA   + LAL G  V +         + V   I  +    +   + 
Sbjct: 30  AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEI--EQAGGRAVAIR 87

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
            D     ++ +   +       L+IL+N AGI    P    +  + +   A N    F 
Sbjct: 88  ADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFV 146

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVME 81
            G  A+VTG+  GIGA     L   G  V++    +      V   I      A    ++
Sbjct: 17  DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAI--AIK 74

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
            D+  +  + K      A    L+I ++ +G+        ++++  +  F+ N  G F+
Sbjct: 75  ADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFF 133

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 26/119 (21%)

Query: 22  AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVME 81
           +  +  ++ GAS  +G+     L  +   VI A R+                      + 
Sbjct: 1   SNAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGD-------------------VT 40

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICG-TPFM-LSKDNIELHFATNHLGAFY 138
           +D++++ S++K           ++ +++  G    +P   L+ +   +  ++   G   
Sbjct: 41  VDITNIDSIKKMYEQVG----KVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQIN 95

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-----AGRDVKVAIVMQNPAAKV 77
            G T  ++G S GIG    + +A  G +V +  ++        G     A  ++    + 
Sbjct: 8   RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQA 67

Query: 78  DVMELDLSSLASVRKFASDFTARALPLNILINKAGI-CGTPFM-LSKDNIELHFATNHLG 135
             +  D+    +V    +    +   ++I +N A          +     +L       G
Sbjct: 68  LPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRG 127

Query: 136 AF 137
            +
Sbjct: 128 TY 129

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-----GRDVKVAIVMQNPAAKV 77
           +G T  +TGAS GIG       A  G +V +A ++  A     G     A  +     + 
Sbjct: 5   SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQG 64

Query: 78  DVMELDLSSLASVRKFASDFTARALPLNILINKAGI-CGTPFM-LSKDNIELHFATNHLG 135
             ++ D+     VR   +        ++IL+N A        +       +L    N  G
Sbjct: 65  LALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARG 124

Query: 136 AF 137
           +F
Sbjct: 125 SF 126

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA------- 75
                +VTG + G G      LA  G  +I+ D              +            
Sbjct: 9   QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIET---NEYPLATSRDLEEAGLE 65

Query: 76  ------KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHF 129
                 K    E+D+   A+V +  ++  A    L++++  AGIC     L        F
Sbjct: 66  VEKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAF 125

Query: 130 ATNHLGAFY 138
             + +G   
Sbjct: 126 DVDFVGVIN 134

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 33/151 (21%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
                 A+VTGA+  +G      L   G  V +     AA  +   A +          +
Sbjct: 6   APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITV 65

Query: 81  ELDLSSLASVRKFASDFTARAL-----------------PLNILINKAGI---------- 113
           + DLS++A+     +D +A                      ++L+N A            
Sbjct: 66  QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRND 125

Query: 114 ------CGTPFMLSKDNIELHFATNHLGAFY 138
                 C       +      F +N +  ++
Sbjct: 126 EDGHEPCVGDREAMETATADLFGSNAIAPYF 156

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVME 81
            G   ++TG  SGIG   +   A  G ++ +A  +      + K  +  +    K  ++ 
Sbjct: 46  KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYV--EKEGVKCVLLP 103

Query: 82  LDLSSLASVRKFASDFTARAL-PLNILINKAGI---CGTPFMLSKDNIELHFATNHLGAF 137
            DLS     +      T R L  LNIL+N             ++ + +E  F  N    F
Sbjct: 104 GDLSDEQHCKDIV-QETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYF 162

Query: 138 Y 138
           +
Sbjct: 163 H 163

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 33/149 (22%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               A+VTGA+  +G      L   G  V +     AA  +   A +          ++ 
Sbjct: 45  TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQA 104

Query: 83  DLSSLASVRKFASDFTARAL-----------------PLNILINKAGI------------ 113
           DLS++A+     +D +A                      ++L+N A              
Sbjct: 105 DLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDED 164

Query: 114 ----CGTPFMLSKDNIELHFATNHLGAFY 138
               C       +      F +N +  ++
Sbjct: 165 GHEPCVGDREAMETATADLFGSNAIAPYF 193

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 14/107 (13%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV-KVAIVMQNPAA------ 75
            G  A VTGA+ G G      LA  G  +I  D        V   AI    P        
Sbjct: 10  EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETAD 69

Query: 76  -------KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG 115
                  ++   E+D+    +++        +   L+I++  AGI  
Sbjct: 70  LVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGN 116

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA------- 75
            G  A +TGA+ G G      LA  G  +I  D  + A     V     +P         
Sbjct: 14  QGRVAFITGAARGQGRSHAVRLAAEGADIIACD--ICAPVSASVTYAPASPEDLDETARL 71

Query: 76  ------KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG 115
                 K     LD+   A++R+  +D   +   L++++  AG+  
Sbjct: 72  VEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLS 117

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA------- 75
            G  A +TGA+ G G      +A  G  +I  D        V       +  +       
Sbjct: 10  EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVE 69

Query: 76  ----KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG 115
               ++    +D      +RK   D  A    L+I++  AG+  
Sbjct: 70  AANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAA 113

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 16/106 (15%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA------- 75
            G  A +TGA+ G G      LA  G  +I  D          V   +  P         
Sbjct: 12  TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIA---SVPYPLATPEELAATVKL 68

Query: 76  ------KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG 115
                 ++   + D+    S+             L+I++  AGI  
Sbjct: 69  VEDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP 114

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA------- 75
            G  A +TGA+ G G      LA  G  +I  D          V + M  P         
Sbjct: 27  EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLD---GVKLPMSTPDDLAETVRQ 83

Query: 76  ------KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSK 122
                 ++   ++D+    +++    D   +   L+I++  A +      L++
Sbjct: 84  VEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNR 136

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA------- 75
            G  A +TGA+ G G      LA  G  ++  D      +   +     +P         
Sbjct: 45  QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDL---CRQQPNLDYAQGSPEELKETVRL 101

Query: 76  ------KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGIC 114
                 ++   + D+  LAS++    +  A    ++IL++  GI 
Sbjct: 102 VEEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGIS 146

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA------- 75
            G TA++TG + G+G      LA  G  + + DR         V   +            
Sbjct: 9   EGKTALITGGARGMGRSHAVALAEAGADIAICDR---CENSDVVGYPLATADDLAETVAL 65

Query: 76  ------KVDVMELDLSSLASVRKFASDFTARALPLNILINKAGIC 114
                 +    ++D+   A++  F ++       ++I I  AGI 
Sbjct: 66  VEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS 110

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 15/75 (20%)

Query: 23  AGVTAIVTGASSG-IGAETTRVLALRGVHVIMA----DRNMA----------AGRDVKVA 67
                ++TGA  G IGAE  + L   G  V++      + +             +   + 
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLI 534

Query: 68  IVMQNPAAKVDVMEL 82
           +V  N  +K DV  L
Sbjct: 535 VVPFNQGSKQDVEAL 549

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 18/134 (13%)

Query: 17  TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAK 76
              +   G   +VTGA  G+G       A RG  V++ D     G D K      + A K
Sbjct: 2   ASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVND----LGGDFKGVGKGSSAADK 57

Query: 77  VDVMELD------LSSLASVRKFASDFTARALP----LNILINKAGIC--GTPFMLSKDN 124
           V V E+       +++  SV          AL     +++++N AGI    +   +S ++
Sbjct: 58  V-VEEIRRRGGKAVANYDSVEA-GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDED 115

Query: 125 IELHFATNHLGAFY 138
            ++    +  G+F 
Sbjct: 116 WDIIQRVHLRGSFQ 129

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 22/133 (16%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           +   G  A+VTGA +G+G E   + A RG  V++ D     G         Q  A  V V
Sbjct: 15  LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVND----LGGTHSGDGASQRAADIV-V 69

Query: 80  MEL------------DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNI 125
            E+             +   A V + A     R   ++IL+N AGI    +    S+ + 
Sbjct: 70  DEIRKAGGEAVADYNSVIDGAKVIETAIKAFGR---VDILVNNAGILRDRSLVKTSEQDW 126

Query: 126 ELHFATNHLGAFY 138
            L    +  G+F 
Sbjct: 127 NLVNDVHLKGSFK 139

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 18/131 (13%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           +D      I+TGA  G+G   +   A  G  V++ D     G  +         A  V V
Sbjct: 4   VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVND----LGGALNGQGGNSKAADVV-V 58

Query: 80  MELD------LSSLASVRKFASDFTARALP----LNILINKAGIC--GTPFMLSKDNIEL 127
            E+       ++   +V          A+     ++++IN AGI    +   +++ + +L
Sbjct: 59  DEIVKNGGVAVADYNNVLDGDK-IVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKL 117

Query: 128 HFATNHLGAFY 138
               +  GAF 
Sbjct: 118 VIDVHLNGAFA 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.97
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.97
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.96
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.96
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.95
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.95
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.95
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.94
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.94
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.94
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.94
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.94
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.94
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.94
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.94
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.94
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.94
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.94
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.94
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.94
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.94
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.94
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.94
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.94
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.94
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.94
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.94
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.94
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.94
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.94
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.94
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.94
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.94
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.93
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.93
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.93
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.93
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.93
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.93
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.93
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.93
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.93
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.93
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.93
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.93
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.93
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.93
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.93
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.93
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.93
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.93
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.93
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.93
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.93
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.93
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.93
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.93
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.93
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.93
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.93
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.93
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.93
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.93
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.93
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.93
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.93
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.93
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.93
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.93
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.93
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.93
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.93
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.93
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.93
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.93
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.93
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.93
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.93
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.93
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.93
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.93
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.93
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.93
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.93
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.92
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.92
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.92
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.92
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.92
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.92
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.92
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.92
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.92
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.92
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.92
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.92
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.92
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.92
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.92
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.92
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.92
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.92
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.92
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.92
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.92
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.92
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.92
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.92
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.92
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.92
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.92
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.92
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.92
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.91
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.91
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.91
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.91
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.91
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.91
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.91
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.91
1spx_A	278	Short-chain reductase family member (5L265); paral	99.91
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.91
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.91
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.91
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.91
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.91
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.91
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.91
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.91
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.91
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.91
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.91
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.91
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.91
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.91
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.91
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.91
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.91
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.91
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.91
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.91
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.91
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.91
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.9
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.9
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.9
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.9
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.9
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.9
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.9
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.9
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.9
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.9
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.9
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.9
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.9
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.9
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.9
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.9
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.9
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.9
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.9
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.9
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.9
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.9
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.89
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.89
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.89
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.89
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.89
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.89
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.89
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.89
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.88
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.88
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.88
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.88
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.88
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.88
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.88
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.88
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.88
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.87
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.87
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.87
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.87
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.87
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.87
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.87
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.87
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.86
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.86
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.86
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.86
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.86
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.85
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.85
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.85
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.85
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.84
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.84
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.84
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.84
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.83
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.83
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.83
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.83
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.83
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.82
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.82
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.82
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.81
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.81
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.81
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.8
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.8
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.8
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.78
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.78
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.77
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.77
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.75
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.72
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.71
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.69
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.69
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.68
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.68
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.67
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.66
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.65
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.64
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.62
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.62
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.62
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.62
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.62
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.61
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.6
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.6
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.6
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.59
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.58
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.58
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.58
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.58
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.57
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.57
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.57
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.57
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.56
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.56
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.54
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.54
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.53
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.51
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.51
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.5
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.5
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.49
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.49
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.48
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.48
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.47
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.46
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.45
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.45
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.44
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.44
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.44
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.43
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.43
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.42
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.42
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.42
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.4
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.39
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.39
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.39
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.39
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.37
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.37
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.36
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	99.36
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.36
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.35
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.34
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.34
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.34
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.33
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.32
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.32
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.31
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.31
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.3
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.29
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.29
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.29
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.29
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.27
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.25
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.25
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.24
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.22
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.22
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.21
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.21
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.2
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.18
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.17
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	99.16
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.15
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.13
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	99.12
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	99.11
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.07
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.05
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	99.03
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.02
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.97
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.92
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.91
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.87
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.81
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.8
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.76
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.76
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.75
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.74
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.72
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.71
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.7
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.69
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.68
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.65
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.65
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.65
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.63
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.6
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.56
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	98.56
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.5
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.44
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.44
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	98.43
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	98.43
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	98.39
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.38
3gms_A	340	Putative NADPH:quinone reductase; structural genom	98.37
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.37
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.37
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.36
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	98.34
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	98.31
4eye_A	342	Probable oxidoreductase; structural genomics, niai	98.31
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.27
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.26
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.22
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.21
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.21
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	98.19
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.19
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.17
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.17
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.17
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	98.16
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	98.15
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	98.13
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.09
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	98.07
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	98.07
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	98.07
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.01
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.99
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.95
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.95
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.9
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.9
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.88
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.88
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.86
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.82
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.82
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.82
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.81
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.81
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.8
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.77
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	97.77
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	97.77
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.76
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.75
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.72
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.72
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.72
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.72
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.69
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	97.68
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.68
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.68
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.64
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.63
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.62
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	97.61
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.61
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.57
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.56
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.54
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.53
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.53
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.52
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.52
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.51
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.5
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.48
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	97.45
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.44
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.44
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.42
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.41
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.4
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.38
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.37
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.37
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.34
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.34
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.33
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.3
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.28
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.28
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.28
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.27
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.26
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.26
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.25
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.24
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.23
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	97.22
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.18
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.17
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.17
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	97.17
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.16
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	97.15
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.14
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.14
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.14
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.13
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.13
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.12
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.11
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.09
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.07
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.06
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.04
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.02
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.01
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	97.0
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.99
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.98
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.98
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.96
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.93
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.92
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.91
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.89
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.88
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.83
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.81
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.8
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.8
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.78
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.77
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.74
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.72
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.7
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.7
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.7
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.69
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.67
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.66
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.65
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	96.65
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.63
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.63
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.62
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.61
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.61
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.59
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.59
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.57
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	96.55
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.54
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.53
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.51
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	96.5
1lnq_A	336	MTHK channels, potassium channel related protein;	96.49

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.97  E-value=3.1e-31  Score=186.42  Aligned_cols=121  Identities=26%  Similarity=0.316  Sum_probs=110.5

Q ss_pred             hccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           16 VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        16 ~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      |+.+++++||+++||||++|||+++|+.|+++|++|++++|+++.+++..+++...  +.++..+++|++|+++++++++
T Consensus         1 Ms~~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~--g~~~~~~~~Dv~~~~~v~~~~~   78 (255)
T 4g81_D            1 MTALFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFDVTDELAIEAAFS   78 (255)
T ss_dssp             --CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHH
T ss_pred             CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999988888776  5789999999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           96 DFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++.+++|+||+||||||+..  +..+++.|+|++++++|+.|+|+
T Consensus        79 ~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~  123 (255)
T 4g81_D           79 KLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFL  123 (255)
T ss_dssp             HHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence            99999999999999999873  56689999999999999999874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.97  E-value=1.2e-30  Score=183.40  Aligned_cols=117  Identities=25%  Similarity=0.256  Sum_probs=108.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++||+++||||++|||+++|+.|+++|++|++++|+++.+++..+++...  +.++.++++|++|+++++++++++.+
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM--GKEVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999988776  67899999999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||+..   +..+.+.|+|+++|++|+.|+|+
T Consensus        81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~  122 (254)
T 4fn4_A           81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFY  122 (254)
T ss_dssp             HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence            9999999999999763   45689999999999999999874

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.96  E-value=1.1e-29  Score=179.99  Aligned_cols=113  Identities=20%  Similarity=0.278  Sum_probs=104.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++.+++..+++     +.++..+++|++|+++++++++++.++
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~~~  100 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAELDRLYEKVKAE  100 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            488999999999999999999999999999999999999888877776     567889999999999999999999999


Q ss_pred             CCCccEEEECcccC--CCCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||..  .+..+.+.|+|+++|++|+.|+|+
T Consensus       101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~  140 (273)
T 4fgs_A          101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLF  140 (273)
T ss_dssp             HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHH
Confidence            99999999999986  366789999999999999999873

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.96  E-value=3e-28  Score=171.67  Aligned_cols=117  Identities=21%  Similarity=0.244  Sum_probs=103.0

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++++||++|||||++|||+++|+.|+++|++|++++|+.+..+. .+++...  +.++.++++|++|+++++++++++.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~~~--~~~~~~~~~Dv~~~~~v~~~v~~~~   78 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALAQR--QPRATYLPVELQDDAQCRDAVAQTI   78 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHHhc--CCCEEEEEeecCCHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999998876443 3445444  5678899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC-CCCccCHHHHHHHhhhccccccC
Q 042455           99 ARALPLNILINKAGICG-TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++|+||+||||||+.. ...+.+.|+|++++++|+.|+|+
T Consensus        79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~  119 (258)
T 4gkb_A           79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYA  119 (258)
T ss_dssp             HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHH
T ss_pred             HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHH
Confidence            99999999999999874 44578999999999999999863

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.95  E-value=8.2e-28  Score=168.32  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=97.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|++|||||++|||+++|+.|+++|++|++++|+++.+++..    +.  ..++.++++|++|+++++++++++.+++|+
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~----~~--~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~   75 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFA----KE--RPNLFYFHGDVADPLTLKKFVEYAMEKLQR   75 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----TT--CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh--cCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            599999999999999999999999999999999977665433    22  456889999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ||+||||||...  +..+.+.|+|+++|++|+.|+|+
T Consensus        76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~  112 (247)
T 3ged_A           76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYE  112 (247)
T ss_dssp             CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHH
Confidence            999999999873  45689999999999999999873

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.95  E-value=4.1e-27  Score=167.27  Aligned_cols=119  Identities=26%  Similarity=0.305  Sum_probs=108.0

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ...+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++++|++|++++++++++
T Consensus        25 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~  102 (276)
T 3r1i_A           25 LDLFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--GGKALPIRCDVTQPDQVRGMLDQ  102 (276)
T ss_dssp             GGGGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999988888888765  56788999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  145 (276)
T 3r1i_A          103 MTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVF  145 (276)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999874  4457899999999999999876

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.95  E-value=5.1e-27  Score=168.14  Aligned_cols=123  Identities=23%  Similarity=0.242  Sum_probs=108.4

Q ss_pred             hhhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           14 EEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        14 ~~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      .....++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++.... ..++.++.+|++|+++++++
T Consensus        31 ~~~~~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~  109 (293)
T 3rih_A           31 AERKVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADA  109 (293)
T ss_dssp             ---CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHH
T ss_pred             cccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHH
Confidence            33345667899999999999999999999999999999999999999988888886552 25789999999999999999


Q ss_pred             HHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           94 ASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       110 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  155 (293)
T 3rih_A          110 ARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTV  155 (293)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999999874  4557899999999999999876

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.94  E-value=3.9e-27  Score=167.00  Aligned_cols=117  Identities=22%  Similarity=0.315  Sum_probs=107.0

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.
T Consensus        21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~   98 (271)
T 4ibo_A           21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV--GHDAEAVAFDVTSESEIIEAFARLD   98 (271)
T ss_dssp             GGCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999988888888765  5678999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  139 (271)
T 4ibo_A           99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAF  139 (271)
T ss_dssp             HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHH
Confidence            99999999999999874  4457899999999999999876

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.94  E-value=8.8e-27  Score=164.49  Aligned_cols=119  Identities=25%  Similarity=0.258  Sum_probs=108.2

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++....++.++.++.+|++|+++++++++++.
T Consensus         3 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (265)
T 3lf2_A            3 PYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE   82 (265)
T ss_dssp             CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999988888888775555569999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  123 (265)
T 3lf2_A           83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVI  123 (265)
T ss_dssp             HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            99999999999999863  4557899999999999999876

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.94  E-value=1.2e-26  Score=163.56  Aligned_cols=118  Identities=24%  Similarity=0.297  Sum_probs=107.2

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++++|+++||||++|||+++|++|+++|++|++++|+.+.+++...++.... ..++.++++|++|+++++++++++.
T Consensus         5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (262)
T 3pk0_A            5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAV   83 (262)
T ss_dssp             TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999888888876652 3679999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  124 (262)
T 3pk0_A           84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTF  124 (262)
T ss_dssp             HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            99999999999999874  4567899999999999999876

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.94  E-value=9.4e-27  Score=165.92  Aligned_cols=119  Identities=28%  Similarity=0.300  Sum_probs=104.1

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ..++++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++++|++|++++++++++
T Consensus        21 ~~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~   98 (283)
T 3v8b_A           21 QSMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA--GGQAIALEADVSDELQMRNAVRD   98 (283)
T ss_dssp             ------CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             hhhcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            3455688999999999999999999999999999999999998888888877654  56799999999999999999999


Q ss_pred             HHhcCCCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+++|++|+||||||+.   .+..+.+.++|++++++|+.|++
T Consensus        99 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  142 (283)
T 3v8b_A           99 LVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTF  142 (283)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             HHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999999985   35568899999999999999876

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.94  E-value=1.6e-26  Score=162.91  Aligned_cols=132  Identities=20%  Similarity=0.302  Sum_probs=111.8

Q ss_pred             CCCCCCCchhhhccCCCCCCCEEEEeCCC-CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEec
Q 042455            5 SEFSASSTAEEVTQGIDAAGVTAIVTGAS-SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD   83 (138)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~k~~litG~~-~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D   83 (138)
                      ..++.++.+..+..+.++++|+++||||+ +|||+++|++|+++|++|++++|+.+.+++...++.... +.++.++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D   81 (266)
T 3o38_A            3 GSMNLSEAPKEIDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCD   81 (266)
T ss_dssp             ---CTTSCCCCCCCCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECC
T ss_pred             CCcccccCccccccccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeC
Confidence            33444444444555667899999999997 599999999999999999999999998888888876553 4689999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           84 LSSLASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|.++++++++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        82 l~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  137 (266)
T 3o38_A           82 VTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVM  137 (266)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999864  3457899999999999999875

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.94  E-value=2.5e-26  Score=161.66  Aligned_cols=118  Identities=11%  Similarity=0.126  Sum_probs=104.3

Q ss_pred             CCCCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      |++++||++|||||++  |||+++|+.|+++|++|++++|+++..++..+.+.+.. +.++.++++|++|++++++++++
T Consensus         1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHH
Confidence            4679999999999875  99999999999999999999999988888777776553 46789999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+++|++|+||||||+..      +..+.+.++|...+++|+.+++
T Consensus        80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~  126 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLT  126 (256)
T ss_dssp             HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999763      2346788999999999998765

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.94  E-value=7e-27  Score=164.96  Aligned_cols=112  Identities=20%  Similarity=0.232  Sum_probs=97.2

Q ss_pred             hhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           15 EVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        15 ~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      +|+..++++||++|||||++|||+++|+.|+++|++|++++|+.++.            ..+..++++|+++++++++++
T Consensus         2 Mm~dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~   69 (261)
T 4h15_A            2 MMIEFLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG------------LPEELFVEADLTTKEGCAIVA   69 (261)
T ss_dssp             CCCCCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT------------SCTTTEEECCTTSHHHHHHHH
T ss_pred             cchhccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC------------CCcEEEEEcCCCCHHHHHHHH
Confidence            34555689999999999999999999999999999999999976431            123347899999999999999


Q ss_pred             HHHHhcCCCccEEEECcccCC----CCCccCHHHHHHHhhhccccccC
Q 042455           95 SDFTARALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++.+++|+||+||||||+..    +..+.+.|+|+++|++|+.|+|+
T Consensus        70 ~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~  117 (261)
T 4h15_A           70 EATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVR  117 (261)
T ss_dssp             HHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHH
Confidence            999999999999999999753    34578999999999999999863

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.94  E-value=1.6e-26  Score=161.84  Aligned_cols=116  Identities=26%  Similarity=0.325  Sum_probs=103.5

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ..++++++|+++||||++|||+++|++|+++|++|++++|+++.+++....+.     .....+++|++|++++++++++
T Consensus         2 ~~~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~   76 (248)
T 3op4_A            2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPESIEAVLKA   76 (248)
T ss_dssp             CCTTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999888887776663     3467899999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        77 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  119 (248)
T 3op4_A           77 ITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIF  119 (248)
T ss_dssp             HHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999874  3457899999999999999876

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.94  E-value=2.9e-26  Score=160.89  Aligned_cols=115  Identities=21%  Similarity=0.235  Sum_probs=104.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAADA   80 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999988888766  57899999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      + +++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        81 ~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  119 (252)
T 3h7a_A           81 H-APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGF  119 (252)
T ss_dssp             H-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             h-CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9 99999999999874  4457899999999999999876

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.94  E-value=3.4e-27  Score=164.85  Aligned_cols=113  Identities=22%  Similarity=0.328  Sum_probs=96.1

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +..++++||+++||||++|||+++|+.|+++|++|++++|+..  ++..+.+...  +.++..+++|++|+++++++++ 
T Consensus         2 ~n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~-   76 (247)
T 4hp8_A            2 KNPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKD--GGNASALLIDFADPLAAKDSFT-   76 (247)
T ss_dssp             -CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT--TCCEEEEECCTTSTTTTTTSST-
T ss_pred             cCCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHH-
Confidence            3456899999999999999999999999999999999999864  3444555554  6789999999999998877663 


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                          +++||+||||||+..  +..+++.++|++++++|+.|+|+
T Consensus        77 ----~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~  116 (247)
T 4hp8_A           77 ----DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFF  116 (247)
T ss_dssp             ----TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             ----hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHH
Confidence                489999999999874  56689999999999999999874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.94  E-value=2.3e-26  Score=162.90  Aligned_cols=117  Identities=26%  Similarity=0.286  Sum_probs=105.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ...+++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.++++++++++.
T Consensus        23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~  100 (270)
T 3ftp_A           23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--GLEGRGAVLNVNDATAVDALVESTL  100 (270)
T ss_dssp             CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEEeCCCHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999998888887777665  5678899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  141 (270)
T 3ftp_A          101 KEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVF  141 (270)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            99999999999999874  4557899999999999999876

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.94  E-value=6.8e-27  Score=162.98  Aligned_cols=105  Identities=25%  Similarity=0.303  Sum_probs=93.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++||++|||||++|||+++|+.|+++|++|++++|+.+.+++       . .+.++..+++|++|+++++++++    ++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~-------~-~~~~~~~~~~Dv~~~~~v~~~~~----~~   76 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA-------P-RHPRIRREELDITDSQRLQRLFE----AL   76 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS-------C-CCTTEEEEECCTTCHHHHHHHHH----HC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh-------h-hcCCeEEEEecCCCHHHHHHHHH----hc
Confidence            589999999999999999999999999999999999876542       1 14678899999999999888775    47


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhccccccC
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      |+||+||||||+..+..+.+.++|+++|++|+.|+|+
T Consensus        77 g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~  113 (242)
T 4b79_A           77 PRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAML  113 (242)
T ss_dssp             SCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHH
T ss_pred             CCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHH
Confidence            9999999999998877789999999999999999873

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.94  E-value=3.1e-26  Score=161.04  Aligned_cols=118  Identities=25%  Similarity=0.335  Sum_probs=106.7

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.+++++|+++||||++|||+++|++|+++|++|++++|+.+..++...++...  +.++.++.+|++|+++++++++++
T Consensus         6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   83 (256)
T 3gaf_A            6 SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA--GGKAIGLECNVTDEQHREAVIKAA   83 (256)
T ss_dssp             CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999998888888877665  567899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||...+ ..+.+.++|++++++|+.|++
T Consensus        84 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~  124 (256)
T 3gaf_A           84 LDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLF  124 (256)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHH
Confidence            9999999999999998742 237899999999999999876

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.94  E-value=3.8e-26  Score=162.24  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=106.1

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++.++++|++|||||++|||+++|+.|+++|++|++++|+.+..++...++.... +.++.++.+|++|+++++++++++
T Consensus        21 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~   99 (277)
T 4fc7_A           21 CPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQA   99 (277)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            4446899999999999999999999999999999999999988888777775433 467899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus       100 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  141 (277)
T 4fc7_A          100 LKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTF  141 (277)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999999763  4557899999999999999876

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.94  E-value=3.2e-26  Score=161.83  Aligned_cols=114  Identities=24%  Similarity=0.306  Sum_probs=104.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.+++
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA--GGTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999988888888765  5688999999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~  117 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVL  117 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999874  4557899999999999999876

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.94  E-value=5.6e-26  Score=160.32  Aligned_cols=116  Identities=15%  Similarity=0.167  Sum_probs=105.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ..+++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++++|++|+++++++++++.+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT--GRRALSVGTDITDDAQVAHLVDETMK   84 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999888888888765  57799999999999999999999999


Q ss_pred             cCCCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||..   .+..+.+.++|++++++|+.|++
T Consensus        85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  125 (264)
T 3ucx_A           85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGAL  125 (264)
T ss_dssp             HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHH
Confidence            999999999999975   24557899999999999999876

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.94  E-value=1.2e-26  Score=164.00  Aligned_cols=119  Identities=23%  Similarity=0.316  Sum_probs=106.8

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .++++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++.... +.++.++++|++|+++++++++++
T Consensus        14 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~   92 (266)
T 4egf_A           14 GVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRA   92 (266)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999988888877776532 567999999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        93 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  134 (266)
T 4egf_A           93 AEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPA  134 (266)
T ss_dssp             HHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999999874  4457899999999999999876

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.94  E-value=3.3e-26  Score=162.03  Aligned_cols=117  Identities=26%  Similarity=0.329  Sum_probs=102.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .+++++|++|||||++|||+++|+.|+++|++|++++| +.+..++....+...  +.++.++.+|++|+++++++++++
T Consensus        23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~v~~~~~~~  100 (269)
T 4dmm_A           23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA--GGEAFAVKADVSQESEVEALFAAV  100 (269)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            35688999999999999999999999999999999988 555666666666654  567899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       101 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  142 (269)
T 4dmm_A          101 IERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVF  142 (269)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999999999874  3457899999999999999876

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.94  E-value=3.3e-26  Score=162.67  Aligned_cols=119  Identities=22%  Similarity=0.275  Sum_probs=103.0

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-------------CcchhHHHHHHHHhcCCCCeeEEEEec
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-------------NMAAGRDVKVAIVMQNPAAKVDVMELD   83 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-------------~~~~~~~~~~~l~~~~~~~~~~~~~~D   83 (138)
                      ..+.++++|+++||||++|||+++|++|+++|++|++++|             +.+.+++....+...  +.++.++.+|
T Consensus         8 ~~~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D   85 (280)
T 3pgx_A            8 GQAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLD   85 (280)
T ss_dssp             ---CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred             ccccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcC
Confidence            3455789999999999999999999999999999999998             455666666666554  5778999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           84 LSSLASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+++++++++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        86 v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  141 (280)
T 3pgx_A           86 VRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTW  141 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHH
Confidence            99999999999999999999999999999874  4457899999999999999876

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.94  E-value=2.6e-26  Score=162.34  Aligned_cols=115  Identities=23%  Similarity=0.298  Sum_probs=102.1

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .++++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++     +.++.++.+|++|+++++++++++
T Consensus        21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   95 (266)
T 3grp_A           21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRKSIKQLAEVA   95 (266)
T ss_dssp             CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHHHHHHHHHHH
Confidence            445789999999999999999999999999999999999988877766554     567899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        96 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  137 (266)
T 3grp_A           96 EREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAAS  137 (266)
T ss_dssp             HHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            999999999999999874  4457889999999999999875

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.94  E-value=3.9e-26  Score=162.37  Aligned_cols=115  Identities=30%  Similarity=0.314  Sum_probs=102.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.++
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--GHDVDGSSCDVTSTDEVHAAVAAAVER   98 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999888888888765  567999999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        99 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  137 (279)
T 3sju_A           99 FGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVF  137 (279)
T ss_dssp             HCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999874  4457899999999999999876

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.94  E-value=5.6e-26  Score=161.50  Aligned_cols=118  Identities=28%  Similarity=0.347  Sum_probs=103.5

Q ss_pred             hhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           15 EVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        15 ~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .+.+.+++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++     +.++.++++|++|++++++++
T Consensus        18 ~~~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~   92 (277)
T 4dqx_A           18 LYFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVRVDVSSAKDAESMV   92 (277)
T ss_dssp             ----CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHH
T ss_pred             cccccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHH
Confidence            334556789999999999999999999999999999999999988877766654     567889999999999999999


Q ss_pred             HHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           95 SDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        93 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  137 (277)
T 4dqx_A           93 EKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIF  137 (277)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999999999864  4557899999999999999876

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=3.7e-26  Score=160.20  Aligned_cols=118  Identities=25%  Similarity=0.304  Sum_probs=104.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCC-CeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPA-AKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++..+++....++ .++.++.+|++|.++++++++++.
T Consensus         3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (250)
T 3nyw_A            3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH   82 (250)
T ss_dssp             --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999988888888766433 678999999999999999999999


Q ss_pred             hcCCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+... ..+.+.++|++++++|+.|++
T Consensus        83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~  122 (250)
T 3nyw_A           83 QKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQY  122 (250)
T ss_dssp             HHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHH
T ss_pred             HhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999998742 237788999999999999876

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.94  E-value=4e-26  Score=160.49  Aligned_cols=115  Identities=21%  Similarity=0.263  Sum_probs=104.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +|++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.++
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF--PGQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS--TTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999888887777544  567899999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~  119 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTF  119 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999763  4557899999999999999876

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.94  E-value=7.2e-26  Score=159.29  Aligned_cols=114  Identities=23%  Similarity=0.353  Sum_probs=102.6

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +.++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++++|++|+++++++++++.
T Consensus         3 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            3 MKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             -CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            44688999999999999999999999999999999999988887777666     4567899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  118 (259)
T 4e6p_A           78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTL  118 (259)
T ss_dssp             HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999864  4557899999999999999876

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.94  E-value=9.3e-26  Score=160.31  Aligned_cols=117  Identities=21%  Similarity=0.284  Sum_probs=101.6

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC------------cchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN------------MAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      +.++++|+++||||++|||+++|+.|+++|++|++++|+            .+.+++....+...  +.++.++++|++|
T Consensus         5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~   82 (281)
T 3s55_A            5 MADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKD   82 (281)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTC
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCC
Confidence            446889999999999999999999999999999999997            33445555555544  5679999999999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           87 LASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++++++++.+++|++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  135 (281)
T 3s55_A           83 RAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTF  135 (281)
T ss_dssp             HHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999874  4567899999999999999876

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.93  E-value=7e-26  Score=162.64  Aligned_cols=115  Identities=21%  Similarity=0.278  Sum_probs=105.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.++++++++++.++
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            488999999999999999999999999999999999999988888888765  567899999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       106 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  144 (301)
T 3tjr_A          106 LGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSI  144 (301)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHH
Confidence            999999999999874  4457899999999999999875

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.93  E-value=7.9e-26  Score=161.22  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=103.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-------hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-------AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRK   92 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-------~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~   92 (138)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+       .+++...++...  +.++.++++|++|++++++
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~   82 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAA   82 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHH
Confidence            4688999999999999999999999999999999999876       455666666555  5789999999999999999


Q ss_pred             HHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           93 FASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        93 ~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        83 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  129 (285)
T 3sc4_A           83 AVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTY  129 (285)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999999999874  4567899999999999999876

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.93  E-value=4.3e-26  Score=161.73  Aligned_cols=114  Identities=26%  Similarity=0.276  Sum_probs=99.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +.++.+|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|+++++++++++.
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~   97 (272)
T 4dyv_A           23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCVPTDVTDPDSVRALFTATV   97 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEEEECCTTSHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEecCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988888777666     4568899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        98 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  139 (272)
T 4dyv_A           98 EKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF  139 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHH
Confidence            99999999999999863   3457899999999999999876

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.93  E-value=7.1e-26  Score=159.87  Aligned_cols=120  Identities=24%  Similarity=0.302  Sum_probs=104.8

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.+++++|+++||||++|||+++|+.|+++|++|++++|+++.+++...++....++.++.++.+|++|+++++++++++
T Consensus         7 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   86 (267)
T 1iy8_A            7 PTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT   86 (267)
T ss_dssp             ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            34468899999999999999999999999999999999998888877777765544567899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  129 (267)
T 1iy8_A           87 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVF  129 (267)
T ss_dssp             HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999999863   3447899999999999999876

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.93  E-value=1.1e-25  Score=161.43  Aligned_cols=118  Identities=17%  Similarity=0.199  Sum_probs=103.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC------------cchhHHHHHHHHhcCCCCeeEEEEecCC
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN------------MAAGRDVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      +..++++|++|||||++|||+++|+.|+++|++|++++|+            .+.+++...++...  +.++.++++|++
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   99 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRRIIASQVDVR   99 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc--CCceEEEECCCC
Confidence            3446889999999999999999999999999999999987            45566666666554  567999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           86 SLASVRKFASDFTARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+++++++++++.++++++|+||||||+..   +..+.+.++|++++++|+.|+|
T Consensus       100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  154 (299)
T 3t7c_A          100 DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAW  154 (299)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999874   2557899999999999999876

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.93  E-value=8.1e-26  Score=160.21  Aligned_cols=121  Identities=26%  Similarity=0.311  Sum_probs=105.1

Q ss_pred             hhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           15 EVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        15 ~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      .|+..+++++|++|||||++|||+++|++|+++|++|++++++. +..++...++...  +.++.++.+|++|+++++++
T Consensus        22 ~mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~   99 (271)
T 3v2g_A           22 SMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA--GGRAVAIRADNRDAEAIEQA   99 (271)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred             hhccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHH
Confidence            34455678999999999999999999999999999999987664 5566666666654  56789999999999999999


Q ss_pred             HHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           94 ASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++.+++|++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       100 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  145 (271)
T 3v2g_A          100 IRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPF  145 (271)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999999874  4557899999999999999876

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.93  E-value=3.6e-26  Score=162.76  Aligned_cols=116  Identities=28%  Similarity=0.275  Sum_probs=105.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (280)
T 3tox_A            4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVR   81 (280)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999999999999999999999888888777554  56789999999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        82 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  122 (280)
T 3tox_A           82 RFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAF  122 (280)
T ss_dssp             HHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999763   4457899999999999999876

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.93  E-value=1.3e-25  Score=159.71  Aligned_cols=117  Identities=21%  Similarity=0.258  Sum_probs=102.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC------------cchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN------------MAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      +.++++|++|||||++|||+++|++|+++|++|++++|+            .+.+++...++...  +.++.++.+|++|
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   82 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRD   82 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCC
Confidence            446889999999999999999999999999999999997            44555555555544  5789999999999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           87 LASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++++++.++++++|+||||||+.....+.+.++|++++++|+.|++
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~  133 (287)
T 3pxx_A           83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVI  133 (287)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhH
Confidence            999999999999999999999999998754455788999999999999876

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.93  E-value=1.1e-25  Score=158.57  Aligned_cols=119  Identities=28%  Similarity=0.388  Sum_probs=105.7

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .++.++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.+++++++++
T Consensus        22 ~~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~   99 (262)
T 3rkr_A           22 KHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAAFATG   99 (262)
T ss_dssp             ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHH
T ss_pred             chhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHH
Confidence            3455688999999999999999999999999999999999999988888887765  56799999999999999999999


Q ss_pred             HHhcCCCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+.++++|+||||||+.   ++..+.+.++|++++++|+.|++
T Consensus       100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~  143 (262)
T 3rkr_A          100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPY  143 (262)
T ss_dssp             HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999999999984   24557899999999999999875

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.3e-25  Score=159.17  Aligned_cols=116  Identities=22%  Similarity=0.252  Sum_probs=102.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-------hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-------GRDVKVAIVMQNPAAKVDVMELDLSSLASVRK   92 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~   92 (138)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+.       +++....+...  +.++.++++|++|++++++
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~   79 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRA   79 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHH
Confidence            46889999999999999999999999999999999998753       45555555554  5789999999999999999


Q ss_pred             HHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           93 FASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        93 ~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        80 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~  126 (274)
T 3e03_A           80 AVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSF  126 (274)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHH
Confidence            99999999999999999999874  4457899999999999999876

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.93  E-value=1.5e-25  Score=156.67  Aligned_cols=115  Identities=33%  Similarity=0.385  Sum_probs=103.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.++
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999988888877777654  467889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  120 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLM  120 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999863  4557899999999999999876

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.93  E-value=6.2e-26  Score=158.74  Aligned_cols=112  Identities=30%  Similarity=0.385  Sum_probs=102.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++|+.|+++|++|++++|+.+.+++...++     +.++.++++|++|+++++++++++.++
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999998887777665     567889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  116 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTF  116 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999874  4457899999999999999876

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.93  E-value=1e-25  Score=160.16  Aligned_cols=120  Identities=18%  Similarity=0.153  Sum_probs=105.2

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC-CCeeEEEEecCCCHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP-AAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +.+++++|+++||||++|||+++|++|+++|++|++++|+++.+++...++..... +.++.++.+|++|++++++++++
T Consensus         5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   84 (281)
T 3svt_A            5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDA   84 (281)
T ss_dssp             ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999988888888876532 23789999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||...   +..+.+.++|++++++|+.|++
T Consensus        85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  128 (281)
T 3svt_A           85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTM  128 (281)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999742   4557899999999999999876

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.93  E-value=1.1e-25  Score=160.17  Aligned_cols=119  Identities=21%  Similarity=0.210  Sum_probs=102.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+.++++|++|||||++|||+++|++|+++|++|++++| +.+..++...++.... +.++.++.+|++|++++++++++
T Consensus        19 ~~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~   97 (281)
T 3v2h_A           19 YFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAM   97 (281)
T ss_dssp             ---CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHH
T ss_pred             hhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHH
Confidence            455788999999999999999999999999999999999 5556666666665442 46789999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        98 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  140 (281)
T 3v2h_A           98 VADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSF  140 (281)
T ss_dssp             HHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999864  4457899999999999999876

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.93  E-value=1.2e-25  Score=159.44  Aligned_cols=117  Identities=19%  Similarity=0.238  Sum_probs=102.2

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-------------CcchhHHHHHHHHhcCCCCeeEEEEecCC
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-------------NMAAGRDVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-------------~~~~~~~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      +.++++|++|||||++|||+++|+.|+++|++|++++|             +.+.+++....+...  +.++.++.+|++
T Consensus         6 ~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~   83 (277)
T 3tsc_A            6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTR   83 (277)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred             ccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence            34688999999999999999999999999999999998             455566666666554  567999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           86 SLASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+++++++++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  137 (277)
T 3tsc_A           84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTW  137 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999999874  3447899999999999999876

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.93  E-value=2.1e-25  Score=156.92  Aligned_cols=118  Identities=29%  Similarity=0.302  Sum_probs=105.0

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..+++++|+++||||++|||++++++|+++|++|++++|+++.+++...++...  +.++.++.+|++|+++++++++++
T Consensus         3 ~~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~   80 (260)
T 2ae2_A            3 GRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTV   80 (260)
T ss_dssp             CTTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999988887777777654  567889999999999999999999


Q ss_pred             HhcC-CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARA-LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~-~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+++ +++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        81 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  123 (260)
T 2ae2_A           81 ANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAY  123 (260)
T ss_dssp             HHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999 89999999999864  3457899999999999999875

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.93  E-value=1.1e-25  Score=159.20  Aligned_cols=119  Identities=21%  Similarity=0.279  Sum_probs=103.7

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      .++.++++|++|||||++|||+++|++|+++|++|++++++ .+..++...++...  +.++.++.+|++|+++++++++
T Consensus        11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~   88 (270)
T 3is3_A           11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL--GSDAIAIKADIRQVPEIVKLFD   88 (270)
T ss_dssp             CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHH
T ss_pred             cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHH
Confidence            34456899999999999999999999999999999998765 44566666666654  5678999999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  132 (270)
T 3is3_A           89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQF  132 (270)
T ss_dssp             HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999999874  4457899999999999999876

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.93  E-value=1.5e-25  Score=162.10  Aligned_cols=119  Identities=28%  Similarity=0.302  Sum_probs=107.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +.++++|++|||||++|||+++|++|+++|++|++++|+.+++++....+....++.++.++.+|++|.++++++++++.
T Consensus         3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999988888888766434489999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  123 (319)
T 3ioy_A           83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVV  123 (319)
T ss_dssp             HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999863  4557899999999999999876

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.93  E-value=7.1e-26  Score=159.70  Aligned_cols=119  Identities=22%  Similarity=0.219  Sum_probs=104.0

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc---chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM---AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      ..++++++|++|||||++|||+++|++|+++|++|++++|..   +.+++...++...  +.++.++++|++|+++++++
T Consensus         4 ~~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~   81 (262)
T 3ksu_A            4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKL   81 (262)
T ss_dssp             CCCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHH
T ss_pred             ccccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHH
Confidence            455678999999999999999999999999999999987753   4556666666654  57899999999999999999


Q ss_pred             HHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           94 ASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        82 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  127 (262)
T 3ksu_A           82 FDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAY  127 (262)
T ss_dssp             HHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999999874  4457899999999999999876

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.93  E-value=8.6e-26  Score=158.73  Aligned_cols=113  Identities=24%  Similarity=0.359  Sum_probs=102.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++||||++|||+++|++|+++|++|++++|+++.+++..+++     +.++.++.+|++|+++++++++++.+
T Consensus         4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (255)
T 4eso_A            4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQ   78 (255)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHH
Confidence            3588999999999999999999999999999999999988887776665     46789999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+..  +..+.+.++|++.+++|+.|++
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  118 (255)
T 4eso_A           79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAF  118 (255)
T ss_dssp             HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999999999874  4557899999999999999876

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.93  E-value=8.2e-26  Score=157.12  Aligned_cols=111  Identities=21%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +..+.++.+|++|+++++++++++.+++
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999998888777666     2358899999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  113 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTI  113 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHH
Confidence            99999999999863  4557899999999999999876

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.93  E-value=1.1e-25  Score=160.08  Aligned_cols=113  Identities=28%  Similarity=0.348  Sum_probs=101.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++     +.++.++++|++|+++++++++++.+
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDACVA   99 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999988887777666     56788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       100 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  139 (277)
T 3gvc_A          100 AFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAW  139 (277)
T ss_dssp             HHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999874  4557899999999999999876

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=1.7e-25  Score=157.51  Aligned_cols=117  Identities=18%  Similarity=0.139  Sum_probs=102.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++++++|+++||||++|||+++|++|+++|++|+++ .++.+..++...++...  +.++.++.+|++|+++++++++++
T Consensus         3 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   80 (259)
T 3edm_A            3 LQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL--GRSALAIKADLTNAAEVEAAISAA   80 (259)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT--TSCCEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence            346889999999999999999999999999999998 55666666666766654  567899999999999999999999


Q ss_pred             HhcCCCccEEEECcccC---CCCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~---~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+++|++|+||||||..   .+..+.+.++|++++++|+.|++
T Consensus        81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  123 (259)
T 3edm_A           81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLF  123 (259)
T ss_dssp             HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHH
Confidence            99999999999999976   24557899999999999999876

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.93  E-value=8.3e-26  Score=160.91  Aligned_cols=117  Identities=22%  Similarity=0.245  Sum_probs=100.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++.... +..+.++++|++|+++++++++++.+
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  107 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-GNIVRAVVCDVGDPDQVAALFAAVRA  107 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999988888877776542 34468899999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus       108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~  148 (281)
T 4dry_A          108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAF  148 (281)
T ss_dssp             HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999863   3457899999999999999875

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.93  E-value=2e-25  Score=163.19  Aligned_cols=118  Identities=19%  Similarity=0.241  Sum_probs=104.3

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-------hHHHHHHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-------GRDVKVAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-------~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      ...++++|++|||||++|||+++|++|+++|++|++++|+.++       +++...++...  +.++.++.+|++|++++
T Consensus        39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v  116 (346)
T 3kvo_A           39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV--GGKALPCIVDVRDEQQI  116 (346)
T ss_dssp             CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT--TCEEEEEECCTTCHHHH
T ss_pred             cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHH
Confidence            4456899999999999999999999999999999999998764       45556666554  57899999999999999


Q ss_pred             HHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           91 RKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       117 ~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~  165 (346)
T 3kvo_A          117 SAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTY  165 (346)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999874  4567899999999999999876

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.93  E-value=1.3e-25  Score=160.93  Aligned_cols=121  Identities=21%  Similarity=0.268  Sum_probs=103.4

Q ss_pred             hhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCC---eeEEEEecCCCHHHHH
Q 042455           15 EVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA---KVDVMELDLSSLASVR   91 (138)
Q Consensus        15 ~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~---~~~~~~~D~~~~~~~~   91 (138)
                      ....++++++|+++||||++|||+++|+.|+++|++|++++|+.+++++...++...  +.   ++.++.+|++|+++++
T Consensus        17 ~~~~m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~~Dv~d~~~v~   94 (297)
T 1xhl_A           17 RGSHMARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKA--GVPAEKINAVVADVTEASGQD   94 (297)
T ss_dssp             ------CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEECCTTSHHHHH
T ss_pred             ccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEEecCCCCHHHHH
Confidence            333455688999999999999999999999999999999999998888777777654  33   7889999999999999


Q ss_pred             HHHHHHHhcCCCccEEEECcccCC--C--CCccCHHHHHHHhhhcccccc
Q 042455           92 KFASDFTARALPLNILINKAGICG--T--PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        92 ~~~~~~~~~~~~id~lv~~ag~~~--~--~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++.++++++|+||||||+..  +  ..+.+.++|++++++|+.|++
T Consensus        95 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  144 (297)
T 1xhl_A           95 DIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI  144 (297)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHH
Confidence            999999999999999999999864  3  457899999999999999876

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.93  E-value=2.6e-25  Score=157.91  Aligned_cols=115  Identities=27%  Similarity=0.350  Sum_probs=103.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+++.+++..+++...  +.++.++.+|++|+++++++++++.++
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999988887777777654  457889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  135 (277)
T 2rhc_B           97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVF  135 (277)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999864  3457899999999999999875

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.93  E-value=3e-25  Score=154.83  Aligned_cols=116  Identities=28%  Similarity=0.420  Sum_probs=105.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |++++|+++||||++|||+++|++|+++|++|++++|+++..++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998888887777665  56789999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+..  +..+.+.++|++.+++|+.|++
T Consensus        79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  118 (247)
T 3lyl_A           79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIF  118 (247)
T ss_dssp             TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999874  3457899999999999999875

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.93  E-value=2.5e-25  Score=158.44  Aligned_cols=117  Identities=20%  Similarity=0.208  Sum_probs=102.0

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC----------------cchhHHHHHHHHhcCCCCeeEEEEe
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN----------------MAAGRDVKVAIVMQNPAAKVDVMEL   82 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~----------------~~~~~~~~~~l~~~~~~~~~~~~~~   82 (138)
                      +.++++|+++||||++|||+++|+.|+++|++|++++|+                .+.+++....+...  +.++.++++
T Consensus         6 ~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   83 (286)
T 3uve_A            6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEV   83 (286)
T ss_dssp             CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred             CcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEc
Confidence            346889999999999999999999999999999999987                44555555555544  567999999


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCccEEEECcccCCC---CCccCHHHHHHHhhhcccccc
Q 042455           83 DLSSLASVRKFASDFTARALPLNILINKAGICGT---PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        83 D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++|+++++++++++.++++++|+||||||+...   ..+.+.++|+++|++|+.|++
T Consensus        84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  141 (286)
T 3uve_A           84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVW  141 (286)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999999999998642   447899999999999999876

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.93  E-value=1e-25  Score=158.22  Aligned_cols=113  Identities=28%  Similarity=0.285  Sum_probs=92.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+..++...++     +.++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   77 (257)
T 3tpc_A            3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAKQ   77 (257)
T ss_dssp             -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999998877766555     45688999999999999999999999


Q ss_pred             cCCCccEEEECcccCCC--C----CccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT--P----FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~--~----~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||....  .    .+.+.++|++++++|+.|++
T Consensus        78 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  121 (257)
T 3tpc_A           78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF  121 (257)
T ss_dssp             HHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHH
Confidence            99999999999998742  1    25788999999999999876

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.93  E-value=2.1e-25  Score=157.65  Aligned_cols=120  Identities=23%  Similarity=0.351  Sum_probs=103.1

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+..++++|+++||||++|||+++++.|+++|++|++++|+.+.+++...++.... +.++.++.+|++|++++++++++
T Consensus        14 ~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~   92 (267)
T 1vl8_A           14 KEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEA   92 (267)
T ss_dssp             ---CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHH
Confidence            34556889999999999999999999999999999999999888777766662222 45688899999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        93 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  135 (267)
T 1vl8_A           93 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTY  135 (267)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999864  3457899999999999999875

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.93  E-value=1.5e-25  Score=159.13  Aligned_cols=119  Identities=27%  Similarity=0.310  Sum_probs=104.5

Q ss_pred             hccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           16 VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        16 ~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      +.+++++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...  + ++.++.+|++|+++++++++
T Consensus        21 ~~~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~-~~~~~~~Dv~d~~~v~~~~~   97 (276)
T 2b4q_A           21 MHPYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY--G-DCQAIPADLSSEAGARRLAQ   97 (276)
T ss_dssp             CCTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS--S-CEEECCCCTTSHHHHHHHHH
T ss_pred             cccccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--C-ceEEEEeeCCCHHHHHHHHH
Confidence            34455688999999999999999999999999999999999988877777666432  3 68889999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.+.++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  141 (276)
T 2b4q_A           98 ALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVF  141 (276)
T ss_dssp             HHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHH
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999999864  4457889999999999999875

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.93  E-value=1.4e-25  Score=158.74  Aligned_cols=117  Identities=30%  Similarity=0.325  Sum_probs=98.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .+++++|++|||||++|||+++|++|+++|++|++++ |+.+..++...++...  +.++.++.+|++|+++++++++++
T Consensus        22 ~m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~   99 (267)
T 3u5t_A           22 SMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA--GGKALTAQADVSDPAAVRRLFATA   99 (267)
T ss_dssp             -----CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHH
Confidence            3456899999999999999999999999999998874 4555666666666554  567899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~  141 (267)
T 3u5t_A          100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTF  141 (267)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHH
Confidence            999999999999999874  4457899999999999999876

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.93  E-value=1.6e-25  Score=162.09  Aligned_cols=118  Identities=22%  Similarity=0.246  Sum_probs=104.9

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC----------cchhHHHHHHHHhcCCCCeeEEEEecCCCH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN----------MAAGRDVKVAIVMQNPAAKVDVMELDLSSL   87 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~----------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~   87 (138)
                      ++.++++|++|||||++|||+++|+.|+++|++|++++|+          .+..++...++...  +.++.++.+|++|.
T Consensus        21 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~   98 (322)
T 3qlj_A           21 SMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA--GGEAVADGSNVADW   98 (322)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT--TCEEEEECCCTTSH
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc--CCcEEEEECCCCCH
Confidence            3446889999999999999999999999999999999998          66777777777665  56899999999999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           88 ASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        99 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  150 (322)
T 3qlj_A           99 DQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHF  150 (322)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999999874  3457899999999999999875

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.93  E-value=3.4e-25  Score=155.36  Aligned_cols=117  Identities=24%  Similarity=0.239  Sum_probs=104.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC--CCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL--SSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~   97 (138)
                      ..+++|+++||||++|||+++|+.|+++|++|++++|+.+.+++...++.... +.++.++.+|+  +|.++++++++++
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCCHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999988888877776543 34688899999  9999999999999


Q ss_pred             HhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  129 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATF  129 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHH
Confidence            999999999999999853   4567899999999999999876

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.93  E-value=1.3e-25  Score=158.26  Aligned_cols=124  Identities=23%  Similarity=0.258  Sum_probs=106.3

Q ss_pred             hhhhccCCCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchh-HHHHHHHHhcCCCCeeEEEEecCCCHHH
Q 042455           13 AEEVTQGIDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAG-RDVKVAIVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        13 ~~~~~~~~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      ...+.+++++++|+++||||+  +|||+++|++|+++|++|++++|+.+.. ++..+++.... +.++.++++|++|+++
T Consensus         9 ~~~~~~~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~   87 (267)
T 3gdg_A            9 HESLLDQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYES   87 (267)
T ss_dssp             CSSHHHHHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHH
T ss_pred             CcccccccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHH
Confidence            333445567899999999999  9999999999999999999999887654 56666665443 5679999999999999


Q ss_pred             HHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           90 VRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|++
T Consensus        88 v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  137 (267)
T 3gdg_A           88 CEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTF  137 (267)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHH
Confidence            99999999999999999999999874  4457899999999999999876

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.93  E-value=4.7e-25  Score=157.67  Aligned_cols=117  Identities=21%  Similarity=0.269  Sum_probs=100.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|++|||||++|||+++|++|+++|++|++++|+.+...+...++.... +.++.++.+|++|+++++++++++.+
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999998875444333333332 56799999999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||...   +..+.+.++|++++++|+.|++
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  162 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYF  162 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999863   3446799999999999999876

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.93  E-value=2.2e-25  Score=156.89  Aligned_cols=114  Identities=19%  Similarity=0.265  Sum_probs=102.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++|++|||||++|||+++|++|+++|++|+++ +|+.+.+++...++...  +.++.++.+|++|+++++++++++.++
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL--GVKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999886 88888888877777654  567999999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  118 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALL  118 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999763  4557899999999999999876

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.93  E-value=3.2e-25  Score=155.18  Aligned_cols=117  Identities=26%  Similarity=0.338  Sum_probs=105.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.
T Consensus         4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999988888888765  5688999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC-----CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG-----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~-----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+.+     +..+.+.++|++.+++|+.|++
T Consensus        82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  125 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGAL  125 (253)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHH
Confidence            99999999999999842     3457899999999999999875

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.93  E-value=3.1e-25  Score=160.36  Aligned_cols=117  Identities=22%  Similarity=0.276  Sum_probs=101.7

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC------------cchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN------------MAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      +.++++|++|||||++|||+++|+.|+++|++|++++|+            .+.+++....+...  +.++.++.+|++|
T Consensus        41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d  118 (317)
T 3oec_A           41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRD  118 (317)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTC
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence            346889999999999999999999999999999999886            44455555555544  5679999999999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           87 LASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++++++++.+++|++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       119 ~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  171 (317)
T 3oec_A          119 LASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAW  171 (317)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999874  4567899999999999999876

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.93  E-value=5e-25  Score=153.95  Aligned_cols=114  Identities=23%  Similarity=0.297  Sum_probs=101.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++|+++||||++|||+++|++|+++|++|+++++. .+..++..+++...  +.++.++++|++|.++++++++++.++
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK--GVDSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999998874 46667767766655  567899999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++.+++|+.|++
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  118 (246)
T 3osu_A           80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVF  118 (246)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999874  4557899999999999999876

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.93  E-value=1.9e-25  Score=158.59  Aligned_cols=116  Identities=27%  Similarity=0.300  Sum_probs=105.0

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||++|||+++|+.|+++|++|++++|+.+..++...++...  +.++.++.+|++|.++++++++++.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~  105 (275)
T 4imr_A           28 IFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS--GGTAQELAGDLSEAGAGTDLIERAE  105 (275)
T ss_dssp             HHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT--TCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEecCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999988888887765  5778999999999999999999988


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +. +++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus       106 ~~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  145 (275)
T 4imr_A          106 AI-APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTV  145 (275)
T ss_dssp             HH-SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             Hh-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            87 99999999999864  4457899999999999999876

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.2e-26  Score=162.42  Aligned_cols=117  Identities=27%  Similarity=0.369  Sum_probs=107.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC---EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV---HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~---~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++++|++|||||++|||+++|+.|+++|+   +|++++|+.+.+++..+++....++.++.++.+|++|+++++++++++
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  109 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL  109 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            47899999999999999999999999987   999999999999988888877766788999999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus       110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~  152 (287)
T 3rku_A          110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALI  152 (287)
T ss_dssp             CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHH
T ss_pred             HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            999999999999999763   4557899999999999999876

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.93  E-value=8.5e-25  Score=154.92  Aligned_cols=117  Identities=26%  Similarity=0.255  Sum_probs=104.7

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||++|||++++++|+++|++|++++|+++.+++...++...  +.++.++.+|++|+++++++++++.
T Consensus        16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   93 (273)
T 1ae1_A           16 RWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVA   93 (273)
T ss_dssp             CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999988888777777654  4578899999999999999999999


Q ss_pred             hcC-CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARA-LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~-~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+ +++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        94 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  135 (273)
T 1ae1_A           94 HVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY  135 (273)
T ss_dssp             HHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999 99999999999863  4557899999999999999876

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.93  E-value=2e-25  Score=158.84  Aligned_cols=116  Identities=26%  Similarity=0.314  Sum_probs=101.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++.+|++|||||++|||+++|+.|+++|++|++++| +.+..++...++...  +.++.++++|++|+++++++++++.
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~  102 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL--GARVIFLRADLADLSSHQATVDAVV  102 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT--TCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999996 666677777777654  5679999999999999999999999


Q ss_pred             hcCCCccEEEECcccC----CCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGIC----GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+.    .+..+.+.++|++++++|+.|++
T Consensus       103 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  145 (280)
T 4da9_A          103 AEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTV  145 (280)
T ss_dssp             HHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHH
T ss_pred             HHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            9999999999999983    24557899999999999999876

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.93  E-value=2.8e-25  Score=156.57  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=94.4

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +.++++++|++|||||++|||+++|+.|+++|++|++++|+.+...+.....     +  +.++.+|++|++++++++++
T Consensus        20 ~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~Dv~~~~~v~~~~~~   92 (260)
T 3gem_A           20 QGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA-----G--AVALYGDFSCETGIMAFIDL   92 (260)
T ss_dssp             -------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH-----T--CEEEECCTTSHHHHHHHHHH
T ss_pred             ccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc-----C--CeEEECCCCCHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999987764433332     2  67889999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC-CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG-TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||... ...+.+.++|++++++|+.|++
T Consensus        93 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~  134 (260)
T 3gem_A           93 LKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPY  134 (260)
T ss_dssp             HHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHH
T ss_pred             HHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999874 2356788999999999999876

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.93  E-value=3.7e-25  Score=156.66  Aligned_cols=114  Identities=27%  Similarity=0.288  Sum_probs=102.2

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+++.+++...++     +.++.++.+|++|+++++++++++.
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (271)
T 3tzq_B            6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLTNEVSVRALIDFTI   80 (271)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCCeEEEECCCCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999998888777666     4568889999999999999999999


Q ss_pred             hcCCCccEEEECcccCCC----CCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGT----PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~----~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..+    ..+.+.++|++++++|+.|++
T Consensus        81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  123 (271)
T 3tzq_B           81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTM  123 (271)
T ss_dssp             HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHH
Confidence            999999999999998632    337899999999999999876

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.93  E-value=3.4e-25  Score=156.61  Aligned_cols=123  Identities=23%  Similarity=0.250  Sum_probs=98.6

Q ss_pred             hhhhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHH
Q 042455           13 AEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVR   91 (138)
Q Consensus        13 ~~~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~   91 (138)
                      +....|..++.+|+++||||++|||+++|++|+++|++|++++ ++.+..++....+...  +.++.++.+|++|.++++
T Consensus        14 ~~~~~p~~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~   91 (269)
T 3gk3_A           14 AQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA--GRDFKAYAVDVADFESCE   91 (269)
T ss_dssp             ----------CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTT--TCCCEEEECCTTCHHHHH
T ss_pred             cCcCCchhhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHH
Confidence            3344455567899999999999999999999999999999998 4545555555555443  567999999999999999


Q ss_pred             HHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           92 KFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        92 ~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        92 ~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~  139 (269)
T 3gk3_A           92 RCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMF  139 (269)
T ss_dssp             HHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999999999999874  4557899999999999999875

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.93  E-value=5.7e-25  Score=155.98  Aligned_cols=115  Identities=19%  Similarity=0.176  Sum_probs=99.4

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC------------cchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN------------MAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      ..++++|++|||||++|||+++|+.|+++|++|++++|+            .+.+++....+...  +.++.++++|++|
T Consensus         8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   85 (278)
T 3sx2_A            8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRD   85 (278)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTC
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCC
Confidence            456889999999999999999999999999999999987            44555555555554  5679999999999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           87 LASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++++++++.++++++|+||||||+....  .+.++|++++++|+.|++
T Consensus        86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~--~~~~~~~~~~~~N~~g~~  134 (278)
T 3sx2_A           86 RESLSAALQAGLDELGRLDIVVANAGIAPMS--AGDDGWHDVIDVNLTGVY  134 (278)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCS--STHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCC--CCHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999986432  268999999999999876

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.93  E-value=5.1e-25  Score=155.18  Aligned_cols=115  Identities=23%  Similarity=0.248  Sum_probs=103.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999988888777777654  467889999999999999999999999


Q ss_pred             CCCccEEEECcccC-C--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGIC-G--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~-~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||.. .  +..+.+.++|++++++|+.|++
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  121 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAF  121 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHH
Confidence            99999999999976 2  4457899999999999999876

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.92  E-value=6.1e-25  Score=154.71  Aligned_cols=117  Identities=20%  Similarity=0.306  Sum_probs=103.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||+++++.|+++|++|++++|+.+++++...++.... +.++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRS   81 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999888777766665432 34688899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  121 (263)
T 3ai3_A           82 SFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAV  121 (263)
T ss_dssp             HHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999863  4557899999999999999875

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.92  E-value=4e-25  Score=157.63  Aligned_cols=130  Identities=19%  Similarity=0.195  Sum_probs=99.7

Q ss_pred             CCCCCchhhhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCC
Q 042455            7 FSASSTAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      .+....+....+..++++|+++||||++|||+++|+.|+++|++|++++|+. +.+++...++.... +.++.++.+|++
T Consensus         6 ~~~~~~~~~~~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~   84 (288)
T 2x9g_A            6 HHHHHSSGLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-SNTAVVCQADLT   84 (288)
T ss_dssp             ----------------CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCS
T ss_pred             cccccccccCCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-CCceEEEEeecC
Confidence            3334444445556678999999999999999999999999999999999998 77777777765232 467899999999


Q ss_pred             C----HHHHHHHHHHHHhcCCCccEEEECcccCC--CC-----Cc-----cCHHHHHHHhhhcccccc
Q 042455           86 S----LASVRKFASDFTARALPLNILINKAGICG--TP-----FM-----LSKDNIELHFATNHLGAF  137 (138)
Q Consensus        86 ~----~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~-----~~-----~~~~~~~~~~~~n~~g~~  137 (138)
                      |    +++++++++++.+.++++|+||||||+..  +.     .+     .+.++|++++++|+.|++
T Consensus        85 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  152 (288)
T 2x9g_A           85 NSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPF  152 (288)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHH
T ss_pred             CccCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHH
Confidence            9    99999999999999999999999999863  33     44     778999999999999875

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.92  E-value=7.4e-25  Score=156.96  Aligned_cols=122  Identities=11%  Similarity=0.095  Sum_probs=101.5

Q ss_pred             hhhhccCCCCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           13 AEEVTQGIDAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        13 ~~~~~~~~~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      +..|.+++++++|++|||||++  |||+++|+.|+++|++|++++|+++..+.........   ..+.++++|++|++++
T Consensus        19 p~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v   95 (296)
T 3k31_A           19 PGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL---GVKLTVPCDVSDAESV   95 (296)
T ss_dssp             --CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH---TCCEEEECCTTCHHHH
T ss_pred             CccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEcCCCCHHHH
Confidence            3345566778999999999986  9999999999999999999999976544433333222   2368899999999999


Q ss_pred             HHHHHHHHhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           91 RKFASDFTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++++.+++|++|+||||||+..      +..+.+.++|++.+++|+.|++
T Consensus        96 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  148 (296)
T 3k31_A           96 DNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFT  148 (296)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999863      4457899999999999999876

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.92  E-value=3e-25  Score=153.80  Aligned_cols=114  Identities=25%  Similarity=0.348  Sum_probs=101.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++|+++||||++|||+++|++|+++|++|++++|+.+++++...++.... +.++.++.+|++|+++++++++++.++++
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            36899999999999999999999999999999999998888877775333 56799999999999999999999999999


Q ss_pred             CccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  116 (235)
T 3l77_A           80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVW  116 (235)
T ss_dssp             SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHH
Confidence            9999999999874  4557899999999999999876

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.92  E-value=6.2e-25  Score=153.38  Aligned_cols=114  Identities=25%  Similarity=0.319  Sum_probs=101.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      |++|+++||||++|||+++++.|+++|++|++++| +++..++..+++...  +.++.++.+|++|+++++++++++.++
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999 777777777766554  457889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  118 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVF  118 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999864  3457899999999999999875

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.92  E-value=6.6e-25  Score=154.24  Aligned_cols=113  Identities=25%  Similarity=0.365  Sum_probs=102.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|.++++++++++.+
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAADISKEADVDAAVEAALS   79 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999998888777665     46789999999999999999999999


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~  120 (261)
T 3n74_A           80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVY  120 (261)
T ss_dssp             HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999864   2345789999999999999875

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.92  E-value=1.2e-24  Score=153.00  Aligned_cols=117  Identities=20%  Similarity=0.223  Sum_probs=102.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||++++++|+++|++|++++|++++.++..+++....++.++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD   82 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999888877777765432233788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++ +|+||||||+..  +..+.+.++|++.+++|+.|++
T Consensus        83 ~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  121 (260)
T 2z1n_A           83 LGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAV  121 (260)
T ss_dssp             TTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHH
T ss_pred             hcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999 999999999763  3457899999999999999875

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.92  E-value=8.7e-25  Score=156.47  Aligned_cols=117  Identities=25%  Similarity=0.220  Sum_probs=100.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +.++++|++|||||++|||+++|++|+++|++|++++|+.+  ..++....+...  +.++.++.+|++|++++++++++
T Consensus        44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~  121 (294)
T 3r3s_A           44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHK  121 (294)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHH
Confidence            34578999999999999999999999999999999998733  344444444443  56789999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||...   +..+.+.++|++++++|+.|++
T Consensus       122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  165 (294)
T 3r3s_A          122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALF  165 (294)
T ss_dssp             HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999853   3457899999999999999876

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.92  E-value=1.1e-24  Score=153.19  Aligned_cols=118  Identities=15%  Similarity=0.164  Sum_probs=103.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ....+++|+++||||++|||+++++.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|.++++++++++
T Consensus         8 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~   85 (260)
T 2zat_A            8 RRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTGTVCHVGKAEDRERLVAMA   85 (260)
T ss_dssp             --CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHH
Confidence            334578999999999999999999999999999999999988887777777654  457889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        86 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~  128 (260)
T 2zat_A           86 VNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATV  128 (260)
T ss_dssp             HHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999999999753   3457899999999999999875

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.92  E-value=1e-24  Score=154.89  Aligned_cols=115  Identities=19%  Similarity=0.243  Sum_probs=102.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCC---eeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA---KVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++++|+++||||++|||+++|+.|+++|++|++++|+.+.+++...++...  +.   ++.++.+|++|+++++++++++
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS--GVSEKQVNSVVADVTTEDGQDQIINST   80 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcceEEEEecCCCHHHHHHHHHHH
Confidence            478999999999999999999999999999999999998888777777554  33   7899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--C----CCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--T----PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~----~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..  +    ..+.+.++|++++++|+.|++
T Consensus        81 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  126 (280)
T 1xkq_A           81 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI  126 (280)
T ss_dssp             HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             HHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHH
Confidence            999999999999999864  2    446789999999999999875

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.92  E-value=1.4e-24  Score=153.53  Aligned_cols=117  Identities=25%  Similarity=0.354  Sum_probs=101.5

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+ ..+.....+...  +.++.++.+|++|.++++++++++
T Consensus        24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~  101 (271)
T 4iin_A           24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQTI  101 (271)
T ss_dssp             CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999544 445555555544  567899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|+||||||+..  +..+.+.++|++.+++|+.|++
T Consensus       102 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  143 (271)
T 4iin_A          102 VQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAF  143 (271)
T ss_dssp             HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHH
Confidence            999999999999999875  3447899999999999999875

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.92  E-value=2.2e-24  Score=152.39  Aligned_cols=116  Identities=24%  Similarity=0.344  Sum_probs=102.7

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++....++..+..+.+|+++.++++++++  
T Consensus         4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~--   81 (267)
T 3t4x_A            4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE--   81 (267)
T ss_dssp             CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHH--
T ss_pred             cccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHH--
Confidence            345688999999999999999999999999999999999999988888888877666788999999999999887765  


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        +++++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        82 --~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  121 (267)
T 3t4x_A           82 --KYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGV  121 (267)
T ss_dssp             --HCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             --hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH
Confidence              4689999999999874  4457899999999999999876

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.92  E-value=1.5e-24  Score=151.81  Aligned_cols=112  Identities=24%  Similarity=0.293  Sum_probs=98.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|++ +.+++   .+...  +.++.++++|++|+++++++++++.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIS   78 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhc--CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999998 65554   23332  45788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  118 (249)
T 2ew8_A           79 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGF  118 (249)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999864  3457899999999999999875

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.92  E-value=2e-24  Score=153.14  Aligned_cols=118  Identities=28%  Similarity=0.340  Sum_probs=98.8

Q ss_pred             hccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           16 VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        16 ~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      |...+++++|++|||||++|||+++|++|+++|++|++++|+ +..++...++...  +.++.++.+|++|.++++++.+
T Consensus        23 m~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~   99 (273)
T 3uf0_A           23 MTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADG--GGSAEAVVADLADLEGAANVAE   99 (273)
T ss_dssp             --CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTT--TCEEEEEECCTTCHHHHHHHHH
T ss_pred             cccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHH
Confidence            344567899999999999999999999999999999999965 4555666666554  5789999999999999999954


Q ss_pred             HHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      . .++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       100 ~-~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  142 (273)
T 3uf0_A          100 E-LAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAW  142 (273)
T ss_dssp             H-HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             H-HHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHH
Confidence            4 556699999999999874  4557899999999999999876

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.92  E-value=8.6e-25  Score=153.95  Aligned_cols=117  Identities=27%  Similarity=0.381  Sum_probs=100.1

Q ss_pred             hccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           16 VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        16 ~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      |...+++++|+++||||++|||+++++.|+++|++|++++|+.+..++...++     ..++.++++|++|+++++++++
T Consensus         4 m~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~v~~~~~   78 (263)
T 3ak4_A            4 MAGIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAVEVDVTKRASVDAAMQ   78 (263)
T ss_dssp             --CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----TTCCEEEECCTTCHHHHHHHHH
T ss_pred             cccCcCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hcCCeEEEEeCCCHHHHHHHHH
Confidence            34455688999999999999999999999999999999999987766544433     2257889999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.++++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        79 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  122 (263)
T 3ak4_A           79 KAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVF  122 (263)
T ss_dssp             HHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            99999999999999999864  3457899999999999999875

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.92  E-value=8.5e-25  Score=156.52  Aligned_cols=118  Identities=25%  Similarity=0.331  Sum_probs=101.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCH-HHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL-ASVRKFASDF   97 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~   97 (138)
                      +.++.+|++|||||++|||+++|++|+++|++|++++|+.++.++...++.... +.++.++.+|++|+ ++++++++.+
T Consensus         7 ~~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~   85 (311)
T 3o26_A            7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFI   85 (311)
T ss_dssp             -----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999999888888887654 45799999999998 9999999999


Q ss_pred             HhcCCCccEEEECcccCC--------------------------------CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--------------------------------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--------------------------------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..                                +..+.+.++|+++|++|+.|++
T Consensus        86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  157 (311)
T 3o26_A           86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVK  157 (311)
T ss_dssp             HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHH
T ss_pred             HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHH
Confidence            999999999999999863                                2235688999999999999876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.92  E-value=1.9e-24  Score=154.67  Aligned_cols=116  Identities=11%  Similarity=0.076  Sum_probs=97.3

Q ss_pred             CCCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +.++++|++|||||+  +|||+++|+.|+++|++|++++|++...+ ...++....  .++.++.+|++|.+++++++++
T Consensus        26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKK-RVEPLAEEL--GAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHH-HHHHHHHHH--TCEEEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHhc--CCceEEECCCCCHHHHHHHHHH
Confidence            446899999999999  55999999999999999999999854333 333343332  3578999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..      +..+.+.++|++.+++|+.|++
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  149 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLT  149 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999863      4457899999999999999876

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.92  E-value=1.5e-24  Score=153.40  Aligned_cols=114  Identities=27%  Similarity=0.291  Sum_probs=100.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++|++|||||++|||+++|++|+++|++|+++ .|+.+..++....+...  +.++.++.+|++|.++++++++++.++
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999776 77777777777777655  568999999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  141 (272)
T 4e3z_A          102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSI  141 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHH
Confidence            999999999999864   3446899999999999999875

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.92  E-value=3.3e-24  Score=152.49  Aligned_cols=117  Identities=22%  Similarity=0.338  Sum_probs=101.4

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .+++++|+++||||++|||+++++.|+++|++|++++|+.+. .++..+++...  +.++.++.+|++|.++++++++++
T Consensus        24 ~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~  101 (283)
T 1g0o_A           24 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEA  101 (283)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHHH
Confidence            345789999999999999999999999999999999998764 44445555544  567889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  143 (283)
T 1g0o_A          102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQF  143 (283)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999999864  3457899999999999999876

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.92  E-value=8.7e-25  Score=155.00  Aligned_cols=115  Identities=23%  Similarity=0.290  Sum_probs=98.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ..+|+ |+++||||++|||+++++.|+++|++|++++|+.+.+++...++...   .++.++.+|++|+++++++++++.
T Consensus        17 ~~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~   92 (272)
T 2nwq_A           17 GSHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLP   92 (272)
T ss_dssp             ----C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCC
T ss_pred             CCCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            34566 99999999999999999999999999999999988877776666432   468899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        93 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~  134 (272)
T 2nwq_A           93 EEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLL  134 (272)
T ss_dssp             GGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            99999999999999853   3457889999999999999875

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.92  E-value=1.1e-24  Score=153.73  Aligned_cols=112  Identities=24%  Similarity=0.289  Sum_probs=96.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||++++++|+++|++|++++|+++.+++..+++     ..++.++.+|++|+++++++++++.++
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE   77 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999987766654433     256889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  116 (263)
T 2a4k_A           78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSF  116 (263)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999864  4457899999999999999875

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.92  E-value=1.1e-24  Score=154.94  Aligned_cols=113  Identities=23%  Similarity=0.257  Sum_probs=98.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |++++|++|||||++|||+++|++|+++|++|++++|+.+.+++....+     +.++.++.+|++++++++++++++.+
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   75 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQKRAAERCLA   75 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988777655443     46789999999999999999999999


Q ss_pred             cCCCccEEEECcccCCC---C----CccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT---P----FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~---~----~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+...   .    .+.+.++|++++++|+.|++
T Consensus        76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  120 (281)
T 3zv4_A           76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYI  120 (281)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHH
T ss_pred             hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHH
Confidence            99999999999998632   1    23456789999999999876

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.92  E-value=2.7e-24  Score=150.96  Aligned_cols=112  Identities=22%  Similarity=0.283  Sum_probs=100.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++.++.+|++|+++++++++++.+++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999999999999999999999988887777777654  457889999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  115 (256)
T 1geg_A           80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVI  115 (256)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999864  4457899999999999999875

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.92  E-value=1.4e-24  Score=152.71  Aligned_cols=115  Identities=28%  Similarity=0.333  Sum_probs=101.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++|+++||||++|||+++++.|+++|++|++++|+.+. +++...++.... +.++.++.+|++|+++++++++++.++
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            678999999999999999999999999999999999877 777666665432 346888999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  119 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVF  119 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHH
Confidence            999999999999864  3457899999999999999876

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.92  E-value=1.8e-24  Score=156.84  Aligned_cols=115  Identities=22%  Similarity=0.237  Sum_probs=97.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-----cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-----MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      +|++|+++||||++|||+++|+.|+++|++|++++|+     .+.++++...+...  +.++.++.+|++|+++++++++
T Consensus         2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~--~~~~~~~~~Dvtd~~~v~~~~~   79 (324)
T 3u9l_A            2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN--DVDLRTLELDVQSQVSVDRAID   79 (324)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHH
Confidence            4678999999999999999999999999999998876     33444444444443  5678999999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.+++|++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        80 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~  123 (324)
T 3u9l_A           80 QIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQ  123 (324)
T ss_dssp             HHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999999999999863  5567899999999999999876

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.92  E-value=2.1e-24  Score=152.28  Aligned_cols=120  Identities=24%  Similarity=0.280  Sum_probs=99.9

Q ss_pred             hccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEE-EecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           16 VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIM-ADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        16 ~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      +..+.++++|+++||||++|||+++|++|+++|++|++ ..|+.+..++...++...  +.++.++.+|++|++++++++
T Consensus        18 ~~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~   95 (267)
T 4iiu_A           18 LYFQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN--GGNGRLLSFDVANREQCREVL   95 (267)
T ss_dssp             -------CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             hhhccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHH
Confidence            33444678999999999999999999999999999866 456777777777777665  567899999999999999999


Q ss_pred             HHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           95 SDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++.++++++|+||||||+..  +..+.+.++|++.+++|+.|++
T Consensus        96 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  140 (267)
T 4iiu_A           96 EHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFY  140 (267)
T ss_dssp             HHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHH
Confidence            999999999999999999874  3447899999999999998875

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.92  E-value=4e-24  Score=149.88  Aligned_cols=117  Identities=25%  Similarity=0.317  Sum_probs=103.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++...  +.++.++.+|++|+++++++++++.
T Consensus         8 ~~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   85 (260)
T 3awd_A            8 KLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTESVQNAVRSVH   85 (260)
T ss_dssp             GGCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999988877777777654  4578999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||...   +..+.+.++|++.+++|+.|++
T Consensus        86 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  127 (260)
T 3awd_A           86 EQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMF  127 (260)
T ss_dssp             HHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHH
Confidence            99999999999999764   3457889999999999999875

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.92  E-value=2.8e-24  Score=150.67  Aligned_cols=118  Identities=19%  Similarity=0.182  Sum_probs=99.8

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +..+..+|++|||||++|||+++|++|+++|++|++++ |+.+..++...++...  +.++.++.+|++|.+++++++++
T Consensus         7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~   84 (256)
T 3ezl_A            7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL--GFDFYASEGNVGDWDSTKQAFDK   84 (256)
T ss_dssp             ------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeeEEEecCCCCHHHHHHHHHH
Confidence            33457899999999999999999999999999999888 6666666666666655  56789999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~  127 (256)
T 3ezl_A           85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLF  127 (256)
T ss_dssp             HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999874  4457899999999999999875

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.92  E-value=3.8e-24  Score=150.36  Aligned_cols=117  Identities=26%  Similarity=0.308  Sum_probs=103.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHH---CCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLAL---RGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~---~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++++|+++||||++|||+++++.|++   +|++|++++|+.+.+++...++....++.++.++.+|++|+++++++++++
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999   899999999999888888877766554678999999999999999999999


Q ss_pred             Hh--cCCCcc--EEEECcccCCC----CCc-cCHHHHHHHhhhcccccc
Q 042455           98 TA--RALPLN--ILINKAGICGT----PFM-LSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~--~~~~id--~lv~~ag~~~~----~~~-~~~~~~~~~~~~n~~g~~  137 (138)
                      .+  .++++|  +||||||+..+    ..+ .+.++|++++++|+.|++
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  131 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSML  131 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHH
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHH
Confidence            88  778999  99999998632    335 688999999999999876

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.91  E-value=2.7e-24  Score=151.12  Aligned_cols=112  Identities=21%  Similarity=0.345  Sum_probs=100.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch--hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA--GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +|+++||||++|||++++++|+++|++|++++|+.+.  +++...++...  +.++.++.+|++|+++++++++++.+++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999877  77766666544  4678899999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  117 (258)
T 3a28_C           80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVF  117 (258)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHH
Confidence            99999999999864  3457899999999999999876

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.91  E-value=1.7e-24  Score=154.73  Aligned_cols=117  Identities=17%  Similarity=0.206  Sum_probs=100.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHH----------
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA----------   88 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~----------   88 (138)
                      .++++|+++||||++|||+++++.|+++|++|++++ |+.+.+++...++.... +.++.++++|+++++          
T Consensus         5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~   83 (291)
T 1e7w_A            5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGS   83 (291)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCCCC----C
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc-CCeeEEEEeecCCcccccccccccc
Confidence            457899999999999999999999999999999999 99888887777775232 467899999999999          


Q ss_pred             -------HHHHHHHHHHhcCCCccEEEECcccCC--CCCccC--------------HHHHHHHhhhcccccc
Q 042455           89 -------SVRKFASDFTARALPLNILINKAGICG--TPFMLS--------------KDNIELHFATNHLGAF  137 (138)
Q Consensus        89 -------~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~--------------~~~~~~~~~~n~~g~~  137 (138)
                             +++++++++.++++++|+||||||+..  +..+.+              .++|++++++|+.|++
T Consensus        84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  155 (291)
T 1e7w_A           84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY  155 (291)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHH
Confidence                   999999999999999999999999863  445677              8999999999999876

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.91  E-value=2.8e-24  Score=151.33  Aligned_cols=112  Identities=22%  Similarity=0.325  Sum_probs=99.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++.++...++.     ..+.++.+|++|+++++++++++.++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----cCceEEEecCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999877766555542     34788999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  117 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVF  117 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999864  4457899999999999999875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=5.7e-24  Score=150.54  Aligned_cols=117  Identities=26%  Similarity=0.285  Sum_probs=104.2

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||++|||+++++.|+++|++|++++|+.+..++...++...  +.++.++.+|++|.++++++++++.
T Consensus        26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~  103 (272)
T 1yb1_A           26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVK  103 (272)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc--CCeEEEEEeeCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999988887777777654  4578999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus       104 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  144 (272)
T 1yb1_A          104 AEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF  144 (272)
T ss_dssp             HHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHH
T ss_pred             HHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHH
Confidence            99999999999999864  3456788999999999999865

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.91  E-value=4.7e-24  Score=148.71  Aligned_cols=118  Identities=25%  Similarity=0.296  Sum_probs=103.4

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC--CCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL--SSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~--~~~~~~~~~~~~   96 (138)
                      +..+++|+++||||++|||+++|++|+++|++|++++|+.+.+++...++.... ...+.++.+|+  ++.+++++++++
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~   87 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENATAQQYRELAAR   87 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccCCHHHHHHHHHH
Confidence            345889999999999999999999999999999999999999888888877653 24566777777  999999999999


Q ss_pred             HHhcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+.++++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  131 (247)
T 3i1j_A           88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATF  131 (247)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999863   3457899999999999999876

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=5.8e-24  Score=150.84  Aligned_cols=117  Identities=25%  Similarity=0.263  Sum_probs=103.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|++|||||++|||+++++.|+++|++|++++|+.+.+++...++.......++.++.+|++|+++++++++++.+.
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999999998888877777765533357889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||...  +..+.+.++|++.+++|+.+++
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  147 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALS  147 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999999864  3456789999999999999865

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=2.3e-24  Score=150.57  Aligned_cols=110  Identities=24%  Similarity=0.331  Sum_probs=96.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++...++     +  +.++.+|++|+++++++++++.++
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~~~~~~~~~~~~   74 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----G--AHPVVMDVADPASVERGFAEALAH   74 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----T--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----C--CEEEEecCCCHHHHHHHHHHHHHH
Confidence            477999999999999999999999999999999999987666544322     2  678899999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  113 (245)
T 1uls_A           75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSF  113 (245)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999864  3457899999999999999875

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.91  E-value=3.1e-24  Score=150.48  Aligned_cols=112  Identities=28%  Similarity=0.338  Sum_probs=100.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+.+++...++     +.++.++++|++|+++++++++++.++
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999988777666555     456889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  116 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVF  116 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHH
Confidence            999999999999864  4457899999999999998875

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.91  E-value=2.6e-24  Score=152.52  Aligned_cols=117  Identities=23%  Similarity=0.276  Sum_probs=97.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhc-CCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQ-NPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.+++++...++... ..+.++.++.+|++|+++++++++++.+
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            477999999999999999999999999999999999988887776666321 1245788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCcc----CHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFML----SKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~----~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||...  +..+.    +.++|++++++|+.|++
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  126 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVI  126 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999863  33456    89999999999999876

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.91  E-value=5.1e-24  Score=149.85  Aligned_cols=115  Identities=21%  Similarity=0.200  Sum_probs=100.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +|++|+++||||++|||+++++.|+++|++|++++|+.+.+++...++...  +.++.++.+|++|+++++++++++.++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL--GGQCVPVVCDSSQESEVRSLFEQVDRE   79 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--SSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence            367899999999999999999999999999999999988887777777655  467899999999999999999998876


Q ss_pred             -CCCccEEEECcc--cC-------CCCCccCHHHHHHHhhhcccccc
Q 042455          101 -ALPLNILINKAG--IC-------GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 -~~~id~lv~~ag--~~-------~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++++|+||||||  +.       .+..+.+.++|++++++|+.+++
T Consensus        80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  126 (260)
T 2qq5_A           80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHY  126 (260)
T ss_dssp             HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHH
T ss_pred             cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHH
Confidence             899999999995  32       34557888999999999998875

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.91  E-value=4.1e-24  Score=151.66  Aligned_cols=112  Identities=25%  Similarity=0.310  Sum_probs=99.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+..++....+     +.++.++.+|++|.++++++++++.++
T Consensus         2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (281)
T 3m1a_A            2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLAR   76 (281)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999999988877765543     456899999999999999999999999


Q ss_pred             CCCccEEEECcccC--CCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||..  .+..+.+.++|++++++|+.|++
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  115 (281)
T 3m1a_A           77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPA  115 (281)
T ss_dssp             HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHH
Confidence            99999999999986  35567899999999999999865

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.91  E-value=4.2e-24  Score=149.94  Aligned_cols=112  Identities=24%  Similarity=0.295  Sum_probs=98.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.+++++...++     +.++.++.+|++|+++++++++++.++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999987766654443     356888999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  115 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVF  115 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999864  3457899999999999999875

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.91  E-value=1.1e-24  Score=153.42  Aligned_cols=111  Identities=20%  Similarity=0.311  Sum_probs=97.7

Q ss_pred             hccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           16 VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        16 ~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      +..++++++|++|||||++|||+++|+.|+++|++|++++|+.+...           ..++.++.+|++|+++++++++
T Consensus        20 ~~~m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dv~d~~~v~~~~~   88 (260)
T 3un1_A           20 FQSMMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA-----------DPDIHTVAGDISKPETADRIVR   88 (260)
T ss_dssp             CHHHHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS-----------STTEEEEESCTTSHHHHHHHHH
T ss_pred             hhhhhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------cCceEEEEccCCCHHHHHHHHH
Confidence            33445688999999999999999999999999999999999876432           2358899999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        89 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  132 (260)
T 3un1_A           89 EGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFF  132 (260)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            99999999999999999874  4457899999999999999876

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=4.4e-24  Score=151.13  Aligned_cols=113  Identities=26%  Similarity=0.403  Sum_probs=98.6

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ..++++|+++||||++|||++++++|+++|++|++++|+++..++...++      ..+.++.+|++|+++++++++++.
T Consensus         4 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~   77 (270)
T 1yde_A            4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETI   77 (270)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------cCCeEEEcCCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999987766554433      237889999999999999999999


Q ss_pred             hcCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||...   +..+.+.++|++++++|+.|++
T Consensus        78 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  119 (270)
T 1yde_A           78 RRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTY  119 (270)
T ss_dssp             HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999863   3457899999999999999876

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.91  E-value=8.9e-24  Score=149.74  Aligned_cols=119  Identities=18%  Similarity=0.186  Sum_probs=102.5

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ...+++++|+++||||++|||++++++|+++|++|++++|+.+..++....+...  +.++.++.+|++|.+++++++++
T Consensus        27 ~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~  104 (279)
T 3ctm_A           27 LDLFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQ  104 (279)
T ss_dssp             GGGGCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHH
Confidence            3445689999999999999999999999999999999999988776666555443  45788999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC---CCC-ccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG---TPF-MLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~---~~~-~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+.++++|+||||||...   +.. +.+.++|++.+++|+.|++
T Consensus       105 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  149 (279)
T 3ctm_A          105 QEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVY  149 (279)
T ss_dssp             HHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHH
T ss_pred             HHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999863   333 6788999999999999864

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.91  E-value=5e-24  Score=149.64  Aligned_cols=118  Identities=27%  Similarity=0.354  Sum_probs=101.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+...+...++.... +.++.++.+|++|.++++++++++.
T Consensus         9 ~~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~   87 (265)
T 1h5q_A            9 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQID   87 (265)
T ss_dssp             EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHH
Confidence            346889999999999999999999999999999999998776665555554332 4568899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  128 (265)
T 1h5q_A           88 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVF  128 (265)
T ss_dssp             HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHH
Confidence            99999999999999864  3446789999999999998875

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.91  E-value=2.3e-24  Score=152.37  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=95.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ..+++|++|||||++|||+++|+.|+++|++|++++|+.+.+++.       . ...+.++.+|++|.++++++++++.+
T Consensus        12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~-------~-~~~~~~~~~Dv~d~~~v~~~~~~~~~   83 (266)
T 3p19_A           12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL-------N-LPNTLCAQVDVTDKYTFDTAITRAEK   83 (266)
T ss_dssp             ---CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT-------C-CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh-------h-cCCceEEEecCCCHHHHHHHHHHHHH
Confidence            357799999999999999999999999999999999987654331       1 24688899999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+|++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  123 (266)
T 3p19_A           84 IYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLL  123 (266)
T ss_dssp             HHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             HCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999999873  4557899999999999999876

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.91  E-value=1.4e-23  Score=147.87  Aligned_cols=118  Identities=12%  Similarity=0.090  Sum_probs=99.1

Q ss_pred             ccCCCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .+...+++|++|||||+  +|||+++|++|+++|++|++++|+... .+..+++....  ..+.++.+|++|++++++++
T Consensus         7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   83 (271)
T 3ek2_A            7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRF-KDRITEFAAEF--GSELVFPCDVADDAQIDALF   83 (271)
T ss_dssp             --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHHHHT--TCCCEEECCTTCHHHHHHHH
T ss_pred             CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhh-HHHHHHHHHHc--CCcEEEECCCCCHHHHHHHH
Confidence            34556889999999998  999999999999999999999998543 34444554443  34788999999999999999


Q ss_pred             HHHHhcCCCccEEEECcccCC------CCCc-cCHHHHHHHhhhcccccc
Q 042455           95 SDFTARALPLNILINKAGICG------TPFM-LSKDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~------~~~~-~~~~~~~~~~~~n~~g~~  137 (138)
                      +++.++++++|+||||||+..      +..+ .+.++|++++++|+.|++
T Consensus        84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  133 (271)
T 3ek2_A           84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFP  133 (271)
T ss_dssp             HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHH
Confidence            999999999999999999863      3344 899999999999999875

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.91  E-value=1.4e-23  Score=149.48  Aligned_cols=117  Identities=26%  Similarity=0.254  Sum_probs=103.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||++|||+++++.|+++|++|++++|+++..++..+++...  +.++.++.+|++|.++++++++++.
T Consensus        39 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~  116 (285)
T 2c07_A           39 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKIL  116 (285)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999988877777777654  4678899999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus       117 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  157 (285)
T 2c07_A          117 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLF  157 (285)
T ss_dssp             HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHH
T ss_pred             HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHH
Confidence            99999999999999864  3457899999999999999875

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.91  E-value=6.6e-24  Score=148.90  Aligned_cols=112  Identities=26%  Similarity=0.289  Sum_probs=97.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|+++||||++|||++++++|+++|++|++++|+.+  ++...++...  +.++.++.+|++|+++++++++++.+++
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~   77 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARH--GVKAVHHPADLSDVAQIEALFALAEREF   77 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTT--SCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhc--CCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999999999876  4444555443  4568889999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  115 (255)
T 2q2v_A           78 GGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVF  115 (255)
T ss_dssp             SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999999864  3457889999999999999875

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.91  E-value=1e-23  Score=150.87  Aligned_cols=119  Identities=24%  Similarity=0.223  Sum_probs=104.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +..++++|+++||||++|||++++++|+++|++|++++|+.+..++...++.... +.++.++.+|++|.++++++++++
T Consensus        20 ~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~   98 (302)
T 1w6u_A           20 PPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSEL   98 (302)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHH
Confidence            4456889999999999999999999999999999999999888877777765542 356889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        99 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  140 (302)
T 1w6u_A           99 IKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTA  140 (302)
T ss_dssp             HHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHH
Confidence            999999999999999753  3447889999999999998875

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=9.7e-24  Score=148.16  Aligned_cols=110  Identities=21%  Similarity=0.289  Sum_probs=96.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+. ++...++     . . .++++|++|+++++++++++.+
T Consensus         2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~-----~-~-~~~~~D~~~~~~~~~~~~~~~~   73 (256)
T 2d1y_A            2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI-----G-G-AFFQVDLEDERERVRFVEEAAY   73 (256)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH-----T-C-EEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh-----h-C-CEEEeeCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999877 5554444     1 3 6789999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  113 (256)
T 2d1y_A           74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPM  113 (256)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999864  4457889999999999999875

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.91  E-value=5.9e-24  Score=149.59  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=96.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.+|+++||||++|||+++|++|+++|++|++++|+.+...+...++.... +.++.++.+|++|+++++++++++.++
T Consensus         4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999887665444444333322 467999999999999999999999999


Q ss_pred             CCCccEEEECcccC----CCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGIC----GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||..    .+..+.+.++|++.+++|+.|++
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  123 (264)
T 3i4f_A           83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVF  123 (264)
T ss_dssp             HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHH
Confidence            99999999999943    23457899999999999999875

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.91  E-value=8.6e-24  Score=150.10  Aligned_cols=117  Identities=18%  Similarity=0.225  Sum_probs=99.9

Q ss_pred             hhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           15 EVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        15 ~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .|..++++++|++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|++|.+++++++
T Consensus        21 ~m~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~   95 (281)
T 3ppi_A           21 SMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDSVLAAI   95 (281)
T ss_dssp             ---CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHH
T ss_pred             hhhhhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHH
Confidence            344456789999999999999999999999999999999999998888777766     467899999999999999999


Q ss_pred             HHHHhcCCCccEEEEC-cccCCC--C-----CccCHHHHHHHhhhcccccc
Q 042455           95 SDFTARALPLNILINK-AGICGT--P-----FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~-ag~~~~--~-----~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++ ++++++|++||| +|....  .     .+.+.++|++.+++|+.|++
T Consensus        96 ~~~-~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  145 (281)
T 3ppi_A           96 EAA-NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTY  145 (281)
T ss_dssp             HHH-TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHH
T ss_pred             HHH-HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHH
Confidence            998 888999999999 554421  1     25788999999999999875

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.91  E-value=1.2e-23  Score=148.33  Aligned_cols=118  Identities=10%  Similarity=0.098  Sum_probs=100.2

Q ss_pred             CCCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+++++|+++||||+  +|||+++|++|+++|++|++++|+....+. ..++....+..++.++.+|++|.+++++++++
T Consensus         2 ~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            2 NFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKS-VHELAGTLDRNDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             CSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHHHTSSSCCCEEEECCCSSSHHHHHHHHH
T ss_pred             ccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHH-HHHHHHhcCCCCceEEeCCCCCHHHHHHHHHH
Confidence            356889999999999  669999999999999999999998654443 44444444344799999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..      +..+.+.++|++.+++|+.+++
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  127 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLT  127 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHH
Confidence            9999999999999999864      3447899999999999999875

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.91  E-value=6.9e-24  Score=150.17  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=97.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCH----HHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSL----ASVRKFAS   95 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~----~~~~~~~~   95 (138)
                      .|++|+++||||++|||+++++.|+++|++|++++| +.+.+++...++.... +.++.++.+|++|.    ++++++++
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHH
Confidence            367899999999999999999999999999999999 8877777777775542 35688999999999    99999999


Q ss_pred             HHHhcCCCccEEEECcccCC--CCCccCH-----------HHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG--TPFMLSK-----------DNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~--~~~~~~~-----------~~~~~~~~~n~~g~~  137 (138)
                      ++.++++++|+||||||+..  +..+.+.           ++|++++++|+.|++
T Consensus        87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  141 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPL  141 (276)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHH
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHH
Confidence            99999999999999999864  3446677           899999999999876

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.91  E-value=1.8e-24  Score=154.44  Aligned_cols=112  Identities=45%  Similarity=0.641  Sum_probs=99.0

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ..++++++|+++||||++|||++++++|+++|++|++++|+.++.++...++     +.++.++.+|++|.+++++++++
T Consensus         9 ~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~   83 (291)
T 3rd5_A            9 ADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADG   83 (291)
T ss_dssp             GGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHT
T ss_pred             hhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHh
Confidence            3455789999999999999999999999999999999999988777655443     56799999999999999999887


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +    +++|+||||||+..+..+.+.++|++++++|+.|++
T Consensus        84 ~----~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~  120 (291)
T 3rd5_A           84 V----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHF  120 (291)
T ss_dssp             C----CCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHH
T ss_pred             c----CCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            5    789999999999876677889999999999999876

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.91  E-value=1.9e-23  Score=145.37  Aligned_cols=117  Identities=27%  Similarity=0.334  Sum_probs=102.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+..++...++.... +.++.++.+|++|+++++++++++.+
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYN   81 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999887777666664421 45688999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  121 (248)
T 2pnf_A           82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTF  121 (248)
T ss_dssp             HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHH
Confidence            9999999999999864  3346789999999999999875

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.91  E-value=1.5e-23  Score=146.56  Aligned_cols=115  Identities=23%  Similarity=0.332  Sum_probs=101.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++||||+++||++++++|+++|++|++++|+ .+.+++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVA   81 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999 77777777777654  46789999999999999999999999


Q ss_pred             cCCCccEEEECccc-CC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGI-CG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~-~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||. ..  +..+.+.++|++++++|+.|++
T Consensus        82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (258)
T 3afn_B           82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVV  122 (258)
T ss_dssp             HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHH
Confidence            99999999999997 32  3456789999999999998875

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.91  E-value=1.4e-23  Score=147.21  Aligned_cols=115  Identities=22%  Similarity=0.288  Sum_probs=101.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++||||++|||++++++|+++|++|++++| +.+..++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999 777777766666554  46788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  121 (261)
T 1gee_A           82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAF  121 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHH
Confidence            9999999999999864  3446889999999999999875

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.91  E-value=2e-23  Score=146.74  Aligned_cols=114  Identities=19%  Similarity=0.303  Sum_probs=100.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++     +.++.++.+|++|+++++++++++.
T Consensus         7 ~~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~   81 (265)
T 2o23_A            7 CRSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAK   81 (265)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999988877766655     4568899999999999999999999


Q ss_pred             hcCCCccEEEECcccCCC--CC------ccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGT--PF------MLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~--~~------~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||....  ..      +.+.++|++.+++|+.+++
T Consensus        82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~  128 (265)
T 2o23_A           82 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTF  128 (265)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHH
T ss_pred             HHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHH
Confidence            999999999999998642  22      3688999999999998875

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.90  E-value=1.2e-23  Score=149.53  Aligned_cols=115  Identities=10%  Similarity=0.083  Sum_probs=97.8

Q ss_pred             CCCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +.++++|+++||||+  +|||+++|++|+++|++|++++|+.  .++..+++....  .++.++.+|++|.+++++++++
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~   96 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEF--NPAAVLPCDVISDQEIKDLFVE   96 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGG--CCSEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhc--CCceEEEeecCCHHHHHHHHHH
Confidence            446889999999988  7899999999999999999999987  344455555543  3588999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCCC------CCc-cCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGT------PFM-LSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~------~~~-~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+...      ..+ .+.++|++.+++|+.+++
T Consensus        97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~  144 (280)
T 3nrc_A           97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFA  144 (280)
T ss_dssp             HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHH
Confidence            99999999999999998642      223 889999999999999875

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.90  E-value=1.6e-23  Score=147.38  Aligned_cols=117  Identities=21%  Similarity=0.208  Sum_probs=101.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+..++...++...  +.++.++.+|+++.++++++++++.
T Consensus         9 ~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   86 (266)
T 1xq1_A            9 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVS   86 (266)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999988887777777654  4578899999999999999999999


Q ss_pred             hcC-CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARA-LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~-~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+ +++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  128 (266)
T 1xq1_A           87 SMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAY  128 (266)
T ss_dssp             HHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            888 89999999999863  4457889999999999998875

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.9e-24  Score=148.02  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=97.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +|+++||||++|||+++|++|+++|  +.|++++|+++.+++...++     +.++.++.+|++|+++++++++++.+++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVVGDITEDSVLKQLVNAAVKGH   76 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-----GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            7999999999999999999999985  68999999988877766655     4678999999999999999999999999


Q ss_pred             CCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  115 (254)
T 3kzv_A           77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIV  115 (254)
T ss_dssp             SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHH
T ss_pred             CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            99999999999853   4557899999999999999876

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=2e-23  Score=149.49  Aligned_cols=120  Identities=22%  Similarity=0.236  Sum_probs=104.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC---CCCeeEEEEecCCCHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN---PAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ....+++|+++||||++|||++++++|+++|++|++++|+.+..++...++....   .+.++.++.+|++|++++++++
T Consensus        12 ~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~   91 (303)
T 1yxm_A           12 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   91 (303)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHH
Confidence            3346889999999999999999999999999999999999888887777776521   1457899999999999999999


Q ss_pred             HHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           95 SDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++.+.++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        92 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  136 (303)
T 1yxm_A           92 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF  136 (303)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999999999753  3456789999999999999875

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.90  E-value=9.7e-24  Score=147.72  Aligned_cols=108  Identities=25%  Similarity=0.383  Sum_probs=96.4

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||++|||+++++.|+++|++|++++|+.+.+++...++     +.++.++.+|++|+++++++++++.++++++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   75 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWCNI   75 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999988777766655     3468899999999999999999999999999


Q ss_pred             cEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+||||||+..   +..+.+.++|++++++|+.|++
T Consensus        76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  111 (248)
T 3asu_A           76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLV  111 (248)
T ss_dssp             CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            99999999762   3457899999999999999875

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.90  E-value=9.9e-24  Score=149.28  Aligned_cols=109  Identities=23%  Similarity=0.289  Sum_probs=93.7

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+..++++|++|||||++|||+++|+.|+++|++|++++|+.+..            ...+..+++|++|++++++++++
T Consensus         7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~   74 (269)
T 3vtz_A            7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD------------VNVSDHFKIDVTNEEEVKEAVEK   74 (269)
T ss_dssp             ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C------------TTSSEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc------------cCceeEEEecCCCHHHHHHHHHH
Confidence            345578899999999999999999999999999999999987543            12466789999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        75 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  117 (269)
T 3vtz_A           75 TTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSY  117 (269)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999864  4457899999999999999876

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.90  E-value=2.6e-23  Score=145.29  Aligned_cols=117  Identities=26%  Similarity=0.366  Sum_probs=103.0

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++++|+++||||+++||++++++|+++|++|++++|+.+..++...++...  +.++.++.+|++|+++++++++++.
T Consensus         6 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   83 (255)
T 1fmc_A            6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999988877777777654  4568899999999999999999999


Q ss_pred             hcCCCccEEEECcccCCC-CCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGT-PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||.... ..+.+.++|++.+++|+.|++
T Consensus        84 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~  123 (255)
T 1fmc_A           84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFF  123 (255)
T ss_dssp             HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHH
T ss_pred             HhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHH
Confidence            999999999999998642 236789999999999999875

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.90  E-value=2e-23  Score=147.97  Aligned_cols=114  Identities=12%  Similarity=0.115  Sum_probs=98.4

Q ss_pred             CCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++|+++||||+  +|||+++++.|+++|++|++++|+.+ .++..+++....+  .+.++.+|++|+++++++++++.
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~   79 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVK   79 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHH
Confidence            4779999999999  99999999999999999999999876 4444555554432  37789999999999999999999


Q ss_pred             hcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..      +..+.+.++|++++++|+.|++
T Consensus        80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  124 (275)
T 2pd4_A           80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLI  124 (275)
T ss_dssp             HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999864      3447899999999999999876

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.90  E-value=3.8e-24  Score=150.27  Aligned_cols=114  Identities=20%  Similarity=0.269  Sum_probs=90.0

Q ss_pred             CchhhhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           11 STAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        11 ~~~~~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      +++..+.+..++++|+++||||++|||++++++|+++|++|++++|+.++++             .+.++.+|++|++++
T Consensus         8 ~~~~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~Dl~d~~~v   74 (253)
T 2nm0_A            8 HHHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-------------GFLAVKCDITDTEQV   74 (253)
T ss_dssp             ------------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTSHHHH
T ss_pred             cccCCCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc-------------cceEEEecCCCHHHH
Confidence            3344445556788999999999999999999999999999999999876532             267889999999999


Q ss_pred             HHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           91 RKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++++.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        75 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  123 (253)
T 2nm0_A           75 EQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTF  123 (253)
T ss_dssp             HHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999863  3456788999999999999875

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.90  E-value=1.1e-23  Score=152.99  Aligned_cols=116  Identities=17%  Similarity=0.210  Sum_probs=99.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHH-----------
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA-----------   88 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~-----------   88 (138)
                      ++++|++|||||++|||+++|+.|+++|++|++++ |+.+.+++...++.... +.++.++.+|++|++           
T Consensus        43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~  121 (328)
T 2qhx_A           43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGSA  121 (328)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCC-------C
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCeEEEEEeeCCCchhcccccccccc
Confidence            37899999999999999999999999999999999 99888887777775333 467899999999999           


Q ss_pred             ------HHHHHHHHHHhcCCCccEEEECcccCC--CCCccC--------------HHHHHHHhhhcccccc
Q 042455           89 ------SVRKFASDFTARALPLNILINKAGICG--TPFMLS--------------KDNIELHFATNHLGAF  137 (138)
Q Consensus        89 ------~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~--------------~~~~~~~~~~n~~g~~  137 (138)
                            +++++++++.++++++|+||||||+..  +..+.+              .++|++++++|+.|++
T Consensus       122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~  192 (328)
T 2qhx_A          122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY  192 (328)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHH
T ss_pred             ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHH
Confidence                  999999999999999999999999863  344666              8999999999999876

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.90  E-value=2.6e-23  Score=145.30  Aligned_cols=113  Identities=31%  Similarity=0.402  Sum_probs=98.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCee-EEEEecCCCHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV-DVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.++.++...++     +.++ .++.+|++|.++++++++++
T Consensus         6 ~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~   80 (254)
T 2wsb_A            6 VFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL-----GAAVAARIVADVTDAEAMTAAAAEA   80 (254)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceeEEEEecCCHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999988777666555     3456 88999999999999999998


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+ ++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        81 ~~-~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  121 (254)
T 2wsb_A           81 EA-VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMF  121 (254)
T ss_dssp             HH-HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHH
T ss_pred             Hh-hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            88 899999999999864  3457789999999999998865

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.90  E-value=2.5e-23  Score=146.41  Aligned_cols=115  Identities=12%  Similarity=0.124  Sum_probs=98.2

Q ss_pred             CCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        20 ~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +++++|+++||||+  +|||+++++.|+++|++|++++|+.+ .++..+++....+  .+.++.+|++|+++++++++++
T Consensus         4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~   80 (261)
T 2wyu_A            4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALG--GALLFRADVTQDEELDALFAGV   80 (261)
T ss_dssp             ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHH
Confidence            35789999999999  99999999999999999999999875 4444455544332  3788999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+..      +..+.+.++|++.+++|+.|++
T Consensus        81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  126 (261)
T 2wyu_A           81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLV  126 (261)
T ss_dssp             HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999999863      3447899999999999999876

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.90  E-value=3.2e-23  Score=146.16  Aligned_cols=118  Identities=21%  Similarity=0.279  Sum_probs=102.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +.+++++|+++||||+++||++++++|+++|++|++++| +.+..++...++...  +.++.++.+|++|++++++++++
T Consensus        15 ~~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~   92 (274)
T 1ja9_A           15 ASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDK   92 (274)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHH
Confidence            345688999999999999999999999999999999999 666677766666654  46788999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        93 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  135 (274)
T 1ja9_A           93 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQF  135 (274)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999864  3447889999999999998875

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.90  E-value=1.4e-23  Score=148.28  Aligned_cols=112  Identities=16%  Similarity=0.185  Sum_probs=96.2

Q ss_pred             CCCCCEEEEeCC--CCchHHHHHHHHHHCCCEEEEEecCcchh-HHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNMAAG-RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~--~~~iG~~~a~~l~~~g~~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++++|+++|||+  ++|||+++|+.|+++|++|++++|+.+.. ++...    .. +.++.++.+|++|+++++++++++
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----~~-~~~~~~~~~Dv~~~~~v~~~~~~~   78 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD----RL-PAKAPLLELDVQNEEHLASLAGRV   78 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHT----TS-SSCCCEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHH----hc-CCCceEEEccCCCHHHHHHHHHHH
Confidence            478999999999  99999999999999999999999987653 33322    22 346788999999999999999999


Q ss_pred             HhcCC---CccEEEECcccCC-------CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARAL---PLNILINKAGICG-------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~---~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+++|   ++|+||||||+..       +..+.+.++|++.+++|+.|++
T Consensus        79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  128 (269)
T 2h7i_A           79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYA  128 (269)
T ss_dssp             HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHH
Confidence            99998   9999999999764       3457899999999999999876

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.8e-23  Score=146.91  Aligned_cols=117  Identities=26%  Similarity=0.298  Sum_probs=98.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-----CCCeeEEEEecCCCHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-----PAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.+..++...++....     +..++.++.+|++|.++++++++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            4789999999999999999999999999999999999887776655443321     11568899999999999999999


Q ss_pred             HHHhcCCCc-cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPL-NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~i-d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.+.++++ |+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  128 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTF  128 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHH
Confidence            999999999 99999999864  3346789999999999999875

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.90  E-value=5e-23  Score=146.54  Aligned_cols=114  Identities=11%  Similarity=0.103  Sum_probs=97.9

Q ss_pred             CCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++|+++||||+  +|||+++|+.|+++|++|++++|+.+ .++...++....+  .+.++.+|++|+++++++++++.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~   94 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLE   94 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHH
Confidence            3789999999999  99999999999999999999999875 4444555544432  36788999999999999999999


Q ss_pred             hcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..      +..+.+.++|++.+++|+.|++
T Consensus        95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  139 (285)
T 2p91_A           95 ENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLI  139 (285)
T ss_dssp             HHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            99999999999999863      2347889999999999999876

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.90  E-value=2.8e-23  Score=146.43  Aligned_cols=114  Identities=11%  Similarity=0.125  Sum_probs=97.0

Q ss_pred             CCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++|+++||||+  +|||+++++.|+++|++|++++|+. ..++..+++....+  ...++++|++|+++++++++++.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~   82 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELG   82 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHH
Confidence            3789999999999  9999999999999999999999987 44455555554432  24788999999999999999999


Q ss_pred             hcCCCccEEEECcccCC------CCCc-cCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG------TPFM-LSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~------~~~~-~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+..      +..+ .+.++|++++++|+.|++
T Consensus        83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  128 (265)
T 1qsg_A           83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFV  128 (265)
T ss_dssp             TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHH
T ss_pred             HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHH
Confidence            99999999999999764      2235 789999999999999876

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.90  E-value=3.9e-23  Score=144.16  Aligned_cols=114  Identities=22%  Similarity=0.290  Sum_probs=100.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+..++...++..   ..++.++.+|++|+++++++++++.+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc---cCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999998777766655532   146889999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  118 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVF  118 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHH
Confidence            999999999999864  3457889999999999998875

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.90  E-value=2.3e-23  Score=145.05  Aligned_cols=115  Identities=23%  Similarity=0.274  Sum_probs=91.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++||||++|||++++++|+++|++|+++ .|+++..++...++...  +.++.++.+|++|+++++++++++.+
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999998 67777777766666554  46788999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  119 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAY  119 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHH
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999864  3446788899999999998865

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=2.2e-23  Score=147.02  Aligned_cols=111  Identities=29%  Similarity=0.394  Sum_probs=96.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.+..++...++.....+.++.++.+|++|+++++++++++.++
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999998877776666654333456889999999999999999999999


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||..      +.++|++.+++|+.|++
T Consensus        84 ~g~id~lv~~Ag~~------~~~~~~~~~~~n~~~~~  114 (267)
T 2gdz_A           84 FGRLDILVNNAGVN------NEKNWEKTLQINLVSVI  114 (267)
T ss_dssp             HSCCCEEEECCCCC------CSSSHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCC------ChhhHHHHHhHHHHHHH
Confidence            99999999999974      24678999999998765

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.90  E-value=7.4e-23  Score=144.68  Aligned_cols=117  Identities=22%  Similarity=0.338  Sum_probs=100.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+..++...++..   ..++.++.+|++|+++++++++++
T Consensus        10 ~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~   86 (278)
T 2bgk_A           10 STNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTT   86 (278)
T ss_dssp             -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC---CCceEEEECCCCCHHHHHHHHHHH
Confidence            34467899999999999999999999999999999999988776665555521   236889999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||...    +..+.+.++|++.+++|+.|++
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  130 (278)
T 2bgk_A           87 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF  130 (278)
T ss_dssp             HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHH
Confidence            999999999999999763    3457888999999999998875

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.89  E-value=7.4e-23  Score=142.31  Aligned_cols=112  Identities=23%  Similarity=0.373  Sum_probs=100.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC-------EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV-------HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~-------~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +|+++||||++|||++++++|+++|+       +|++++|+.+..++...++...  +.++.++.+|++|++++++++++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHH
Confidence            68999999999999999999999999       9999999988877777766543  56789999999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  122 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF  122 (244)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHH
Confidence            9999999999999999863  3446789999999999999875

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.89  E-value=8.8e-23  Score=145.29  Aligned_cols=116  Identities=23%  Similarity=0.246  Sum_probs=101.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.+.+++...++.... ..++.++.+|++|.++++++++++.+.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999988887777665542 347889999999999999999999999


Q ss_pred             CCCccEEEEC-cccCC-CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINK-AGICG-TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~-ag~~~-~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+|||| +|... +..+.+.++|++++++|+.|++
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~  142 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYV  142 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHH
Confidence            9999999999 57653 3446789999999999999875

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.89  E-value=4.2e-23  Score=145.67  Aligned_cols=104  Identities=26%  Similarity=0.287  Sum_probs=93.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|++|||||++|||+++++.|+++|++|++++|+.+.             +.++.++.+|++|.++++++++++.++
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~   71 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIFKE   71 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999998754             245788999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        72 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  110 (264)
T 2dtx_A           72 YGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYY  110 (264)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            999999999999864  4457899999999999999875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.89  E-value=1.6e-23  Score=148.05  Aligned_cols=108  Identities=26%  Similarity=0.286  Sum_probs=91.6

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ..++++++|+++||||++|||+++|++|+++|++|++++|+.+..+             ....+.+|+++.+++++++++
T Consensus        21 ~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-------------~~~~~~~Dv~~~~~~~~~~~~   87 (266)
T 3uxy_A           21 QSMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-------------ADLHLPGDLREAAYADGLPGA   87 (266)
T ss_dssp             -----CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC-------------CSEECCCCTTSHHHHHHHHHH
T ss_pred             hhhhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-------------hhhccCcCCCCHHHHHHHHHH
Confidence            3455789999999999999999999999999999999999865432             123458999999999999999


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        88 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  130 (266)
T 3uxy_A           88 VAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPF  130 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999999874  4457899999999999999876

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.89  E-value=8.6e-23  Score=142.35  Aligned_cols=113  Identities=26%  Similarity=0.265  Sum_probs=98.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++||||++|||++++++|+++|++|++++|+.+..++...++.... +.++.++.+|++|+++++++++++.+++++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999999999999999999999888777666652222 456889999999999999999999999999


Q ss_pred             ccEEEECcccCCC-----CCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGT-----PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~-----~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+||||||....     ..+.+.++|++.+++|+.|++
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  119 (250)
T 2cfc_A           81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIF  119 (250)
T ss_dssp             CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHH
T ss_pred             CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHH
Confidence            9999999998642     346789999999999998875

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.89  E-value=1.3e-22  Score=141.02  Aligned_cols=112  Identities=24%  Similarity=0.291  Sum_probs=98.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEE-EecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIM-ADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +|+++||||++|||++++++|+++|++|++ .+|+.+..++...++...  +.++.++.+|++|+++++++++++.++++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999999999999988 488887777766666554  45788999999999999999999999999


Q ss_pred             CccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  115 (244)
T 1edo_A           79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVF  115 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHH
Confidence            9999999999864  3346789999999999999875

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.89  E-value=3e-23  Score=145.65  Aligned_cols=109  Identities=23%  Similarity=0.271  Sum_probs=89.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|++|||||++|||+++|++|+++|++|++++|+.+...   ..+     +.++.++++|++|+++++++++.+.+
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~   76 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---ADL-----GDRARFAAADVTDEAAVASALDLAET   76 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HHT-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---Hhc-----CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999654322   222     46789999999999999999998877


Q ss_pred             cCCCccEEEECcccCCC------CCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGT------PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~------~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++++|+||||||+...      ..+.+.++|++++++|+.|++
T Consensus        77 -~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  119 (257)
T 3tl3_A           77 -MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF  119 (257)
T ss_dssp             -HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred             -hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHH
Confidence             8999999999998631      224789999999999999876

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.89  E-value=8.2e-23  Score=142.90  Aligned_cols=115  Identities=25%  Similarity=0.280  Sum_probs=99.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|+++||||++|||+++|++|+++|++|+++ .|+.+..++...++...  +.++.++.+|+++.++++++++++.+
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDN   81 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc--CCceEEEecCcCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999885 66777777777777665  56789999999999999999999877


Q ss_pred             cC------CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RA------LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~------~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+      +++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  127 (255)
T 3icc_A           82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPF  127 (255)
T ss_dssp             HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHH
Confidence            65      35999999999864  3446899999999999999876

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.88  E-value=2.8e-22  Score=140.29  Aligned_cols=105  Identities=31%  Similarity=0.380  Sum_probs=93.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+.+.         ... +  +.++.+|++|+++++++++++.++
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---------~~~-~--~~~~~~D~~d~~~~~~~~~~~~~~   71 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---------EQY-P--FATEVMDVADAAQVAQVCQRLLAE   71 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---------SCC-S--SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---------hcC-C--ceEEEcCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999998652         111 2  778899999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        72 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  110 (250)
T 2fwm_X           72 TERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAF  110 (250)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHH
Confidence            999999999999863  4557899999999999999875

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.88  E-value=3e-22  Score=140.86  Aligned_cols=114  Identities=24%  Similarity=0.302  Sum_probs=99.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHH-CCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLAL-RGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~-~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++|+++||||++|||+++++.|++ +|++|++++|+.+..++...++...  +.++.++.+|++|.++++++++++.++
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            4679999999999999999999999 9999999999988888777777654  456889999999999999999999999


Q ss_pred             CCCccEEEECcccCCCC-CccC-HHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTP-FMLS-KDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~-~~~~-~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||..... ...+ .++|++++++|+.|++
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  118 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTR  118 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHH
Confidence            99999999999986432 2334 5889999999999875

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.88  E-value=1.8e-22  Score=146.07  Aligned_cols=114  Identities=22%  Similarity=0.305  Sum_probs=97.2

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe---------cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD---------RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~---------r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      .+++++|+++||||++|||+++|+.|+++|++|++++         |+.+++++...++...  +..   ..+|+++.++
T Consensus         4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~--~~~---~~~D~~~~~~   78 (319)
T 1gz6_A            4 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR--GGK---AVANYDSVEA   78 (319)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT--TCE---EEEECCCGGG
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh--CCe---EEEeCCCHHH
Confidence            3568899999999999999999999999999999964         4666777777777654  232   2589999999


Q ss_pred             HHHHHHHHHhcCCCccEEEECcccCCC--CCccCHHHHHHHhhhcccccc
Q 042455           90 VRKFASDFTARALPLNILINKAGICGT--PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~~~~--~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++++.+.++++|+||||||+...  ..+.+.++|+.+|++|+.|+|
T Consensus        79 ~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~  128 (319)
T 1gz6_A           79 GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSF  128 (319)
T ss_dssp             HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999999999999999998743  447899999999999999976

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.88  E-value=1.6e-22  Score=141.55  Aligned_cols=109  Identities=27%  Similarity=0.375  Sum_probs=92.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCH-HHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL-ASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~   98 (138)
                      ++++|+++||||++|||++++++|+++|++ |++++|+.+.  +..+++....++.++.++.+|++|+ ++++++++++.
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence            578999999999999999999999999996 9999998743  2233444444456789999999998 99999999999


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++++|+||||||+.      +.++|++.+++|+.|++
T Consensus        80 ~~~g~id~lv~~Ag~~------~~~~~~~~~~~N~~g~~  112 (254)
T 1sby_A           80 DQLKTVDILINGAGIL------DDHQIERTIAINFTGLV  112 (254)
T ss_dssp             HHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHH
T ss_pred             HhcCCCCEEEECCccC------CHHHHhhhheeeehhHH
Confidence            9999999999999973      45778999999998875

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.88  E-value=3e-22  Score=138.55  Aligned_cols=109  Identities=24%  Similarity=0.286  Sum_probs=95.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+|+++||||++|||++++++|+++|++|++++|+.+.+++...++      .++.++.+|++|.++++++++++.+.++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVREEGDWARAVAAMEEAFG   77 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------hhceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999987766554433      1578889999999999999999999999


Q ss_pred             CccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        78 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  114 (234)
T 2ehd_A           78 ELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAF  114 (234)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            9999999999763  3456789999999999999875

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.88  E-value=2.1e-22  Score=140.75  Aligned_cols=105  Identities=23%  Similarity=0.362  Sum_probs=90.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+..++             +..+.+|++|+++++++++++.+
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-------------~~~~~~D~~~~~~~~~~~~~~~~   77 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-------------LFGVEVDVTDSDAVDRAFTAVEE   77 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT-------------SEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH-------------hcCeeccCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999998765321             11378999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        78 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  117 (247)
T 1uzm_A           78 HQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF  117 (247)
T ss_dssp             HHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999999999864  3457899999999999999876

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.88  E-value=1.8e-22  Score=140.91  Aligned_cols=112  Identities=26%  Similarity=0.377  Sum_probs=88.5

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+..+..+|++|||||++|||+++|+.|+++|++|++++|+.+.+++...++     ..++.++.+|+++.+++++++++
T Consensus         7 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~   81 (249)
T 3f9i_A            7 HHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISK   81 (249)
T ss_dssp             --CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHT
T ss_pred             cccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHh
Confidence            3555788999999999999999999999999999999999988887776665     35688899999999998888764


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          .+++|++|||||+..  +..+.+.++|++++++|+.|++
T Consensus        82 ----~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  120 (249)
T 3f9i_A           82 ----TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANF  120 (249)
T ss_dssp             ----CSCCSEEEECCC-------------CHHHHHHHHTHHHH
T ss_pred             ----cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence                478999999999874  3446788999999999999875

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.88  E-value=2.9e-22  Score=139.19  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=97.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCCCCeeEE-EEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNPAAKVDV-MELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +|+++||||++|||++++++|+++|++|+++ +|+.+..++...++...  +.++.. +.+|++|.++++++++++.+.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR--GSPLVAVLGANLLEAEAATALVHQAAEVL   78 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999998 88888777776666554  345666 8999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  116 (245)
T 2ph3_A           79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVF  116 (245)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHH
Confidence            99999999999864  3457889999999999999865

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.88  E-value=2.5e-22  Score=155.89  Aligned_cols=114  Identities=23%  Similarity=0.266  Sum_probs=95.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc---------chhHHHHHHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM---------AAGRDVKVAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~---------~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      +++++|+++||||++|||+++|+.|+++|++|++++++.         +.+++..+++...  +.++   .+|++|.+++
T Consensus         4 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~--g~~~---~~d~~d~~~~   78 (604)
T 2et6_A            4 VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN--GGVA---VADYNNVLDG   78 (604)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT--TCEE---EEECCCTTCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc--CCeE---EEEcCCHHHH
Confidence            457899999999999999999999999999999998765         5666667777654  3333   3588888889


Q ss_pred             HHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           91 RKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++++++.+++|+||+||||||+..  +..+.+.++|+++|++|+.|+|+
T Consensus        79 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~  128 (604)
T 2et6_A           79 DKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFA  128 (604)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999864  45688999999999999999873

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.87  E-value=3.1e-22  Score=140.82  Aligned_cols=117  Identities=19%  Similarity=0.300  Sum_probs=97.2

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCC---CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRG---VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g---~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      +..++++|+++||||+++||++++++|+++|   ++|++++|+.+..+.+ .++...  +.++.++.+|++|.+++++++
T Consensus        15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~--~~~~~~~~~Dl~~~~~v~~~~   91 (267)
T 1sny_A           15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN--HSNIHILEIDLRNFDAYDKLV   91 (267)
T ss_dssp             -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH--CTTEEEEECCTTCGGGHHHHH
T ss_pred             cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc--CCceEEEEecCCChHHHHHHH
Confidence            4446889999999999999999999999999   9999999998766543 344433  356899999999999999999


Q ss_pred             HHHHhcCC--CccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455           95 SDFTARAL--PLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~~~--~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++.+.++  ++|+||||||+..   +..+.+.++|++.+++|+.+++
T Consensus        92 ~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~  139 (267)
T 1sny_A           92 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI  139 (267)
T ss_dssp             HHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHH
Confidence            99998888  8999999999864   3346789999999999998875

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.87  E-value=3.9e-22  Score=139.68  Aligned_cols=106  Identities=13%  Similarity=0.150  Sum_probs=88.9

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +..+..+|+++||||++|||+++|++|+++|++|++++|+.+...              ...+.+|++|.++++++++++
T Consensus        16 ~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~d~~d~~~v~~~~~~~   81 (251)
T 3orf_A           16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA--------------DHSFTIKDSGEEEIKSVIEKI   81 (251)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS--------------SEEEECSCSSHHHHHHHHHHH
T ss_pred             ccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--------------ccceEEEeCCHHHHHHHHHHH
Confidence            444456899999999999999999999999999999999876532              135689999999999999999


Q ss_pred             HhcCCCccEEEECcccCCC---CCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGT---PFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~---~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++|+||||||+...   ..+.+.++|++.+++|+.|++
T Consensus        82 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~  124 (251)
T 3orf_A           82 NSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAF  124 (251)
T ss_dssp             HTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHH
Confidence            9999999999999998742   446788999999999999875

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.87  E-value=2.1e-21  Score=143.16  Aligned_cols=116  Identities=12%  Similarity=0.012  Sum_probs=96.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHH-CCCEEEEEecCcchhH-----------H-HHHHHHhcCCCCeeEEEEecCCC
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLAL-RGVHVIMADRNMAAGR-----------D-VKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~-~g~~v~~~~r~~~~~~-----------~-~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      ....+|++|||||++|||+++|+.|++ +|++|++++++.+..+           + ....+...  +.++..+.+|++|
T Consensus        43 ~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~--G~~a~~i~~Dvtd  120 (405)
T 3zu3_A           43 IANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK--GLYAKSINGDAFS  120 (405)
T ss_dssp             CTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTS
T ss_pred             cCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc--CCceEEEECCCCC
Confidence            345789999999999999999999999 9999999998765432           1 22233333  5678899999999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccC---------------CCC---------------------CccCHHHHHHHhh
Q 042455           87 LASVRKFASDFTARALPLNILINKAGIC---------------GTP---------------------FMLSKDNIELHFA  130 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~---------------~~~---------------------~~~~~~~~~~~~~  130 (138)
                      .++++++++++.+++|+||+||||||..               .+.                     .+.+.++|+++++
T Consensus       121 ~~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~  200 (405)
T 3zu3_A          121 DEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVA  200 (405)
T ss_dssp             HHHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHH
Confidence            9999999999999999999999999974               233                     4579999999999


Q ss_pred             hcccccc
Q 042455          131 TNHLGAF  137 (138)
Q Consensus       131 ~n~~g~~  137 (138)
                      +|..+.|
T Consensus       201 Vn~~~~~  207 (405)
T 3zu3_A          201 VMGGEDW  207 (405)
T ss_dssp             HHSSHHH
T ss_pred             hhchhHH
Confidence            9988764

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.87  E-value=9e-22  Score=136.77  Aligned_cols=111  Identities=24%  Similarity=0.312  Sum_probs=96.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |++|+++||||+++||++++++|+++|  ++|++++|+.+..+++..    . .+.++.++.+|++|.++++++++++.+
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~----~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   75 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS----I-KDSRVHVLPLTVTCDKSLDTFVSKVGE   75 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT----C-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh----c-cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence            467999999999999999999999999  999999999887655422    1 246789999999999999999999999


Q ss_pred             cCC--CccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RAL--PLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~--~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++  ++|+||||||...   +..+.+.++|++.+++|+.|++
T Consensus        76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~  118 (250)
T 1yo6_A           76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV  118 (250)
T ss_dssp             HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHH
T ss_pred             hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHH
Confidence            888  9999999999864   3456789999999999998875

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.87  E-value=4.1e-22  Score=139.08  Aligned_cols=106  Identities=22%  Similarity=0.337  Sum_probs=88.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++||||++|||+++++.|+++|++|++++|+++++++.. ++      .++.++.+|++|+++++++    .++
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~------~~~~~~~~D~~~~~~~~~~----~~~   71 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY------PGIQTRVLDVTKKKQIDQF----ANE   71 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS------TTEEEEECCTTCHHHHHHH----HHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc------cCceEEEeeCCCHHHHHHH----HHH
Confidence            478999999999999999999999999999999999876554322 11      2578899999999998844    445


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        72 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~  110 (246)
T 2ag5_A           72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMY  110 (246)
T ss_dssp             CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            789999999999864  3457889999999999999875

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.87  E-value=2.2e-22  Score=156.41  Aligned_cols=119  Identities=25%  Similarity=0.285  Sum_probs=86.0

Q ss_pred             hhhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec---------CcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           14 EEVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR---------NMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        14 ~~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r---------~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      ....+.+++++|++|||||++|||+++|+.|+++|++|++++|         +.+.+++...++...  +..+   .+|+
T Consensus         9 ~~~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~--~~~~---~~D~   83 (613)
T 3oml_A            9 SSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA--GGEA---VADY   83 (613)
T ss_dssp             ------CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT--TCCE---EECC
T ss_pred             cCcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh--CCeE---EEEe
Confidence            3344566799999999999999999999999999999999987         666777777777665  3332   4799


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           85 SSLASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|.++++++++++.+++++||+||||||+..  +..+.+.++|++++++|+.|+|
T Consensus        84 ~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~  138 (613)
T 3oml_A           84 NSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSF  138 (613)
T ss_dssp             CCGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999874  4557899999999999999876

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.87  E-value=8.6e-22  Score=152.84  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=94.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||+++|+.|+++|++|+++++..  +++..+++...  +.++..+.+|++  ++.+++++++.+
T Consensus       318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~--g~~~~~~~~Dv~--~~~~~~~~~~~~  391 (604)
T 2et6_A          318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAA--GGEAWPDQHDVA--KDSEAIIKNVID  391 (604)
T ss_dssp             CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHT--TCEEEEECCCHH--HHHHHHHHHHHH
T ss_pred             cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhc--CCeEEEEEcChH--HHHHHHHHHHHH
Confidence            468899999999999999999999999999999998632  34555555544  456777888884  556788999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||+..  +..+++.++|+++|++|+.|+|+
T Consensus       392 ~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~  432 (604)
T 2et6_A          392 KYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFN  432 (604)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHH
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence            9999999999999874  45688999999999999999873

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.87  E-value=1.3e-21  Score=135.94  Aligned_cols=108  Identities=23%  Similarity=0.360  Sum_probs=90.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++.++...++    +  .+.++.+|++|+++++++++    
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~----   72 (244)
T 3d3w_A            3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----P--GIEPVCVDLGDWEATERALG----   72 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHHHHHHHT----
T ss_pred             cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----C--CCCEEEEeCCCHHHHHHHHH----
Confidence            4678999999999999999999999999999999999987766544432    1  24566999999999988876    


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++++|+||||||...  +..+.+.++|++.+++|+.+++
T Consensus        73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  112 (244)
T 3d3w_A           73 SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVI  112 (244)
T ss_dssp             TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHH
Confidence            5689999999999764  3456789999999999999875

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.86  E-value=1.4e-21  Score=135.88  Aligned_cols=103  Identities=23%  Similarity=0.263  Sum_probs=90.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++||||++|||++++++|+++|++|++++|+.++.   .+++     +  +.++.+|+++ ++++++++++.+.+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~-----~--~~~~~~D~~~-~~~~~~~~~~~~~~g~   70 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA---AQSL-----G--AVPLPTDLEK-DDPKGLVKRALEALGG   70 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHH-----T--CEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHhh-----C--cEEEecCCch-HHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999987652   2222     2  6788999999 9999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+||||||...  +..+.+.++|++++++|+.|++
T Consensus        71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  106 (239)
T 2ekp_A           71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAF  106 (239)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            999999999863  4557899999999999999875

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.86  E-value=6.2e-22  Score=137.78  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=90.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +.++|+++||||++|||++++++|+++|++|++++|+++..+            ....++.+|++|+++++++++++.++
T Consensus         4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~   71 (241)
T 1dhr_A            4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKL   71 (241)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999876532            23567899999999999999999998


Q ss_pred             C--CCccEEEECcccCC--CC-CccCHHHHHHHhhhcccccc
Q 042455          101 A--LPLNILINKAGICG--TP-FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~--~~id~lv~~ag~~~--~~-~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +  +++|+||||||+..  +. .+.+.++|++.+++|+.+++
T Consensus        72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~  113 (241)
T 1dhr_A           72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTST  113 (241)
T ss_dssp             HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHH
Confidence            8  79999999999864  33 56788999999999998875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.86  E-value=2.5e-21  Score=134.48  Aligned_cols=108  Identities=24%  Similarity=0.411  Sum_probs=90.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++||||+++||++++++|+++|++|++++|+.+..++...++    +  .+.++.+|++|+++++++++    
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~~~~~~----   72 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----P--GIEPVCVDLGDWDATEKALG----   72 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHHHHHHHT----
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----c--CCCcEEecCCCHHHHHHHHH----
Confidence            4578999999999999999999999999999999999987666544332    1  24566999999999988876    


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        73 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  112 (244)
T 1cyd_A           73 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVF  112 (244)
T ss_dssp             TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHH
Confidence            5689999999999764  3457789999999999999865

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.86  E-value=5.1e-22  Score=137.27  Aligned_cols=105  Identities=21%  Similarity=0.251  Sum_probs=90.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |++|||||++|||+++|++|+++|++|++++|+.+.+++...++     +.++.++.+|+++.++++++++++.+.   +
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~---~   73 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSI---P   73 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSC---C
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhc---C
Confidence            68999999999999999999999999999999988877665544     466889999999999999999887543   3


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        74 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  108 (230)
T 3guy_A           74 STVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAI  108 (230)
T ss_dssp             SEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHH
Confidence            99999999864  4457899999999999999876

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.86  E-value=4.2e-21  Score=142.56  Aligned_cols=114  Identities=13%  Similarity=0.013  Sum_probs=94.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHH-CCCEEEEEecCcchhHH------------HHHHHHhcCCCCeeEEEEecCCCHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLAL-RGVHVIMADRNMAAGRD------------VKVAIVMQNPAAKVDVMELDLSSLA   88 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~-~g~~v~~~~r~~~~~~~------------~~~~l~~~~~~~~~~~~~~D~~~~~   88 (138)
                      ..+|++|||||++|||+++|+.|+. +|++|++++|+.+..++            ..+.+...  +.++..+.+|++|++
T Consensus        59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~--G~~a~~i~~Dvtd~~  136 (422)
T 3s8m_A           59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA--GLYSKSINGDAFSDA  136 (422)
T ss_dssp             SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTSHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc--CCcEEEEEecCCCHH
Confidence            3589999999999999999999999 99999999998654321            22333333  567899999999999


Q ss_pred             HHHHHHHHHHhcC-CCccEEEECcccC---------------CCC---------------------CccCHHHHHHHhhh
Q 042455           89 SVRKFASDFTARA-LPLNILINKAGIC---------------GTP---------------------FMLSKDNIELHFAT  131 (138)
Q Consensus        89 ~~~~~~~~~~~~~-~~id~lv~~ag~~---------------~~~---------------------~~~~~~~~~~~~~~  131 (138)
                      +++++++++.+++ |+||+||||||..               .+.                     .+.+.++|++++++
T Consensus       137 ~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~V  216 (422)
T 3s8m_A          137 ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITV  216 (422)
T ss_dssp             HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHh
Confidence            9999999999999 9999999999872               122                     24689999999999


Q ss_pred             cccccc
Q 042455          132 NHLGAF  137 (138)
Q Consensus       132 n~~g~~  137 (138)
                      |..+.|
T Consensus       217 n~~~~~  222 (422)
T 3s8m_A          217 MGGQDW  222 (422)
T ss_dssp             HSSHHH
T ss_pred             hchhHH
Confidence            987654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.85  E-value=7e-22  Score=137.06  Aligned_cols=104  Identities=11%  Similarity=0.055  Sum_probs=90.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|+++||||++|||++++++|+++|++|++++|+++..+            ....++.+|++|+++++++++++.+.+
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~   68 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSL   68 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999876532            235677899999999999999999888


Q ss_pred             --CCccEEEECcccCC--CC-CccCHHHHHHHhhhcccccc
Q 042455          102 --LPLNILINKAGICG--TP-FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 --~~id~lv~~ag~~~--~~-~~~~~~~~~~~~~~n~~g~~  137 (138)
                        +++|+||||||...  +. .+.+.++|++.+++|+.|++
T Consensus        69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~  109 (236)
T 1ooe_A           69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSA  109 (236)
T ss_dssp             TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence              79999999999763  33 46778999999999999875

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.85  E-value=2.7e-21  Score=147.94  Aligned_cols=113  Identities=19%  Similarity=0.218  Sum_probs=98.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEE-ecCc-------------chhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVH-VIMA-DRNM-------------AAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~-~r~~-------------~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      -.+|++|||||++|||+++|++|+++|++ |+++ +|+.             +.+++...++...  +.++.++.||++|
T Consensus       249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL--GATATVVTCDLTD  326 (525)
T ss_dssp             CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH--TCEEEEEECCTTS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc--CCEEEEEECCCCC
Confidence            36899999999999999999999999996 7888 8883             4566677777665  6789999999999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           87 LASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++++++++. ++++||+||||||+..  +..+.+.++|+++|++|+.|++
T Consensus       327 ~~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~  378 (525)
T 3qp9_A          327 AEAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAAL  378 (525)
T ss_dssp             HHHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHH
Confidence            999999999988 7899999999999874  4557899999999999999875

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.85  E-value=4.4e-21  Score=144.57  Aligned_cols=112  Identities=29%  Similarity=0.347  Sum_probs=93.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++|++|||||++|||+++|++|+++|++|++++|+... ++........    .+.++.+|++|.++++++++++.++
T Consensus       210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~----~~~~~~~Dvtd~~~v~~~~~~~~~~  284 (454)
T 3u0b_A          210 PLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKV----GGTALTLDVTADDAVDKITAHVTEH  284 (454)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHH----TCEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999987532 1222212211    2457899999999999999999999


Q ss_pred             CCC-ccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALP-LNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~-id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++ ||+||||||+..  +..+.+.++|+++|++|+.|++
T Consensus       285 ~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~  324 (454)
T 3u0b_A          285 HGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQ  324 (454)
T ss_dssp             STTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHH
Confidence            976 999999999874  3457899999999999999876

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.85  E-value=4.9e-21  Score=133.43  Aligned_cols=102  Identities=21%  Similarity=0.269  Sum_probs=87.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHH-CCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLAL-RGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~-~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++|++|||||++|||+++|+.|++ .|++|++++|+++..            ...+.++.+|++|+++++++++.+ + 
T Consensus         2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~-~-   67 (244)
T 4e4y_A            2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS------------AENLKFIKADLTKQQDITNVLDII-K-   67 (244)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC------------CTTEEEEECCTTCHHHHHHHHHHT-T-
T ss_pred             CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc------------cccceEEecCcCCHHHHHHHHHHH-H-
Confidence            3578999999999999999999999 788999999876521            234688999999999999999554 3 


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus        68 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~  106 (244)
T 4e4y_A           68 NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSI  106 (244)
T ss_dssp             TCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHH
T ss_pred             hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHH
Confidence            789999999999874  4567899999999999999876

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.84  E-value=1.7e-21  Score=141.39  Aligned_cols=113  Identities=20%  Similarity=0.231  Sum_probs=90.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHh----cCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVM----QNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++|+++|||+++|||+++|++|+++|++|++++|+....+.....+..    ..++.++.++.+|++|.++++++++++.
T Consensus         1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            378999999999999999999999999988888765443332222221    1123578899999999999999999873


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        ++++|+||||||+..  +..+.+.++|+++|++|+.|++
T Consensus        81 --~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~  119 (327)
T 1jtv_A           81 --EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTV  119 (327)
T ss_dssp             --TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             --cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence              589999999999763  4457899999999999999876

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.84  E-value=8.6e-21  Score=151.07  Aligned_cols=113  Identities=22%  Similarity=0.372  Sum_probs=100.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHH-HCCC-EEEEEecC---cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLA-LRGV-HVIMADRN---MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~-~~g~-~v~~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .+|+++|||+++|||+++|++|+ ++|+ +|++++|+   .+.+++..+++...  +.++.++.||++|.++++++++++
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--G~~v~~~~~Dvsd~~~v~~~~~~~  606 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAY--GAEVSLQACDVADRETLAKVLASI  606 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHH
Confidence            58999999999999999999999 7899 69999998   45567777777765  788999999999999999999998


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      .+++ +||+||||||+..  +..+++.++|+++|++|+.|+|+
T Consensus       607 ~~~~-~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~  648 (795)
T 3slk_A          607 PDEH-PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARN  648 (795)
T ss_dssp             CTTS-CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHH
T ss_pred             HHhC-CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHH
Confidence            8776 9999999999984  45579999999999999999874

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.84  E-value=3.1e-21  Score=132.84  Aligned_cols=92  Identities=27%  Similarity=0.343  Sum_probs=81.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+                      +|++|+++++++++++  
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v~~~~~~~--   57 (223)
T 3uce_A            2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDEKSVYHYFETI--   57 (223)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCHHHHHHHHHHH--
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCHHHHHHHHHHh--
Confidence            4578999999999999999999999999999999998754                      8999999999998865  


Q ss_pred             cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        +++|+||||||...   +..+.+.++|++.+++|+.|++
T Consensus        58 --g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~   96 (223)
T 3uce_A           58 --GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAV   96 (223)
T ss_dssp             --CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             --CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHH
Confidence              79999999999762   4567899999999999999876

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.84  E-value=2.1e-20  Score=142.03  Aligned_cols=111  Identities=18%  Similarity=0.346  Sum_probs=97.2

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc---chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM---AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +|++|||||++|||++++++|+++|+ +|++++|+.   +..+++..++...  +.++.++.||++|.++++++++++.+
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~i~~  316 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQL--GVRVTIAACDAADREALAALLAELPE  316 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTCCT
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            59999999999999999999999999 899999964   3456666777665  67899999999999999999999877


Q ss_pred             cCCCccEEEECcccC-C--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGIC-G--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~-~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      . +++|+||||||+. .  +..+.+.++|+++|++|+.|++
T Consensus       317 ~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~  356 (496)
T 3mje_A          317 D-APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAAR  356 (496)
T ss_dssp             T-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHH
T ss_pred             h-CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence            6 7999999999987 3  4567899999999999999875

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.83  E-value=3.2e-20  Score=155.78  Aligned_cols=119  Identities=21%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             CCCCCCCEEEEeCCCCc-hHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCC--CCeeEEEEecCCCHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSG-IGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNP--AAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~-iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .+++++|++|||||++| ||+++|+.|+++|++|+++ .|+.+..++..+++....+  +.++.++.+|++|.+++++++
T Consensus       670 ~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv  749 (1887)
T 2uv8_A          670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI  749 (1887)
T ss_dssp             CBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence            44688999999999998 9999999999999999998 5777777666666543321  467899999999999999999


Q ss_pred             HHHHhc-----CC-CccEEEECcccCC---CCCccC--HHHHHHHhhhcccccc
Q 042455           95 SDFTAR-----AL-PLNILINKAGICG---TPFMLS--KDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~-----~~-~id~lv~~ag~~~---~~~~~~--~~~~~~~~~~n~~g~~  137 (138)
                      +++.++     +| +||+||||||+..   +..+.+  .++|+++|++|+.|++
T Consensus       750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~  803 (1887)
T 2uv8_A          750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMM  803 (1887)
T ss_dssp             HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHH
Confidence            999988     66 9999999999874   334667  8999999999999875

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.83  E-value=5.2e-20  Score=154.33  Aligned_cols=119  Identities=22%  Similarity=0.217  Sum_probs=100.0

Q ss_pred             CCCCCCCEEEEeCCCCc-hHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSG-IGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQN--PAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~-iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .+++++|++|||||++| ||+++|+.|+++|++|++++ |+.+...+..+++....  .+.++.++.||++|.+++++++
T Consensus       647 ~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv  726 (1878)
T 2uv9_A          647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV  726 (1878)
T ss_dssp             CBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence            45688999999999998 99999999999999999985 66666655555553221  1567999999999999999999


Q ss_pred             HHHHhc---CC-CccEEEECcccCC---CCCccC--HHHHHHHhhhcccccc
Q 042455           95 SDFTAR---AL-PLNILINKAGICG---TPFMLS--KDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~---~~-~id~lv~~ag~~~---~~~~~~--~~~~~~~~~~n~~g~~  137 (138)
                      +++.++   +| +||+||||||+..   +..+.+  .++|+++|++|+.|++
T Consensus       727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~  778 (1878)
T 2uv9_A          727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLL  778 (1878)
T ss_dssp             HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHH
Confidence            999988   88 9999999999873   345677  8999999999999875

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.83  E-value=5.7e-21  Score=133.87  Aligned_cols=105  Identities=14%  Similarity=0.114  Sum_probs=87.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||++|||+++++.|+++|++|++++|+.++.++... +...  +.++..+     |.++++++++++.++++++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~--~~~~~~~-----d~~~v~~~~~~~~~~~g~i   73 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET--YPQLKPM-----SEQEPAELIEAVTSAYGQV   73 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH--CTTSEEC-----CCCSHHHHHHHHHHHHSCC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc--CCcEEEE-----CHHHHHHHHHHHHHHhCCC
Confidence            789999999999999999999999999999999887766554 5443  3334433     6678888899998889999


Q ss_pred             cEEEECcccC-C--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGIC-G--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~-~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+||||||+. .  +..+.+.++|++++++|+.|++
T Consensus        74 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~  109 (254)
T 1zmt_A           74 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPF  109 (254)
T ss_dssp             CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             CEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            9999999986 3  3457899999999999999876

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.83  E-value=1e-19  Score=135.57  Aligned_cols=114  Identities=15%  Similarity=0.021  Sum_probs=93.5

Q ss_pred             CCCCEEEEeCCCCchHHH--HHHHHHHCCCEEEEEecCcchh------------HHHHHHHHhcCCCCeeEEEEecCCCH
Q 042455           22 AAGVTAIVTGASSGIGAE--TTRVLALRGVHVIMADRNMAAG------------RDVKVAIVMQNPAAKVDVMELDLSSL   87 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~--~a~~l~~~g~~v~~~~r~~~~~------------~~~~~~l~~~~~~~~~~~~~~D~~~~   87 (138)
                      ..+|++|||||++|||++  +++.|+++|++|++++|+.+..            +...+.....  +.++..+.+|++|.
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dvtd~  135 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK--GLVAKNFIEDAFSN  135 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc--CCcEEEEEeeCCCH
Confidence            679999999999999999  9999999999999999975442            2222223332  56789999999999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECcccC---------------CCC---------------------CccCHHHHHHHhhh
Q 042455           88 ASVRKFASDFTARALPLNILINKAGIC---------------GTP---------------------FMLSKDNIELHFAT  131 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag~~---------------~~~---------------------~~~~~~~~~~~~~~  131 (138)
                      ++++++++++.+++|+||+||||||..               .+.                     .+.+.++|+.++++
T Consensus       136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v  215 (418)
T 4eue_A          136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV  215 (418)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence            999999999999999999999999974               122                     24589999999999


Q ss_pred             cccccc
Q 042455          132 NHLGAF  137 (138)
Q Consensus       132 n~~g~~  137 (138)
                      |..+.|
T Consensus       216 n~~~~~  221 (418)
T 4eue_A          216 MGGEDW  221 (418)
T ss_dssp             HSSHHH
T ss_pred             hhHHHH
Confidence            977554

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.83  E-value=8.9e-22  Score=142.82  Aligned_cols=115  Identities=14%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             CCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcc---------hhHHHHHHHHh-cCCCCeeEEEEecCCCH--H
Q 042455           23 AGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMA---------AGRDVKVAIVM-QNPAAKVDVMELDLSSL--A   88 (138)
Q Consensus        23 ~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~---------~~~~~~~~l~~-~~~~~~~~~~~~D~~~~--~   88 (138)
                      .+|+++|||+++  |||+++|++|+++|++|+++++++.         +.+........ ......+..+.+|+++.  +
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            378999999975  9999999999999999998877642         11111111111 11123478889999888  7


Q ss_pred             ------------------HHHHHHHHHHhcCCCccEEEECcccC----CCCCccCHHHHHHHhhhcccccc
Q 042455           89 ------------------SVRKFASDFTARALPLNILINKAGIC----GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        89 ------------------~~~~~~~~~~~~~~~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                                        +++++++++.+++++||+||||||+.    .+..+.+.++|+++|++|+.|++
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~  151 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLI  151 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHH
Confidence                              99999999999999999999999974    34557899999999999999986

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.6e-20  Score=153.13  Aligned_cols=119  Identities=20%  Similarity=0.167  Sum_probs=100.3

Q ss_pred             CCCCCCCEEEEeCCCCc-hHHHHHHHHHHCCCEEEEE-ecCcchhHHHHHHHHhcCC--CCeeEEEEecCCCHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSG-IGAETTRVLALRGVHVIMA-DRNMAAGRDVKVAIVMQNP--AAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~-iG~~~a~~l~~~g~~v~~~-~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .+++++|++|||||++| ||+++|+.|+++|++|+++ +|+.+.+++..+++....+  +.++.++.+|++|.+++++++
T Consensus       471 ~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLV  550 (1688)
T 2pff_A          471 XVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI  550 (1688)
T ss_dssp             CCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHH
T ss_pred             ccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHH
Confidence            34678999999999998 9999999999999999998 6777666666666543322  467899999999999999999


Q ss_pred             HHHHhc-----CC-CccEEEECcccCC---CCCccC--HHHHHHHhhhcccccc
Q 042455           95 SDFTAR-----AL-PLNILINKAGICG---TPFMLS--KDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~-----~~-~id~lv~~ag~~~---~~~~~~--~~~~~~~~~~n~~g~~  137 (138)
                      +++.++     +| +||+||||||+..   +..+.+  .++|+++|++|+.|++
T Consensus       551 e~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~  604 (1688)
T 2pff_A          551 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMM  604 (1688)
T ss_dssp             HHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHH
Confidence            999988     77 9999999999863   345667  8999999999999875

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.82  E-value=1.2e-20  Score=135.96  Aligned_cols=118  Identities=18%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             CCCCCCEEEEeCC--CCchHHHHHHHHHHCCCEEEEEecCcch------hH-HHHHHHHhcCCCC---eeEEEEec----
Q 042455           20 IDAAGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNMAA------GR-DVKVAIVMQNPAA---KVDVMELD----   83 (138)
Q Consensus        20 ~~~~~k~~litG~--~~~iG~~~a~~l~~~g~~v~~~~r~~~~------~~-~~~~~l~~~~~~~---~~~~~~~D----   83 (138)
                      +++++|+++||||  ++|||+++|+.|+++|++|++++|++..      .. ....++.....+.   .+.++.+|    
T Consensus         5 ~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (315)
T 2o2s_A            5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFD   84 (315)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCS
T ss_pred             ccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccc
Confidence            4578999999999  8999999999999999999999976410      00 0011111111111   02334443    


Q ss_pred             --------CC--------CHHHHHHHHHHHHhcCCCccEEEECcccC----CCCCccCHHHHHHHhhhcccccc
Q 042455           84 --------LS--------SLASVRKFASDFTARALPLNILINKAGIC----GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        84 --------~~--------~~~~~~~~~~~~~~~~~~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                              ++        |+++++++++++.+++|++|+||||||+.    .+..+.+.++|++++++|+.|++
T Consensus        85 ~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  158 (315)
T 2o2s_A           85 KPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFV  158 (315)
T ss_dssp             STTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             ccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHH
Confidence                    33        25689999999999999999999999975    24457899999999999999876

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.82  E-value=2.9e-21  Score=134.62  Aligned_cols=108  Identities=20%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|++|||||++|||+++|++|++ |++|++++|+.+..++...       ...+.++.+|+++.+. ...+.+..++
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-------~~~~~~~~~D~~~~~~-~~~~~~~~~~   72 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-------IEGVEPIESDIVKEVL-EEGGVDKLKN   72 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-------STTEEEEECCHHHHHH-TSSSCGGGTT
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-------hcCCcceecccchHHH-HHHHHHHHHh
Confidence            57899999999999999999999988 8999999998877655432       1347889999998877 5555556677


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..  +..+.+.++|++.+++|+.|++
T Consensus        73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~  111 (245)
T 3e9n_A           73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPA  111 (245)
T ss_dssp             CSCCSEEEECC----------CHHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHH
Confidence            899999999999874  3446788999999999999875

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.81  E-value=1.7e-20  Score=130.71  Aligned_cols=103  Identities=15%  Similarity=0.104  Sum_probs=86.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEE-e--cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMA-D--RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~-~--r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +|+++||||++|||+++++.|+++|++|+++ +  |+.+.+++...++    .+.       |+.|.++++++++++.++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~----~~~-------~~~~~~~v~~~~~~~~~~   69 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN----PGT-------IALAEQKPERLVDATLQH   69 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS----TTE-------EECCCCCGGGHHHHHGGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh----CCC-------cccCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999 6  9887776655443    122       333778889999999999


Q ss_pred             CCCccEEEECcccCC-----CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG-----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~-----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||||+..     +..+.+.++|++++++|+.|++
T Consensus        70 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~  111 (244)
T 1zmo_A           70 GEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPI  111 (244)
T ss_dssp             SSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHH
T ss_pred             cCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHH
Confidence            999999999999763     3457899999999999999876

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.81  E-value=3.6e-20  Score=133.69  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=83.5

Q ss_pred             CCCCCCEEEEeCC--CCchHHHHHHHHHHCCCEEEEEecCc-----------chhHH-----------HHHHHHhcCCC-
Q 042455           20 IDAAGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNM-----------AAGRD-----------VKVAIVMQNPA-   74 (138)
Q Consensus        20 ~~~~~k~~litG~--~~~iG~~~a~~l~~~g~~v~~~~r~~-----------~~~~~-----------~~~~l~~~~~~-   74 (138)
                      +++++|++|||||  ++|||+++|+.|+++|++|++++|++           +++++           ..+++...... 
T Consensus         5 ~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (319)
T 2ptg_A            5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDL   84 (319)
T ss_dssp             CCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccc
Confidence            4578999999999  89999999999999999999998752           12111           12222211000 


Q ss_pred             CeeEEEEec------------CCC--------HHHHHHHHHHHHhcCCCccEEEECcccC----CCCCccCHHHHHHHhh
Q 042455           75 AKVDVMELD------------LSS--------LASVRKFASDFTARALPLNILINKAGIC----GTPFMLSKDNIELHFA  130 (138)
Q Consensus        75 ~~~~~~~~D------------~~~--------~~~~~~~~~~~~~~~~~id~lv~~ag~~----~~~~~~~~~~~~~~~~  130 (138)
                      ....++.+|            ++|        +++++++++++.++++++|+||||||+.    .+..+.+.++|+++|+
T Consensus        85 ~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~  164 (319)
T 2ptg_A           85 VFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVS  164 (319)
T ss_dssp             CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHH
T ss_pred             cccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHh
Confidence            002334443            333        4589999999999999999999999975    2445789999999999


Q ss_pred             hcccccc
Q 042455          131 TNHLGAF  137 (138)
Q Consensus       131 ~n~~g~~  137 (138)
                      +|+.|++
T Consensus       165 vN~~g~~  171 (319)
T 2ptg_A          165 SSSYSFV  171 (319)
T ss_dssp             HHTHHHH
T ss_pred             HhhHHHH
Confidence            9999876

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.81  E-value=1.5e-19  Score=137.32  Aligned_cols=113  Identities=26%  Similarity=0.379  Sum_probs=97.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcc---hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMA---AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..++++|||||++|||.+++++|+++|+ +|++++|+..   ..+++..++...  +.++.++.||++|.+++.++++++
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHHHH
Confidence            3579999999999999999999999999 5999999875   345666666654  578999999999999999999998


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ..++++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       302 -~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~  342 (486)
T 2fr1_A          302 -GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGAR  342 (486)
T ss_dssp             -CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHH
T ss_pred             -HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHH
Confidence             56789999999999874  3447899999999999998875

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.80  E-value=7.8e-20  Score=127.86  Aligned_cols=104  Identities=20%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+..++++|+++||||++|||+++++.|+++|++|++++|+++..+    ++     + .+.++ +|+  .+++++++++
T Consensus        12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----~~-----~-~~~~~-~D~--~~~~~~~~~~   78 (249)
T 1o5i_A           12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RS-----G-HRYVV-CDL--RKDLDLLFEK   78 (249)
T ss_dssp             ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HT-----C-SEEEE-CCT--TTCHHHHHHH
T ss_pred             hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH----hh-----C-CeEEE-eeH--HHHHHHHHHH
Confidence            3445688999999999999999999999999999999999863222    11     2 46667 999  5567777766


Q ss_pred             HHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +    .++|+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        79 ~----~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~  117 (249)
T 1o5i_A           79 V----KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMI  117 (249)
T ss_dssp             S----CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             h----cCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            5    38999999999764  3457899999999999998875

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.80  E-value=3.9e-20  Score=132.24  Aligned_cols=117  Identities=16%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             CCCCCCEEEEeCCC--CchHHHHHHHHHHCCCEEEEEecCcch-----------hHHHHHHHHhcCCCCeeEEEEec---
Q 042455           20 IDAAGVTAIVTGAS--SGIGAETTRVLALRGVHVIMADRNMAA-----------GRDVKVAIVMQNPAAKVDVMELD---   83 (138)
Q Consensus        20 ~~~~~k~~litG~~--~~iG~~~a~~l~~~g~~v~~~~r~~~~-----------~~~~~~~l~~~~~~~~~~~~~~D---   83 (138)
                      +++++|+++||||+  +|||+++|+.|+++|++|++++|++..           +++. .++...........+.+|   
T Consensus         4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   82 (297)
T 1d7o_A            4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAVF   82 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTTC
T ss_pred             cccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhh-hhhccccccccccccccceec
Confidence            45789999999999  999999999999999999999875311           1111 111000000112334443   


Q ss_pred             -----CC----C--------HHHHHHHHHHHHhcCCCccEEEECcccC----CCCCccCHHHHHHHhhhcccccc
Q 042455           84 -----LS----S--------LASVRKFASDFTARALPLNILINKAGIC----GTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        84 -----~~----~--------~~~~~~~~~~~~~~~~~id~lv~~ag~~----~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                           ++    |        +++++++++++.++++++|+||||||+.    .+..+.+.++|++++++|+.|++
T Consensus        83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~  157 (297)
T 1d7o_A           83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFV  157 (297)
T ss_dssp             CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHH
Confidence                 32    2        5689999999999999999999999974    24457899999999999999876

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.80  E-value=1.1e-19  Score=125.88  Aligned_cols=99  Identities=25%  Similarity=0.361  Sum_probs=84.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++||||+++||++++++|+++|++|++++|+.+ .             ..+.++.+|++|+++++++++++ +++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~-~~~~~   66 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARA-QEEAP   66 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHH-HHHSC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHH-HhhCC
Confidence            689999999999999999999999999999999865 1             12478899999999999999999 78899


Q ss_pred             ccEEEECcccCCC--CCc----cCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGT--PFM----LSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~--~~~----~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|||||....  ..+    .+.++|++.+++|+.+++
T Consensus        67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  106 (242)
T 1uay_A           67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTF  106 (242)
T ss_dssp             EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHH
T ss_pred             ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHH
Confidence            9999999998642  223    345599999999998875

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.78  E-value=5.5e-19  Score=153.61  Aligned_cols=116  Identities=17%  Similarity=0.128  Sum_probs=93.7

Q ss_pred             CCCCCCEEEEeCCCCc-hHHHHHHHHHHCCCEEEEEecCcch-----hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSG-IGAETTRVLALRGVHVIMADRNMAA-----GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        20 ~~~~~k~~litG~~~~-iG~~~a~~l~~~g~~v~~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      ..++||++|||||++| ||+++|+.|+++|++|++++|+.+.     ++++..++...  +.++..+++|++|.++++++
T Consensus      2132 ~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~--G~~~~~v~~Dvtd~~~v~~l 2209 (3089)
T 3zen_D         2132 XXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARF--DATLWVVPANMASYSDIDKL 2209 (3089)
T ss_dssp             CCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCT--TCEEEEEECCTTCHHHHHHH
T ss_pred             ccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhc--CCeEEEEEecCCCHHHHHHH
Confidence            3489999999999999 9999999999999999999998776     45555554332  56789999999999999999


Q ss_pred             HHHHHh----cCCCccEEEECcccC-------CCCCccCHHHHHHH----hhhcccccc
Q 042455           94 ASDFTA----RALPLNILINKAGIC-------GTPFMLSKDNIELH----FATNHLGAF  137 (138)
Q Consensus        94 ~~~~~~----~~~~id~lv~~ag~~-------~~~~~~~~~~~~~~----~~~n~~g~~  137 (138)
                      ++++.+    ++|+||+||||||+.       ....+.+.++|++.    +++|+.+++
T Consensus      2210 v~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~ 2268 (3089)
T 3zen_D         2210 VEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQ 2268 (3089)
T ss_dssp             HHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHH
T ss_pred             HHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999998    899999999999982       12223345555555    788877654

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.78  E-value=2.4e-18  Score=131.26  Aligned_cols=108  Identities=20%  Similarity=0.274  Sum_probs=93.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcc---hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMA---AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+|++|||||++|||.+++++|+++|+ +|++++|+..   ..+++..++...  +.++.++.||++|.+++.+++++  
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~--  333 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVTA--  333 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHhc--
Confidence            579999999999999999999999999 6999999864   355666666654  67899999999999999999887  


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         +++|+||||||+..  +..+.+.++|++++++|+.|++
T Consensus       334 ---~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~  371 (511)
T 2z5l_A          334 ---YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAE  371 (511)
T ss_dssp             ---SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             ---CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHH
Confidence               68999999999874  3457899999999999998865

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.77  E-value=6.8e-19  Score=119.32  Aligned_cols=100  Identities=23%  Similarity=0.373  Sum_probs=83.0

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||+++||++++++|+++  +|++++|+++..++...++.     .  .++.+|++|++++++++++    ++++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~-----~--~~~~~D~~~~~~~~~~~~~----~~~i   67 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG-----A--RALPADLADELEAKALLEE----AGPL   67 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT-----C--EECCCCTTSHHHHHHHHHH----HCSE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc-----C--cEEEeeCCCHHHHHHHHHh----cCCC
Confidence            57999999999999999999998  99999999877766555441     2  7789999999999999987    5799


Q ss_pred             cEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+||||||...  +..+.+.++|++.+++|+.|++
T Consensus        68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~  102 (207)
T 2yut_A           68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAA  102 (207)
T ss_dssp             EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHH
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHH
Confidence            99999999764  3446788999999999998875

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.77  E-value=2.4e-18  Score=116.40  Aligned_cols=88  Identities=17%  Similarity=0.317  Sum_probs=78.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+++||++++++|+ +|++|++++|+.+                   .+.+|++++++++++++++    +++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~----~~~d   60 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQV----GKVD   60 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHH----CCEE
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHh----CCCC
Confidence            79999999999999999999 9999999999764                   3689999999999999875    7899


Q ss_pred             EEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|||||...  +..+.+.++|++.+++|+.+++
T Consensus        61 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~   94 (202)
T 3d7l_A           61 AIVSATGSATFSPLTELTPEKNAVTISSKLGGQI   94 (202)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHhhccHHHH
Confidence            9999999763  3456789999999999998865

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.75  E-value=1.6e-18  Score=150.04  Aligned_cols=113  Identities=19%  Similarity=0.160  Sum_probs=85.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchh---HHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAG---RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~---~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+|+++||||++|||+++|++|+++|++ |++++|+..+.   .+..+++...  +.++.++.||++|.++++++++++.
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQ--GVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHT--TCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhC--CCEEEEEecCCCCHHHHHHHHHHHH
Confidence            6899999999999999999999999996 88899986554   3444555443  6789999999999999999999986


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                       ++++||+||||||+..  +..+++.++|++++++|+.|+|+
T Consensus      1961 -~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~ 2001 (2512)
T 2vz8_A         1961 -QLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTAN 2001 (2512)
T ss_dssp             -HHSCEEEEEECCCC----------------CTTTTHHHHHH
T ss_pred             -hcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHH
Confidence             4799999999999874  45678999999999999999863

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.72  E-value=2.8e-18  Score=120.94  Aligned_cols=92  Identities=20%  Similarity=0.240  Sum_probs=78.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|+++||||+|+||+++++.|+++|++|++++|++.+..           +..+.++.+|++|.+++.++++      
T Consensus         1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~------   63 (267)
T 3rft_A            1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVA------   63 (267)
T ss_dssp             CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHT------
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHc------
Confidence            34689999999999999999999999999999999875532           3568899999999999988876      


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|+||||||..      +.+.|++.+++|+.|++
T Consensus        64 -~~D~vi~~Ag~~------~~~~~~~~~~~N~~g~~   92 (267)
T 3rft_A           64 -GCDGIVHLGGIS------VEKPFEQILQGNIIGLY   92 (267)
T ss_dssp             -TCSEEEECCSCC------SCCCHHHHHHHHTHHHH
T ss_pred             -CCCEEEECCCCc------CcCCHHHHHHHHHHHHH
Confidence             589999999973      34567889999998875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.71  E-value=1.4e-17  Score=115.14  Aligned_cols=97  Identities=18%  Similarity=0.276  Sum_probs=74.0

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCee-EEEEecCCCHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV-DVMELDLSSLASVRKFASD   96 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~D~~~~~~~~~~~~~   96 (138)
                      ....+++|+++||||+|+||.+++++|+++|++|++++|++++.+++..        ..+ .++.+|++         +.
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~---------~~   77 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLE---------ED   77 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTT---------SC
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccH---------HH
Confidence            3456889999999999999999999999999999999999887655332        246 78899998         33


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+.++++|+||||||...      .++|++.+++|+.+++
T Consensus        78 ~~~~~~~~D~vi~~ag~~~------~~~~~~~~~~n~~~~~  112 (236)
T 3e8x_A           78 FSHAFASIDAVVFAAGSGP------HTGADKTILIDLWGAI  112 (236)
T ss_dssp             CGGGGTTCSEEEECCCCCT------TSCHHHHHHTTTHHHH
T ss_pred             HHHHHcCCCEEEECCCCCC------CCCccccchhhHHHHH
Confidence            4445568999999999743      2457888999987754

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.69  E-value=5.3e-18  Score=118.56  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=74.4

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||++|||+++++.|+++|++|++++|++++.+.               .+.+|+++.++++++++++   .+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------------~~~~Dl~~~~~v~~~~~~~---~~~i   63 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------------DLSTAEGRKQAIADVLAKC---SKGM   63 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHTTC---TTCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------------ccccCCCCHHHHHHHHHHh---CCCC
Confidence            689999999999999999999999999999998765321               1578999999988887642   3899


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+||||||+..+.     +.|++++++|+.|++
T Consensus        64 d~lv~~Ag~~~~~-----~~~~~~~~~N~~g~~   91 (257)
T 1fjh_A           64 DGLVLCAGLGPQT-----KVLGNVVSVNYFGAT   91 (257)
T ss_dssp             SEEEECCCCCTTC-----SSHHHHHHHHTHHHH
T ss_pred             CEEEECCCCCCCc-----ccHHHHHHHhhHHHH
Confidence            9999999975421     238899999998875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.68  E-value=5.5e-17  Score=117.20  Aligned_cols=105  Identities=16%  Similarity=0.213  Sum_probs=81.3

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+..+++++++|||||+|+||.++++.|+++|++|++++|+.....+..    ..  -..+.++.+|++|.+++.+++++
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~--l~~v~~~~~Dl~d~~~~~~~~~~   86 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL----PP--VAGLSVIEGSVTDAGLLERAFDS   86 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGS----CS--CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhh----hc--cCCceEEEeeCCCHHHHHHHHhh
Confidence            3445688999999999999999999999999999999999754422111    11  13578899999999999999887


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +     ++|+||||||.....   +.+++.  +++|+.+++
T Consensus        87 ~-----~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~  117 (330)
T 2pzm_A           87 F-----KPTHVVHSAAAYKDP---DDWAED--AATNVQGSI  117 (330)
T ss_dssp             H-----CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHH
T ss_pred             c-----CCCEEEECCccCCCc---cccChh--HHHHHHHHH
Confidence            5     699999999975432   445555  888887764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.68  E-value=6.1e-17  Score=116.95  Aligned_cols=107  Identities=19%  Similarity=0.199  Sum_probs=82.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|++|||||+|+||.++++.|+++|++|++++|+.+....  ..+.......++.++.+|++|.+++.++++.+    
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----   74 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEFSNIIRTIEKV----   74 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH----
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCHHHHHHHHHhc----
Confidence            457899999999999999999999999999999998765432  11222211346888999999999999998876    


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|+|||+||...  ...+.+++.+.+++|+.|++
T Consensus        75 -~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~  107 (345)
T 2z1m_A           75 -QPDEVYNLAAQSF--VGVSFEQPILTAEVDAIGVL  107 (345)
T ss_dssp             -CCSEEEECCCCCC--HHHHTTSHHHHHHHHTHHHH
T ss_pred             -CCCEEEECCCCcc--hhhhhhCHHHHHHHHHHHHH
Confidence             6899999999642  12234567888999988764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.67  E-value=1.3e-16  Score=115.26  Aligned_cols=107  Identities=21%  Similarity=0.186  Sum_probs=82.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .++++|||||+|+||.++++.|+++|++|++++|+.+...+....+.... +..+.++.+|++|.+++.+++++     +
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~-----~   77 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDA-----H   77 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHH-----S
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhc-----c
Confidence            46799999999999999999999999999999998776655555554332 35688899999999999999886     4


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+|||+||....  ....+...+.+++|+.+++
T Consensus        78 ~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~  110 (341)
T 3enk_A           78 PITAAIHFAALKAV--GESVAKPIEYYRNNLDSLL  110 (341)
T ss_dssp             CCCEEEECCCCCCH--HHHHHCHHHHHHHHHHHHH
T ss_pred             CCcEEEECcccccc--CccccChHHHHHHHHHHHH
Confidence            79999999997531  1123334566777776653

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.66  E-value=1.9e-15  Score=110.94  Aligned_cols=93  Identities=14%  Similarity=0.070  Sum_probs=78.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHH-HCCCEEEEEecCcchh------------HHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLA-LRGVHVIMADRNMAAG------------RDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~-~~g~~v~~~~r~~~~~------------~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      ....+|++||||+++|||++++..|+ ..|+.++++++..+..            ....+.+++.  +.+...+.||+++
T Consensus        46 ~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~--G~~a~~i~~Dv~d  123 (401)
T 4ggo_A           46 GAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE--GLYSVTIDGDAFS  123 (401)
T ss_dssp             TSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH--TCCEEEEESCTTS
T ss_pred             ccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc--CCCceeEeCCCCC
Confidence            34678999999999999999999998 6799999988765422            2233344444  7889999999999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           87 LASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      .+.++++++++++++|+||+||||++..
T Consensus       124 ~e~i~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          124 DEIKAQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence            9999999999999999999999999975

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.65  E-value=3.1e-16  Score=114.24  Aligned_cols=104  Identities=16%  Similarity=0.178  Sum_probs=82.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHC-CC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALR-GV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~-g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++|++|||||+|+||.+++++|+++ |+ +|++++|++.+...+...+.    ...+.++.+|++|.+++.++++   
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~---   90 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYALE---   90 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHHTT---
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHh---
Confidence            377899999999999999999999999 98 99999999877666555442    3468899999999999877764   


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          ++|+|||+||....  ........+.+++|+.|++
T Consensus        91 ----~~D~Vih~Aa~~~~--~~~~~~~~~~~~~Nv~gt~  123 (344)
T 2gn4_A           91 ----GVDICIHAAALKHV--PIAEYNPLECIKTNIMGAS  123 (344)
T ss_dssp             ----TCSEEEECCCCCCH--HHHHHSHHHHHHHHHHHHH
T ss_pred             ----cCCEEEECCCCCCC--CchhcCHHHHHHHHHHHHH
Confidence                58999999997531  1122345678888988764

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.64  E-value=1.3e-16  Score=116.50  Aligned_cols=108  Identities=17%  Similarity=0.170  Sum_probs=80.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHH--CCCEEEEEecCcchhHHHH------HHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLAL--RGVHVIMADRNMAAGRDVK------VAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~--~g~~v~~~~r~~~~~~~~~------~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      .++++++++|||||+|+||.++++.|++  .|++|++++|+........      ...... .+..+.++.+|++|.+++
T Consensus         5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~   83 (362)
T 3sxp_A            5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL-IGFKGEVIAADINNPLDL   83 (362)
T ss_dssp             SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG-TTCCSEEEECCTTCHHHH
T ss_pred             chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc-cccCceEEECCCCCHHHH
Confidence            4567899999999999999999999999  8999999999765211000      000111 134678999999999998


Q ss_pred             HHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           91 RKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++      ...++|+|||+||...    .+.+++...+++|+.|++
T Consensus        84 ~~~------~~~~~D~vih~A~~~~----~~~~~~~~~~~~Nv~gt~  120 (362)
T 3sxp_A           84 RRL------EKLHFDYLFHQAAVSD----TTMLNQELVMKTNYQAFL  120 (362)
T ss_dssp             HHH------TTSCCSEEEECCCCCG----GGCCCHHHHHHHHTHHHH
T ss_pred             HHh------hccCCCEEEECCccCC----ccccCHHHHHHHHHHHHH
Confidence            876      3358999999999533    244567888999988764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.62  E-value=2.7e-16  Score=112.09  Aligned_cols=108  Identities=17%  Similarity=0.199  Sum_probs=85.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++|||+++|+|+++++.|+++|++|++++|+.++++++.+++...   ..+.++.+|+++.+++++++++   
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~---  188 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKG---  188 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTT---
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEecCCCHHHHHHHHHh---
Confidence            4578999999999999999999999999999999999988888777766442   1245678999999987766553   


Q ss_pred             cCCCccEEEECcccCC-C--CCccCH-HHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG-T--PFMLSK-DNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~-~--~~~~~~-~~~~~~~~~n~~g~~  137 (138)
                          +|+||||+|... +  ..+.+. +.|..++++|+.+++
T Consensus       189 ----~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~  226 (287)
T 1lu9_A          189 ----AHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL  226 (287)
T ss_dssp             ----CSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred             ----CCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence                799999998642 1  113343 666779999998875

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.62  E-value=3.7e-16  Score=112.72  Aligned_cols=104  Identities=12%  Similarity=0.090  Sum_probs=80.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEE-EecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM-ELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++++|||||+|+||.++++.|+++|++|++++|+.+..+.+...+.... +.++.++ .+|++|.+++.++++    
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~----   82 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIK----   82 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTT----
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHc----
Confidence            4678999999999999999999999999999999998777665554443322 2457777 799999887766553    


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         ++|+|||+||.....     +++.+.+++|+.|++
T Consensus        83 ---~~d~vih~A~~~~~~-----~~~~~~~~~n~~g~~  112 (342)
T 1y1p_A           83 ---GAAGVAHIASVVSFS-----NKYDEVVTPAIGGTL  112 (342)
T ss_dssp             ---TCSEEEECCCCCSCC-----SCHHHHHHHHHHHHH
T ss_pred             ---CCCEEEEeCCCCCCC-----CCHHHHHHHHHHHHH
Confidence               689999999975421     245678888887754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.62  E-value=4.7e-16  Score=112.87  Aligned_cols=110  Identities=16%  Similarity=0.081  Sum_probs=83.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCC---CeeEEEEecCCCHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPA---AKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~---~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      .+.++++++|||||+|.||.++++.|+++|++|++++|+..........+....+.   ..+.++.+|++|.+++.++++
T Consensus        20 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   99 (351)
T 3ruf_A           20 QLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK   99 (351)
T ss_dssp             HHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred             hCCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence            34567899999999999999999999999999999999876555544444432211   468899999999998887765


Q ss_pred             HHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                             ++|+|||+||....  ..+.+++...+++|+.++.
T Consensus       100 -------~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~  132 (351)
T 3ruf_A          100 -------GVDHVLHQAALGSV--PRSIVDPITTNATNITGFL  132 (351)
T ss_dssp             -------TCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHH
T ss_pred             -------CCCEEEECCccCCc--chhhhCHHHHHHHHHHHHH
Confidence                   68999999996431  2334556677888877653

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.62  E-value=6.7e-16  Score=112.40  Aligned_cols=106  Identities=17%  Similarity=0.069  Sum_probs=84.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +.++++|||||+|+||.+++++|+++|++|++++|+.+........+. .  ...+.++.+|++|.+++.++++.+    
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~~~~~~~~~----   79 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR-V--ADGMQSEIGDIRDQNKLLESIREF----   79 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT-T--TTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc-c--CCceEEEEccccCHHHHHHHHHhc----
Confidence            567899999999999999999999999999999998765544333322 1  346788999999999999998875    


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|+|||+||..  ....+.+++.+.+++|+.|++
T Consensus        80 -~~d~vih~A~~~--~~~~~~~~~~~~~~~n~~~~~  112 (357)
T 1rkx_A           80 -QPEIVFHMAAQP--LVRLSYSEPVETYSTNVMGTV  112 (357)
T ss_dssp             -CCSEEEECCSCC--CHHHHHHCHHHHHHHHTHHHH
T ss_pred             -CCCEEEECCCCc--ccccchhCHHHHHHHHHHHHH
Confidence             689999999952  223345667888999987764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.62  E-value=1.4e-16  Score=110.83  Aligned_cols=90  Identities=29%  Similarity=0.246  Sum_probs=74.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |+++||||+++||+++++.|+++|++|++++|+.+..+.               .+.+|+++.++++++++++   .+++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~D~~~~~~~~~~~~~~---~~~~   63 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---------------DLSTPGGRETAVAAVLDRC---GGVL   63 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHHHHHHHHHHHH---TTCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---------------cccCCcccHHHHHHHHHHc---CCCc
Confidence            689999999999999999999999999999998765321               1578999999999988865   3689


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+||||||....     .+.|++.+++|+.|++
T Consensus        64 d~vi~~Ag~~~~-----~~~~~~~~~~N~~~~~   91 (255)
T 2dkn_A           64 DGLVCCAGVGVT-----AANSGLVVAVNYFGVS   91 (255)
T ss_dssp             SEEEECCCCCTT-----SSCHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCc-----chhHHHHHHHHhHHHH
Confidence            999999997542     2347889999998865

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.61  E-value=6.8e-16  Score=111.59  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=75.7

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+...++++++|||||+|+||.++++.|+++|++|++++|+.....+.   +..   -..+.++.+|++|.+++.++++.
T Consensus        14 ~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---l~~---~~~~~~~~~Dl~d~~~~~~~~~~   87 (333)
T 2q1w_A           14 LVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREH---LKD---HPNLTFVEGSIADHALVNQLIGD   87 (333)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---SCC---CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             eeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhh---Hhh---cCCceEEEEeCCCHHHHHHHHhc
Confidence            344457788999999999999999999999999999999975432111   110   13578899999999999988876


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                           +++|+|||+||.....   +.++++  +++|+.+++
T Consensus        88 -----~~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~  118 (333)
T 2q1w_A           88 -----LQPDAVVHTAASYKDP---DDWYND--TLTNCVGGS  118 (333)
T ss_dssp             -----HCCSEEEECCCCCSCT---TCHHHH--HHHHTHHHH
T ss_pred             -----cCCcEEEECceecCCC---ccCChH--HHHHHHHHH
Confidence                 2699999999975432   334444  888887653

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.60  E-value=1.2e-15  Score=111.97  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=78.4

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-----hHHHHHHHHhcCCCC-eeEEEEecCCCHHHHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-----GRDVKVAIVMQNPAA-KVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-----~~~~~~~l~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      |++|||||+|+||.++++.|+++|++|++++|+.+.     ++.....+...  +. .+.++.+|++|.+++.++++.+ 
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-  105 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV--NKALMKLHYADLTDASSLRRWIDVI-  105 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC----------CCEEEEECCTTCHHHHHHHHHHH-
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccc--cccceEEEECCCCCHHHHHHHHHhc-
Confidence            789999999999999999999999999999997653     22211111111  12 6788999999999999998876 


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          ++|+|||+||....  ..+.+++...+++|+.+++
T Consensus       106 ----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~  138 (381)
T 1n7h_A          106 ----KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGAL  138 (381)
T ss_dssp             ----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHH
T ss_pred             ----CCCEEEECCcccCc--cccccCHHHHHHHHHHHHH
Confidence                68999999996431  2335667888899987764

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.60  E-value=7.1e-16  Score=111.57  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=82.2

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCC-------CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRG-------VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g-------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      .+..++++++|||||+|+||.++++.|+++|       ++|++++|+.+....      .  ...++.++.+|++|.+++
T Consensus         8 ~~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~--~~~~~~~~~~Dl~d~~~~   79 (342)
T 2hrz_A            8 ENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------G--FSGAVDARAADLSAPGEA   79 (342)
T ss_dssp             CCSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------T--CCSEEEEEECCTTSTTHH
T ss_pred             CCCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------c--cCCceeEEEcCCCCHHHH
Confidence            3445778899999999999999999999999       799999998654321      1  145688899999999998


Q ss_pred             HHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           91 RKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++      +++|+|||+||...   ..+.+++.+.+++|+.|++
T Consensus        80 ~~~~~------~~~d~vih~A~~~~---~~~~~~~~~~~~~nv~g~~  117 (342)
T 2hrz_A           80 EKLVE------ARPDVIFHLAAIVS---GEAELDFDKGYRINLDGTR  117 (342)
T ss_dssp             HHHHH------TCCSEEEECCCCCH---HHHHHCHHHHHHHHTHHHH
T ss_pred             HHHHh------cCCCEEEECCccCc---ccccccHHHHHHHHHHHHH
Confidence            88775      37999999999643   2345678889999988764

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.60  E-value=6e-17  Score=112.10  Aligned_cols=97  Identities=13%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .|++|+++||||+|+||+++++.|+++|+  +|++++|+++..+...        ...+.++.+|++|.+++.++++   
T Consensus        15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~---   83 (242)
T 2bka_A           15 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQ---   83 (242)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGS---
T ss_pred             hhcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCHHHHHHHhc---
Confidence            46789999999999999999999999999  9999999876543211        1247788999999888776654   


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          ++|+||||||...     ..+.+++.+++|+.+++
T Consensus        84 ----~~d~vi~~ag~~~-----~~~~~~~~~~~n~~~~~  113 (242)
T 2bka_A           84 ----GHDVGFCCLGTTR-----GKAGAEGFVRVDRDYVL  113 (242)
T ss_dssp             ----SCSEEEECCCCCH-----HHHHHHHHHHHHTHHHH
T ss_pred             ----CCCEEEECCCccc-----ccCCcccceeeeHHHHH
Confidence                6899999999632     12346778888887653

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.59  E-value=4.1e-15  Score=108.59  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=75.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH-HHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR-DVKVAIVMQN--PAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~-~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +|+++||||+|+||.++++.|+++|++|++++|+.+... +....+....  .+..+.++.+|++|.+++.++++.+   
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---   77 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV---   77 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc---
Confidence            368999999999999999999999999999999765421 1111221100  1246888899999999999998875   


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        ++|+|||+||....  ..+.+++...+++|+.+++
T Consensus        78 --~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~  110 (372)
T 1db3_A           78 --QPDEVYNLGAMSHV--AVSFESPEYTADVDAMGTL  110 (372)
T ss_dssp             --CCSEEEECCCCCTT--TTTTSCHHHHHHHHTHHHH
T ss_pred             --CCCEEEECCcccCc--cccccCHHHHHHHHHHHHH
Confidence              68999999997532  2344566778888887754

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.58  E-value=9.9e-16  Score=110.99  Aligned_cols=110  Identities=14%  Similarity=0.123  Sum_probs=74.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ++++.++++|||||+|.||.++++.|+++|  ++|++.+|......  ...+........+.++.+|++|.+.+.++++.
T Consensus        19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   96 (346)
T 4egb_A           19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQDHPNYYFVKGEIQNGELLEHVIKE   96 (346)
T ss_dssp             -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhccCCCeEEEEcCCCCHHHHHHHHhh
Confidence            345678899999999999999999999999  67888877642211  11122222235688999999999999999987


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .     ++|+|||+||....  ..+.+++...+++|+.|+.
T Consensus        97 ~-----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~  130 (346)
T 4egb_A           97 R-----DVQVIVNFAAESHV--DRSIENPIPFYDTNVIGTV  130 (346)
T ss_dssp             H-----TCCEEEECCCCC-----------CHHHHHHTHHHH
T ss_pred             c-----CCCEEEECCcccch--hhhhhCHHHHHHHHHHHHH
Confidence            4     68999999997532  2244556778888887653

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.58  E-value=2.4e-15  Score=109.36  Aligned_cols=109  Identities=15%  Similarity=0.104  Sum_probs=80.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC---CCeeEEEEecCCCHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP---AAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ++++++++|||||+|+||.++++.|+++|++|++++|+.....+....+.....   ...+.++.+|++|.+++.++++ 
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-  101 (352)
T 1sb8_A           23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA-  101 (352)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT-
T ss_pred             cCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc-
Confidence            346678999999999999999999999999999999976432222222221110   1457889999999998887765 


Q ss_pred             HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           97 FTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                            ++|+|||+||....  ..+.+++.+.+++|+.++.
T Consensus       102 ------~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~  134 (352)
T 1sb8_A          102 ------GVDYVLHQAALGSV--PRSINDPITSNATNIDGFL  134 (352)
T ss_dssp             ------TCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHH
T ss_pred             ------CCCEEEECCcccCc--hhhhhCHHHHHHHHHHHHH
Confidence                  68999999996431  1234567788888887754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.58  E-value=3.7e-15  Score=107.98  Aligned_cols=95  Identities=14%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++.+.++|++|||||+|+||.++++.|+++|++|++++|+.+.              ..+.++.+|++|.+.+.++++  
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~--   76 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIM--   76 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHT--
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHh--
Confidence            4445778999999999999999999999999999999998654              236688999999999887775  


Q ss_pred             HhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                           ++|+|||+|+...    .+.+.+...+++|+.++.
T Consensus        77 -----~~d~vih~A~~~~----~~~~~~~~~~~~nv~~~~  107 (347)
T 4id9_A           77 -----GVSAVLHLGAFMS----WAPADRDRMFAVNVEGTR  107 (347)
T ss_dssp             -----TCSEEEECCCCCC----SSGGGHHHHHHHHTHHHH
T ss_pred             -----CCCEEEECCcccC----cchhhHHHHHHHHHHHHH
Confidence                 6899999999643    234455788888887753

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.58  E-value=2.5e-15  Score=108.86  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=79.2

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch------hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA------GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~------~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +|+++||||+|+||.+++++|+++|++|++++|+...      ..+....+.... +.++.++.+|++|.+++.+++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHhc
Confidence            5789999999999999999999999999999886432      222223332211 346788999999999998888752


Q ss_pred             HhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                           ++|+|||+||....  ..+.+++.+.+++|+.+++
T Consensus        81 -----~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~  113 (348)
T 1ek6_A           81 -----SFMAVIHFAGLKAV--GESVQKPLDYYRVNLTGTI  113 (348)
T ss_dssp             -----CEEEEEECCSCCCH--HHHHHCHHHHHHHHHHHHH
T ss_pred             -----CCCEEEECCCCcCc--cchhhchHHHHHHHHHHHH
Confidence                 79999999996431  1234567788888887754

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.57  E-value=4.2e-15  Score=108.88  Aligned_cols=105  Identities=15%  Similarity=0.116  Sum_probs=77.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-----hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-----GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |++|||||+|+||.++++.|+++|++|++++|+.+.     ++.+...+... ....+.++.+|++|.+++.++++.+  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~--  101 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-IEGNMKLHYGDLTDSTCLVKIINEV--  101 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccc-cCCCceEEEccCCCHHHHHHHHHhc--
Confidence            789999999999999999999999999999997643     21111111000 1345788999999999999998875  


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         ++|+|||+||...  ...+.+++...+++|+.+++
T Consensus       102 ---~~d~vih~A~~~~--~~~~~~~~~~~~~~N~~g~~  134 (375)
T 1t2a_A          102 ---KPTEIYNLGAQSH--VKISFDLAEYTADVDGVGTL  134 (375)
T ss_dssp             ---CCSEEEECCSCCC--HHHHHHSHHHHHHHHTHHHH
T ss_pred             ---CCCEEEECCCccc--ccccccCHHHHHHHHHHHHH
Confidence               6899999999642  12234667888999988764

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.57  E-value=1.3e-14  Score=106.84  Aligned_cols=107  Identities=13%  Similarity=0.146  Sum_probs=79.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHH-HCCCEEEEEecCcch---------hHHHHHHHHhcCC---CCe---eEEEEecCCCHH
Q 042455           25 VTAIVTGASSGIGAETTRVLA-LRGVHVIMADRNMAA---------GRDVKVAIVMQNP---AAK---VDVMELDLSSLA   88 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~-~~g~~v~~~~r~~~~---------~~~~~~~l~~~~~---~~~---~~~~~~D~~~~~   88 (138)
                      +++|||||+|+||.++++.|+ ++|++|++++|+...         .+.+...+.....   ...   +.++.+|++|.+
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~   82 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED   82 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCHH
Confidence            479999999999999999999 999999999987554         2333222222211   113   788999999999


Q ss_pred             HHHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           89 SVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        89 ~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.+++++    ++++|+|||+||....  ..+.+++.+.+++|+.+++
T Consensus        83 ~~~~~~~~----~~~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~  125 (397)
T 1gy8_A           83 FLNGVFTR----HGPIDAVVHMCAFLAV--GESVRDPLKYYDNNVVGIL  125 (397)
T ss_dssp             HHHHHHHH----SCCCCEEEECCCCCCH--HHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh----cCCCCEEEECCCccCc--CcchhhHHHHHHHHhHHHH
Confidence            98888764    4569999999997431  1234567888999988764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.57  E-value=1.9e-15  Score=104.72  Aligned_cols=99  Identities=17%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++|+++||||+|+||.++++.|+++  |++|++++|++++.++    +     ...+.++.+|++|.+++.++++    
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~----~-----~~~~~~~~~D~~d~~~~~~~~~----   68 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK----I-----GGEADVFIGDITDADSINPAFQ----   68 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH----T-----TCCTTEEECCTTSHHHHHHHHT----
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh----c-----CCCeeEEEecCCCHHHHHHHHc----
Confidence            45789999999999999999999999  8999999998655432    1     2346788999999999888775    


Q ss_pred             cCCCccEEEECcccCCCC-----------CccCHHHHHHHhhhccccc
Q 042455          100 RALPLNILINKAGICGTP-----------FMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~-----------~~~~~~~~~~~~~~n~~g~  136 (138)
                         .+|++|||||.....           .+...+.+.+.+++|+.++
T Consensus        69 ---~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~  113 (253)
T 1xq6_A           69 ---GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQ  113 (253)
T ss_dssp             ---TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHH
T ss_pred             ---CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHH
Confidence               489999999975310           1122334455677777654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.57  E-value=3.1e-15  Score=103.46  Aligned_cols=78  Identities=13%  Similarity=0.109  Sum_probs=64.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+..|+++||||+|+||.++++.|+++| ++|++++|+++++++.       . ...+.++.+|++|.++++++++    
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~-------~-~~~~~~~~~Dl~d~~~~~~~~~----   87 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP-------Y-PTNSQIIMGDVLNHAALKQAMQ----   87 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS-------C-CTTEEEEECCTTCHHHHHHHHT----
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc-------c-cCCcEEEEecCCCHHHHHHHhc----
Confidence            3556899999999999999999999999 8999999998764321       1 3468899999999999988876    


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                         .+|+||||+|.
T Consensus        88 ---~~D~vv~~a~~   98 (236)
T 3qvo_A           88 ---GQDIVYANLTG   98 (236)
T ss_dssp             ---TCSEEEEECCS
T ss_pred             ---CCCEEEEcCCC
Confidence               47999999985

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.56  E-value=1.9e-14  Score=104.05  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++|||||+|+||.++++.|+++|++|++++|+. .........+..   ..++.++.+|++|.+++.++++..     +
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~-----~   73 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKY-----M   73 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHH-----C
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc---CCceEEEEcCCCCHHHHHHHHhcc-----C
Confidence            5799999999999999999999999999999864 222333333432   235788999999999999998862     6


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+|||+||...  ...+.+++.+.+++|+.|++
T Consensus        74 ~d~vih~A~~~~--~~~~~~~~~~~~~~nv~~~~  105 (347)
T 1orr_A           74 PDSCFHLAGQVA--MTTSIDNPCMDFEINVGGTL  105 (347)
T ss_dssp             CSEEEECCCCCC--HHHHHHCHHHHHHHHHHHHH
T ss_pred             CCEEEECCcccC--hhhhhhCHHHHHHHHHHHHH
Confidence            899999999632  12344567888999988764

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.56  E-value=6.1e-15  Score=106.30  Aligned_cols=105  Identities=16%  Similarity=0.040  Sum_probs=78.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH-HHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR-DVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++++|||||+|+||.++++.|+++|++|++++|+.+... .....+.   ....+.++.+|++|.+++.++++.+    
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~----   85 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG---IEGDIQYEDGDMADACSVQRAVIKA----   85 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT---CGGGEEEEECCTTCHHHHHHHHHHH----
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc---ccCceEEEECCCCCHHHHHHHHHHc----
Confidence            3678999999999999999999999999999999865421 1111111   1346888999999999999998875    


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|+|||+||....  ..+.+++...+++|+.++.
T Consensus        86 -~~d~Vih~A~~~~~--~~~~~~~~~~~~~n~~~~~  118 (335)
T 1rpn_A           86 -QPQEVYNLAAQSFV--GASWNQPVTTGVVDGLGVT  118 (335)
T ss_dssp             -CCSEEEECCSCCCH--HHHTTSHHHHHHHHTHHHH
T ss_pred             -CCCEEEECccccch--hhhhhChHHHHHHHHHHHH
Confidence             68999999996431  1123456778888887653

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.54  E-value=3.7e-14  Score=104.57  Aligned_cols=110  Identities=14%  Similarity=0.145  Sum_probs=80.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH----------------HHHHHHHhcCCCCeeEEEEecCC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR----------------DVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~----------------~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      ..+.++|||||+|.||.++++.|+++|++|++++|......                +....+.... +..+.++.+|++
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~Dl~   87 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDIC   87 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCTT
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECCCC
Confidence            45678999999999999999999999999999998643211                1111111111 346788999999


Q ss_pred             CHHHHHHHHHHHHhcCCCccEEEECcccCCCC-CccCHHHHHHHhhhcccccc
Q 042455           86 SLASVRKFASDFTARALPLNILINKAGICGTP-FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~-~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |.+++.++++..     ++|+|||+||..... ...+++++...+++|+.|+.
T Consensus        88 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~  135 (404)
T 1i24_A           88 DFEFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL  135 (404)
T ss_dssp             SHHHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcc-----CCCEEEECCCCCCccchhhCccchhhhHHHHHHHHH
Confidence            999999998875     689999999975421 12356677788999988764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.54  E-value=3.4e-14  Score=97.11  Aligned_cols=77  Identities=14%  Similarity=0.162  Sum_probs=65.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHH-HCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLA-LRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~-~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|+++||||+|+||+++++.|+ ++|++|++++|+++ +++++.    ..  ...+.++.+|++|.+++.++++      
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~~------   72 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQAVT------   72 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHHHT------
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHHHc------
Confidence            3789999999999999999999 89999999999977 554432    12  4568899999999999988875      


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                       ++|+||||+|.
T Consensus        73 -~~d~vv~~ag~   83 (221)
T 3r6d_A           73 -NAEVVFVGAME   83 (221)
T ss_dssp             -TCSEEEESCCC
T ss_pred             -CCCEEEEcCCC
Confidence             57999999985

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.53  E-value=6.7e-15  Score=105.52  Aligned_cols=97  Identities=25%  Similarity=0.295  Sum_probs=76.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ...+++|||||+|+||.++++.|+++|++|++++|+... +.    +       .+.++.+|++|.+++.++++.     
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l-------~~~~~~~Dl~d~~~~~~~~~~-----   72 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P-------NVEMISLDIMDSQRVKKVISD-----   72 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T-------TEEEEECCTTCHHHHHHHHHH-----
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c-------eeeEEECCCCCHHHHHHHHHh-----
Confidence            446789999999999999999999999999999998654 11    1       477889999999999998876     


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|+|||+||....  ..+.+++.+.+++|+.|+.
T Consensus        73 ~~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~  106 (321)
T 2pk3_A           73 IKPDYIFHLAAKSSV--KDSWLNKKGTFSTNVFGTL  106 (321)
T ss_dssp             HCCSEEEECCSCCCH--HHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEcCcccch--hhhhhcHHHHHHHHHHHHH
Confidence            369999999997432  2233467788888988764

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.51  E-value=2.4e-14  Score=112.60  Aligned_cols=111  Identities=20%  Similarity=0.254  Sum_probs=77.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++.+++|++|||||+|+||.+++++|+++|++|++++|+.....+....+.... ...+.++.+|++|.+++.+++++. 
T Consensus         6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~-   83 (699)
T 1z45_A            6 QSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEY-   83 (699)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHS-
T ss_pred             ccccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhC-
Confidence            345678999999999999999999999999999999987654322222222111 345778899999999998888753 


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          ++|+|||+||.....  ...+...+.+++|+.++.
T Consensus        84 ----~~D~Vih~A~~~~~~--~~~~~~~~~~~~Nv~gt~  116 (699)
T 1z45_A           84 ----KIDSVIHFAGLKAVG--ESTQIPLRYYHNNILGTV  116 (699)
T ss_dssp             ----CCCEEEECCSCCCHH--HHHHSHHHHHHHHHHHHH
T ss_pred             ----CCCEEEECCcccCcC--ccccCHHHHHHHHHHHHH
Confidence                689999999964311  112234557788877653

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.51  E-value=3.6e-14  Score=102.47  Aligned_cols=104  Identities=24%  Similarity=0.239  Sum_probs=74.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|+||.+++++|+++|++|++++|......+....+.... +.++.++.+|++|.+++.++++..     ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-----~~D   75 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDH-----AID   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHT-----TCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhcc-----CCC
Confidence            58999999999999999999999999998874322111122222111 345778899999999998888752     699


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|||+||....  ....+++.+.+++|+.|++
T Consensus        76 ~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~  105 (338)
T 1udb_A           76 TVIHFAGLKAV--GESVQKPLEYYDNNVNGTL  105 (338)
T ss_dssp             EEEECCSCCCH--HHHHHCHHHHHHHHHHHHH
T ss_pred             EEEECCccCcc--ccchhcHHHHHHHHHHHHH
Confidence            99999996431  1123445677888887754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.50  E-value=3.7e-14  Score=103.67  Aligned_cols=101  Identities=11%  Similarity=0.094  Sum_probs=78.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC-CHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS-SLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~   98 (138)
                      .|+++++|||||+|.||.++++.|+++ |++|++++|+.+.......       ...+.++.+|++ |.+.+.++++   
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-------~~~v~~~~~Dl~~d~~~~~~~~~---   90 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK-------HERMHFFEGDITINKEWVEYHVK---   90 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG-------STTEEEEECCTTTCHHHHHHHHH---
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc-------CCCeEEEeCccCCCHHHHHHHhc---
Confidence            466789999999999999999999998 8999999998766443211       246889999999 9999988887   


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          ++|+|||+||...+  ....++..+.+++|+.++.
T Consensus        91 ----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~  123 (372)
T 3slg_A           91 ----KCDVILPLVAIATP--ATYVKQPLRVFELDFEANL  123 (372)
T ss_dssp             ----HCSEEEECBCCCCH--HHHHHCHHHHHHHHTTTTH
T ss_pred             ----cCCEEEEcCccccH--HHHhhCHHHHHHHHHHHHH
Confidence                37999999997532  1223455677888887763

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.50  E-value=1.5e-14  Score=107.82  Aligned_cols=104  Identities=13%  Similarity=0.059  Sum_probs=73.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc---hhHHHHHHHHhcCC-------CCeeEEEEecCCCHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA---AGRDVKVAIVMQNP-------AAKVDVMELDLSSLASV   90 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~---~~~~~~~~l~~~~~-------~~~~~~~~~D~~~~~~~   90 (138)
                      .+.++++|||||+|+||.+++++|++.|++|++++|+.+   ..+.+...+...++       ..++.++.+|++|.+.+
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            356789999999999999999999999999999999987   33333333322211       25689999999998877


Q ss_pred             HHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           91 RKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .        ..+++|+||||||...     ..+.+...+++|+.|+.
T Consensus       146 ~--------~~~~~d~Vih~A~~~~-----~~~~~~~~~~~Nv~g~~  179 (427)
T 4f6c_A          146 V--------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTV  179 (427)
T ss_dssp             C--------CSSCCSEEEECCCCC------------CHHHHHHHHHH
T ss_pred             C--------CcCCCCEEEECCcccC-----CCCCHHHHHHHHHHHHH
Confidence            6        4578999999999753     23456778888887754

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.49  E-value=2.5e-14  Score=103.32  Aligned_cols=105  Identities=20%  Similarity=0.090  Sum_probs=73.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC-CCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP-AAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++|++|||||+|+||.+++++|+++|++|+++.|+.+...... .+..... ..++.++.+|++|.+++.++++     
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVK-HLLDLPKAETHLTLWKADLADEGSFDEAIK-----   76 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHH-HHHTSTTHHHHEEEEECCTTSTTTTHHHHT-----
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHH-HHHhcccCCCeEEEEEcCCCCHHHHHHHHc-----
Confidence            35789999999999999999999999999999999876433221 1211100 1357889999999988877764     


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        .+|+|||+|+... ....  +...+.+++|+.|++
T Consensus        77 --~~d~Vih~A~~~~-~~~~--~~~~~~~~~nv~gt~  108 (337)
T 2c29_D           77 --GCTGVFHVATPMD-FESK--DPENEVIKPTIEGML  108 (337)
T ss_dssp             --TCSEEEECCCCCC-SSCS--SHHHHTHHHHHHHHH
T ss_pred             --CCCEEEEeccccC-CCCC--ChHHHHHHHHHHHHH
Confidence              4799999998642 1111  223467788877654

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.49  E-value=1.6e-14  Score=104.08  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=75.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +++++|||||+|+||.++++.|+++|  ++|++++|+..  ..+.+ ..+.   ....+.++.+|++|.+++.+++    
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~----   73 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE---DDPRYTFVKGDVADYELVKELV----   73 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT---TCTTEEEEECCTTCHHHHHHHH----
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc---cCCceEEEEcCCCCHHHHHHHh----
Confidence            34579999999999999999999986  89999998642  11111 1111   1346888999999999988887    


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         +++|+|||+||...  ...+.+++.+.+++|+.|++
T Consensus        74 ---~~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~  107 (336)
T 2hun_A           74 ---RKVDGVVHLAAESH--VDRSISSPEIFLHSNVIGTY  107 (336)
T ss_dssp             ---HTCSEEEECCCCCC--HHHHHHCTHHHHHHHHHHHH
T ss_pred             ---hCCCEEEECCCCcC--hhhhhhCHHHHHHHHHHHHH
Confidence               26899999999643  12344567788888988764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.48  E-value=1.3e-14  Score=106.52  Aligned_cols=102  Identities=17%  Similarity=0.187  Sum_probs=77.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+++++++||||+|+||.++++.|+++| ++|++++|+.....+   .+.   ....+.++.+|++|.+++.++++    
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l~---~~~~v~~~~~Dl~d~~~l~~~~~----   98 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NVP---DHPAVRFSETSITDDALLASLQD----   98 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GSC---CCTTEEEECSCTTCHHHHHHCCS----
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hcc---CCCceEEEECCCCCHHHHHHHhh----
Confidence            4678899999999999999999999999 999999997654221   110   13468889999999988766554    


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         ++|+|||+||....  ..+.+++.+.+++|+.++.
T Consensus        99 ---~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~  131 (377)
T 2q1s_A           99 ---EYDYVFHLATYHGN--QSSIHDPLADHENNTLTTL  131 (377)
T ss_dssp             ---CCSEEEECCCCSCH--HHHHHCHHHHHHHHTHHHH
T ss_pred             ---CCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHH
Confidence               68999999996431  1234566778888887653

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.48  E-value=3e-14  Score=101.93  Aligned_cols=91  Identities=15%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++||||+|+||.++++.|+++|++|++++|+.+.            ++    ++.+|++|.+++.++++..     +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------------~~----~~~~Dl~d~~~~~~~~~~~-----~   60 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR------------PK----FEQVNLLDSNAVHHIIHDF-----Q   60 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHH-----C
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC------------CC----eEEecCCCHHHHHHHHHhh-----C
Confidence            5789999999999999999999999999999986533            11    5688999999999888765     6


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+|||+||....  ..+.+++.+.+++|+.++.
T Consensus        61 ~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~   92 (315)
T 2ydy_A           61 PHVIVHCAAERRP--DVVENQPDAASQLNVDASG   92 (315)
T ss_dssp             CSEEEECC---------------------CHHHH
T ss_pred             CCEEEECCcccCh--hhhhcCHHHHHHHHHHHHH
Confidence            8999999997532  2345667888889987764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.47  E-value=4.3e-14  Score=103.86  Aligned_cols=100  Identities=19%  Similarity=0.172  Sum_probs=76.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .++++++||||+|+||.++++.|+++|++|++++|+.......      .  ...+.++.+|++|.+++.++++      
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~--~~~v~~~~~Dl~d~~~~~~~~~------   92 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE------D--MFCDEFHLVDLRVMENCLKVTE------   92 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG------G--GTCSEEEECCTTSHHHHHHHHT------
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh------c--cCCceEEECCCCCHHHHHHHhC------
Confidence            3567999999999999999999999999999999986543211      0  2357788999999999888764      


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|+|||+||..... ..+.+++.+.+++|+.++.
T Consensus        93 -~~d~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~g~~  126 (379)
T 2c5a_A           93 -GVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISF  126 (379)
T ss_dssp             -TCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHH
T ss_pred             -CCCEEEECceecCcc-cccccCHHHHHHHHHHHHH
Confidence             589999999974321 1113456778888887653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.46  E-value=7.4e-14  Score=100.78  Aligned_cols=93  Identities=14%  Similarity=0.123  Sum_probs=66.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|+||.++++.|+++|++|++++|+....+.    +.    ...+.++.+|++|.+++.++++       ++|
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l~----~~~~~~~~~Dl~d~~~~~~~~~-------~~d   79 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR----LA----YLEPECRVAEMLDHAGLERALR-------GLD   79 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG----GG----GGCCEEEECCTTCHHHHHHHTT-------TCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh----hc----cCCeEEEEecCCCHHHHHHHHc-------CCC
Confidence            79999999999999999999999999999998765432    11    1257788999999998877764       589


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|||+||...    .+.+++.+.+++|+.++.
T Consensus        80 ~vih~a~~~~----~~~~~~~~~~~~n~~~~~  107 (342)
T 2x4g_A           80 GVIFSAGYYP----SRPRRWQEEVASALGQTN  107 (342)
T ss_dssp             EEEEC----------------CHHHHHHHHHH
T ss_pred             EEEECCccCc----CCCCCHHHHHHHHHHHHH
Confidence            9999999643    233556777888877653

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.45  E-value=7.6e-14  Score=100.37  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=76.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++++||||+|+||.+++++|+++|++|++++|+.....+   .+     ...+.++.+|++|.+++.+++++     .++
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~-----~~~~~~~~~D~~~~~~~~~~~~~-----~~~   68 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED---AI-----TEGAKFYNGDLRDKAFLRDVFTQ-----ENI   68 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GS-----CTTSEEEECCTTCHHHHHHHHHH-----SCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh---hc-----CCCcEEEECCCCCHHHHHHHHhh-----cCC
Confidence            579999999999999999999999999999987544221   11     12577889999999999888875     379


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+|||+||....  ..+.+++.+.+++|+.++.
T Consensus        69 d~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~   99 (330)
T 2c20_A           69 EAVMHFAADSLV--GVSMEKPLQYYNNNVYGAL   99 (330)
T ss_dssp             EEEEECCCCCCH--HHHHHSHHHHHHHHHHHHH
T ss_pred             CEEEECCcccCc--cccccCHHHHHHHHhHHHH
Confidence            999999996431  1234567778888887653

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.45  E-value=3.2e-13  Score=102.21  Aligned_cols=103  Identities=18%  Similarity=0.188  Sum_probs=75.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHC---CCEEEEEecCcchhHHHHHHHHhcCC--------------CCeeEEEEe
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALR---GVHVIMADRNMAAGRDVKVAIVMQNP--------------AAKVDVMEL   82 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~---g~~v~~~~r~~~~~~~~~~~l~~~~~--------------~~~~~~~~~   82 (138)
                      ...++|+++||||+|+||.+++++|++.   |++|++++|+...... ...+.....              ..++.++.+
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~  147 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEVVAG  147 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence            3467899999999999999999999998   8999999998765432 222222111              257899999


Q ss_pred             cCC------CHHHHHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           83 DLS------SLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        83 D~~------~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      |++      +.+.+..+++       ++|+|||+||....      +.+.+.+++|+.|+
T Consensus       148 Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~------~~~~~~~~~Nv~gt  194 (478)
T 4dqv_A          148 DKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA------FPYHELFGPNVAGT  194 (478)
T ss_dssp             CTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB------SSCCEEHHHHHHHH
T ss_pred             ECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC------cCHHHHHHHHHHHH
Confidence            998      6667777665       47999999997542      23345666676654

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.44  E-value=5.2e-14  Score=96.10  Aligned_cols=73  Identities=15%  Similarity=0.281  Sum_probs=62.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i  104 (138)
                      +++||||+|+||.++++.|+++|++|++++|+.++.+..          ..+.++.+|++| .+++.++++       ++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~-------~~   64 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----------NNVKAVHFDVDWTPEEMAKQLH-------GM   64 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----------TTEEEEECCTTSCHHHHHTTTT-------TC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----------CCceEEEecccCCHHHHHHHHc-------CC
Confidence            599999999999999999999999999999987654321          458899999999 888776654       58


Q ss_pred             cEEEECcccCC
Q 042455          105 NILINKAGICG  115 (138)
Q Consensus       105 d~lv~~ag~~~  115 (138)
                      |+||||||...
T Consensus        65 d~vi~~ag~~~   75 (219)
T 3dqp_A           65 DAIINVSGSGG   75 (219)
T ss_dssp             SEEEECCCCTT
T ss_pred             CEEEECCcCCC
Confidence            99999999764

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.44  E-value=1.9e-13  Score=99.33  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=76.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           26 TAIVTGASSGIGAETTRVLALR-GVHVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++|||||+|+||.++++.|++. |++|++++|+..  ..+.+ ..+.   ....+.++.+|++|.+++.+++++.     
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~-----   72 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDIS---ESNRYNFEHADICDSAEITRIFEQY-----   72 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTT---TCTTEEEEECCTTCHHHHHHHHHHH-----
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhhh---cCCCeEEEECCCCCHHHHHHHHhhc-----
Confidence            4999999999999999999998 799999998652  22211 1111   1346888999999999999998762     


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+|||+||...  ...+.+++++.+++|+.|++
T Consensus        73 ~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~  105 (361)
T 1kew_A           73 QPDAVMHLAAESH--VDRSITGPAAFIETNIVGTY  105 (361)
T ss_dssp             CCSEEEECCSCCC--HHHHHHCTHHHHHHHTHHHH
T ss_pred             CCCEEEECCCCcC--hhhhhhCHHHHHHHHHHHHH
Confidence            7999999999643  22344567788999988764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.44  E-value=3.3e-13  Score=90.74  Aligned_cols=78  Identities=19%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++++++||||+|+||.+++++|+++|++|++++|++++....       . ...+.++.+|++|.+++.++++       
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-------~-~~~~~~~~~D~~~~~~~~~~~~-------   66 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-------G-PRPAHVVVGDVLQAADVDKTVA-------   66 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-------S-CCCSEEEESCTTSHHHHHHHHT-------
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-------c-CCceEEEEecCCCHHHHHHHHc-------
Confidence            347899999999999999999999999999999987654321       0 2457889999999999887765       


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      .+|++||++|...
T Consensus        67 ~~d~vi~~a~~~~   79 (206)
T 1hdo_A           67 GQDAVIVLLGTRN   79 (206)
T ss_dssp             TCSEEEECCCCTT
T ss_pred             CCCEEEECccCCC
Confidence            4799999999754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.43  E-value=2.9e-14  Score=102.16  Aligned_cols=100  Identities=17%  Similarity=0.076  Sum_probs=68.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec-Ccch---hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADR-NMAA---GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r-~~~~---~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +|++|||||+|+||.++++.|+++|++|+++.| +.+.   .... ..+...  ..++.++.+|++|.+++.++++    
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~----   73 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFL-TNLPGA--SEKLHFFNADLSNPDSFAAAIE----   73 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHH-HTSTTH--HHHEEECCCCTTCGGGGHHHHT----
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHH-Hhhhcc--CCceEEEecCCCCHHHHHHHHc----
Confidence            578999999999999999999999999999888 5432   2211 111000  1257788999999998887765    


Q ss_pred             cCCCccEEEECcccCCCCCccCHHH-HHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDN-IELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~-~~~~~~~n~~g~~  137 (138)
                         .+|+|||+|+..    ..+.++ +++.+++|+.|++
T Consensus        74 ---~~d~vih~A~~~----~~~~~~~~~~~~~~nv~gt~  105 (322)
T 2p4h_X           74 ---GCVGIFHTASPI----DFAVSEPEEIVTKRTVDGAL  105 (322)
T ss_dssp             ---TCSEEEECCCCC------------CHHHHHHHHHHH
T ss_pred             ---CCCEEEEcCCcc----cCCCCChHHHHHHHHHHHHH
Confidence               479999999742    112222 3458888887764

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.43  E-value=1.1e-13  Score=98.87  Aligned_cols=97  Identities=24%  Similarity=0.353  Sum_probs=74.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|+||.++++.|+++|++|++++|......+   .+     ...+.++.+|++|.+++.+++++.     ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~-----~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d   68 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE---NV-----PKGVPFFRVDLRDKEGVERAFREF-----RPT   68 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG---GS-----CTTCCEECCCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh---hc-----ccCeEEEECCCCCHHHHHHHHHhc-----CCC
Confidence            58999999999999999999999999999885432111   01     124567899999999999888752     689


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++||+||...  ...+.+++...+++|+.|++
T Consensus        69 ~vi~~a~~~~--~~~~~~~~~~~~~~N~~g~~   98 (311)
T 2p5y_A           69 HVSHQAAQAS--VKVSVEDPVLDFEVNLLGGL   98 (311)
T ss_dssp             EEEECCSCCC--HHHHHHCHHHHHHHHTHHHH
T ss_pred             EEEECccccC--chhhhhCHHHHHHHHHHHHH
Confidence            9999999643  12345667889999988764

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.42  E-value=1.1e-13  Score=99.94  Aligned_cols=100  Identities=14%  Similarity=0.146  Sum_probs=69.9

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH--HHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV--KVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~--~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +|++|||||+|+||.++++.|+++|++|+++.|+.+.....  ...+. .  ...+.++.+|++|.+++.++++      
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~~~~~~~------   79 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-E--LGDLKIFRADLTDELSFEAPIA------   79 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-G--GSCEEEEECCTTTSSSSHHHHT------
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-C--CCcEEEEecCCCChHHHHHHHc------
Confidence            68899999999999999999999999999988876542211  11222 1  2457888999999888777664      


Q ss_pred             CCccEEEECcccCCCCCccCHHH-HHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDN-IELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~-~~~~~~~n~~g~~  137 (138)
                       .+|+|||+|+....    ..++ .++.+++|+.|++
T Consensus        80 -~~D~Vih~A~~~~~----~~~~~~~~~~~~nv~gt~  111 (338)
T 2rh8_A           80 -GCDFVFHVATPVHF----ASEDPENDMIKPAIQGVV  111 (338)
T ss_dssp             -TCSEEEEESSCCCC-------------CHHHHHHHH
T ss_pred             -CCCEEEEeCCccCC----CCCCcHHHHHHHHHHHHH
Confidence             47999999985421    1122 2347788877754

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.42  E-value=1.1e-13  Score=100.74  Aligned_cols=102  Identities=13%  Similarity=0.139  Sum_probs=72.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+++++++||||+|+||.++++.|+++| ++|++++|+.....  ...+    ...  . +.+|+++.+.++.+++.  .
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~----~~~--~-~~~d~~~~~~~~~~~~~--~  111 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL----VDL--N-IADYMDKEDFLIQIMAG--E  111 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT----TTS--C-CSEEEEHHHHHHHHHTT--C
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc----cCc--e-EeeecCcHHHHHHHHhh--c
Confidence            3567899999999999999999999999 89999999765421  0111    122  2 67899999888887764  2


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++++|+|||+||....    +.+++.+.+++|+.++.
T Consensus       112 ~~~~~d~Vih~A~~~~~----~~~~~~~~~~~n~~~~~  145 (357)
T 2x6t_A          112 EFGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSK  145 (357)
T ss_dssp             CCSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHH
T ss_pred             ccCCCCEEEECCcccCC----ccCCHHHHHHHHHHHHH
Confidence            35689999999997543    23456778888887653

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.42  E-value=3.3e-14  Score=99.80  Aligned_cols=90  Identities=20%  Similarity=0.276  Sum_probs=72.2

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++||||+|+||.++++.|+++|++|++++|+.....           ...+.++.+|++|.+++.++++       +
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~-------~   63 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-----------EAHEEIVACDLADAQAVHDLVK-------D   63 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-----------CTTEEECCCCTTCHHHHHHHHT-------T
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-----------CCCccEEEccCCCHHHHHHHHc-------C
Confidence            368999999999999999999999999999999865411           1236788999999999887765       4


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+|||+||..      +.+.+.+.+++|+.+++
T Consensus        64 ~d~vi~~a~~~------~~~~~~~~~~~n~~~~~   91 (267)
T 3ay3_A           64 CDGIIHLGGVS------VERPWNDILQANIIGAY   91 (267)
T ss_dssp             CSEEEECCSCC------SCCCHHHHHHHTHHHHH
T ss_pred             CCEEEECCcCC------CCCCHHHHHHHHHHHHH
Confidence            89999999964      22445678888877653

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.40  E-value=1.1e-13  Score=100.28  Aligned_cols=101  Identities=22%  Similarity=0.258  Sum_probs=74.4

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +++|||||+|+||.++++.|+++  |++|++++|+......  ..+.... ...+.++.+|++|.+++.++++.      
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~------   75 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK--ANLEAIL-GDRVELVVGDIADAELVDKLAAK------   75 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG--GGTGGGC-SSSEEEEECCTTCHHHHHHHHTT------
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCh--hHHhhhc-cCCeEEEECCCCCHHHHHHHhhc------
Confidence            68999999999999999999998  8899999996532100  0111111 24688899999999988877653      


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       +|+|||+||...  ...+.++++..+++|+.|++
T Consensus        76 -~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~  107 (348)
T 1oc2_A           76 -ADAIVHYAAESH--NDNSLNDPSPFIHTNFIGTY  107 (348)
T ss_dssp             -CSEEEECCSCCC--HHHHHHCCHHHHHHHTHHHH
T ss_pred             -CCEEEECCcccC--ccchhhCHHHHHHHHHHHHH
Confidence             599999999643  12334556778888887764

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.39  E-value=5.6e-13  Score=93.38  Aligned_cols=88  Identities=22%  Similarity=0.283  Sum_probs=71.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|+||.+++++|+ +|++|++++|+++..           ++     +.+|++|++++.++++.+     ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~-----------~~-----~~~Dl~~~~~~~~~~~~~-----~~d   59 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ-----------GG-----YKLDLTDFPRLEDFIIKK-----RPD   59 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT-----------TC-----EECCTTSHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC-----------CC-----ceeccCCHHHHHHHHHhc-----CCC
Confidence            58999999999999999999 489999999987421           12     789999999999998875     689


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +||||||....  ..+.+++++.+++|+.+++
T Consensus        60 ~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~   89 (273)
T 2ggs_A           60 VIINAAAMTDV--DKCEIEKEKAYKINAEAVR   89 (273)
T ss_dssp             EEEECCCCCCH--HHHHHCHHHHHHHHTHHHH
T ss_pred             EEEECCcccCh--hhhhhCHHHHHHHhHHHHH
Confidence            99999996432  2335678889999988764

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.39  E-value=1.4e-13  Score=98.16  Aligned_cols=96  Identities=16%  Similarity=0.173  Sum_probs=74.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++++||||+|+||.++++.|+++  |++|++++|+.....     +.     ..+.++.+|++|.+++.+++++.    
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~-----~~~~~~~~D~~d~~~~~~~~~~~----   67 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VV-----NSGPFEVVNALDFNQIEHLVEVH----   67 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HH-----HSSCEEECCTTCHHHHHHHHHHT----
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----cc-----CCCceEEecCCCHHHHHHHHhhc----
Confidence            467999999999999999999998  899999999866532     11     12457899999999999888753    


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ++|++||+||....   ...+++.+.+++|+.++.
T Consensus        68 -~~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~   99 (312)
T 2yy7_A           68 -KITDIYLMAALLSA---TAEKNPAFAWDLNMNSLF   99 (312)
T ss_dssp             -TCCEEEECCCCCHH---HHHHCHHHHHHHHHHHHH
T ss_pred             -CCCEEEECCccCCC---chhhChHHHHHHHHHHHH
Confidence             68999999996431   123456777888877653

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.39  E-value=3.4e-13  Score=95.48  Aligned_cols=85  Identities=26%  Similarity=0.411  Sum_probs=70.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ..+++|||||+|.||.++++.|+++|++|++++|+                       .+|++|.+++.++++..     
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~-----   62 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEK-----   62 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHH-----
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhc-----
Confidence            45789999999999999999999999999999985                       37999999999988865     


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+|||+||....  ..+.+++.+.+++|+.++.
T Consensus        63 ~~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~   95 (292)
T 1vl0_A           63 KPNVVINCAAHTAV--DKCEEQYDLAYKINAIGPK   95 (292)
T ss_dssp             CCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHH
T ss_pred             CCCEEEECCccCCH--HHHhcCHHHHHHHHHHHHH
Confidence            68999999996431  2334667888999987764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.39  E-value=1.4e-12  Score=94.65  Aligned_cols=83  Identities=11%  Similarity=0.087  Sum_probs=64.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH---HHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD---VKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~---~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      |++++++||||+|.||.++++.|++.|++|++++|+......   ....+.    ...+.++.+|++|.+++.+++++. 
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~----~~~v~~~~~Dl~d~~~l~~~~~~~-   82 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE----DKGAIIVYGLINEQEAMEKILKEH-   82 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH----HTTCEEEECCTTCHHHHHHHHHHT-
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH----hCCcEEEEeecCCHHHHHHHHhhC-
Confidence            446789999999999999999999999999999998722111   122232    245788999999999999988763 


Q ss_pred             hcCCCccEEEECccc
Q 042455           99 ARALPLNILINKAGI  113 (138)
Q Consensus        99 ~~~~~id~lv~~ag~  113 (138)
                          ++|+|||++|.
T Consensus        83 ----~~d~Vi~~a~~   93 (346)
T 3i6i_A           83 ----EIDIVVSTVGG   93 (346)
T ss_dssp             ----TCCEEEECCCG
T ss_pred             ----CCCEEEECCch
Confidence                68999999996

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.37  E-value=7.1e-14  Score=99.81  Aligned_cols=94  Identities=20%  Similarity=0.247  Sum_probs=71.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +++|||||+|+||.++++.|+++|++|++++|+.+...+..        ...+.++.+|++|.+ +.++++       . 
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dl~d~~-~~~~~~-------~-   63 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV--------NPSAELHVRDLKDYS-WGAGIK-------G-   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS--------CTTSEEECCCTTSTT-TTTTCC-------C-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc--------CCCceEEECccccHH-HHhhcC-------C-
Confidence            36999999999999999999999999999999765533211        245788899999876 544332       2 


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+|||+||..  ....+.+++...+++|+.+++
T Consensus        64 d~vih~A~~~--~~~~~~~~~~~~~~~n~~~~~   94 (312)
T 3ko8_A           64 DVVFHFAANP--EVRLSTTEPIVHFNENVVATF   94 (312)
T ss_dssp             SEEEECCSSC--SSSGGGSCHHHHHHHHHHHHH
T ss_pred             CEEEECCCCC--CchhhhhCHHHHHHHHHHHHH
Confidence            9999999953  234455667788888987764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.37  E-value=1.1e-12  Score=89.75  Aligned_cols=74  Identities=20%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++++||||+|+||.++++.|+++|++|++++|++++....         ...+.++.+|++|.+++.++++       ++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~-------~~   68 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADVSSLDEVCEVCK-------GA   68 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC---------CTTEEEECCCTTCHHHHHHHHT-------TC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc---------cCceEEEEecCCCHHHHHHHhc-------CC
Confidence            6899999999999999999999999999999987664321         2468899999999999888876       48


Q ss_pred             cEEEECcccC
Q 042455          105 NILINKAGIC  114 (138)
Q Consensus       105 d~lv~~ag~~  114 (138)
                      |+|||+||..
T Consensus        69 d~vi~~a~~~   78 (227)
T 3dhn_A           69 DAVISAFNPG   78 (227)
T ss_dssp             SEEEECCCC-
T ss_pred             CEEEEeCcCC
Confidence            9999999864

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.36  E-value=6.7e-13  Score=95.74  Aligned_cols=99  Identities=17%  Similarity=0.152  Sum_probs=72.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC---C---CEEEEEecCcch--hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALR---G---VHVIMADRNMAA--GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~---g---~~v~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++|||||+|+||.+++++|+++   |   ++|++++|+...  .+. ...+   .....+.++.+|++|.+++.+++   
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~-~~~~---~~~~~~~~~~~Dl~d~~~~~~~~---   74 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN-LAPV---DADPRLRFVHGDIRDAGLLAREL---   74 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGG-GGGG---TTCTTEEEEECCTTCHHHHHHHT---
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhh-hhhc---ccCCCeEEEEcCCCCHHHHHHHh---
Confidence            5899999999999999999997   8   899999986421  111 1111   11346888999999999887776   


Q ss_pred             HhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          .++|+|||+||....  ..+.+++++.+++|+.++.
T Consensus        75 ----~~~d~Vih~A~~~~~--~~~~~~~~~~~~~Nv~~~~  108 (337)
T 1r6d_A           75 ----RGVDAIVHFAAESHV--DRSIAGASVFTETNVQGTQ  108 (337)
T ss_dssp             ----TTCCEEEECCSCCCH--HHHHHCCHHHHHHHTHHHH
T ss_pred             ----cCCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHH
Confidence                479999999996431  2234556778888887753

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=99.36  E-value=3.2e-12  Score=87.92  Aligned_cols=78  Identities=21%  Similarity=0.305  Sum_probs=60.6

Q ss_pred             CCCCCEEEEeCC----------------CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           21 DAAGVTAIVTGA----------------SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        21 ~~~~k~~litG~----------------~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      ++.||++|||||                +|+||+++|+.|+.+|++|++++++... +         .+.. +  -.+|+
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l-~---------~~~g-~--~~~dv   71 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL-P---------TPPF-V--KRVDV   71 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC-C---------CCTT-E--EEEEC
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccc-c---------cCCC-C--eEEcc
Confidence            578999999999                6899999999999999999999886521 1         0111 1  25688


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           85 SSLASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      ++.++   +++.+.+.++++|++|+|||+.
T Consensus        72 ~~~~~---~~~~v~~~~~~~Dili~~Aav~   98 (226)
T 1u7z_A           72 MTALE---MEAAVNASVQQQNIFIGCAAVA   98 (226)
T ss_dssp             CSHHH---HHHHHHHHGGGCSEEEECCBCC
T ss_pred             CcHHH---HHHHHHHhcCCCCEEEECCccc
Confidence            77554   5566667778999999999986

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.36  E-value=3.1e-14  Score=96.58  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=68.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++++||||+|+||.+++++|+++|+  +|++++|+++.          .  ...+.++.+|++|.+++.+++      
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------~--~~~~~~~~~D~~~~~~~~~~~------   65 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------E--HPRLDNPVGPLAELLPQLDGS------   65 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------C--CTTEECCBSCHHHHGGGCCSC------
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------c--CCCceEEeccccCHHHHHHhh------
Confidence            367899999999999999999999998  99999998765          1  235777889988776654443      


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                         +|++||++|....    +.+++++.+++|+.++
T Consensus        66 ---~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~   94 (215)
T 2a35_A           66 ---IDTAFCCLGTTIK----EAGSEEAFRAVDFDLP   94 (215)
T ss_dssp             ---CSEEEECCCCCHH----HHSSHHHHHHHHTHHH
T ss_pred             ---hcEEEECeeeccc----cCCCHHHHHHhhHHHH
Confidence               8999999996421    2345667777777654

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.35  E-value=2.4e-12  Score=91.99  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=59.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++++||||+|.||.++++.|+++|++|++++|+.....     +.      .+.++.+|++ .+++.++++       +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~------~~~~~~~Dl~-~~~~~~~~~-------~   62 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-----IN------DYEYRVSDYT-LEDLINQLN-------D   62 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTT-------T
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-----CC------ceEEEEcccc-HHHHHHhhc-------C
Confidence            368999999999999999999999999999999843322     11      4778999999 888777665       6


Q ss_pred             ccEEEECcccCC
Q 042455          104 LNILINKAGICG  115 (138)
Q Consensus       104 id~lv~~ag~~~  115 (138)
                      +|+|||+||...
T Consensus        63 ~d~Vih~a~~~~   74 (311)
T 3m2p_A           63 VDAVVHLAATRG   74 (311)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEEccccCC
Confidence            899999999754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.34  E-value=2.6e-12  Score=87.26  Aligned_cols=72  Identities=18%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|+||.++++.|+++|++|++++|++++.....         ..+.++.+|++|.++  +.       +.++|
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~--~~-------~~~~d   63 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL--SD-------LSDQN   63 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH--HH-------HTTCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh--hh-------hcCCC
Confidence            5899999999999999999999999999999976644321         347889999998877  11       24689


Q ss_pred             EEEECcccCC
Q 042455          106 ILINKAGICG  115 (138)
Q Consensus       106 ~lv~~ag~~~  115 (138)
                      +|||++|...
T Consensus        64 ~vi~~ag~~~   73 (221)
T 3ew7_A           64 VVVDAYGISP   73 (221)
T ss_dssp             EEEECCCSST
T ss_pred             EEEECCcCCc
Confidence            9999999753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.34  E-value=1.3e-12  Score=89.05  Aligned_cols=72  Identities=17%  Similarity=0.194  Sum_probs=59.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|+||.++++.|+++|++|++++|+.++...+    .    ...+.++.+|++|.++  .       .+.++|
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----~----~~~~~~~~~D~~d~~~--~-------~~~~~d   64 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR----L----GATVATLVKEPLVLTE--A-------DLDSVD   64 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----T----CTTSEEEECCGGGCCH--H-------HHTTCS
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc----c----CCCceEEecccccccH--h-------hcccCC
Confidence            499999999999999999999999999999987665432    1    2457889999998877  1       124689


Q ss_pred             EEEECcccC
Q 042455          106 ILINKAGIC  114 (138)
Q Consensus       106 ~lv~~ag~~  114 (138)
                      +|||+||..
T Consensus        65 ~vi~~ag~~   73 (224)
T 3h2s_A           65 AVVDALSVP   73 (224)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccC
Confidence            999999975

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.34  E-value=1.7e-12  Score=93.65  Aligned_cols=96  Identities=15%  Similarity=0.060  Sum_probs=71.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhcCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTARAL  102 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~  102 (138)
                      ++++||||+|+||.+++++|+++ |++|++++|+.+..+...       ....+.++.+|++| .+.++++++       
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~-------   66 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVK-------   66 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCSHHHHHHHH-------
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh-------cCCCeEEEeccccCcHHHHHhhcc-------
Confidence            36999999999999999999998 899999999876643211       13458889999998 456666665       


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++|+|||+||...+.  ...+++.+.+++|+.++
T Consensus        67 ~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~   98 (345)
T 2bll_A           67 KCDVVLPLVAIATPI--EYTRNPLRVFELDFEEN   98 (345)
T ss_dssp             HCSEEEECBCCCCHH--HHHHSHHHHHHHHTHHH
T ss_pred             CCCEEEEcccccCcc--chhcCHHHHHHHHHHHH
Confidence            379999999974321  12245667788887765

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.33  E-value=3.9e-13  Score=96.11  Aligned_cols=94  Identities=14%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |++|||||+|+||.++++.|+++|..|++..++....+.       .  ...+.++.+|+++ +++.++++       ++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~-------~--~~~~~~~~~Dl~~-~~~~~~~~-------~~   64 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEF-------V--NEAARLVKADLAA-DDIKDYLK-------GA   64 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGG-------S--CTTEEEECCCTTT-SCCHHHHT-------TC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhh-------c--CCCcEEEECcCCh-HHHHHHhc-------CC
Confidence            479999999999999999999999555555544433221       1  2457889999998 77777664       68


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++||+|+..  ....+.+++.+.+++|+.|++
T Consensus        65 d~vih~a~~~--~~~~~~~~~~~~~~~nv~~~~   95 (313)
T 3ehe_A           65 EEVWHIAANP--DVRIGAENPDEIYRNNVLATY   95 (313)
T ss_dssp             SEEEECCCCC--CCC-CCCCHHHHHHHHHHHHH
T ss_pred             CEEEECCCCC--ChhhhhhCHHHHHHHHHHHHH
Confidence            9999999953  233455677888999988764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.32  E-value=7.3e-12  Score=89.13  Aligned_cols=79  Identities=16%  Similarity=0.145  Sum_probs=63.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-------chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-------AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-------~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +++++||||+|+||.++++.|+++|++|++++|+.       ++.+.+ ..+..    ..+.++.+|++|.+++.++++ 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~----~~v~~v~~D~~d~~~l~~~~~-   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQS----LGVILLEGDINDHETLVKAIK-   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH----TTCEEEECCTTCHHHHHHHHT-
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh----CCCEEEEeCCCCHHHHHHHHh-
Confidence            46799999999999999999999999999999986       333322 22322    236788999999998887765 


Q ss_pred             HHhcCCCccEEEECcccC
Q 042455           97 FTARALPLNILINKAGIC  114 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~  114 (138)
                            .+|+|||++|..
T Consensus        76 ------~~d~vi~~a~~~   87 (307)
T 2gas_A           76 ------QVDIVICAAGRL   87 (307)
T ss_dssp             ------TCSEEEECSSSS
T ss_pred             ------CCCEEEECCccc
Confidence                  489999999963

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.32  E-value=1.1e-12  Score=95.39  Aligned_cols=93  Identities=13%  Similarity=0.087  Sum_probs=72.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCC-----CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRG-----VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g-----~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +++++||||+|.||.+++++|+++|     ++|++++|+.....     +    ....+.++.+|++|.+++.++++.  
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~----~~~~~~~~~~Dl~d~~~~~~~~~~--   69 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H----EDNPINYVQCDISDPDDSQAKLSP--   69 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C----CSSCCEEEECCTTSHHHHHHHHTT--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c----ccCceEEEEeecCCHHHHHHHHhc--
Confidence            4689999999999999999999999     99999999866532     1    134578899999999988777653  


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                        ..++|++||+||...       +++...+++|+.++
T Consensus        70 --~~~~d~vih~a~~~~-------~~~~~~~~~n~~~~   98 (364)
T 2v6g_A           70 --LTDVTHVFYVTWANR-------STEQENCEANSKMF   98 (364)
T ss_dssp             --CTTCCEEEECCCCCC-------SSHHHHHHHHHHHH
T ss_pred             --CCCCCEEEECCCCCc-------chHHHHHHHhHHHH
Confidence              235999999999642       23455667776654

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.31  E-value=8.8e-13  Score=94.30  Aligned_cols=91  Identities=23%  Similarity=0.354  Sum_probs=71.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           26 TAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      ++|||||+|+||.++++.|+++  |++|++++|+....+             .+.++.+|++|.+++.+++++     .+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-------------~~~~~~~D~~d~~~~~~~~~~-----~~   62 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-------------GIKFITLDVSNRDEIDRAVEK-----YS   62 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-------------TCCEEECCTTCHHHHHHHHHH-----TT
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-------------CceEEEecCCCHHHHHHHHhh-----cC
Confidence            3899999999999999999998  789999998754421             245788999999999988875     26


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+|||+||....   ...+++...+++|+.++.
T Consensus        63 ~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~   93 (317)
T 3ajr_A           63 IDAIFHLAGILSA---KGEKDPALAYKVNMNGTY   93 (317)
T ss_dssp             CCEEEECCCCCHH---HHHHCHHHHHHHHHHHHH
T ss_pred             CcEEEECCcccCC---ccccChHHHhhhhhHHHH
Confidence            9999999996431   123456778888887653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.31  E-value=7e-13  Score=96.00  Aligned_cols=99  Identities=15%  Similarity=0.184  Sum_probs=68.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++++++|||||+|+||.+++++|+++|++|++++|+..........+   .....+.++.+|+++..            
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~------------   88 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---IGHENFELINHDVVEPL------------   88 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG---TTCTTEEEEECCTTSCC------------
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh---ccCCceEEEeCccCChh------------
Confidence            467889999999999999999999999999999998754321111111   11345788899998742            


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +.++|+|||+||......  ..+++.+.+++|+.++
T Consensus        89 ~~~~d~vih~A~~~~~~~--~~~~~~~~~~~n~~~~  122 (343)
T 2b69_A           89 YIEVDQIYHLASPASPPN--YMYNPIKTLKTNTIGT  122 (343)
T ss_dssp             CCCCSEEEECCSCCSHHH--HTTCHHHHHHHHHHHH
T ss_pred             hcCCCEEEECccccCchh--hhhCHHHHHHHHHHHH
Confidence            457999999999643110  1123456777887665

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.30  E-value=1.2e-11  Score=88.67  Aligned_cols=80  Identities=9%  Similarity=0.089  Sum_probs=63.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .++++||||+|+||.++++.|+++|++|++++|+.+...+....+..    ..+.++.+|++|.+++.++++       .
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~----~~v~~v~~Dl~d~~~l~~a~~-------~   79 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS----LGAIIVKGELDEHEKLVELMK-------K   79 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH----TTCEEEECCTTCHHHHHHHHT-------T
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc----CCCEEEEecCCCHHHHHHHHc-------C
Confidence            36799999999999999999999999999999987522222223322    236789999999999888775       4


Q ss_pred             ccEEEECcccC
Q 042455          104 LNILINKAGIC  114 (138)
Q Consensus       104 id~lv~~ag~~  114 (138)
                      +|+|||+++..
T Consensus        80 ~d~vi~~a~~~   90 (318)
T 2r6j_A           80 VDVVISALAFP   90 (318)
T ss_dssp             CSEEEECCCGG
T ss_pred             CCEEEECCchh
Confidence            89999999853

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.29  E-value=9.3e-13  Score=93.03  Aligned_cols=82  Identities=21%  Similarity=0.348  Sum_probs=67.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|.||.++++.|+++|++|++++|.                       ++|++|.+.+.+++++.     ++|
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~-----~~d   58 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEI-----RPH   58 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhc-----CCC
Confidence            79999999999999999999999999999982                       37999999999998875     689


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++||+||....  ..+.+++...+++|+.++.
T Consensus        59 ~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~   88 (287)
T 3sc6_A           59 IIIHCAAYTKV--DQAEKERDLAYVINAIGAR   88 (287)
T ss_dssp             EEEECCCCCCH--HHHTTCHHHHHHHHTHHHH
T ss_pred             EEEECCcccCh--HHHhcCHHHHHHHHHHHHH
Confidence            99999997531  1222456778888887653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.29  E-value=1.7e-11  Score=87.31  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchh--HHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG--RDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~--~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .++++||||+|.||.++++.|+++|++|++++|+....  .+....+.... ...+.++.+|++|.+++.++++      
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~------   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVK------   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHH------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHc------
Confidence            46799999999999999999999999999999985432  11111111110 2347889999999999888776      


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                       .+|++||++|..
T Consensus        77 -~~d~vi~~a~~~   88 (308)
T 1qyc_A           77 -NVDVVISTVGSL   88 (308)
T ss_dssp             -TCSEEEECCCGG
T ss_pred             -CCCEEEECCcch
Confidence             379999999863

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.29  E-value=3.5e-12  Score=99.93  Aligned_cols=100  Identities=14%  Similarity=0.068  Sum_probs=74.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHH-HHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLAS-VRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~   99 (138)
                      +++++++||||+|+||.+++++|+++ |++|++++|+........       ....+.++.+|++|.++ ++++++    
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~-------~~~~v~~v~~Dl~d~~~~~~~~~~----  381 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVK----  381 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT-------TCTTEEEEECCTTTCHHHHHHHHH----
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc-------cCCceEEEECCCCCcHHHHHHhhc----
Confidence            46789999999999999999999998 899999999876543211       13468889999998764 555554    


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                         ++|+|||+||...+.  ...+++.+.+++|+.|+.
T Consensus       382 ---~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~  414 (660)
T 1z7e_A          382 ---KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENL  414 (660)
T ss_dssp             ---HCSEEEECCCCCCTH--HHHHSHHHHHHHHTHHHH
T ss_pred             ---CCCEEEECceecCcc--ccccCHHHHHHhhhHHHH
Confidence               479999999975421  123456678888887653

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.29  E-value=3.4e-12  Score=91.37  Aligned_cols=86  Identities=17%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++++++||||+|.||.+++++|+++|++|+++.|+.                      .+|++|.+++.+++++.     
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~-----   54 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASE-----   54 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHH-----
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhc-----
Confidence            457899999999999999999999999998887752                      26999999999888764     


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++|+|||+||.... .....+++.+.+++|+.++
T Consensus        55 ~~d~vih~a~~~~~-~~~~~~~~~~~~~~n~~~~   87 (321)
T 1e6u_A           55 RIDQVYLAAAKVGG-IVANNTYPADFIYQNMMIE   87 (321)
T ss_dssp             CCSEEEECCCCCCC-HHHHHHCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCeecCC-cchhhhCHHHHHHHHHHHH
Confidence            68999999996431 1122344566777787664

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.27  E-value=2.6e-11  Score=86.44  Aligned_cols=80  Identities=10%  Similarity=0.053  Sum_probs=63.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-----hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-----GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++++||||+|.||.++++.|+++|++|++++|+...     .+. ...+.    ...+.++.+|++|.+++.++++   
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~-~~~~~----~~~~~~~~~D~~d~~~l~~~~~---   75 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQM-LLYFK----QLGAKLIEASLDDHQRLVDALK---   75 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHH-HHHHH----TTTCEEECCCSSCHHHHHHHHT---
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHH-HHHHH----hCCeEEEeCCCCCHHHHHHHHh---
Confidence            4679999999999999999999999999999998532     221 12222    2347888999999999887765   


Q ss_pred             hcCCCccEEEECcccCC
Q 042455           99 ARALPLNILINKAGICG  115 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~  115 (138)
                          .+|+|||++|...
T Consensus        76 ----~~d~vi~~a~~~~   88 (313)
T 1qyd_A           76 ----QVDVVISALAGGV   88 (313)
T ss_dssp             ----TCSEEEECCCCSS
T ss_pred             ----CCCEEEECCcccc
Confidence                4899999999753

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.25  E-value=2.9e-11  Score=86.64  Aligned_cols=79  Identities=13%  Similarity=0.144  Sum_probs=61.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-c----hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-A----AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~----~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++||||+|+||.++++.|+++|++|++++|+. .    ...+....+..    ..+.++.+|++|.+++.++++    
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~----~~v~~v~~D~~d~~~l~~a~~----   76 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRS----MGVTIIEGEMEEHEKMVSVLK----   76 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHH----TTCEEEECCTTCHHHHHHHHT----
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhc----CCcEEEEecCCCHHHHHHHHc----
Confidence            5699999999999999999999999999999986 2    11111222222    347889999999999888775    


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                         .+|+|||++|..
T Consensus        77 ---~~d~vi~~a~~~   88 (321)
T 3c1o_A           77 ---QVDIVISALPFP   88 (321)
T ss_dssp             ---TCSEEEECCCGG
T ss_pred             ---CCCEEEECCCcc
Confidence               389999999863

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.25  E-value=1e-12  Score=92.91  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=65.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++++++||| +|.||.++++.|+++|++|++++|+.+..            ...+.++.+|++|.+.+.++++      +
T Consensus         2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~------~   62 (286)
T 3gpi_A            2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASIVH------L   62 (286)
T ss_dssp             CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTGGG------G
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHhhc------C
Confidence            456899999 59999999999999999999999987652            2457788999999988777664      3


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhcccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLG  135 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g  135 (138)
                      ++|++||+||..       ..++...+++|+.+
T Consensus        63 ~~d~vih~a~~~-------~~~~~~~~~~n~~~   88 (286)
T 3gpi_A           63 RPEILVYCVAAS-------EYSDEHYRLSYVEG   88 (286)
T ss_dssp             CCSEEEECHHHH-------HHC-----CCSHHH
T ss_pred             CCCEEEEeCCCC-------CCCHHHHHHHHHHH
Confidence            699999999963       22334455555544

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.24  E-value=4.9e-11  Score=84.72  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +|+++||||+|+||.++++.|+++| ++|++++|++++...  ..+..    ..+.++.+|++|++++.++++       
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~----~~~~~~~~D~~d~~~l~~~~~-------   71 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL----QGAEVVQGDQDDQVIMELALN-------   71 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH----TTCEEEECCTTCHHHHHHHHT-------
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH----CCCEEEEecCCCHHHHHHHHh-------
Confidence            5789999999999999999999998 999999998765432  22222    236788999999999887765       


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++||++|.
T Consensus        72 ~~d~vi~~a~~   82 (299)
T 2wm3_A           72 GAYATFIVTNY   82 (299)
T ss_dssp             TCSEEEECCCH
T ss_pred             cCCEEEEeCCC
Confidence            48999999985

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.22  E-value=5e-12  Score=89.65  Aligned_cols=84  Identities=19%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++||||+|.||.++++.|+ +|++|++++|+..                   .+.+|++|.+++.++++..     ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~-----~~d   56 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKL-----RPD   56 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHH-----CCS
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhc-----CCC
Confidence            59999999999999999999 8999999999751                   2478999999999888764     689


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++||+||....  ..+.+++.+.+++|+.++
T Consensus        57 ~vih~a~~~~~--~~~~~~~~~~~~~n~~~~   85 (299)
T 1n2s_A           57 VIVNAAAHTAV--DKAESEPELAQLLNATSV   85 (299)
T ss_dssp             EEEECCCCCCH--HHHTTCHHHHHHHHTHHH
T ss_pred             EEEECcccCCH--hhhhcCHHHHHHHHHHHH
Confidence            99999996431  112344567788887765

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.22  E-value=6.1e-12  Score=89.48  Aligned_cols=96  Identities=14%  Similarity=0.145  Sum_probs=69.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +++||||+|+||.+++++|+++| ++|++++|+.....  ...+.    +..   +.+|+++.+.++.+++..  .++++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~---~~~d~~~~~~~~~~~~~~--~~~~~   69 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----DLN---IADYMDKEDFLIQIMAGE--EFGDV   69 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH----TSC---CSEEEEHHHHHHHHHTTC--CCSSC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC----cce---eccccccHHHHHHHHhcc--ccCCC
Confidence            38999999999999999999999 89999999765431  11121    112   678999888877776521  12479


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      |++||+||....    +.+++.+.+++|+.++
T Consensus        70 d~vi~~a~~~~~----~~~~~~~~~~~n~~~~   97 (310)
T 1eq2_A           70 EAIFHEGACSST----TEWDGKYMMDNNYQYS   97 (310)
T ss_dssp             CEEEECCSCCCT----TCCCHHHHHHHTHHHH
T ss_pred             cEEEECcccccC----cccCHHHHHHHHHHHH
Confidence            999999997543    2334566778887665

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.21  E-value=1.9e-11  Score=86.23  Aligned_cols=74  Identities=22%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      |+++||||+|+||.++++.|+++  |++|++++|+.++.+.+.    .    ..+.++.+|++|.+++.++++       
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~----~----~~~~~~~~D~~d~~~l~~~~~-------   65 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA----D----QGVEVRHGDYNQPESLQKAFA-------   65 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH----H----TTCEEEECCTTCHHHHHHHTT-------
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh----h----cCCeEEEeccCCHHHHHHHHh-------
Confidence            46999999999999999999998  999999999877655432    1    236788999999998877765       


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++||+||.
T Consensus        66 ~~d~vi~~a~~   76 (287)
T 2jl1_A           66 GVSKLLFISGP   76 (287)
T ss_dssp             TCSEEEECCCC
T ss_pred             cCCEEEEcCCC
Confidence            47999999995

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.21  E-value=8.2e-11  Score=85.85  Aligned_cols=81  Identities=17%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEec-CCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD-LSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~  100 (138)
                      +.+++++||||+|+||.++++.|+++|++|++++|+.+...  ...+..   ...+.++.+| ++|.+++.++++     
T Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~---~~~v~~v~~D~l~d~~~l~~~~~-----   72 (352)
T 1xgk_A            3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA---IPNVTLFQGPLLNNVPLMDTLFE-----   72 (352)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT---STTEEEEESCCTTCHHHHHHHHT-----
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh---cCCcEEEECCccCCHHHHHHHHh-----
Confidence            34678999999999999999999999999999999877642  122322   1347788999 999999887765     


Q ss_pred             CCCccEEEECcccC
Q 042455          101 ALPLNILINKAGIC  114 (138)
Q Consensus       101 ~~~id~lv~~ag~~  114 (138)
                        .+|++|+|++..
T Consensus        73 --~~d~Vi~~a~~~   84 (352)
T 1xgk_A           73 --GAHLAFINTTSQ   84 (352)
T ss_dssp             --TCSEEEECCCST
T ss_pred             --cCCEEEEcCCCC
Confidence              479999998753

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.20  E-value=2.5e-11  Score=85.79  Aligned_cols=74  Identities=22%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +++||||+|+||.++++.|++. |++|++++|+.++...+    .    ...+.++.+|++|++++.++++       .+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~----~----~~~v~~~~~D~~d~~~l~~~~~-------~~   66 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD----W----RGKVSVRQLDYFNQESMVEAFK-------GM   66 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG----G----BTTBEEEECCTTCHHHHHHHTT-------TC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh----h----hCCCEEEEcCCCCHHHHHHHHh-------CC
Confidence            4899999999999999999998 89999999998764332    1    2457889999999998877764       58


Q ss_pred             cEEEECcccC
Q 042455          105 NILINKAGIC  114 (138)
Q Consensus       105 d~lv~~ag~~  114 (138)
                      |++||++|..
T Consensus        67 d~vi~~a~~~   76 (289)
T 3e48_A           67 DTVVFIPSII   76 (289)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEEeCCCC
Confidence            9999999964

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.18  E-value=9.8e-12  Score=94.60  Aligned_cols=101  Identities=13%  Similarity=0.054  Sum_probs=70.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchh---HHHHHHHHhcC-------CCCeeEEEEecCCCHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG---RDVKVAIVMQN-------PAAKVDVMELDLSSLASVRK   92 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~---~~~~~~l~~~~-------~~~~~~~~~~D~~~~~~~~~   92 (138)
                      ..+++|||||+|.||.+++++|.+.|++|+++.|+....   ..+...+...+       ...++.++.+|+++++.+. 
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  227 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  227 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence            357999999999999999999998899999999987732   22222222110       1357899999999977766 


Q ss_pred             HHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           93 FASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        93 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                             ...++|+|||+|+....     ...+...+++|+.|+
T Consensus       228 -------~~~~~D~Vih~Aa~~~~-----~~~~~~~~~~Nv~gt  259 (508)
T 4f6l_B          228 -------LPENMDTIIHAGARTDH-----FGDDDEFEKVNVQGT  259 (508)
T ss_dssp             -------CSSCCSEEEECCCC-------------CCHHHHHHHH
T ss_pred             -------CccCCCEEEECCceecC-----CCCHHHHhhhHHHHH
Confidence                   34689999999997531     223455666666554

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.17  E-value=4.8e-12  Score=89.95  Aligned_cols=91  Identities=18%  Similarity=0.103  Sum_probs=65.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .|+++++|||||+|.||.++++.|+++|+      +....             ...+..+.+|++|.+.+.++++..   
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~~~---   60 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGED-------------WVFVSSKDADLTDTAQTRALFEKV---   60 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE-------------EEECCTTTCCTTSHHHHHHHHHHS---
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc-------------ccccCceecccCCHHHHHHHHhhc---
Confidence            46678999999999999999999999997      11000             122334478999999999988763   


Q ss_pred             CCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          101 ALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       101 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                        ++|+|||+|+.... ...+.++..+.+++|+.|+
T Consensus        61 --~~d~Vih~A~~~~~-~~~~~~~~~~~~~~nv~gt   93 (319)
T 4b8w_A           61 --QPTHVIHLAAMVGG-LFRNIKYNLDFWRKNVHMN   93 (319)
T ss_dssp             --CCSEEEECCCCCCC-HHHHTTCHHHHHHHHHHHH
T ss_pred             --CCCEEEECceeccc-ccccccCHHHHHHHHHHHH
Confidence              68999999997431 1112234456777787664

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=99.16  E-value=5e-11  Score=77.85  Aligned_cols=78  Identities=12%  Similarity=0.096  Sum_probs=62.9

Q ss_pred             CchHHHHHHHHHHCCCEEEEEecCcchhH---HHHHHHHhcCCCCeeEEEEecCCCH--HHHHHHHHHHHhcCCCccEEE
Q 042455           34 SGIGAETTRVLALRGVHVIMADRNMAAGR---DVKVAIVMQNPAAKVDVMELDLSSL--ASVRKFASDFTARALPLNILI  108 (138)
Q Consensus        34 ~~iG~~~a~~l~~~g~~v~~~~r~~~~~~---~~~~~l~~~~~~~~~~~~~~D~~~~--~~~~~~~~~~~~~~~~id~lv  108 (138)
                      +-++.++++.|+++|++|++..|++....   +....+...  +.++..+++|++++  ++++++++.+.+.+|+ |+||
T Consensus        26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~--G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLV  102 (157)
T 3gxh_A           26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA--GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLV  102 (157)
T ss_dssp             BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT--TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEE
T ss_pred             CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEE
Confidence            45789999999999999999988654322   123333333  67788899999999  9999999999988999 9999


Q ss_pred             ECcccC
Q 042455          109 NKAGIC  114 (138)
Q Consensus       109 ~~ag~~  114 (138)
                      ||+|..
T Consensus       103 nnAgg~  108 (157)
T 3gxh_A          103 HCLANY  108 (157)
T ss_dssp             ECSBSH
T ss_pred             ECCCCC
Confidence            999964

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.15  E-value=5.4e-11  Score=83.76  Aligned_cols=73  Identities=16%  Similarity=0.190  Sum_probs=59.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           26 TAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++||||+|+||.++++.|+++  |++|++++|++++.+.+.    .    ..+.++.+|++|.+++.++++       .
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~~~~~~~~-------~   65 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA----A----QGITVRQADYGDEAALTSALQ-------G   65 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH----H----TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh----c----CCCeEEEcCCCCHHHHHHHHh-------C
Confidence            3799999999999999999998  999999999877654422    1    236788999999998877664       4


Q ss_pred             ccEEEECccc
Q 042455          104 LNILINKAGI  113 (138)
Q Consensus       104 id~lv~~ag~  113 (138)
                      +|++||++|.
T Consensus        66 ~d~vi~~a~~   75 (286)
T 2zcu_A           66 VEKLLLISSS   75 (286)
T ss_dssp             CSEEEECC--
T ss_pred             CCEEEEeCCC
Confidence            7999999995

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.13  E-value=4.3e-10  Score=69.12  Aligned_cols=74  Identities=23%  Similarity=0.237  Sum_probs=60.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +++++|+|+ |++|.++++.|.+.| ++|++++|++++.+...        ...+..+.+|+++.+.+.++++       
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~-------   68 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--------RMGVATKQVDAKDEAGLAKALG-------   68 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--------TTTCEEEECCTTCHHHHHHHTT-------
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--------hCCCcEEEecCCCHHHHHHHHc-------
Confidence            468999999 999999999999999 79999999887765533        1235678899999888776653       


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++|++++.
T Consensus        69 ~~d~vi~~~~~   79 (118)
T 3ic5_A           69 GFDAVISAAPF   79 (118)
T ss_dssp             TCSEEEECSCG
T ss_pred             CCCEEEECCCc
Confidence            68999999975

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=99.12  E-value=8e-10  Score=82.18  Aligned_cols=82  Identities=18%  Similarity=0.369  Sum_probs=70.4

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCC---CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRG---VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g---~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++++|+|+ |+||.++++.|++.|   ..|++++|+.++++++..++.... +.++..+.+|+++.+++++++++.    
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~----   75 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEV----   75 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHH----
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhh----
Confidence            47899999 899999999999998   389999999999888887775432 245788999999999999999875    


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                       ++|+|||++|.
T Consensus        76 -~~DvVin~ag~   86 (405)
T 4ina_A           76 -KPQIVLNIALP   86 (405)
T ss_dssp             -CCSEEEECSCG
T ss_pred             -CCCEEEECCCc
Confidence             68999999985

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=99.11  E-value=3.8e-11  Score=82.84  Aligned_cols=78  Identities=14%  Similarity=0.247  Sum_probs=57.2

Q ss_pred             CCCEEEEeCC----------------CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           23 AGVTAIVTGA----------------SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        23 ~~k~~litG~----------------~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      .||++|||||                +|++|.++|+.++.+|++|++++|+.....        ..+ ..+  ...|+. 
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~--------~~~-~~~--~~~~v~-   69 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP--------EPH-PNL--SIREIT-   69 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC--------CCC-TTE--EEEECC-
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--------cCC-CCe--EEEEHh-
Confidence            4899999999                778999999999999999999999753210        001 112  234554 


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           87 LASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                        ++..+++.+.+.++++|++|+|||+.
T Consensus        70 --s~~em~~~v~~~~~~~Dili~aAAvs   95 (232)
T 2gk4_A           70 --NTKDLLIEMQERVQDYQVLIHSMAVS   95 (232)
T ss_dssp             --SHHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred             --HHHHHHHHHHHhcCCCCEEEEcCccc
Confidence              45555666666678899999999985

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.07  E-value=1.6e-12  Score=92.85  Aligned_cols=77  Identities=18%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++++++|||||+|.||.++++.|+++|++|++++|+..........+........+.++.+|++                
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~----------------   68 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS----------------   68 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT----------------
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc----------------
Confidence            4578999999999999999999999999999999976521000001111000123444555554                


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                       ++|+|||+||...
T Consensus        69 -~~d~vi~~a~~~~   81 (321)
T 3vps_A           69 -DVRLVYHLASHKS   81 (321)
T ss_dssp             -TEEEEEECCCCCC
T ss_pred             -cCCEEEECCccCC
Confidence             6999999999754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.05  E-value=1.9e-10  Score=87.79  Aligned_cols=87  Identities=18%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      ++++|||||+|.||.++++.|+++|++|++++|+....+                .+.+|+.+.         ....+.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~----------------~v~~d~~~~---------~~~~l~~  201 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG----------------KRFWDPLNP---------ASDLLDG  201 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT----------------CEECCTTSC---------CTTTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc----------------ceeecccch---------hHHhcCC
Confidence            568999999999999999999999999999999876421                145677532         1233457


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +|+|||+||..... ..+.+.+...+++|+.|+
T Consensus       202 ~D~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~gt  233 (516)
T 3oh8_A          202 ADVLVHLAGEPIFG-RFNDSHKEAIRESRVLPT  233 (516)
T ss_dssp             CSEEEECCCC------CCGGGHHHHHHHTHHHH
T ss_pred             CCEEEECCCCcccc-ccchhHHHHHHHHHHHHH
Confidence            99999999975321 344556677888888765

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=99.03  E-value=1.3e-10  Score=89.04  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=64.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|+++|||+ ||+|+++++.|++.|++|++++|+.++++++...+     +.++.    ++.+   +    ++.  .
T Consensus       361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~-----~~~~~----~~~d---l----~~~--~  421 (523)
T 2o7s_A          361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAI-----GGKAL----SLTD---L----DNY--H  421 (523)
T ss_dssp             -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHT-----TC-CE----ETTT---T----TTC---
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCcee----eHHH---h----hhc--c
Confidence            467899999999 59999999999999999999999988877766554     22222    2222   1    000  1


Q ss_pred             CCCccEEEECcccCC-C------CCccCHHHHHHHhhhccccc
Q 042455          101 ALPLNILINKAGICG-T------PFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       101 ~~~id~lv~~ag~~~-~------~~~~~~~~~~~~~~~n~~g~  136 (138)
                      .+.+|++|||+|+.. +      ..+.+.+.|..++++|+.+.
T Consensus       422 ~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~  464 (523)
T 2o7s_A          422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPR  464 (523)
T ss_dssp             -CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSS
T ss_pred             ccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCc
Confidence            235899999999742 1      22355677888999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.02  E-value=8.3e-10  Score=77.77  Aligned_cols=70  Identities=14%  Similarity=0.063  Sum_probs=57.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++++|||+ |.||.++++.|+++|++|++++|+.+.......        ..+.++.+|++|.+            +.++
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~------------~~~~   64 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS------------LDGV   64 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC------------CTTC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc------------cCCC
Confidence            67999998 999999999999999999999999876554321        34788899999822            4579


Q ss_pred             cEEEECcccCC
Q 042455          105 NILINKAGICG  115 (138)
Q Consensus       105 d~lv~~ag~~~  115 (138)
                      |++||+|+...
T Consensus        65 d~vi~~a~~~~   75 (286)
T 3ius_A           65 THLLISTAPDS   75 (286)
T ss_dssp             CEEEECCCCBT
T ss_pred             CEEEECCCccc
Confidence            99999999653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.97  E-value=1.4e-09  Score=81.90  Aligned_cols=79  Identities=18%  Similarity=0.222  Sum_probs=61.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |++|+++|+| +|++|+++++.|++.|++|++++|+.++++++..    ..  ..+..+.+|+++.+++.++++      
T Consensus         1 M~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~----~~--~~~~~~~~Dv~d~~~l~~~l~------   67 (450)
T 1ff9_A            1 MATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA----GV--QHSTPISLDVNDDAALDAEVA------   67 (450)
T ss_dssp             -CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTT----TC--TTEEEEECCTTCHHHHHHHHT------
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHH----hc--CCceEEEeecCCHHHHHHHHc------
Confidence            3578899998 7999999999999999999999998766544322    21  236678899999988877653      


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                       ++|+|||+++..
T Consensus        68 -~~DvVIn~a~~~   79 (450)
T 1ff9_A           68 -KHDLVISLIPYT   79 (450)
T ss_dssp             -TSSEEEECCC--
T ss_pred             -CCcEEEECCccc
Confidence             589999999863

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.97  E-value=1.8e-09  Score=77.97  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=60.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|++++||+++++.+...|++|+++++++++.+.. .++     +..   ..+|.++.+++.+.+.+...  +
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~-----g~~---~~~d~~~~~~~~~~~~~~~~--~  213 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI-----GFD---AAFNYKTVNSLEEALKKASP--D  213 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCS---EEEETTSCSCHHHHHHHHCT--T
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc-----CCc---EEEecCCHHHHHHHHHHHhC--C
Confidence            589999999999999999999999999999999987766554 332     222   23577764455555555433  5


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+|+|.
T Consensus       214 ~~d~vi~~~g~  224 (333)
T 1v3u_A          214 GYDCYFDNVGG  224 (333)
T ss_dssp             CEEEEEESSCH
T ss_pred             CCeEEEECCCh
Confidence            89999999994

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.92  E-value=3.8e-09  Score=70.89  Aligned_cols=81  Identities=11%  Similarity=0.163  Sum_probs=57.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..+++++|+|+++|||+++++.+...|++|+++++++++.+..    +..  +..   ..+|.++.+..+.+.+...  .
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~----~~~--g~~---~~~d~~~~~~~~~~~~~~~--~  105 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML----SRL--GVE---YVGDSRSVDFADEILELTD--G  105 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----HTT--CCS---EEEETTCSTHHHHHHHHTT--T
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHc--CCC---EEeeCCcHHHHHHHHHHhC--C
Confidence            3589999999999999999999999999999999987665432    222  322   1347776554444443321  1


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +++|++|+|+|.
T Consensus       106 ~~~D~vi~~~g~  117 (198)
T 1pqw_A          106 YGVDVVLNSLAG  117 (198)
T ss_dssp             CCEEEEEECCCT
T ss_pred             CCCeEEEECCch
Confidence            369999999983

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.91  E-value=6.3e-10  Score=79.17  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|+++|+|++ |+|+++++.|++.| +|++++|+.++++++.+++..... ... .+.+|+++.          .+
T Consensus       124 ~~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~-~~~-~~~~d~~~~----------~~  189 (287)
T 1nvt_A          124 GRVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN-KKF-GEEVKFSGL----------DV  189 (287)
T ss_dssp             CCCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT-CCH-HHHEEEECT----------TC
T ss_pred             CCcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcc-ccc-ceeEEEeeH----------HH
Confidence            35789999999997 99999999999999 999999998888777766643210 000 123344441          34


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      .++++|++|||+|...
T Consensus       190 ~~~~~DilVn~ag~~~  205 (287)
T 1nvt_A          190 DLDGVDIIINATPIGM  205 (287)
T ss_dssp             CCTTCCEEEECSCTTC
T ss_pred             hhCCCCEEEECCCCCC
Confidence            5678999999999753

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.87  E-value=9.1e-09  Score=77.80  Aligned_cols=89  Identities=13%  Similarity=0.174  Sum_probs=61.6

Q ss_pred             CchhhhccCCCCCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHH
Q 042455           11 STAEEVTQGIDAAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        11 ~~~~~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      +++.+-.-..++++++++|+|+ |++|.++++.|++. |++|.+++|+.++++++...       ..+..+.+|+++.++
T Consensus        10 ~~~~~~~~~~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~~~~~~~D~~d~~~   81 (467)
T 2axq_A           10 HHHSSGHIEGRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SGSKAISLDVTDDSA   81 (467)
T ss_dssp             -------------CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GTCEEEECCTTCHHH
T ss_pred             ccccCCccccCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cCCcEEEEecCCHHH
Confidence            3344444556778899999997 99999999999998 67999999998776654432       124566899999888


Q ss_pred             HHHHHHHHHhcCCCccEEEECcccC
Q 042455           90 VRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      +.++++       .+|+|||+++..
T Consensus        82 l~~~l~-------~~DvVIn~tp~~   99 (467)
T 2axq_A           82 LDKVLA-------DNDVVISLIPYT   99 (467)
T ss_dssp             HHHHHH-------TSSEEEECSCGG
T ss_pred             HHHHHc-------CCCEEEECCchh
Confidence            777664       589999999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.81  E-value=2.2e-08  Score=72.72  Aligned_cols=80  Identities=18%  Similarity=0.164  Sum_probs=60.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|++++||+++++.+...|++|+++++++++.+.. .++     +..   ..+|+++.+++.+.+.++...  
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~-----g~~---~~~d~~~~~~~~~~~~~~~~~--  237 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSI-----GGE---VFIDFTKEKDIVGAVLKATDG--  237 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHT-----TCC---EEEETTTCSCHHHHHHHHHTS--
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHc-----CCc---eEEecCccHhHHHHHHHHhCC--
Confidence            589999999999999999999999999999999988776432 222     322   234877555666666665443  


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+++|.
T Consensus       238 ~~D~vi~~~g~  248 (347)
T 2hcy_A          238 GAHGVINVSVS  248 (347)
T ss_dssp             CEEEEEECSSC
T ss_pred             CCCEEEECCCc
Confidence            79999999985

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.80  E-value=8.8e-08  Score=69.00  Aligned_cols=85  Identities=24%  Similarity=0.307  Sum_probs=65.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC---cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN---MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ..++++|+++|+|+ ||+|++++..|++.|+ +|.++.|+   .++++++.+++.... +..  ....++.+.+++...+
T Consensus       149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~-~~~--~~~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          149 GHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT-DCK--AQLFDIEDHEQLRKEI  224 (315)
T ss_dssp             TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-SCE--EEEEETTCHHHHHHHH
T ss_pred             CCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc-CCc--eEEeccchHHHHHhhh
Confidence            34678999999998 7999999999999998 89999999   778888877776553 233  3345666666655443


Q ss_pred             HHHHhcCCCccEEEECcccC
Q 042455           95 SDFTARALPLNILINKAGIC  114 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~  114 (138)
                      .       ..|++||+..+.
T Consensus       225 ~-------~aDiIINaTp~G  237 (315)
T 3tnl_A          225 A-------ESVIFTNATGVG  237 (315)
T ss_dssp             H-------TCSEEEECSSTT
T ss_pred             c-------CCCEEEECccCC
Confidence            3       469999998764

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.76  E-value=9.9e-09  Score=74.89  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=47.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +++||||+|.||.+++++|+++|+ +|+.++|+                           +|.+++.++++.       +
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~~-------~   47 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALLK-------A   47 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHHH-------C
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhcc-------C
Confidence            599999999999999999999998 77776664                           678888887763       7


Q ss_pred             cEEEECcccCC
Q 042455          105 NILINKAGICG  115 (138)
Q Consensus       105 d~lv~~ag~~~  115 (138)
                      |++||+||...
T Consensus        48 d~Vih~a~~~~   58 (369)
T 3st7_A           48 DFIVHLAGVNR   58 (369)
T ss_dssp             SEEEECCCSBC
T ss_pred             CEEEECCcCCC
Confidence            99999999754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.76  E-value=1.6e-08  Score=73.30  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|++++||.++++.+...|++|+++++++++.+.+.+++     +...   .+|.++.+++.+.+.++..  +
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~-----g~~~---~~d~~~~~~~~~~~~~~~~--~  224 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF-----GFDD---AFNYKEESDLTAALKRCFP--N  224 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS-----CCSE---EEETTSCSCSHHHHHHHCT--T
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCce---EEecCCHHHHHHHHHHHhC--C
Confidence            5899999999999999999999999999999999877655433222     3321   2466654444445554432  5


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+|+|.
T Consensus       225 ~~d~vi~~~g~  235 (345)
T 2j3h_A          225 GIDIYFENVGG  235 (345)
T ss_dssp             CEEEEEESSCH
T ss_pred             CCcEEEECCCH
Confidence            79999999984

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.75  E-value=5.4e-08  Score=70.25  Aligned_cols=80  Identities=11%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|++++||+++++.+...|++|+++++++++.+.+. ++     +..   ..+|.++.+..+.+.+...  ..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~-----g~~---~~~d~~~~~~~~~i~~~~~--~~  213 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KL-----GCH---HTINYSTQDFAEVVREITG--GK  213 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCS---EEEETTTSCHHHHHHHHHT--TC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCC---EEEECCCHHHHHHHHHHhC--CC
Confidence            5889999999999999999999999999999999877665543 22     322   1347766554444444322  23


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+|+|.
T Consensus       214 ~~d~vi~~~g~  224 (333)
T 1wly_A          214 GVDVVYDSIGK  224 (333)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCeEEEECCcH
Confidence            69999999995

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.74  E-value=3.7e-08  Score=70.94  Aligned_cols=79  Identities=10%  Similarity=0.100  Sum_probs=58.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+||+++||+++++.+...|++|+++++++++.+.+.. +     +...   .+|.++.+..+.+.+...  ..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~-----g~~~---~~~~~~~~~~~~~~~~~~--~~  208 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A-----GAWQ---VINYREEDLVERLKEITG--GK  208 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H-----TCSE---EEETTTSCHHHHHHHHTT--TC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c-----CCCE---EEECCCccHHHHHHHHhC--CC
Confidence            58999999999999999999999999999999998776654432 2     3221   347666555444444321  23


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      ++|++|+|+|
T Consensus       209 ~~D~vi~~~g  218 (327)
T 1qor_A          209 KVRVVYDSVG  218 (327)
T ss_dssp             CEEEEEECSC
T ss_pred             CceEEEECCc
Confidence            6999999998

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.72  E-value=6.4e-08  Score=61.46  Aligned_cols=75  Identities=16%  Similarity=0.178  Sum_probs=58.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+ |.+|..+++.|.+.|++|++++++++..+....    .  +  +.++.+|.++++.++++      ...
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~--~--~~~~~gd~~~~~~l~~~------~~~   69 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E--G--FDAVIADPTDESFYRSL------DLE   69 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T--T--CEEEECCTTCHHHHHHS------CCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C--C--CcEEECCCCCHHHHHhC------Ccc
Confidence            3467999998 779999999999999999999999876555432    1  2  56778999998876654      235


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      +.|++|.+.+
T Consensus        70 ~~d~vi~~~~   79 (141)
T 3llv_A           70 GVSAVLITGS   79 (141)
T ss_dssp             TCSEEEECCS
T ss_pred             cCCEEEEecC
Confidence            6899999887

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.71  E-value=6.6e-08  Score=70.47  Aligned_cols=80  Identities=11%  Similarity=0.149  Sum_probs=58.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+||+++||+++++.+...|++|+++++++++.+.+ .++     +..   ..+|.++.+..+.+.+..  ...
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~~~~~~--~~~  230 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL-----GAA---AGFNYKKEDFSEATLKFT--KGA  230 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH-----TCS---EEEETTTSCHHHHHHHHT--TTS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCc---EEEecCChHHHHHHHHHh--cCC
Confidence            588999999999999999999999999999999988776654 333     322   235666544444443322  113


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+|+|.
T Consensus       231 ~~d~vi~~~G~  241 (354)
T 2j8z_A          231 GVNLILDCIGG  241 (354)
T ss_dssp             CEEEEEESSCG
T ss_pred             CceEEEECCCc
Confidence            69999999985

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.70  E-value=2.2e-08  Score=63.39  Aligned_cols=77  Identities=14%  Similarity=0.109  Sum_probs=55.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +++++++|+|+ |.+|..+++.|.+.|++|++++++++..+.    +...  +  ...+..|.++.+.+.++      ..
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~----~~~~--~--~~~~~~d~~~~~~l~~~------~~   68 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNA----YASY--A--THAVIANATEENELLSL------GI   68 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHT----TTTT--C--SEEEECCTTCHHHHHTT------TG
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHh--C--CEEEEeCCCCHHHHHhc------CC
Confidence            45678999998 999999999999999999999998655432    2111  2  34567898887655432      13


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      .+.|++|++++.
T Consensus        69 ~~~d~vi~~~~~   80 (144)
T 2hmt_A           69 RNFEYVIVAIGA   80 (144)
T ss_dssp             GGCSEEEECCCS
T ss_pred             CCCCEEEECCCC
Confidence            468999999984

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.69  E-value=4.5e-08  Score=71.34  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             CC--CEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           23 AG--VTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        23 ~~--k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+  ++++|+|++++||+++++.+...|+ +|+++++++++.+.+..++     +..   ..+|.++.+..+. +.+...
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~-----g~~---~~~d~~~~~~~~~-~~~~~~  228 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL-----GFD---AAINYKKDNVAEQ-LRESCP  228 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS-----CCS---EEEETTTSCHHHH-HHHHCT
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-----CCc---eEEecCchHHHHH-HHHhcC
Confidence            47  8999999999999999999999999 9999999876655443222     322   2357665433333 333222


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                        +++|++|+|+|.
T Consensus       229 --~~~d~vi~~~G~  240 (357)
T 2zb4_A          229 --AGVDVYFDNVGG  240 (357)
T ss_dssp             --TCEEEEEESCCH
T ss_pred             --CCCCEEEECCCH
Confidence              279999999983

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.68  E-value=7.1e-08  Score=69.70  Aligned_cols=81  Identities=14%  Similarity=0.263  Sum_probs=58.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -.+++++|+|++++||.++++.+...|++|+++++++++.+.+.+++     +...   ..|..+.+..+.+.+. .  .
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~~~~-~--~  216 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL-----GFDG---AIDYKNEDLAAGLKRE-C--P  216 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT-----CCSE---EEETTTSCHHHHHHHH-C--T
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCCE---EEECCCHHHHHHHHHh-c--C
Confidence            36899999999999999999999999999999999887766543332     3321   2466554433333332 2  2


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +++|++|+|+|.
T Consensus       217 ~~~d~vi~~~g~  228 (336)
T 4b7c_A          217 KGIDVFFDNVGG  228 (336)
T ss_dssp             TCEEEEEESSCH
T ss_pred             CCceEEEECCCc
Confidence            479999999994

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.65  E-value=6.6e-08  Score=68.19  Aligned_cols=77  Identities=13%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++.+|+++|+|+ ||+|+++++.|++.|++|++++|+.++++++.+++...  + .+.  ..|+   +++       . 
T Consensus       115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~--~-~~~--~~~~---~~~-------~-  177 (271)
T 1nyt_A          115 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT--G-SIQ--ALSM---DEL-------E-  177 (271)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG--S-SEE--ECCS---GGG-------T-
T ss_pred             cCcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc--C-Cee--EecH---HHh-------c-
Confidence            3578999999998 69999999999999999999999988887776655321  1 221  1232   111       1 


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                      . ++.|++||++|..
T Consensus       178 ~-~~~DivVn~t~~~  191 (271)
T 1nyt_A          178 G-HEFDLIINATSSG  191 (271)
T ss_dssp             T-CCCSEEEECCSCG
T ss_pred             c-CCCCEEEECCCCC
Confidence            1 6899999999975

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.65  E-value=8.1e-08  Score=68.06  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|-||..+++.|+++|++|.++.|++..              ..+   ..|     .+      ....+..+|
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~--------------~~~---~~~-----~~------~~~~l~~~d   53 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP--------------GRI---TWD-----EL------AASGLPSCD   53 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT--------------TEE---EHH-----HH------HHHCCCSCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc--------------Cee---ecc-----hh------hHhhccCCC
Confidence            48999999999999999999999999999997542              111   111     11      123456799


Q ss_pred             EEEECcccC--CCCCccCHHHHHHHhhhcccc
Q 042455          106 ILINKAGIC--GTPFMLSKDNIELHFATNHLG  135 (138)
Q Consensus       106 ~lv~~ag~~--~~~~~~~~~~~~~~~~~n~~g  135 (138)
                      .+||.||..  .+....+.+.....++.|+.+
T Consensus        54 ~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~   85 (298)
T 4b4o_A           54 AAVNLAGENILNPLRRWNETFQKEVLGSRLET   85 (298)
T ss_dssp             EEEECCCCCSSCTTSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEeccCcccchhhhhhhhhhhhhhhHHHHH
Confidence            999999853  222234555555666666544

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.65  E-value=1.4e-07  Score=68.77  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=57.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|++++||+++++.+...|++|+++++++++.+.. .++     +..   ..+|.++.+..+.+.+..  ...
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~-----ga~---~~~d~~~~~~~~~~~~~~--~~~  238 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQN-----GAH---EVFNHREVNYIDKIKKYV--GEK  238 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCS---EEEETTSTTHHHHHHHHH--CTT
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HHc-----CCC---EEEeCCCchHHHHHHHHc--CCC
Confidence            588999999999999999999999999999999987766532 222     322   235666654444443332  123


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+|+|.
T Consensus       239 ~~D~vi~~~G~  249 (351)
T 1yb5_A          239 GIDIIIEMLAN  249 (351)
T ss_dssp             CEEEEEESCHH
T ss_pred             CcEEEEECCCh
Confidence            79999999984

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.63  E-value=3e-07  Score=67.48  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+++++|+|+ |+||+++++.+...|++|++++|++++.+.....+     +..   +.+|.++.+++.+++.     
T Consensus       163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~-----g~~---~~~~~~~~~~l~~~~~-----  228 (369)
T 2eez_A          163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF-----GGR---VITLTATEANIKKSVQ-----  228 (369)
T ss_dssp             BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----TTS---EEEEECCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc-----Cce---EEEecCCHHHHHHHHh-----
Confidence            477899999999 89999999999999999999999987765543322     232   3567778877766654     


Q ss_pred             CCCccEEEECcccC
Q 042455          101 ALPLNILINKAGIC  114 (138)
Q Consensus       101 ~~~id~lv~~ag~~  114 (138)
                        ..|++|+++|..
T Consensus       229 --~~DvVi~~~g~~  240 (369)
T 2eez_A          229 --HADLLIGAVLVP  240 (369)
T ss_dssp             --HCSEEEECCC--
T ss_pred             --CCCEEEECCCCC
Confidence              479999999864

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.60  E-value=1.8e-07  Score=66.41  Aligned_cols=82  Identities=17%  Similarity=0.219  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++++|+++|+|+ ||+|++++..|++.|+ +|.+++|+.++++++.+++....+...+.  ..+..+   +.+.+.   
T Consensus       123 ~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~--~~~~~~---l~~~l~---  193 (283)
T 3jyo_A          123 PNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDARG---IEDVIA---  193 (283)
T ss_dssp             TTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEE--EECSTT---HHHHHH---
T ss_pred             cCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEE--EcCHHH---HHHHHh---
Confidence            3578999999998 7999999999999998 79999999999988888776554333333  233333   333333   


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                          ..|++||+....
T Consensus       194 ----~~DiVInaTp~G  205 (283)
T 3jyo_A          194 ----AADGVVNATPMG  205 (283)
T ss_dssp             ----HSSEEEECSSTT
T ss_pred             ----cCCEEEECCCCC
Confidence                269999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.56  E-value=1.4e-06  Score=62.62  Aligned_cols=84  Identities=18%  Similarity=0.265  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC---cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN---MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      .++.+|+++|+|+ ||.|++++..|++.|+ +|.++.|+   .++++++.+++.... +..+.  ..+..+.+.....+.
T Consensus       144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-~~~v~--~~~~~~l~~~~~~l~  219 (312)
T 3t4e_A          144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-DCVVT--VTDLADQHAFTEALA  219 (312)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-SCEEE--EEETTCHHHHHHHHH
T ss_pred             CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-CcceE--EechHhhhhhHhhcc
Confidence            4678999999998 7999999999999998 89999999   777888777776543 23333  345555433333333


Q ss_pred             HHHhcCCCccEEEECcccC
Q 042455           96 DFTARALPLNILINKAGIC  114 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~  114 (138)
                             ..|++||+....
T Consensus       220 -------~~DiIINaTp~G  231 (312)
T 3t4e_A          220 -------SADILTNGTKVG  231 (312)
T ss_dssp             -------HCSEEEECSSTT
T ss_pred             -------CceEEEECCcCC
Confidence                   369999998765

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=98.56  E-value=3.1e-07  Score=66.70  Aligned_cols=80  Identities=18%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+++++|+|++++||+++++.+... |++|+++++++++.+.. .++     +...   ..|.++.+..+.+ .+.... 
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~~-~~~~~~-  238 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRA-----GADY---VINASMQDPLAEI-RRITES-  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHH-----TCSE---EEETTTSCHHHHH-HHHTTT-
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh-----CCCE---EecCCCccHHHHH-HHHhcC-
Confidence            6889999999999999999999998 99999999987776544 233     3222   2355554333322 222211 


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +++|++|+++|.
T Consensus       239 ~~~d~vi~~~g~  250 (347)
T 1jvb_A          239 KGVDAVIDLNNS  250 (347)
T ss_dssp             SCEEEEEESCCC
T ss_pred             CCceEEEECCCC
Confidence            589999999994

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.50  E-value=8.3e-07  Score=64.62  Aligned_cols=79  Identities=16%  Similarity=0.292  Sum_probs=57.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+||+++||.++++.+...|++|+++++++++.+.+. ++     +...   ..|..+.+..+.+.+..   .+
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---~~~~~~~~~~~~~~~~~---~~  234 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RL-----GAKR---GINYRSEDFAAVIKAET---GQ  234 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTTSCHHHHHHHHH---SS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCCE---EEeCCchHHHHHHHHHh---CC
Confidence            5889999999999999999999999999999999887765443 23     3322   24555544434333332   35


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+++|.
T Consensus       235 g~Dvvid~~g~  245 (353)
T 4dup_A          235 GVDIILDMIGA  245 (353)
T ss_dssp             CEEEEEESCCG
T ss_pred             CceEEEECCCH
Confidence            79999999984

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.44  E-value=1.3e-06  Score=63.31  Aligned_cols=79  Identities=19%  Similarity=0.279  Sum_probs=56.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+++++|+.+++.+...|++|+++++++++.+.+. ++     +...   .+|.++.+-.+. +.+.. ...
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~-----ga~~---~~d~~~~~~~~~-~~~~~-~~~  234 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL-----GADE---TVNYTHPDWPKE-VRRLT-GGK  234 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTSTTHHHH-HHHHT-TTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc-----CCCE---EEcCCcccHHHH-HHHHh-CCC
Confidence            5789999999999999999999999999999999887765543 23     3221   247665432222 33322 124


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      ++|++|+++|
T Consensus       235 ~~d~vi~~~g  244 (343)
T 2eih_A          235 GADKVVDHTG  244 (343)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            7999999998

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.44  E-value=1.2e-06  Score=56.39  Aligned_cols=79  Identities=16%  Similarity=0.121  Sum_probs=57.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      |.++.++|+|+ |.+|..+++.|.+.|++|.++++++ +..+.....+     ...+.++..|.++++.++++      .
T Consensus         1 ~~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a------~   68 (153)
T 1id1_A            1 HRKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA------G   68 (153)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH------T
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc------C
Confidence            34567888986 9999999999999999999999974 4433333222     12367788999988876543      1


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                      ..+.|.+|.+.+
T Consensus        69 i~~ad~vi~~~~   80 (153)
T 1id1_A           69 IDRCRAILALSD   80 (153)
T ss_dssp             TTTCSEEEECSS
T ss_pred             hhhCCEEEEecC
Confidence            235788888776

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=98.43  E-value=1.2e-07  Score=68.53  Aligned_cols=96  Identities=14%  Similarity=0.003  Sum_probs=59.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-------EEEEEecCc--chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-------HVIMADRNM--AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-------~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      .+++||||+|.||..++..|+.+|.       +|+++++++  +..+....++...  ...+  . .|+.+.+++...+ 
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~--~~~~--~-~di~~~~~~~~a~-   78 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--AFPL--L-AGLEATDDPKVAF-   78 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--TCTT--E-EEEEEESCHHHHT-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc--cccc--c-CCeEeccChHHHh-
Confidence            3699999999999999999999885       799998864  2223223344321  1111  1 3554433333332 


Q ss_pred             HHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           96 DFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                            ...|++||.||..+... .+.   .+.+++|+.++
T Consensus        79 ------~~~D~Vih~Ag~~~~~~-~~~---~~~~~~Nv~~t  109 (327)
T 1y7t_A           79 ------KDADYALLVGAAPRKAG-MER---RDLLQVNGKIF  109 (327)
T ss_dssp             ------TTCSEEEECCCCCCCTT-CCH---HHHHHHHHHHH
T ss_pred             ------CCCCEEEECCCcCCCCC-CCH---HHHHHHHHHHH
Confidence                  35899999999864322 233   34566666543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=98.43  E-value=7.2e-07  Score=66.84  Aligned_cols=86  Identities=19%  Similarity=0.250  Sum_probs=58.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEE--ecCC---------CHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVME--LDLS---------SLASV   90 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~--~D~~---------~~~~~   90 (138)
                      -.|++++|+|++|+||.+.++.+...|++|+++++++++.+.+ .++     +....+..  .|+.         +.+++
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~~i~~~~~~~~~~~~~~~~~~~~~~  292 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV-RAL-----GCDLVINRAELGITDDIADDPRRVVETG  292 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCCCEEEHHHHTCCTTGGGCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-Hhc-----CCCEEEecccccccccccccccccchhh
Confidence            3589999999999999999998888999999999887766543 222     33222221  1221         12344


Q ss_pred             HHHHHHHHhcCC-CccEEEECccc
Q 042455           91 RKFASDFTARAL-PLNILINKAGI  113 (138)
Q Consensus        91 ~~~~~~~~~~~~-~id~lv~~ag~  113 (138)
                      +.+.+.+.+..+ .+|++|+++|.
T Consensus       293 ~~~~~~v~~~~g~g~Dvvid~~G~  316 (447)
T 4a0s_A          293 RKLAKLVVEKAGREPDIVFEHTGR  316 (447)
T ss_dssp             HHHHHHHHHHHSSCCSEEEECSCH
T ss_pred             hHHHHHHHHHhCCCceEEEECCCc
Confidence            445555554433 69999999984

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=98.39  E-value=5.9e-06  Score=58.86  Aligned_cols=90  Identities=13%  Similarity=0.350  Sum_probs=72.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc------------------chhHHHHHHHHhcCCCCeeEEEEe
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM------------------AAGRDVKVAIVMQNPAAKVDVMEL   82 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~   82 (138)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.+++.+.                  .+.+.+.+.+....|..++..+..
T Consensus        34 L~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           34 IRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             HhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            56789999988 6999999999999997 899998865                  677888888888888899999999


Q ss_pred             cCCCHHHHHHHHHHHHhc----CCCccEEEECcc
Q 042455           83 DLSSLASVRKFASDFTAR----ALPLNILINKAG  112 (138)
Q Consensus        83 D~~~~~~~~~~~~~~~~~----~~~id~lv~~ag  112 (138)
                      ++++.+.+..+++.+...    ....|++|.+..
T Consensus       113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D  146 (292)
T 3h8v_A          113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD  146 (292)
T ss_dssp             CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred             cCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence            998877777777654321    136899987764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.38  E-value=7.1e-08  Score=72.95  Aligned_cols=45  Identities=22%  Similarity=0.347  Sum_probs=39.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK   65 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   65 (138)
                      .++.||+++|||++ +||+++|+.|...|++|+++++++....+..
T Consensus       261 ~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa  305 (488)
T 3ond_A          261 VMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQAT  305 (488)
T ss_dssp             CCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            45889999999987 9999999999999999999999876655433

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=98.37  E-value=2e-06  Score=62.27  Aligned_cols=80  Identities=15%  Similarity=0.149  Sum_probs=56.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|++++|+|++++||...++.+...|++|+++++++++.+.+.+ +     +...   ..|..+.+..+.+.+..  ...
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l-----ga~~---~~~~~~~~~~~~~~~~~--~~~  212 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-L-----GAAY---VIDTSTAPLYETVMELT--NGI  212 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H-----TCSE---EEETTTSCHHHHHHHHT--TTS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-C-----CCcE---EEeCCcccHHHHHHHHh--CCC
Confidence            58899999999999999999888889999999999887665432 3     3322   23554433333332221  123


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++|+++|.
T Consensus       213 g~Dvvid~~g~  223 (340)
T 3gms_A          213 GADAAIDSIGG  223 (340)
T ss_dssp             CEEEEEESSCH
T ss_pred             CCcEEEECCCC
Confidence            69999999984

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.37  E-value=2.9e-06  Score=59.76  Aligned_cols=78  Identities=12%  Similarity=0.183  Sum_probs=57.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++.+|+++|+|+ ||+|++++..|++.|++|.++.|+.++++++.+.+...  + .+..  .|+.   +       +. 
T Consensus       115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~--~-~~~~--~~~~---~-------~~-  177 (272)
T 1p77_A          115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY--G-NIQA--VSMD---S-------IP-  177 (272)
T ss_dssp             CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG--S-CEEE--EEGG---G-------CC-
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc--C-CeEE--eeHH---H-------hc-
Confidence            3578899999998 79999999999999999999999998888877766432  1 2222  2321   1       10 


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      . +..|++||+++...
T Consensus       178 ~-~~~DivIn~t~~~~  192 (272)
T 1p77_A          178 L-QTYDLVINATSAGL  192 (272)
T ss_dssp             C-SCCSEEEECCCC--
T ss_pred             c-CCCCEEEECCCCCC
Confidence            1 47999999999753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.37  E-value=1.2e-06  Score=63.13  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=56.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -.+++++|+||+++||.+.++.+...|++|+++++++++.+.. .++     +...   ..|..+.+..+.+.+..  ..
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~-----ga~~---~~~~~~~~~~~~~~~~~--~~  215 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEY-----GAEY---LINASKEDILRQVLKFT--NG  215 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-----TCSE---EEETTTSCHHHHHHHHT--TT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc-----CCcE---EEeCCCchHHHHHHHHh--CC
Confidence            3689999999999999999999989999999999987766532 222     3222   23554433333332221  12


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      .++|++|+++|.
T Consensus       216 ~g~D~vid~~g~  227 (334)
T 3qwb_A          216 KGVDASFDSVGK  227 (334)
T ss_dssp             SCEEEEEECCGG
T ss_pred             CCceEEEECCCh
Confidence            369999999984

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.36  E-value=1.8e-06  Score=62.08  Aligned_cols=80  Identities=15%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+++++|++.++.+...|++|+++++++++.+.+. ++     +...   ..|.++.+..+.+.+..  ...
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----Ga~~---~~~~~~~~~~~~~~~~~--~~~  208 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-AL-----GAWE---TIDYSHEDVAKRVLELT--DGK  208 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTTSCHHHHHHHHT--TTC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCCE---EEeCCCccHHHHHHHHh--CCC
Confidence            5889999999999999999998889999999999887765443 23     3222   23555444333333322  123


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++|+++|.
T Consensus       209 g~Dvvid~~g~  219 (325)
T 3jyn_A          209 KCPVVYDGVGQ  219 (325)
T ss_dssp             CEEEEEESSCG
T ss_pred             CceEEEECCCh
Confidence            69999999985

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=98.34  E-value=2.8e-06  Score=63.89  Aligned_cols=86  Identities=16%  Similarity=0.215  Sum_probs=60.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEE--ec--------CCCHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVME--LD--------LSSLASVR   91 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~--~D--------~~~~~~~~   91 (138)
                      -.|++++|+|++|++|...++.+...|++|+++++++++.+.+ .++     +....+-.  .|        ..+.++++
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~vi~~~~~d~~~~~~~~~~~~~~~~  300 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RAM-----GAEAIIDRNAEGYRFWKDENTQDPKEWK  300 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHH-----TCCEEEETTTTTCCSEEETTEECHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH-Hhh-----CCcEEEecCcCcccccccccccchHHHH
Confidence            3588999999999999999998888999999998887766544 333     33222211  11        23556666


Q ss_pred             HHHHHHHhcC--CCccEEEECccc
Q 042455           92 KFASDFTARA--LPLNILINKAGI  113 (138)
Q Consensus        92 ~~~~~~~~~~--~~id~lv~~ag~  113 (138)
                      ++.+.+.+..  ..+|++|.++|.
T Consensus       301 ~~~~~i~~~t~g~g~Dvvid~~G~  324 (456)
T 3krt_A          301 RFGKRIRELTGGEDIDIVFEHPGR  324 (456)
T ss_dssp             HHHHHHHHHHTSCCEEEEEECSCH
T ss_pred             HHHHHHHHHhCCCCCcEEEEcCCc
Confidence            6666666543  379999999984

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=98.31  E-value=4.1e-06  Score=58.31  Aligned_cols=82  Identities=16%  Similarity=0.284  Sum_probs=64.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.+++++.                   .+.+.+.+.+....|..++..+.
T Consensus        29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            56789999997 6999999999999997 899999987                   78888888888877777777777


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      .+++ .+.+..++.       ..|++|.+..
T Consensus       108 ~~~~-~~~~~~~~~-------~~DvVi~~~d  130 (249)
T 1jw9_B          108 ALLD-DAELAALIA-------EHDLVLDCTD  130 (249)
T ss_dssp             SCCC-HHHHHHHHH-------TSSEEEECCS
T ss_pred             ccCC-HhHHHHHHh-------CCCEEEEeCC
Confidence            7775 333333332       4699988875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=98.31  E-value=6.1e-06  Score=59.78  Aligned_cols=79  Identities=28%  Similarity=0.364  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|++++|+|++|+||...++.+...|++|+++++++++.+.+. ++     +....   .|..  +++...+.+... ..
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----ga~~v---~~~~--~~~~~~v~~~~~-~~  226 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SV-----GADIV---LPLE--EGWAKAVREATG-GA  226 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH-----TCSEE---EESS--TTHHHHHHHHTT-TS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc-----CCcEE---ecCc--hhHHHHHHHHhC-CC
Confidence            5889999999999999999999999999999999888765433 23     33221   2333  223333333221 12


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+++|.
T Consensus       227 g~Dvvid~~g~  237 (342)
T 4eye_A          227 GVDMVVDPIGG  237 (342)
T ss_dssp             CEEEEEESCC-
T ss_pred             CceEEEECCch
Confidence            69999999995

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.27  E-value=1e-05  Score=50.58  Aligned_cols=74  Identities=14%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ..++|+|+ |.+|..+++.|.+.|++|.+++++++..+.....    .   .+..+..|.++.+.+.+.      ...+.
T Consensus         5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----~---~~~~~~~d~~~~~~l~~~------~~~~~   70 (140)
T 1lss_A            5 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----I---DALVINGDCTKIKTLEDA------GIEDA   70 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----C---SSEEEESCTTSHHHHHHT------TTTTC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh----c---CcEEEEcCCCCHHHHHHc------CcccC
Confidence            46888987 9999999999999999999999987665543321    1   234567788776654321      23467


Q ss_pred             cEEEECcc
Q 042455          105 NILINKAG  112 (138)
Q Consensus       105 d~lv~~ag  112 (138)
                      |++|.+++
T Consensus        71 d~vi~~~~   78 (140)
T 1lss_A           71 DMYIAVTG   78 (140)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEeeC
Confidence            88888876

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.26  E-value=3.7e-06  Score=61.44  Aligned_cols=75  Identities=20%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc---chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM---AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +.+++++|+|+ |++|...++.+...|++|+++++++   ++.+. ..++     +..  .+  | .+ +-.+.+.+  .
T Consensus       179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~~~~-----ga~--~v--~-~~-~~~~~~~~--~  243 (366)
T 2cdc_A          179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTV-IEET-----KTN--YY--N-SS-NGYDKLKD--S  243 (366)
T ss_dssp             STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHH-HHHH-----TCE--EE--E-CT-TCSHHHHH--H
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHH-HHHh-----CCc--ee--c-hH-HHHHHHHH--h
Confidence            44899999999 9999999998888999999999987   55533 2233     332  22  5 44 22222222  2


Q ss_pred             hcCCCccEEEECccc
Q 042455           99 ARALPLNILINKAGI  113 (138)
Q Consensus        99 ~~~~~id~lv~~ag~  113 (138)
                       . +++|++|+++|.
T Consensus       244 -~-~~~d~vid~~g~  256 (366)
T 2cdc_A          244 -V-GKFDVIIDATGA  256 (366)
T ss_dssp             -H-CCEEEEEECCCC
T ss_pred             -C-CCCCEEEECCCC
Confidence             2 579999999985

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.22  E-value=2.6e-06  Score=60.84  Aligned_cols=78  Identities=22%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++.+|+++|+|+ |++|+++++.|++.|+ +|.++.|+.++++++.+.+....  ..       +.+.+++       .
T Consensus       137 ~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~--~~-------~~~~~~~-------~  199 (297)
T 2egg_A          137 ITLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERR--SA-------YFSLAEA-------E  199 (297)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSS--CC-------EECHHHH-------H
T ss_pred             CCCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhcc--Cc-------eeeHHHH-------H
Confidence            3577999999998 7999999999999998 99999999888777665542110  01       1122222       2


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                      +.....|++|++++..
T Consensus       200 ~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          200 TRLAEYDIIINTTSVG  215 (297)
T ss_dssp             HTGGGCSEEEECSCTT
T ss_pred             hhhccCCEEEECCCCC
Confidence            2234689999999865

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.21  E-value=1.5e-05  Score=56.48  Aligned_cols=76  Identities=14%  Similarity=0.283  Sum_probs=57.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++.+|+++|+|+ ||+|++++..|++.|+ +|.++.|+.++++++.+++....   .+.....+  +   +       .
T Consensus       122 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~~~~--~---l-------~  185 (281)
T 3o8q_A          122 VLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQAFE--Q---L-------K  185 (281)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEEEGG--G---C-------C
T ss_pred             CCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEeeHH--H---h-------c
Confidence            4678999999998 6999999999999996 99999999999888887775431   23333221  1   1       0


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                         ...|++||+....
T Consensus       186 ---~~aDiIInaTp~g  198 (281)
T 3o8q_A          186 ---QSYDVIINSTSAS  198 (281)
T ss_dssp             ---SCEEEEEECSCCC
T ss_pred             ---CCCCEEEEcCcCC
Confidence               3689999998764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.21  E-value=3.9e-06  Score=61.43  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      .+++|.|+ |.+|..+++.|.+ .++|.+++++.+.++...         ..+..+.+|++|.+++.++++       +.
T Consensus        17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~---------~~~~~~~~d~~d~~~l~~~~~-------~~   78 (365)
T 3abi_A           17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK---------EFATPLKVDASNFDKLVEVMK-------EF   78 (365)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT---------TTSEEEECCTTCHHHHHHHHT-------TC
T ss_pred             cEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh---------ccCCcEEEecCCHHHHHHHHh-------CC
Confidence            36889998 9999999998865 578999999877655432         234567899999998877765       36


Q ss_pred             cEEEECcccC
Q 042455          105 NILINKAGIC  114 (138)
Q Consensus       105 d~lv~~ag~~  114 (138)
                      |+||++++..
T Consensus        79 DvVi~~~p~~   88 (365)
T 3abi_A           79 ELVIGALPGF   88 (365)
T ss_dssp             SEEEECCCGG
T ss_pred             CEEEEecCCc
Confidence            9999999753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=98.19  E-value=5.7e-06  Score=60.39  Aligned_cols=79  Identities=15%  Similarity=0.160  Sum_probs=54.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+||++++|...++.+...|++|+++++++++.+.+.. +     +...   ..|..+. ++.+.+.+..  .+
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~-----Ga~~---~~~~~~~-~~~~~~~~~~--~~  230 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-L-----GCDR---PINYKTE-PVGTVLKQEY--PE  230 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T-----TCSE---EEETTTS-CHHHHHHHHC--TT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-c-----CCcE---EEecCCh-hHHHHHHHhc--CC
Confidence            58899999999999999999998899999999998766554322 2     3322   2344432 2233333321  24


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|+++|.
T Consensus       231 g~D~vid~~g~  241 (362)
T 2c0c_A          231 GVDVVYESVGG  241 (362)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCCEEEECCCH
Confidence            69999999984

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.19  E-value=1.1e-05  Score=59.34  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=57.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+.+++++|+|+ |+||+.+++.+...|++|+++++++++.+.....+     +..+   ..+..+.+++..++.     
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~-----g~~~---~~~~~~~~~l~~~l~-----  230 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF-----CGRI---HTRYSSAYELEGAVK-----  230 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----TTSS---EEEECCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc-----CCee---EeccCCHHHHHHHHc-----
Confidence            578999999998 99999999999999999999999987765543322     2222   233445555555443     


Q ss_pred             CCCccEEEECcccC
Q 042455          101 ALPLNILINKAGIC  114 (138)
Q Consensus       101 ~~~id~lv~~ag~~  114 (138)
                        ..|++|++++..
T Consensus       231 --~aDvVi~~~~~p  242 (377)
T 2vhw_A          231 --RADLVIGAVLVP  242 (377)
T ss_dssp             --HCSEEEECCCCT
T ss_pred             --CCCEEEECCCcC
Confidence              479999998754

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.17  E-value=1.7e-05  Score=57.47  Aligned_cols=79  Identities=14%  Similarity=0.036  Sum_probs=54.9

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++++|+||++++|...++.+...|++|+++++++++.+.+. ++     +...   ..|..+.+..+.+.+....  .+
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~-----Ga~~---~~~~~~~~~~~~v~~~~~~--~g  233 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DI-----GAAH---VLNEKAPDFEATLREVMKA--EQ  233 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HH-----TCSE---EEETTSTTHHHHHHHHHHH--HC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCCE---EEECCcHHHHHHHHHHhcC--CC
Confidence            389999999999999999988888999999999888766543 33     3322   2354443333333332211  26


Q ss_pred             ccEEEECccc
Q 042455          104 LNILINKAGI  113 (138)
Q Consensus       104 id~lv~~ag~  113 (138)
                      +|++|+++|.
T Consensus       234 ~D~vid~~g~  243 (349)
T 3pi7_A          234 PRIFLDAVTG  243 (349)
T ss_dssp             CCEEEESSCH
T ss_pred             CcEEEECCCC
Confidence            9999999984

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.17  E-value=5.1e-06  Score=53.49  Aligned_cols=80  Identities=10%  Similarity=0.108  Sum_probs=55.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ....+++++|+|+ |.+|..+++.|.+.|++|+++++++++.+.+..    .   ..+..+..|.++.+.+...      
T Consensus        15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~----~---~g~~~~~~d~~~~~~l~~~------   80 (155)
T 2g1u_A           15 KKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS----E---FSGFTVVGDAAEFETLKEC------   80 (155)
T ss_dssp             --CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT----T---CCSEEEESCTTSHHHHHTT------
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh----c---CCCcEEEecCCCHHHHHHc------
Confidence            3456788999996 899999999999999999999999877543210    1   1234566777776543321      


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                      .....|++|.+.+.
T Consensus        81 ~~~~ad~Vi~~~~~   94 (155)
T 2g1u_A           81 GMEKADMVFAFTND   94 (155)
T ss_dssp             TGGGCSEEEECSSC
T ss_pred             CcccCCEEEEEeCC
Confidence            12357888888773

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.17  E-value=2.3e-05  Score=57.34  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=55.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +.+++++|+|+ |++|+++++.+...|++|++++|++++++.+.....     ..+..   +..+.+++...+.      
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~------  229 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVEL---LYSNSAEIETAVA------  229 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEE---EECCHHHHHHHHH------
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC-----ceeEe---eeCCHHHHHHHHc------
Confidence            56789999999 999999999999999999999999888776554331     12211   2234444433222      


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                       ..|++|++++..
T Consensus       230 -~~DvVI~~~~~~  241 (361)
T 1pjc_A          230 -EADLLIGAVLVP  241 (361)
T ss_dssp             -TCSEEEECCCCT
T ss_pred             -CCCEEEECCCcC
Confidence             589999999864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=98.16  E-value=1e-05  Score=57.56  Aligned_cols=73  Identities=16%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~  101 (138)
                      .|++++|+|++|++|...++.+...|++|+++++++++.+... ++     +...   ..|..+ .+.    .+.+    
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~-----ga~~---~~~~~~~~~~----~~~~----  187 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-AL-----GAEE---AATYAEVPER----AKAW----  187 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HT-----TCSE---EEEGGGHHHH----HHHT----
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc-----CCCE---EEECCcchhH----HHHh----
Confidence            5889999999999999999988889999999999888766542 22     3221   235544 222    2222    


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +++|++|+ +|.
T Consensus       188 ~~~d~vid-~g~  198 (302)
T 1iz0_A          188 GGLDLVLE-VRG  198 (302)
T ss_dssp             TSEEEEEE-CSC
T ss_pred             cCceEEEE-CCH
Confidence            57899999 874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=98.15  E-value=1.2e-05  Score=58.12  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+ +++|...++.+...|++|+++++++++.+.+. ++     +...   .+|..+.+..+. +.+..   +
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---~~d~~~~~~~~~-~~~~~---~  229 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-EL-----GADL---VVNPLKEDAAKF-MKEKV---G  229 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HT-----TCSE---EECTTTSCHHHH-HHHHH---S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HC-----CCCE---EecCCCccHHHH-HHHHh---C
Confidence            5889999999 78999999988889999999999877765432 22     3321   246654332222 33222   5


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++|+++|.
T Consensus       230 ~~d~vid~~g~  240 (339)
T 1rjw_A          230 GVHAAVVTAVS  240 (339)
T ss_dssp             SEEEEEESSCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=98.13  E-value=2.3e-05  Score=56.79  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=54.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+||+|++|...++.+...|++|+++++++++.+.+.+ +     +...   ..|..+  ++.+.+.+.  ..+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-l-----Ga~~---vi~~~~--~~~~~~~~~--~~~  216 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK-M-----GADI---VLNHKE--SLLNQFKTQ--GIE  216 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-H-----TCSE---EECTTS--CHHHHHHHH--TCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c-----CCcE---EEECCc--cHHHHHHHh--CCC
Confidence            58999999999999999999888899999999998776554332 3     3221   123332  222223333  234


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++++++|.
T Consensus       217 g~Dvv~d~~g~  227 (346)
T 3fbg_A          217 LVDYVFCTFNT  227 (346)
T ss_dssp             CEEEEEESSCH
T ss_pred             CccEEEECCCc
Confidence            69999999884

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.09  E-value=2e-05  Score=49.87  Aligned_cols=73  Identities=10%  Similarity=0.075  Sum_probs=55.4

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      +.++|.|+ |.+|..+++.|.+.|++|++++++++..+.+..    .  +  +..+..|.++++.++++      ...+.
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~--g--~~~i~gd~~~~~~l~~a------~i~~a   72 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R--G--VRAVLGNAANEEIMQLA------HLECA   72 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T--T--CEEEESCTTSHHHHHHT------TGGGC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c--C--CCEEECCCCCHHHHHhc------CcccC
Confidence            45777887 789999999999999999999999877665432    1  2  45678899988766543      12357


Q ss_pred             cEEEECcc
Q 042455          105 NILINKAG  112 (138)
Q Consensus       105 d~lv~~ag  112 (138)
                      |.+|.+.+
T Consensus        73 d~vi~~~~   80 (140)
T 3fwz_A           73 KWLILTIP   80 (140)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEECC
Confidence            88888776

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=98.07  E-value=2.3e-05  Score=57.27  Aligned_cols=75  Identities=15%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+...+++     +...   ..|..+.+.+.+       ..+
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l-----Ga~~---v~~~~~~~~~~~-------~~~  250 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF-----GADS---FLVSRDQEQMQA-------AAG  250 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS-----CCSE---EEETTCHHHHHH-------TTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----CCce---EEeccCHHHHHH-------hhC
Confidence            6899999996 99999999988889999999999887765543222     3321   246666543322       225


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++|+++|.
T Consensus       251 ~~D~vid~~g~  261 (366)
T 1yqd_A          251 TLDGIIDTVSA  261 (366)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCCEEEECCCc
Confidence            79999999985

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=98.07  E-value=2.1e-05  Score=56.91  Aligned_cols=77  Identities=19%  Similarity=0.334  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .++++||+||+|++|...++.+...|++|+++ +++++.+.+ .++     +...    .| .+.+ +...+.+.. ...
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~l-----Ga~~----i~-~~~~-~~~~~~~~~-~~~  215 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RDL-----GATP----ID-ASRE-PEDYAAEHT-AGQ  215 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HHH-----TSEE----EE-TTSC-HHHHHHHHH-TTS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HHc-----CCCE----ec-cCCC-HHHHHHHHh-cCC
Confidence            58899999999999999999998999999988 666654432 333     4432    34 3222 223333322 223


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++|.++|.
T Consensus       216 g~D~vid~~g~  226 (343)
T 3gaz_A          216 GFDLVYDTLGG  226 (343)
T ss_dssp             CEEEEEESSCT
T ss_pred             CceEEEECCCc
Confidence            69999999984

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=98.07  E-value=4.1e-05  Score=53.35  Aligned_cols=82  Identities=15%  Similarity=0.304  Sum_probs=61.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.+++.+.                   .+++.+.+.+....|..++..+.
T Consensus        26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  104 (251)
T 1zud_1           26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ  104 (251)
T ss_dssp             HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            56789999998 6899999999999997 788886642                   56777888888877777777776


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      .+++ .+.+..++.       ..|++|.+..
T Consensus       105 ~~~~-~~~~~~~~~-------~~DvVi~~~d  127 (251)
T 1zud_1          105 QRLT-GEALKDAVA-------RADVVLDCTD  127 (251)
T ss_dssp             SCCC-HHHHHHHHH-------HCSEEEECCS
T ss_pred             ccCC-HHHHHHHHh-------cCCEEEECCC
Confidence            6664 344444443       2577777654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.01  E-value=1.8e-05  Score=52.13  Aligned_cols=78  Identities=12%  Similarity=0.141  Sum_probs=55.5

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++.++.++|.|+ |.+|..+++.|.+. |++|+++++++++.+.+.    ..  +  +..+..|.++.+.+.++     .
T Consensus        36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~~--g--~~~~~gd~~~~~~l~~~-----~  101 (183)
T 3c85_A           36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHR----SE--G--RNVISGDATDPDFWERI-----L  101 (183)
T ss_dssp             CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----HT--T--CCEEECCTTCHHHHHTB-----C
T ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH----HC--C--CCEEEcCCCCHHHHHhc-----c
Confidence            456777888985 89999999999999 999999999987765432    21  2  34556788776654322     0


Q ss_pred             cCCCccEEEECcc
Q 042455          100 RALPLNILINKAG  112 (138)
Q Consensus       100 ~~~~id~lv~~ag  112 (138)
                      ...+.|.+|.+.+
T Consensus       102 ~~~~ad~vi~~~~  114 (183)
T 3c85_A          102 DTGHVKLVLLAMP  114 (183)
T ss_dssp             SCCCCCEEEECCS
T ss_pred             CCCCCCEEEEeCC
Confidence            2346788888766

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.99  E-value=3.3e-05  Score=56.53  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|++++|+||+|++|...++.+...|++|++++ ++++.+. ..++     +...   ..|..+.+..    +++.+ .+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~-~~~l-----Ga~~---v~~~~~~~~~----~~~~~-~~  247 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASEL-VRKL-----GADD---VIDYKSGSVE----EQLKS-LK  247 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHH-HHHT-----TCSE---EEETTSSCHH----HHHHT-SC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHH-HHHc-----CCCE---EEECCchHHH----HHHhh-cC
Confidence            578999999999999999998888999998888 4444333 2222     3322   2354443222    22332 35


Q ss_pred             CccEEEECcccC
Q 042455          103 PLNILINKAGIC  114 (138)
Q Consensus       103 ~id~lv~~ag~~  114 (138)
                      ++|++|+++|..
T Consensus       248 g~D~vid~~g~~  259 (375)
T 2vn8_A          248 PFDFILDNVGGS  259 (375)
T ss_dssp             CBSEEEESSCTT
T ss_pred             CCCEEEECCCCh
Confidence            799999999853

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.95  E-value=8.7e-05  Score=53.87  Aligned_cols=62  Identities=16%  Similarity=0.269  Sum_probs=51.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.+++++.                   .+++.+.+.+...+|..++..+.
T Consensus        32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~  110 (340)
T 3rui_A           32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK  110 (340)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEe
Confidence            46889999998 6999999999999997 899987743                   56777888888888888888877


Q ss_pred             ecC
Q 042455           82 LDL   84 (138)
Q Consensus        82 ~D~   84 (138)
                      .++
T Consensus       111 ~~i  113 (340)
T 3rui_A          111 LSI  113 (340)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            665

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.90  E-value=0.00013  Score=52.99  Aligned_cols=83  Identities=17%  Similarity=0.187  Sum_probs=58.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|+++||+|+ |++|...++.....|++ |+++++++++.+.+. ++     ...+..+..|-.+.+++.+.+.+.. .-
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-----~~~~~~~~~~~~~~~~~~~~v~~~t-~g  250 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-----CPEVVTHKVERLSAEESAKKIVESF-GG  250 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-----CTTCEEEECCSCCHHHHHHHHHHHT-SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-----chhcccccccccchHHHHHHHHHHh-CC
Confidence            5889999998 99999999888888997 899998887765433 33     2234445555555555544444432 12


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|+++.++|.
T Consensus       251 ~g~Dvvid~~g~  262 (363)
T 3m6i_A          251 IEPAVALECTGV  262 (363)
T ss_dssp             CCCSEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            369999999984

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.90  E-value=3.7e-05  Score=55.22  Aligned_cols=94  Identities=16%  Similarity=0.152  Sum_probs=59.5

Q ss_pred             CCCCCE-EEEeCC-C-----------------CchHHHHHHHHHHCCCEEEEEecCcchhH------H--HHHHHHhcC-
Q 042455           21 DAAGVT-AIVTGA-S-----------------SGIGAETTRVLALRGVHVIMADRNMAAGR------D--VKVAIVMQN-   72 (138)
Q Consensus        21 ~~~~k~-~litG~-~-----------------~~iG~~~a~~l~~~g~~v~~~~r~~~~~~------~--~~~~l~~~~-   72 (138)
                      ++.||. +|||+| |                 |-.|.++|+.++..|+.|+++++......      .  ....+.... 
T Consensus        33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~  112 (313)
T 1p9o_A           33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGP  112 (313)
T ss_dssp             HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC
T ss_pred             hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhccccc
Confidence            357777 999955 5                 45999999999999999999988533110      0  011110000 


Q ss_pred             CCCeeEEEEecCCCHHHHHHHHHHH------------------------------HhcCCCccEEEECcccC
Q 042455           73 PAAKVDVMELDLSSLASVRKFASDF------------------------------TARALPLNILINKAGIC  114 (138)
Q Consensus        73 ~~~~~~~~~~D~~~~~~~~~~~~~~------------------------------~~~~~~id~lv~~ag~~  114 (138)
                      ....+..+..|+....++.+++...                              .+.+++.|++|.+|++.
T Consensus       113 ~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVs  184 (313)
T 1p9o_A          113 ALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVS  184 (313)
T ss_dssp             -CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCC
T ss_pred             cccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchh
Confidence            0112345566666666665555443                              24567899999999986

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.88  E-value=3.5e-05  Score=54.32  Aligned_cols=76  Identities=13%  Similarity=0.249  Sum_probs=56.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++.+|+++|+|+ ||+|++++..|++.|+ +|.++.|+.++++++.+++..    ..+...  +..+   +.       
T Consensus       116 ~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~--~~~~---l~-------  178 (272)
T 3pwz_A          116 EPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRIS--RYEA---LE-------  178 (272)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEE--CSGG---GT-------
T ss_pred             CCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEe--eHHH---hc-------
Confidence            4578999999998 6999999999999996 999999999988888777632    123332  2211   11       


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                      .  ...|++||+....
T Consensus       179 ~--~~~DivInaTp~g  192 (272)
T 3pwz_A          179 G--QSFDIVVNATSAS  192 (272)
T ss_dssp             T--CCCSEEEECSSGG
T ss_pred             c--cCCCEEEECCCCC
Confidence            1  3689999998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.88  E-value=7.1e-05  Score=50.69  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=54.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++|+|+ |.+|..+++.|.+.|++|++++++++..+.+....       .+.++..|.++.+.++++      ...+.|
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a------~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDA------EVSKND   67 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHH------TCCTTC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhc------CcccCC
Confidence            4788996 89999999999999999999999988766543321       245678888887766543      234568


Q ss_pred             EEEECcc
Q 042455          106 ILINKAG  112 (138)
Q Consensus       106 ~lv~~ag  112 (138)
                      ++|.+.+
T Consensus        68 ~vi~~~~   74 (218)
T 3l4b_C           68 VVVILTP   74 (218)
T ss_dssp             EEEECCS
T ss_pred             EEEEecC
Confidence            8887765

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.86  E-value=6.3e-06  Score=52.43  Aligned_cols=71  Identities=13%  Similarity=0.196  Sum_probs=51.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++++|+|+ |++|..+++.|...|++|.+++|++++.++...++     +..+    .+..+.+   .++.       .
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~-----~~~~----~~~~~~~---~~~~-------~   80 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY-----EYEY----VLINDID---SLIK-------N   80 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH-----TCEE----EECSCHH---HHHH-------T
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh-----CCce----EeecCHH---HHhc-------C
Confidence            889999997 89999999999999999999999988877766554     2221    1233322   2222       4


Q ss_pred             ccEEEECcccC
Q 042455          104 LNILINKAGIC  114 (138)
Q Consensus       104 id~lv~~ag~~  114 (138)
                      .|++|++.+..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            69999988854

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.82  E-value=8.9e-05  Score=52.20  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|+++|+|+ ||.|++++..|++.|.+|.++.|+.++++++. ++     +.  ...  +..+.              ..
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~-----~~--~~~--~~~~l--------------~~  172 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL-----GC--DCF--MEPPK--------------SA  172 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH-----TC--EEE--SSCCS--------------SC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC-----CC--eEe--cHHHh--------------cc
Confidence            899999997 89999999999999999999999999988877 54     22  121  22221              15


Q ss_pred             ccEEEECcccC
Q 042455          104 LNILINKAGIC  114 (138)
Q Consensus       104 id~lv~~ag~~  114 (138)
                      .|++||+....
T Consensus       173 ~DiVInaTp~G  183 (269)
T 3phh_A          173 FDLIINATSAS  183 (269)
T ss_dssp             CSEEEECCTTC
T ss_pred             CCEEEEcccCC
Confidence            79999998765

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.82  E-value=3.7e-05  Score=55.20  Aligned_cols=75  Identities=21%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++|+|++|++|...++.+...|++|+++++++++.+.+. ++     +...   ..|..+.+  ...+.++.  .+++|
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~l-----Ga~~---~i~~~~~~--~~~~~~~~--~~~~d  218 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VL-----GAKE---VLAREDVM--AERIRPLD--KQRWA  218 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HT-----TCSE---EEECC-----------CC--SCCEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-Hc-----CCcE---EEecCCcH--HHHHHHhc--CCccc
Confidence            7999999999999999988889999999999877765542 22     3322   13444332  22222221  24699


Q ss_pred             EEEECccc
Q 042455          106 ILINKAGI  113 (138)
Q Consensus       106 ~lv~~ag~  113 (138)
                      ++|+++|.
T Consensus       219 ~vid~~g~  226 (328)
T 1xa0_A          219 AAVDPVGG  226 (328)
T ss_dssp             EEEECSTT
T ss_pred             EEEECCcH
Confidence            99999984

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.82  E-value=9.4e-05  Score=53.80  Aligned_cols=38  Identities=21%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             CC-CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch
Q 042455           23 AG-VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA   60 (138)
Q Consensus        23 ~~-k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~   60 (138)
                      .| .+++|+|++|++|...++.+...|++++++.++.++
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~  204 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN  204 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            57 899999999999999988777789999888877665

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.81  E-value=0.00011  Score=53.50  Aligned_cols=78  Identities=17%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|++++|+| +|++|...++.+...|++|+++++++++.+.+ .++     +....   .| .+.+++...+.+... ..
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~l-----Ga~~v---i~-~~~~~~~~~v~~~~~-g~  256 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FAL-----GADHG---IN-RLEEDWVERVYALTG-DR  256 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH-----TCSEE---EE-TTTSCHHHHHHHHHT-TC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHc-----CCCEE---Ec-CCcccHHHHHHHHhC-CC
Confidence            578999999 79999999998888999999999988776553 333     33222   24 332333333333222 23


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      ++|+++.++|
T Consensus       257 g~D~vid~~g  266 (363)
T 3uog_A          257 GADHILEIAG  266 (363)
T ss_dssp             CEEEEEEETT
T ss_pred             CceEEEECCC
Confidence            6999999998

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.81  E-value=0.00023  Score=51.32  Aligned_cols=78  Identities=18%  Similarity=0.227  Sum_probs=51.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++||||+|.+|..++..|+.+|  ..|.+++++++  +....++........+..    +++..+....++       
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t~d~~~al~-------   75 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQQQLEAALT-------   75 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESHHHHHHHHT-------
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCCCCHHHHcC-------
Confidence            369999999999999999999988  68999998775  333344443211112222    223344443333       


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      ..|++|+++|...
T Consensus        76 gaDvVi~~ag~~~   88 (326)
T 1smk_A           76 GMDLIIVPAGVPR   88 (326)
T ss_dssp             TCSEEEECCCCCC
T ss_pred             CCCEEEEcCCcCC
Confidence            5799999999754

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.80  E-value=9e-06  Score=58.79  Aligned_cols=79  Identities=13%  Similarity=-0.031  Sum_probs=53.0

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-------EEEEEecC----cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-------HVIMADRN----MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-------~v~~~~r~----~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      .+++||||+|.+|..++..|+..|.       .|++++++    +++++....++....  ..+.   .|+....+....
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~--~~~~---~~i~~~~~~~~a   80 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA--FPLL---AGMTAHADPMTA   80 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT--CTTE---EEEEEESSHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc--cccc---CcEEEecCcHHH
Confidence            4799999999999999999998885       79999988    555555555565421  1111   233322222222


Q ss_pred             HHHHHhcCCCccEEEECcccCC
Q 042455           94 ASDFTARALPLNILINKAGICG  115 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~~  115 (138)
                             +...|++|+.||..+
T Consensus        81 -------l~~aD~Vi~~ag~~~   95 (329)
T 1b8p_A           81 -------FKDADVALLVGARPR   95 (329)
T ss_dssp             -------TTTCSEEEECCCCCC
T ss_pred             -------hCCCCEEEEeCCCCC
Confidence                   235799999999764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.77  E-value=4.9e-05  Score=56.39  Aligned_cols=74  Identities=16%  Similarity=0.309  Sum_probs=53.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++.+++++|.|+ |++|..+++.+...|+ +|++++|+.+++++...++     +..  .  .+..   ++..++     
T Consensus       164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~-----g~~--~--~~~~---~l~~~l-----  225 (404)
T 1gpj_A          164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-----GGE--A--VRFD---ELVDHL-----  225 (404)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-----TCE--E--CCGG---GHHHHH-----
T ss_pred             cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-----CCc--e--ecHH---hHHHHh-----
Confidence            468999999998 8999999999999998 8999999987776655544     322  1  1222   222222     


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                        ...|++|+++|..
T Consensus       226 --~~aDvVi~at~~~  238 (404)
T 1gpj_A          226 --ARSDVVVSATAAP  238 (404)
T ss_dssp             --HTCSEEEECCSSS
T ss_pred             --cCCCEEEEccCCC
Confidence              2479999988753

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=97.77  E-value=0.00016  Score=56.17  Aligned_cols=62  Identities=16%  Similarity=0.269  Sum_probs=52.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.+++.+.                   .+++.+.+.+....|..++..+.
T Consensus       324 L~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~  402 (615)
T 4gsl_A          324 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK  402 (615)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEee
Confidence            46789999998 6999999999999997 899998753                   56777888888888888888887


Q ss_pred             ecC
Q 042455           82 LDL   84 (138)
Q Consensus        82 ~D~   84 (138)
                      .++
T Consensus       403 ~~I  405 (615)
T 4gsl_A          403 LSI  405 (615)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            665

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=97.77  E-value=0.00014  Score=56.37  Aligned_cols=62  Identities=16%  Similarity=0.265  Sum_probs=51.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.+++.+                   ..+++.+.+.++...|..++..+.
T Consensus       325 L~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~  403 (598)
T 3vh1_A          325 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK  403 (598)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEe
Confidence            56789999998 6999999999999998 89999654                   257788888888888888888887


Q ss_pred             ecC
Q 042455           82 LDL   84 (138)
Q Consensus        82 ~D~   84 (138)
                      .++
T Consensus       404 ~~I  406 (598)
T 3vh1_A          404 LSI  406 (598)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            665

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.76  E-value=9.1e-05  Score=53.62  Aligned_cols=79  Identities=20%  Similarity=0.247  Sum_probs=53.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +...   ..|..+.+ +.+.+.+.. ..
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~-----Ga~~---~~~~~~~~-~~~~v~~~~-~g  234 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KV-----GADY---VINPFEED-VVKEVMDIT-DG  234 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HH-----TCSE---EECTTTSC-HHHHHHHHT-TT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-----CCCE---EECCCCcC-HHHHHHHHc-CC
Confidence            6889999999 9999999998888999 8999999877655432 33     3221   23544322 222222221 11


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|+++|.
T Consensus       235 ~g~D~vid~~g~  246 (348)
T 2d8a_A          235 NGVDVFLEFSGA  246 (348)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            269999999984

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.72  E-value=0.00026  Score=51.75  Aligned_cols=74  Identities=18%  Similarity=0.276  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|.+++|+|+ |++|...++.+...|++|+++++++++.+.+. ++     +...   ..|..+.+.+    +++.   +
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~l-----Ga~~---vi~~~~~~~~----~~~~---~  256 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-AL-----GADE---VVNSRNADEM----AAHL---K  256 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH-----TCSE---EEETTCHHHH----HTTT---T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc-----CCcE---EeccccHHHH----HHhh---c
Confidence            5789999997 89999999888788999999999888766543 23     3321   2355554432    2222   5


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|.++|.
T Consensus       257 g~Dvvid~~g~  267 (369)
T 1uuf_A          257 SFDFILNTVAA  267 (369)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.72  E-value=0.00053  Score=49.65  Aligned_cols=81  Identities=21%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHh-c
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTA-R  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~-~  100 (138)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+.+. ++     +...   ..|..+ .+..+++.+.... .
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NC-----GADV---TLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT-----TCSE---EEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-Hh-----CCCE---EEcCcccccHHHHHHHHhcccc
Confidence            5889999997 89999999988888999999998877655432 22     3321   234443 2222333222210 1


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      ..++|++|+++|.
T Consensus       238 g~g~D~vid~~g~  250 (352)
T 1e3j_A          238 GDLPNVTIDCSGN  250 (352)
T ss_dssp             SSCCSEEEECSCC
T ss_pred             CCCCCEEEECCCC
Confidence            2369999999984

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.72  E-value=0.0004  Score=50.89  Aligned_cols=80  Identities=21%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC--CHHHHHHHHHHHHh
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS--SLASVRKFASDFTA   99 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~   99 (138)
                      .|++++|+| +|++|...++.+...| ++|+++++++++.+.+. ++     +... .  .|..  +.+++.+.+.+...
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~~-v--i~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI-----GADL-T--LNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT-----TCSE-E--EETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-Hc-----CCcE-E--EeccccCcchHHHHHHHHhC
Confidence            478999999 8999999999888889 59999999887655432 22     3321 1  2433  13343333333221


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                       ...+|++|.++|.
T Consensus       265 -g~g~Dvvid~~g~  277 (380)
T 1vj0_A          265 -GRGADFILEATGD  277 (380)
T ss_dssp             -TSCEEEEEECSSC
T ss_pred             -CCCCcEEEECCCC
Confidence             1269999999984

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.72  E-value=0.0005  Score=49.87  Aligned_cols=79  Identities=24%  Similarity=0.273  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC--CHHHHHHHHHHHHh
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS--SLASVRKFASDFTA   99 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~   99 (138)
                      .|.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +...   ..|..  +.++....+.+...
T Consensus       171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-----Ga~~---vi~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI-----GADL---VLQISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT-----TCSE---EEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-----CCCE---EEcCcccccchHHHHHHHHhC
Confidence            5889999996 8999999988778899 8999999877655432 22     3321   23444  22333222222222


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                        ..+|++|.++|.
T Consensus       241 --~g~D~vid~~g~  252 (356)
T 1pl8_A          241 --CKPEVTIECTGA  252 (356)
T ss_dssp             --SCCSEEEECSCC
T ss_pred             --CCCCEEEECCCC
Confidence              479999999984

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.69  E-value=0.0001  Score=53.66  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+.+. ++     +....   .|..+..   .+.+++.   +
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v---~~~~~~~---~~~~~~~---~  242 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KM-----GADHY---IATLEEG---DWGEKYF---D  242 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH-----TCSEE---EEGGGTS---CHHHHSC---S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-Hc-----CCCEE---EcCcCch---HHHHHhh---c
Confidence            5889999999 99999999888788999999999888766543 23     33221   2333220   1122222   5


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|.++|.
T Consensus       243 ~~D~vid~~g~  253 (360)
T 1piw_A          243 TFDLIVVCASS  253 (360)
T ss_dssp             CEEEEEECCSC
T ss_pred             CCCEEEECCCC
Confidence            79999999986

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=97.68  E-value=0.00025  Score=51.58  Aligned_cols=78  Identities=18%  Similarity=0.217  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+.+++|+|+ |++|...++.+... |++|+++++++++.+.+. ++     +...   ..|..+.  +.+.+.++.. .
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---vi~~~~~--~~~~v~~~~~-g  252 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL-----GADH---VVDARRD--PVKQVMELTR-G  252 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT-----TCSE---EEETTSC--HHHHHHHHTT-T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-Hh-----CCCE---EEeccch--HHHHHHHHhC-C
Confidence            5789999999 89999999887778 999999999877655432 22     3321   2355443  3333333321 1


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.++|.
T Consensus       253 ~g~Dvvid~~G~  264 (359)
T 1h2b_A          253 RGVNVAMDFVGS  264 (359)
T ss_dssp             CCEEEEEESSCC
T ss_pred             CCCcEEEECCCC
Confidence            269999999984

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.68  E-value=0.00013  Score=52.66  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+|+ |++|...++.+...|++|+++++++++.+.+. ++     +...   ..|..+.+..+.+.+    ..+
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---~i~~~~~~~~~~~~~----~~g  231 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RL-----GAEV---AVNARDTDPAAWLQK----EIG  231 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT-----TCSE---EEETTTSCHHHHHHH----HHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-Hc-----CCCE---EEeCCCcCHHHHHHH----hCC
Confidence            6889999997 89999999888889999999999887765432 22     3322   234444333333333    225


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|++|.++|.
T Consensus       232 ~~d~vid~~g~  242 (340)
T 3s2e_A          232 GAHGVLVTAVS  242 (340)
T ss_dssp             SEEEEEESSCC
T ss_pred             CCCEEEEeCCC
Confidence            79999999873

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.68  E-value=0.00025  Score=51.73  Aligned_cols=64  Identities=20%  Similarity=0.443  Sum_probs=51.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.+++++.                   .+++.+.+.+....|..++..+.
T Consensus       116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  194 (353)
T 3h5n_A          116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA  194 (353)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence            56789999998 7999999999999997 899998752                   46677788888888877777776


Q ss_pred             ecCCC
Q 042455           82 LDLSS   86 (138)
Q Consensus        82 ~D~~~   86 (138)
                      .++++
T Consensus       195 ~~i~~  199 (353)
T 3h5n_A          195 LNIND  199 (353)
T ss_dssp             CCCCS
T ss_pred             cccCc
Confidence            65543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.64  E-value=5.2e-05  Score=54.80  Aligned_cols=77  Identities=18%  Similarity=0.243  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+.. +     ...    ..|..+. ++.+.+.+..  .
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l-----a~~----v~~~~~~-~~~~~~~~~~--~  229 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y-----ADR----LVNPLEE-DLLEVVRRVT--G  229 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T-----CSE----EECTTTS-CHHHHHHHHH--S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h-----HHh----ccCcCcc-CHHHHHHHhc--C
Confidence            6889999999 9999999998888899 89999998765432211 1     111    2354432 2333333332  2


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      .++|++|.++|.
T Consensus       230 ~g~D~vid~~g~  241 (343)
T 2dq4_A          230 SGVEVLLEFSGN  241 (343)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            469999999984

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.63  E-value=0.00018  Score=52.27  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|.+++|+|+ |++|...++.+...|++|+++++++++.+.+.+++     +...   ..|..+.+.+.       +..+
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l-----Ga~~---vi~~~~~~~~~-------~~~~  243 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL-----GADD---YVIGSDQAKMS-------ELAD  243 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS-----CCSC---EEETTCHHHHH-------HSTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc-----CCce---eeccccHHHHH-------HhcC
Confidence            6889999995 89999999887778999999999887755433222     3221   13444543222       2224


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|++|.++|.
T Consensus       244 g~D~vid~~g~  254 (357)
T 2cf5_A          244 SLDYVIDTVPV  254 (357)
T ss_dssp             TEEEEEECCCS
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.62  E-value=0.00026  Score=51.74  Aligned_cols=79  Identities=18%  Similarity=0.175  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~  100 (138)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +...   ..|..+ .+++...+.+... 
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~~---vi~~~~~~~~~~~~~~~~~~-  260 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF-----GATD---FVNPNDHSEPISQVLSKMTN-  260 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TCCE---EECGGGCSSCHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh-----CCce---EEeccccchhHHHHHHHHhC-
Confidence            5789999995 8999999998888899 8999999888766432 22     3321   134432 1223333444332 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                       +.+|++|+++|.
T Consensus       261 -~g~D~vid~~g~  272 (374)
T 1cdo_A          261 -GGVDFSLECVGN  272 (374)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999984

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=97.61  E-value=0.00046  Score=50.40  Aligned_cols=79  Identities=16%  Similarity=0.105  Sum_probs=51.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..+++++|+|+++++|...++.+...|++|+.+. ++++.+ ...++     +...   ..|..+.+-.+ .+.+..  -
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~-~~~~l-----Ga~~---vi~~~~~~~~~-~v~~~t--~  229 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD-LAKSR-----GAEE---VFDYRAPNLAQ-TIRTYT--K  229 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH-HHHHT-----TCSE---EEETTSTTHHH-HHHHHT--T
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH-HHHHc-----CCcE---EEECCCchHHH-HHHHHc--c
Confidence            4688999999999999999998888999988876 555544 22222     3321   23444433222 222221  2


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +++|+++.++|.
T Consensus       230 g~~d~v~d~~g~  241 (371)
T 3gqv_A          230 NNLRYALDCITN  241 (371)
T ss_dssp             TCCCEEEESSCS
T ss_pred             CCccEEEECCCc
Confidence            458999999884

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.61  E-value=0.00022  Score=52.05  Aligned_cols=77  Identities=17%  Similarity=0.243  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHH-CCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh-c
Q 042455           23 AGVTAIVTGASSGIGAETTRVLAL-RGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA-R  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~-~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~  100 (138)
                      .+++++|+||+|++|...++.+.. .|++|+++++++++.+.+. ++     +....   .|..+  ++   .+++.+ .
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~-~l-----Gad~v---i~~~~--~~---~~~v~~~~  236 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SL-----GAHHV---IDHSK--PL---AAEVAALG  236 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-HT-----TCSEE---ECTTS--CH---HHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH-Hc-----CCCEE---EeCCC--CH---HHHHHHhc
Confidence            578999999999999998876655 5889999999877655432 22     33221   23332  22   222322 2


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      .+.+|+++.++|.
T Consensus       237 ~~g~Dvvid~~g~  249 (363)
T 4dvj_A          237 LGAPAFVFSTTHT  249 (363)
T ss_dssp             SCCEEEEEECSCH
T ss_pred             CCCceEEEECCCc
Confidence            2468999998874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.57  E-value=0.00023  Score=52.02  Aligned_cols=80  Identities=25%  Similarity=0.301  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH-hc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT-AR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~  100 (138)
                      .|++++|+|+ |++|...++.+...|+ +|+++++++++.+. ..++     +...   ..|..+.+..+. +.+.. ..
T Consensus       182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~-a~~l-----Ga~~---vi~~~~~~~~~~-i~~~~~~~  250 (370)
T 4ej6_A          182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRL-AEEV-----GATA---TVDPSAGDVVEA-IAGPVGLV  250 (370)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHH-HHHH-----TCSE---EECTTSSCHHHH-HHSTTSSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHc-----CCCE---EECCCCcCHHHH-HHhhhhcc
Confidence            5889999998 8999999988888899 89999888776543 3333     3321   234443322222 22100 11


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      .+++|++|.++|.
T Consensus       251 ~gg~Dvvid~~G~  263 (370)
T 4ej6_A          251 PGGVDVVIECAGV  263 (370)
T ss_dssp             TTCEEEEEECSCC
T ss_pred             CCCCCEEEECCCC
Confidence            2478999999883

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.56  E-value=0.00092  Score=48.23  Aligned_cols=77  Identities=18%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHC--CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALR--GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++++|+|+ |++|...++.+...  |++|+++++++++.+.+. ++     +....   .|..+.   ...++++.. 
T Consensus       170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v---i~~~~~---~~~~~~~~~-  235 (344)
T 2h6e_A          170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-EL-----GADYV---SEMKDA---ESLINKLTD-  235 (344)
T ss_dssp             SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HH-----TCSEE---ECHHHH---HHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-Hh-----CCCEE---eccccc---hHHHHHhhc-
Confidence            6899999999 89999999888888  999999998877755432 23     32211   232220   123334332 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      ..++|++|.++|.
T Consensus       236 g~g~D~vid~~g~  248 (344)
T 2h6e_A          236 GLGASIAIDLVGT  248 (344)
T ss_dssp             TCCEEEEEESSCC
T ss_pred             CCCccEEEECCCC
Confidence            2369999999984

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.54  E-value=0.00016  Score=52.36  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=49.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|.+++|+|+ |++|...++.+...|++|+++++++++.+.+. ++     +....+     ++.+.+.+          
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v~-----~~~~~~~~----------  233 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SM-----GVKHFY-----TDPKQCKE----------  233 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-HT-----TCSEEE-----SSGGGCCS----------
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hc-----CCCeec-----CCHHHHhc----------
Confidence            5889999997 89999999888888999999999988766432 22     333222     23222211          


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|+++.++|.
T Consensus       234 ~~D~vid~~g~  244 (348)
T 3two_A          234 ELDFIISTIPT  244 (348)
T ss_dssp             CEEEEEECCCS
T ss_pred             CCCEEEECCCc
Confidence            68999998885

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.53  E-value=0.00037  Score=50.82  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~  100 (138)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +...   ..|..+ .+++...+.+... 
T Consensus       190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~~---vi~~~~~~~~~~~~v~~~~~-  258 (373)
T 2fzw_A          190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF-----GATE---CINPQDFSKPIQEVLIEMTD-  258 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH-----TCSE---EECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc-----CCce---EeccccccccHHHHHHHHhC-
Confidence            5789999996 8999999988777898 8999999888766543 33     3321   124332 1223333333322 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                       +.+|++|.++|.
T Consensus       259 -~g~D~vid~~g~  270 (373)
T 2fzw_A          259 -GGVDYSFECIGN  270 (373)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCc
Confidence             479999999984

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.53  E-value=0.00016  Score=52.97  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~  100 (138)
                      .+.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+ .++     +...   ..|..+ .+++.+.+.+... 
T Consensus       193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~~---vi~~~~~~~~~~~~i~~~~~-  261 (378)
T 3uko_A          193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKF-----GVNE---FVNPKDHDKPIQEVIVDLTD-  261 (378)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTT-----TCCE---EECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCcE---EEccccCchhHHHHHHHhcC-
Confidence            5789999998 8999999988888899 899999988876632 222     3322   223321 1233333333322 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                       +.+|++|.++|.
T Consensus       262 -gg~D~vid~~g~  273 (378)
T 3uko_A          262 -GGVDYSFECIGN  273 (378)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             379999999885

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.52  E-value=0.0026  Score=44.73  Aligned_cols=43  Identities=23%  Similarity=0.176  Sum_probs=36.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~   67 (138)
                      -+++.|.|+ |.+|.++|+.|++.|++|++.+++++.++.....
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence            467888876 7899999999999999999999998876665443

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.52  E-value=0.00024  Score=50.88  Aligned_cols=75  Identities=16%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -.|.+++|+||+|++|...++.+...|++|+++++.+ + .+...++     +...   ..|..+.+.+       .+..
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~-~~~~~~l-----Ga~~---~i~~~~~~~~-------~~~~  213 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-N-HAFLKAL-----GAEQ---CINYHEEDFL-------LAIS  213 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-H-HHHHHHH-----TCSE---EEETTTSCHH-------HHCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-h-HHHHHHc-----CCCE---EEeCCCcchh-------hhhc
Confidence            3688999999999999999998888999998887533 3 2333333     3322   2344433211       1122


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|+++.++|.
T Consensus       214 ~g~D~v~d~~g~  225 (321)
T 3tqh_A          214 TPVDAVIDLVGG  225 (321)
T ss_dssp             SCEEEEEESSCH
T ss_pred             cCCCEEEECCCc
Confidence            478999998884

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.51  E-value=0.00038  Score=50.80  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~  100 (138)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +...   ..|..+ .+++.+.+.++.. 
T Consensus       191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~~---vi~~~~~~~~~~~~~~~~~~-  259 (374)
T 2jhf_A          191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EV-----GATE---CVNPQDYKKPIQEVLTEMSN-  259 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TCSE---EECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh-----CCce---EecccccchhHHHHHHHHhC-
Confidence            5789999995 8999999998888899 8999999888765432 22     3321   134332 1223333433322 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                       +.+|++|.++|.
T Consensus       260 -~g~D~vid~~g~  271 (374)
T 2jhf_A          260 -GGVDFSFEVIGR  271 (374)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCcEEEECCCC
Confidence             479999999984

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.50  E-value=0.00049  Score=50.28  Aligned_cols=79  Identities=23%  Similarity=0.225  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~  100 (138)
                      .+.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +...   ..|..+ .+++...+.+... 
T Consensus       195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-----Ga~~---vi~~~~~~~~~~~~v~~~~~-  263 (376)
T 1e3i_A          195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-AL-----GATD---CLNPRELDKPVQDVITELTA-  263 (376)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TCSE---EECGGGCSSCHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh-----CCcE---EEccccccchHHHHHHHHhC-
Confidence            5789999996 8999999988888899 8999999888765432 22     3321   124332 1223333333322 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                       +.+|++|.++|.
T Consensus       264 -~g~Dvvid~~G~  275 (376)
T 1e3i_A          264 -GGVDYSLDCAGT  275 (376)
T ss_dssp             -SCBSEEEESSCC
T ss_pred             -CCccEEEECCCC
Confidence             479999999984

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.48  E-value=0.00068  Score=50.07  Aligned_cols=80  Identities=19%  Similarity=0.331  Sum_probs=52.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      -.|.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+ .++     +...   ..|..+.+..+.+ .+.. .
T Consensus       212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~l-----Ga~~---vi~~~~~~~~~~i-~~~t-~  279 (404)
T 3ip1_A          212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KEL-----GADH---VIDPTKENFVEAV-LDYT-N  279 (404)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH-----TCSE---EECTTTSCHHHHH-HHHT-T
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc-----CCCE---EEcCCCCCHHHHH-HHHh-C
Confidence            35789999998 8999999988888899 899999887765543 333     3322   2244333222222 2221 1


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      ..++|++|.++|.
T Consensus       280 g~g~D~vid~~g~  292 (404)
T 3ip1_A          280 GLGAKLFLEATGV  292 (404)
T ss_dssp             TCCCSEEEECSSC
T ss_pred             CCCCCEEEECCCC
Confidence            1259999999884

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=97.45  E-value=0.00034  Score=50.77  Aligned_cols=37  Identities=24%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .|.++||+|++|++|...++.....|++++++.+..+
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~  203 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRP  203 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCS
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            5889999999999999998877778998877766544

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.44  E-value=0.0018  Score=46.76  Aligned_cols=78  Identities=14%  Similarity=0.077  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCC--CeeEEEEecCCCHHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPA--AKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ..+++.|+|+ |.+|.+++..|+..|.  +|+++++++++++....+|....+-  ..+.....|   .           
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~-----------   68 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y-----------   68 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G-----------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H-----------
Confidence            3467889996 9999999999999886  8999999988887766667644221  223333222   1           


Q ss_pred             hcCCCccEEEECcccCC
Q 042455           99 ARALPLNILINKAGICG  115 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~  115 (138)
                      +.+..-|++|..+|...
T Consensus        69 ~a~~~aDvVvi~ag~p~   85 (326)
T 3pqe_A           69 EDCKDADIVCICAGANQ   85 (326)
T ss_dssp             GGGTTCSEEEECCSCCC
T ss_pred             HHhCCCCEEEEecccCC
Confidence            12345799999999754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.44  E-value=0.0011  Score=49.19  Aligned_cols=43  Identities=19%  Similarity=0.138  Sum_probs=37.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+.+++++|+|+ |.+|+.+++.+...|++|++++++.++.+..
T Consensus       169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            357899999997 8999999999999999999999998876653

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.42  E-value=0.00046  Score=50.60  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             CCCEEEEeC-CCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTG-ASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG-~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+.+++|.| |++++|...++.+...|++|+++++++++.+.+. ++     +...   ..|..+.+-.+.+.+....  
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---~~~~~~~~~~~~v~~~t~~--  238 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLK-AQ-----GAVH---VCNAASPTFMQDLTEALVS--  238 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHH-HT-----TCSC---EEETTSTTHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hC-----CCcE---EEeCCChHHHHHHHHHhcC--
Confidence            578899987 8999999999888888999999999877755433 22     3322   1344443333333222211  


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.++|.
T Consensus       239 ~g~d~v~d~~g~  250 (379)
T 3iup_A          239 TGATIAFDATGG  250 (379)
T ss_dssp             HCCCEEEESCEE
T ss_pred             CCceEEEECCCc
Confidence            269999999984

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.41  E-value=0.00036  Score=49.43  Aligned_cols=45  Identities=13%  Similarity=0.211  Sum_probs=39.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVK   65 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~   65 (138)
                      .++.+|+++|+|+ ||.|++++..|.+.|+ +|.++.|+.++++++.
T Consensus       118 ~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La  163 (282)
T 3fbt_A          118 VEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIY  163 (282)
T ss_dssp             CCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHC
T ss_pred             CCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            4578999999998 6999999999999998 8999999988766544

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.40  E-value=0.00041  Score=50.37  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=49.6

Q ss_pred             CEEEEeCCCCchHHHH-HHHH-HHCCCE-EEEEecCcc---hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAET-TRVL-ALRGVH-VIMADRNMA---AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        25 k~~litG~~~~iG~~~-a~~l-~~~g~~-v~~~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ++++|+|+ |++|... ++.+ ...|++ |++++++++   +.+.+ .++     +..  .+  |..+.+ +.+ +.++ 
T Consensus       174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~l-----Ga~--~v--~~~~~~-~~~-i~~~-  239 (357)
T 2b5w_A          174 SSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EEL-----DAT--YV--DSRQTP-VED-VPDV-  239 (357)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HHT-----TCE--EE--ETTTSC-GGG-HHHH-
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HHc-----CCc--cc--CCCccC-HHH-HHHh-
Confidence            89999999 9999999 8766 567986 999999887   65543 222     332  22  544322 223 4443 


Q ss_pred             hcCCCccEEEECccc
Q 042455           99 ARALPLNILINKAGI  113 (138)
Q Consensus        99 ~~~~~id~lv~~ag~  113 (138)
                      .  +.+|++|.++|.
T Consensus       240 ~--gg~Dvvid~~g~  252 (357)
T 2b5w_A          240 Y--EQMDFIYEATGF  252 (357)
T ss_dssp             S--CCEEEEEECSCC
T ss_pred             C--CCCCEEEECCCC
Confidence            2  379999999884

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.38  E-value=0.00017  Score=49.30  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=52.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .+.++|.|+ |.+|..+++.|.+.|+ |++++++++..+.+.     .  +  +.++.+|.++.+.++++      ....
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~--~--~~~i~gd~~~~~~l~~a------~i~~   71 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S--G--ANFVHGDPTRVSDLEKA------NVRG   71 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T--T--CEEEESCTTCHHHHHHT------TCTT
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c--C--CeEEEcCCCCHHHHHhc------Ccch
Confidence            457888987 7999999999999999 999999887654432     1  2  56778888888765443      1235


Q ss_pred             ccEEEECcc
Q 042455          104 LNILINKAG  112 (138)
Q Consensus       104 id~lv~~ag  112 (138)
                      .|.+|.+.+
T Consensus        72 ad~vi~~~~   80 (234)
T 2aef_A           72 ARAVIVDLE   80 (234)
T ss_dssp             CSEEEECCS
T ss_pred             hcEEEEcCC
Confidence            677777665

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.37  E-value=0.0006  Score=49.76  Aligned_cols=79  Identities=16%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~  100 (138)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +...   ..|..+ .+++.+.+.+... 
T Consensus       191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-----Ga~~---vi~~~~~~~~~~~~i~~~t~-  259 (373)
T 1p0f_A          191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL-----GATE---CLNPKDYDKPIYEVICEKTN-  259 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT-----TCSE---EECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc-----CCcE---EEecccccchHHHHHHHHhC-
Confidence            5789999995 8999999987777898 8999999887765432 22     3321   123332 1123333333322 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                       +.+|++|.++|.
T Consensus       260 -gg~Dvvid~~g~  271 (373)
T 1p0f_A          260 -GGVDYAVECAGR  271 (373)
T ss_dssp             -SCBSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999984

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.37  E-value=0.0004  Score=46.57  Aligned_cols=41  Identities=15%  Similarity=0.247  Sum_probs=35.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~   66 (138)
                      +++|+|++|.+|.++++.|++.|++|.+++|++++.+...+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~   42 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAA   42 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            47889999999999999999999999999999877665443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.34  E-value=0.0011  Score=48.18  Aligned_cols=80  Identities=13%  Similarity=0.132  Sum_probs=54.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhc-CCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQ-NPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      |.++++.|+|++|.+|..++..++..|.  +|++++.++++++....+|... ++..++.+ .   ++.   ...+    
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d~---~~al----   74 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SDI---KEAL----   74 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SCH---HHHH----
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CCH---HHHh----
Confidence            4567899999999999999999999984  7999999988777666666543 22222221 1   121   1111    


Q ss_pred             hcCCCccEEEECcccCC
Q 042455           99 ARALPLNILINKAGICG  115 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~  115 (138)
                         ..-|++|.++|...
T Consensus        75 ---~dADvVvitaG~p~   88 (343)
T 3fi9_A           75 ---TDAKYIVSSGGAPR   88 (343)
T ss_dssp             ---TTEEEEEECCC---
T ss_pred             ---CCCCEEEEccCCCC
Confidence               24799999999753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.34  E-value=0.0054  Score=43.43  Aligned_cols=39  Identities=23%  Similarity=0.263  Sum_probs=34.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      +++.|.|+ |.+|.++|..|++.|++|++++++++.++..
T Consensus        16 ~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            57888988 7999999999999999999999998776653

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.33  E-value=0.0014  Score=46.90  Aligned_cols=89  Identities=18%  Similarity=0.167  Sum_probs=57.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH-------HHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA-------IVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ...+++.|+|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.       +.+......+.++.  +.+...++.++
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~--vp~~~~~~~v~  105 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSM--LENGAVVQDVL  105 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEEC--CSSHHHHHHHH
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEE--CCCHHHHHHHH
Confidence            34567888876 7999999999999999999999998876654321       11111123343333  33456677766


Q ss_pred             H--HHHhcCCCccEEEECccc
Q 042455           95 S--DFTARALPLNILINKAGI  113 (138)
Q Consensus        95 ~--~~~~~~~~id~lv~~ag~  113 (138)
                      .  .+.....+=.++|+....
T Consensus       106 ~~~~~~~~l~~~~~vi~~st~  126 (320)
T 4dll_A          106 FAQGVAAAMKPGSLFLDMASI  126 (320)
T ss_dssp             TTTCHHHHCCTTCEEEECSCC
T ss_pred             cchhHHhhCCCCCEEEecCCC
Confidence            5  555444455667766653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.30  E-value=0.0034  Score=45.84  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=56.2

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH----------HHHhcCCCCeeEEEEecCCCH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV----------AIVMQNPAAKVDVMELDLSSL   87 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~----------~l~~~~~~~~~~~~~~D~~~~   87 (138)
                      .+.+|+++++.|+|. |.+|..+++.|++.|++|.+.+|++++.+.+..          ++.......++.++.+--  .
T Consensus        16 ~~~Mm~~mkIgiIGl-G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~--~   92 (358)
T 4e21_A           16 ENLYFQSMQIGMIGL-GRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPA--A   92 (358)
T ss_dssp             ------CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCG--G
T ss_pred             chhhhcCCEEEEECc-hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCH--H
Confidence            334466678888985 799999999999999999999999877655422          111111011444443322  2


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECccc
Q 042455           88 ASVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                       .++.+++++.....+=+++|.+...
T Consensus        93 -~v~~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           93 -VVDSMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             -GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred             -HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence             5666777766655555677766654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.28  E-value=0.0013  Score=48.43  Aligned_cols=79  Identities=24%  Similarity=0.256  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|++++|+|+ |++|...++.+...|+ +|+++++++++.+.+. ++     +..    ..|.++.+.+.+.+.+.. ..
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~-~l-----Ga~----~i~~~~~~~~~~~v~~~t-~g  252 (398)
T 1kol_A          185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQ-----GFE----IADLSLDTPLHEQIAALL-GE  252 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT-----TCE----EEETTSSSCHHHHHHHHH-SS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH-Hc-----CCc----EEccCCcchHHHHHHHHh-CC
Confidence            5789999995 9999999887777898 7899998877755432 22     443    235443332222232222 11


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.++|.
T Consensus       253 ~g~Dvvid~~G~  264 (398)
T 1kol_A          253 PEVDCAVDAVGF  264 (398)
T ss_dssp             SCEEEEEECCCT
T ss_pred             CCCCEEEECCCC
Confidence            369999999984

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.28  E-value=0.0015  Score=46.72  Aligned_cols=79  Identities=14%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEec--CcchhHHHHHHHHhc--CCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADR--NMAAGRDVKVAIVMQ--NPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r--~~~~~~~~~~~l~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++||||+|.+|..++..|+..|.  .+.++++  ++++++....++...  .-+..+.....+    ++       ..+
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~-------l~~   70 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DE-------NLR   70 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TT-------CGG
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cc-------hHH
Confidence            589999999999999999998874  6888998  655444433334321  111122222211    00       112


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      .+...|++|+.||...
T Consensus        71 al~gaD~Vi~~Ag~~~   86 (313)
T 1hye_A           71 IIDESDVVIITSGVPR   86 (313)
T ss_dssp             GGTTCSEEEECCSCCC
T ss_pred             HhCCCCEEEECCCCCC
Confidence            2346899999999754

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.28  E-value=0.0017  Score=46.92  Aligned_cols=80  Identities=14%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCC-CeeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPA-AKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +..++++.|+|+ |.+|.+++..|+..|.  +|+++++++++++....+|....+- ..+.....|              
T Consensus         6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--------------   70 (326)
T 3vku_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--------------   70 (326)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--------------
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--------------
Confidence            456678999996 8999999999999886  8999999988887777777643210 122222211              


Q ss_pred             HhcCCCccEEEECcccCC
Q 042455           98 TARALPLNILINKAGICG  115 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~  115 (138)
                      .+.+..-|++|..+|...
T Consensus        71 ~~a~~~aDiVvi~ag~~~   88 (326)
T 3vku_A           71 YSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             GGGGTTCSEEEECCCCC-
T ss_pred             HHHhcCCCEEEECCCCCC
Confidence            122346799999999753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.27  E-value=0.0014  Score=47.81  Aligned_cols=78  Identities=14%  Similarity=0.140  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+ +++     +....   .|..+.+-.+. +.+..  .
T Consensus       190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~~v---i~~~~~~~~~~-~~~~~--~  256 (371)
T 1f8f_A          190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQL-----GATHV---INSKTQDPVAA-IKEIT--D  256 (371)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHH-----TCSEE---EETTTSCHHHH-HHHHT--T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc-----CCCEE---ecCCccCHHHH-HHHhc--C
Confidence            5789999995 8999999987777898 699999887765543 233     33221   23333222222 22221  1


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +.+|++|.++|.
T Consensus       257 gg~D~vid~~g~  268 (371)
T 1f8f_A          257 GGVNFALESTGS  268 (371)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCcEEEECCCC
Confidence            379999999984

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.26  E-value=0.00078  Score=50.16  Aligned_cols=73  Identities=21%  Similarity=0.278  Sum_probs=54.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ..++|.|. |.+|+.+++.|.+.|..|++++++++..+.+..    .  +  +.++.+|.++.+.++++      ...+.
T Consensus         5 ~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~--g--~~vi~GDat~~~~L~~a------gi~~A   69 (413)
T 3l9w_A            5 MRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F--G--MKVFYGDATRMDLLESA------GAAKA   69 (413)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T--T--CCCEESCTTCHHHHHHT------TTTTC
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C--C--CeEEEcCCCCHHHHHhc------CCCcc
Confidence            35888887 789999999999999999999999887665432    1  2  44677888887766544      22356


Q ss_pred             cEEEECcc
Q 042455          105 NILINKAG  112 (138)
Q Consensus       105 d~lv~~ag  112 (138)
                      |++|.+.+
T Consensus        70 ~~viv~~~   77 (413)
T 3l9w_A           70 EVLINAID   77 (413)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            77777765

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.26  E-value=0.003  Score=44.81  Aligned_cols=81  Identities=14%  Similarity=0.154  Sum_probs=53.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .+++.|+||.|.+|.++++.|.+.|++|.+++|+++....  ..+    ....+.++.+-..   .+..+++++.....+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~~~~--~~~----~~aDvVilavp~~---~~~~vl~~l~~~l~~   91 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE--SIL----ANADVVIVSVPIN---LTLETIERLKPYLTE   91 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH--HHH----TTCSEEEECSCGG---GHHHHHHHHGGGCCT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcccCHH--HHh----cCCCEEEEeCCHH---HHHHHHHHHHhhcCC
Confidence            3568899988999999999999999999999998754111  111    1355666655443   366666666544433


Q ss_pred             ccEEEECccc
Q 042455          104 LNILINKAGI  113 (138)
Q Consensus       104 id~lv~~ag~  113 (138)
                      =.+++..+++
T Consensus        92 ~~iv~~~~sv  101 (298)
T 2pv7_A           92 NMLLADLTSV  101 (298)
T ss_dssp             TSEEEECCSC
T ss_pred             CcEEEECCCC
Confidence            2355555543

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.25  E-value=0.0034  Score=44.75  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEec--CcchhHHHHHHHHhcCC-CCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADR--NMAAGRDVKVAIVMQNP-AAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r--~~~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++||||+|.+|..++..|+..|.  .+.++++  ++++++....++..... ...+.... +  +.           +.
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~-----------~a   67 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GY-----------ED   67 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CG-----------GG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CH-----------HH
Confidence            589999999999999999998875  6899998  76655444444433210 12222222 2  11           11


Q ss_pred             CCCccEEEECcccCC
Q 042455          101 ALPLNILINKAGICG  115 (138)
Q Consensus       101 ~~~id~lv~~ag~~~  115 (138)
                      +...|++|+.+|...
T Consensus        68 ~~~aDvVi~~ag~~~   82 (303)
T 1o6z_A           68 TAGSDVVVITAGIPR   82 (303)
T ss_dssp             GTTCSEEEECCCCCC
T ss_pred             hCCCCEEEEcCCCCC
Confidence            246899999999754

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.24  E-value=0.0023  Score=45.04  Aligned_cols=85  Identities=12%  Similarity=0.096  Sum_probs=56.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC---EEEEEecCcchhHHHHHHH--------HhcCCCCeeEEEEecCCCHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV---HVIMADRNMAAGRDVKVAI--------VMQNPAAKVDVMELDLSSLASVRK   92 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~---~v~~~~r~~~~~~~~~~~l--------~~~~~~~~~~~~~~D~~~~~~~~~   92 (138)
                      .+++.|+|+ |.+|.++++.|++.|+   +|.+++|++++.+.+.+.+        .+.....++.++.+   .+..+..
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav---~p~~~~~   78 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV---KPHQIKM   78 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS---CGGGHHH
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe---CHHHHHH
Confidence            356788888 8999999999999998   8999999998877665431        11111344555544   3456667


Q ss_pred             HHHHHHhc-CCCccEEEECcc
Q 042455           93 FASDFTAR-ALPLNILINKAG  112 (138)
Q Consensus        93 ~~~~~~~~-~~~id~lv~~ag  112 (138)
                      +++++... ..+=.++|.+++
T Consensus        79 vl~~l~~~~l~~~~iiiS~~a   99 (280)
T 3tri_A           79 VCEELKDILSETKILVISLAV   99 (280)
T ss_dssp             HHHHHHHHHHTTTCEEEECCT
T ss_pred             HHHHHHhhccCCCeEEEEecC
Confidence            77776543 322237776654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.23  E-value=0.00016  Score=51.14  Aligned_cols=43  Identities=16%  Similarity=0.141  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRD   63 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~   63 (138)
                      .++.+|+++|+|+ ||.|++++..|++.|+ +|.++.|+.+++++
T Consensus       113 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          113 EGIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             TTGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            3577899999998 7999999999999998 89999999877654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=97.22  E-value=0.00067  Score=49.37  Aligned_cols=63  Identities=25%  Similarity=0.333  Sum_probs=51.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+.+++|.|+ ||+|.++++.|+..|. ++.+++.+                   ..+++.+...+.+..|..++..+.
T Consensus        34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~  112 (346)
T 1y8q_A           34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT  112 (346)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence            56789999997 6999999999999998 89888542                   346778888888888888888777


Q ss_pred             ecCC
Q 042455           82 LDLS   85 (138)
Q Consensus        82 ~D~~   85 (138)
                      .+++
T Consensus       113 ~~~~  116 (346)
T 1y8q_A          113 EDIE  116 (346)
T ss_dssp             SCGG
T ss_pred             cccC
Confidence            6654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.18  E-value=0.0021  Score=46.21  Aligned_cols=80  Identities=20%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC--cchhHHHHHHHHhcC----CCCeeEEEEecCCCHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN--MAAGRDVKVAIVMQN----PAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~--~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      .|+.+++.|+|+ |.+|..++..++..|. +|++++++  +++++....++....    ...++... .|   .      
T Consensus         5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-~d---~------   73 (315)
T 3tl2_A            5 TIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-SD---Y------   73 (315)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-SC---G------
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-CC---H------
Confidence            355678999997 8999999999999998 99999998  445444444443221    01222221 11   1      


Q ss_pred             HHHHHhcCCCccEEEECcccCCC
Q 042455           94 ASDFTARALPLNILINKAGICGT  116 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~~~  116 (138)
                           +.+..-|++|.++|..+.
T Consensus        74 -----~a~~~aDvVIiaag~p~k   91 (315)
T 3tl2_A           74 -----ADTADSDVVVITAGIARK   91 (315)
T ss_dssp             -----GGGTTCSEEEECCSCCCC
T ss_pred             -----HHhCCCCEEEEeCCCCCC
Confidence                 223467999999997643

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.17  E-value=0.00096  Score=47.51  Aligned_cols=68  Identities=7%  Similarity=0.020  Sum_probs=45.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|.+++|+|+ |++|...++.+...|++|++++ ++++.+.+ +++     +....+   |  |   .++    +   ..
T Consensus       142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~-~~l-----Ga~~v~---~--d---~~~----v---~~  198 (315)
T 3goh_A          142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALA-AKR-----GVRHLY---R--E---PSQ----V---TQ  198 (315)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH-HHH-----TEEEEE---S--S---GGG----C---CS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH-HHc-----CCCEEE---c--C---HHH----h---CC
Confidence            5889999999 9999999988878899999999 76665543 333     332222   2  2   111    1   34


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      ++|+++.++|.
T Consensus       199 g~Dvv~d~~g~  209 (315)
T 3goh_A          199 KYFAIFDAVNS  209 (315)
T ss_dssp             CEEEEECC---
T ss_pred             CccEEEECCCc
Confidence            68888888874

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.17  E-value=0.0016  Score=47.02  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=53.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcC----CCCeeEEEEecCCCHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQN----PAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      |+.+++.|+|+ |.+|.+++..|+..|. +|+++++++++++....++....    ...++.. ..|   .         
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d---~---------   70 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND---Y---------   70 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS---G---------
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC---H---------
Confidence            44567899998 9999999999999988 99999999988765555554321    0122222 112   1         


Q ss_pred             HHhcCCCccEEEECcccCC
Q 042455           97 FTARALPLNILINKAGICG  115 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~  115 (138)
                        +.+..-|++|..+|...
T Consensus        71 --~a~~~aDiVIiaag~p~   87 (324)
T 3gvi_A           71 --AAIEGADVVIVTAGVPR   87 (324)
T ss_dssp             --GGGTTCSEEEECCSCCC
T ss_pred             --HHHCCCCEEEEccCcCC
Confidence              12245799999999754

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=97.17  E-value=0.00086  Score=50.27  Aligned_cols=63  Identities=21%  Similarity=0.258  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEEe
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVMEL   82 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   82 (138)
                      .+.+++|.|+ ||+|.++++.|+..|. ++.+++.+                   ..+++.+.+.+++..|..++..+..
T Consensus        39 ~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~  117 (434)
T 1tt5_B           39 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  117 (434)
T ss_dssp             HTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEES
T ss_pred             cCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEec
Confidence            5678999998 7999999999999997 79898653                   1467777888888788888888777


Q ss_pred             cCCC
Q 042455           83 DLSS   86 (138)
Q Consensus        83 D~~~   86 (138)
                      ++++
T Consensus       118 ~i~~  121 (434)
T 1tt5_B          118 KIQD  121 (434)
T ss_dssp             CGGG
T ss_pred             ccch
Confidence            6653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.16  E-value=0.0033  Score=45.05  Aligned_cols=77  Identities=18%  Similarity=0.144  Sum_probs=50.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           26 TAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      ++.|+|++|.+|..++..|+..|  ..|+++++++  .+....++.......++.....    ..+.+..+       ..
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~----t~d~~~a~-------~~   68 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLG----PEQLPDCL-------KG   68 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEES----GGGHHHHH-------TT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecC----CCCHHHHh-------CC
Confidence            58899999999999999999888  5899999987  3344445543321122222210    11222222       25


Q ss_pred             ccEEEECcccCC
Q 042455          104 LNILINKAGICG  115 (138)
Q Consensus       104 id~lv~~ag~~~  115 (138)
                      .|++|+.+|...
T Consensus        69 aDvVvi~ag~~~   80 (314)
T 1mld_A           69 CDVVVIPAGVPR   80 (314)
T ss_dssp             CSEEEECCSCCC
T ss_pred             CCEEEECCCcCC
Confidence            799999999864

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=97.15  E-value=0.0012  Score=51.69  Aligned_cols=64  Identities=27%  Similarity=0.410  Sum_probs=52.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc-------------------chhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM-------------------AAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+.+++|.|+ ||+|.++++.|+..|. ++.+++.+.                   .+++.+...++...|..++..+.
T Consensus        15 L~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~   93 (640)
T 1y8q_B           15 VAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYH   93 (640)
T ss_dssp             HHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEE
T ss_pred             HhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEe
Confidence            45678999998 7999999999999997 899987642                   35666777888888888888888


Q ss_pred             ecCCC
Q 042455           82 LDLSS   86 (138)
Q Consensus        82 ~D~~~   86 (138)
                      .++++
T Consensus        94 ~~i~~   98 (640)
T 1y8q_B           94 DSIMN   98 (640)
T ss_dssp             SCTTS
T ss_pred             cccch
Confidence            87754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.14  E-value=0.00038  Score=50.12  Aligned_cols=84  Identities=21%  Similarity=0.146  Sum_probs=55.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.+|+++|.|++.-+|..+|+.|+..|++|.++.|+..+..+....+.    ........+..++++++.+.+.+    
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la----~~~~~~t~~~~t~~~~L~e~l~~----  245 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLK----LNKHHVEDLGEYSEDLLKKCSLD----  245 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSS----CCCCEEEEEEECCHHHHHHHHHH----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHh----hhcccccccccccHhHHHHHhcc----
Confidence            6899999999998888999999999999999999887433221111111    10011111122345666666665    


Q ss_pred             CCCccEEEECcccCC
Q 042455          101 ALPLNILINKAGICG  115 (138)
Q Consensus       101 ~~~id~lv~~ag~~~  115 (138)
                         -|++|..+|...
T Consensus       246 ---ADIVIsAtg~p~  257 (320)
T 1edz_A          246 ---SDVVITGVPSEN  257 (320)
T ss_dssp             ---CSEEEECCCCTT
T ss_pred             ---CCEEEECCCCCc
Confidence               599999998643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.14  E-value=0.0019  Score=47.56  Aligned_cols=79  Identities=19%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|.+++|+|+ |++|...++.+...|+ +|+++++++++.+.+.    ..  +..  .  .|..+.+.+...+.+... .
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~l--Ga~--~--i~~~~~~~~~~~~~~~~~-g  252 (398)
T 2dph_A          185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLS----DA--GFE--T--IDLRNSAPLRDQIDQILG-K  252 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----TT--TCE--E--EETTSSSCHHHHHHHHHS-S
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----Hc--CCc--E--EcCCCcchHHHHHHHHhC-C
Confidence            5789999996 9999999887777899 8999999877654422    22  332  2  354432221222222221 1


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.++|.
T Consensus       253 ~g~Dvvid~~g~  264 (398)
T 2dph_A          253 PEVDCGVDAVGF  264 (398)
T ss_dssp             SCEEEEEECSCT
T ss_pred             CCCCEEEECCCC
Confidence            269999999984

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.14  E-value=0.0021  Score=48.30  Aligned_cols=79  Identities=18%  Similarity=0.170  Sum_probs=53.0

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++.+|+++|.|. |+.|.++|+.|.++|++|.+.+++........+.|+..  +..  +....-.  +       +. 
T Consensus         4 ~~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~--gi~--~~~g~~~--~-------~~-   68 (451)
T 3lk7_A            4 ITTFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEE--GIK--VVCGSHP--L-------EL-   68 (451)
T ss_dssp             CCTTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHT--TCE--EEESCCC--G-------GG-
T ss_pred             hhhcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhC--CCE--EEECCCh--H-------Hh-
Confidence            34578999999999 68899999999999999999998764322334455543  333  2222111  0       01 


Q ss_pred             hcCCC-ccEEEECcccC
Q 042455           99 ARALP-LNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~-id~lv~~ag~~  114 (138)
                        ... .|.+|.+.|+.
T Consensus        69 --~~~~~d~vv~spgi~   83 (451)
T 3lk7_A           69 --LDEDFCYMIKNPGIP   83 (451)
T ss_dssp             --GGSCEEEEEECTTSC
T ss_pred             --hcCCCCEEEECCcCC
Confidence              123 79999999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.13  E-value=0.0057  Score=45.06  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=37.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK   65 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   65 (138)
                      +.+++++|+|+ |.+|...++.+...|++|.+++++.++.+...
T Consensus       182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  224 (381)
T 3p2y_A          182 VKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR  224 (381)
T ss_dssp             ECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            47889999999 79999999999999999999999988766543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.13  E-value=0.0074  Score=43.65  Aligned_cols=79  Identities=9%  Similarity=0.103  Sum_probs=55.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhc--CCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQ--NPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ...+++.|+|+ |.+|.+++..|+..|.  +|+++++++++++....+|...  ++... .....  .|.          
T Consensus        17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~-~i~~~--~d~----------   82 (331)
T 4aj2_A           17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTP-KIVSS--KDY----------   82 (331)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCC-EEEEC--SSG----------
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCC-eEEEc--CCH----------
Confidence            45678999997 8999999999999886  8999999988888777777643  21111 11111  121          


Q ss_pred             HhcCCCccEEEECcccCC
Q 042455           98 TARALPLNILINKAGICG  115 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~  115 (138)
                       +.+..-|++|..+|..+
T Consensus        83 -~~~~~aDiVvi~aG~~~   99 (331)
T 4aj2_A           83 -SVTANSKLVIITAGARQ   99 (331)
T ss_dssp             -GGGTTEEEEEECCSCCC
T ss_pred             -HHhCCCCEEEEccCCCC
Confidence             12346799999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.12  E-value=0.0054  Score=43.05  Aligned_cols=85  Identities=21%  Similarity=0.164  Sum_probs=54.0

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH------HHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA------IVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~------l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +++.|+|++|.+|.++++.|.+.|++|++++|++++.+.+...      ..+.....++.++.+   ....+..+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av---~~~~~~~v~~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLAL---PDNIIEKVAEDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECS---CHHHHHHHHHHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcC---CchHHHHHHHHHH
Confidence            4689999999999999999999999999999988776554320      000001223333222   2445777777776


Q ss_pred             hcCCCccEEEECcc
Q 042455           99 ARALPLNILINKAG  112 (138)
Q Consensus        99 ~~~~~id~lv~~ag  112 (138)
                      ....+=.++|.+..
T Consensus        89 ~~l~~~~ivv~~s~  102 (286)
T 3c24_A           89 PRVRPGTIVLILDA  102 (286)
T ss_dssp             GGSCTTCEEEESCS
T ss_pred             HhCCCCCEEEECCC
Confidence            54433335555433

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.11  E-value=0.0013  Score=48.23  Aligned_cols=47  Identities=19%  Similarity=0.269  Sum_probs=40.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   68 (138)
                      ++.||+++|+|. |.+|..+|+.|.+.|++|++.+++.+++++..+++
T Consensus       170 ~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~  216 (364)
T 1leh_A          170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE  216 (364)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc
Confidence            689999999997 78999999999999999999999887776655543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.09  E-value=0.0012  Score=47.73  Aligned_cols=79  Identities=13%  Similarity=0.085  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+.+++|+|+ |++|...++.+...|+ +|+++++++++.+. ..++     +...   ..|..+.+..+.+.+ .. ..
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~-~~~l-----Ga~~---vi~~~~~~~~~~v~~-~t-~g  233 (352)
T 3fpc_A          166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDI-ALEY-----GATD---IINYKNGDIVEQILK-AT-DG  233 (352)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHH-HHHH-----TCCE---EECGGGSCHHHHHHH-HT-TT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHH-HHHh-----CCce---EEcCCCcCHHHHHHH-Hc-CC
Confidence            5789999985 8999999888777899 79999988766543 2333     3321   223333222222222 11 11


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      .++|+++.++|.
T Consensus       234 ~g~D~v~d~~g~  245 (352)
T 3fpc_A          234 KGVDKVVIAGGD  245 (352)
T ss_dssp             CCEEEEEECSSC
T ss_pred             CCCCEEEECCCC
Confidence            259999999885

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.07  E-value=0.0026  Score=45.79  Aligned_cols=79  Identities=18%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ..+.+++|+|+ |++|...++.+... |++|+++++++++.+.+. ++     +....   .|..+ +..+.+ .+... 
T Consensus       170 ~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~l-----Ga~~~---i~~~~-~~~~~v-~~~t~-  236 (345)
T 3jv7_A          170 GPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-EV-----GADAA---VKSGA-GAADAI-RELTG-  236 (345)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-HT-----TCSEE---EECST-THHHHH-HHHHG-
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hc-----CCCEE---EcCCC-cHHHHH-HHHhC-
Confidence            35789999998 89999988877666 679999999887765432 22     33222   22222 222222 22211 


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      ...+|+++.++|.
T Consensus       237 g~g~d~v~d~~G~  249 (345)
T 3jv7_A          237 GQGATAVFDFVGA  249 (345)
T ss_dssp             GGCEEEEEESSCC
T ss_pred             CCCCeEEEECCCC
Confidence            1269999999984

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.06  E-value=0.0032  Score=44.87  Aligned_cols=89  Identities=11%  Similarity=0.050  Sum_probs=55.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH-------HHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA-------IVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ...+++.|+|. |.+|..+++.|++.|++|.+.+|++++.+.+...       +.+.....++.++.  +.+...++.++
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~--vp~~~~~~~v~   95 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAM--LSDPCAALSVV   95 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEEC--CSSHHHHHHHH
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEE--cCCHHHHHHHH
Confidence            34457888875 7999999999999999999999998877665421       00000012333332  33455666666


Q ss_pred             ---HHHHhcCCCccEEEECccc
Q 042455           95 ---SDFTARALPLNILINKAGI  113 (138)
Q Consensus        95 ---~~~~~~~~~id~lv~~ag~  113 (138)
                         +++.....+=.++|+....
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~  117 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTV  117 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCC
T ss_pred             hCchhhhhccCCCCEEEECCCC
Confidence               5544444444566766653

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.04  E-value=0.0045  Score=45.31  Aligned_cols=67  Identities=12%  Similarity=0.167  Sum_probs=48.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      .+.+.+|+++|.|+ |.+|+.+++.+.+.|+++++++.++.....   .+     ..  ..+..|..|.+.+.+++++
T Consensus         7 ~~~~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~---~~-----ad--~~~~~~~~d~~~l~~~~~~   73 (377)
T 3orq_A            7 NKLKFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR---YV-----AH--EFIQAKYDDEKALNQLGQK   73 (377)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG---GG-----SS--EEEECCTTCHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh---hh-----CC--EEEECCCCCHHHHHHHHHh
Confidence            34467899999987 579999999999999999999876542110   01     11  3456788888888777654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.02  E-value=0.0057  Score=43.79  Aligned_cols=87  Identities=10%  Similarity=0.114  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHH---------HHh-cCCCCeeEEEEecCCCHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVA---------IVM-QNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~---------l~~-~~~~~~~~~~~~D~~~~~~~   90 (138)
                      ..+++.|+| .|.+|.++++.|.+.|+  +|++++|+++..+.....         +.+ ......+.++.+-..   .+
T Consensus        32 ~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~---~~  107 (314)
T 3ggo_A           32 SMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR---TF  107 (314)
T ss_dssp             SCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG---GH
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH---HH
Confidence            347899999 58999999999999999  999999998776554321         011 111334455444332   34


Q ss_pred             HHHHHHHHhcCCCccEEEECccc
Q 042455           91 RKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      ..+++++.....+=.+++.++++
T Consensus       108 ~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          108 REIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHHHHhhccCCCcEEEECCCC
Confidence            55666665544333455555543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.01  E-value=0.0057  Score=41.10  Aligned_cols=78  Identities=10%  Similarity=0.232  Sum_probs=50.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +..+..+++.|.| .|.+|.++++.|++.|.+|.+.+|+++           .....++.++.+-   ...++.+++++.
T Consensus        14 ~~~~~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~~-----------~~~~aD~vi~av~---~~~~~~v~~~l~   78 (209)
T 2raf_A           14 NLYFQGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------ATTLGEIVIMAVP---YPALAALAKQYA   78 (209)
T ss_dssp             ------CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTCC-----------CSSCCSEEEECSC---HHHHHHHHHHTH
T ss_pred             ccccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHH-----------HhccCCEEEEcCC---cHHHHHHHHHHH
Confidence            4456677899999 589999999999999999999999876           1114555555543   566677777665


Q ss_pred             hcCCCccEEEECcc
Q 042455           99 ARALPLNILINKAG  112 (138)
Q Consensus        99 ~~~~~id~lv~~ag  112 (138)
                      .... =.++|..+.
T Consensus        79 ~~~~-~~~vi~~~~   91 (209)
T 2raf_A           79 TQLK-GKIVVDITN   91 (209)
T ss_dssp             HHHT-TSEEEECCC
T ss_pred             HhcC-CCEEEEECC
Confidence            4333 235555443

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=97.00  E-value=0.0015  Score=46.64  Aligned_cols=40  Identities=28%  Similarity=0.403  Sum_probs=35.2

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      ++ ++|+|++|++|...++.+...|++|+++++++++.+.+
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~  187 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYL  187 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            45 99999999999999998888999999999988876654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.00  E-value=0.0026  Score=43.46  Aligned_cols=40  Identities=15%  Similarity=0.310  Sum_probs=34.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      ..++++|.+||+|+ |.+|...++.|++.|++|.+++.+..
T Consensus        26 fl~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~   65 (223)
T 3dfz_A           26 MLDLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVS   65 (223)
T ss_dssp             EECCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred             EEEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            34789999999998 58999999999999999999987643

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.99  E-value=0.017  Score=41.94  Aligned_cols=91  Identities=16%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-------EEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-------HVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVR   91 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-------~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~   91 (138)
                      .|+.-++.|+||+|+||+.++..|+....       .+.+++.++.  .++-...+|..............+  +..   
T Consensus        21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~--~~~---   95 (345)
T 4h7p_A           21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA--DPR---   95 (345)
T ss_dssp             -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES--CHH---
T ss_pred             CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC--ChH---
Confidence            46677899999999999999998887532       6889988753  334445556543212222222221  221   


Q ss_pred             HHHHHHHhcCCCccEEEECcccCCCCCccCHHH
Q 042455           92 KFASDFTARALPLNILINKAGICGTPFMLSKDN  124 (138)
Q Consensus        92 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~  124 (138)
                             +.+..-|++|..||..+.+. .+.++
T Consensus        96 -------~a~~~advVvi~aG~prkpG-mtR~D  120 (345)
T 4h7p_A           96 -------VAFDGVAIAIMCGAFPRKAG-MERKD  120 (345)
T ss_dssp             -------HHTTTCSEEEECCCCCCCTT-CCHHH
T ss_pred             -------HHhCCCCEEEECCCCCCCCC-CCHHH
Confidence                   12346799999999865333 34444

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.98  E-value=0.0026  Score=45.96  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=36.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l   68 (138)
                      ..++.|+|+ |.+|.+++..|+..|. +|.+.++++++++.....+
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l   53 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDL   53 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHH
Confidence            347888998 8999999999999997 9999999988776644433

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.98  E-value=0.0058  Score=43.22  Aligned_cols=85  Identities=16%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH-------HHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA-------IVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +++.|+|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.       +.+... .++.+  .=+.+...++.+++++
T Consensus        16 ~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi--~~vp~~~~~~~v~~~l   91 (296)
T 3qha_A           16 LKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIH--ITVLDDAQVREVVGEL   91 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEE--ECCSSHHHHHHHHHHH
T ss_pred             CeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEE--EECCChHHHHHHHHHH
Confidence            45777775 7999999999999999999999998877665431       111111 33333  3334567788888887


Q ss_pred             HhcCCCccEEEECccc
Q 042455           98 TARALPLNILINKAGI  113 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~  113 (138)
                      .....+=.++|+....
T Consensus        92 ~~~l~~g~ivv~~st~  107 (296)
T 3qha_A           92 AGHAKPGTVIAIHSTI  107 (296)
T ss_dssp             HTTCCTTCEEEECSCC
T ss_pred             HHhcCCCCEEEEeCCC
Confidence            7665555677777654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.96  E-value=0.001  Score=47.65  Aligned_cols=39  Identities=31%  Similarity=0.506  Sum_probs=34.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      +++|+|++|++|...++.+...|++|+++++++++.+.+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~  191 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL  191 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            799999999999999998888899999999987776543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.93  E-value=0.0016  Score=49.10  Aligned_cols=73  Identities=15%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +++|.|+ |.+|..+|+.|..+|++|++++++++..+.+..++       .+..+..|.++++.++++      ....-|
T Consensus         5 ~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A------gi~~ad   70 (461)
T 4g65_A            5 KIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA------GAQDAD   70 (461)
T ss_dssp             EEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH------TTTTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc------CCCcCC
Confidence            4777777 69999999999999999999999988877655432       356788999998887655      223568


Q ss_pred             EEEECcc
Q 042455          106 ILINKAG  112 (138)
Q Consensus       106 ~lv~~ag  112 (138)
                      .+|...+
T Consensus        71 ~~ia~t~   77 (461)
T 4g65_A           71 MLVAVTN   77 (461)
T ss_dssp             EEEECCS
T ss_pred             EEEEEcC
Confidence            8876655

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.92  E-value=0.015  Score=43.21  Aligned_cols=43  Identities=23%  Similarity=0.192  Sum_probs=37.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK   65 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   65 (138)
                      +.+.+++|+|+ |.+|...++.+...|++|+++++++.+.+...
T Consensus       188 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  230 (405)
T 4dio_A          188 VPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA  230 (405)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            56789999999 79999999999999999999999988765543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.91  E-value=0.002  Score=45.61  Aligned_cols=43  Identities=26%  Similarity=0.313  Sum_probs=37.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR   62 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~   62 (138)
                      .+++||+++|+|+++-+|+.++..|+..|++|.++.+....++
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~  198 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS  198 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence            4689999999999988999999999999999999887654433

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.89  E-value=0.011  Score=40.97  Aligned_cols=85  Identities=15%  Similarity=0.270  Sum_probs=55.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHH--------hcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIV--------MQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~--------~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      .++.|+|+ |.+|..+++.|.+.|++ |.+++|++++.+.....+.        +......+.++.   .....+..+++
T Consensus        11 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~a---v~~~~~~~v~~   86 (266)
T 3d1l_A           11 TPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVS---LKDSAFAELLQ   86 (266)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEEC---CCHHHHHHHHH
T ss_pred             CeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEe---cCHHHHHHHHH
Confidence            35888887 89999999999999998 8889999887766554321        111122222222   23445677887


Q ss_pred             HHHhcCCCccEEEECccc
Q 042455           96 DFTARALPLNILINKAGI  113 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~  113 (138)
                      ++.....+=.++|++.+.
T Consensus        87 ~l~~~~~~~~ivv~~s~~  104 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAGS  104 (266)
T ss_dssp             HHHTTCCTTCEEEECCTT
T ss_pred             HHHhhcCCCcEEEECCCC
Confidence            776544344567777654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.88  E-value=0.0028  Score=44.94  Aligned_cols=43  Identities=23%  Similarity=0.252  Sum_probs=37.8

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR   62 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~   62 (138)
                      ..++.+++++|.|+ |.+|+++++.+...|++|++++|+.++.+
T Consensus       152 ~~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~  194 (300)
T 2rir_A          152 DYTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLA  194 (300)
T ss_dssp             SSCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            35688999999997 89999999999999999999999876544

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.83  E-value=0.014  Score=42.54  Aligned_cols=42  Identities=19%  Similarity=0.201  Sum_probs=35.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~   66 (138)
                      ..++.|.|+ |.+|.+++..|++.|++|.+.+|+++..+.+..
T Consensus        29 ~mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~   70 (356)
T 3k96_A           29 KHPIAILGA-GSWGTALALVLARKGQKVRLWSYESDHVDEMQA   70 (356)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHH
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            456888887 799999999999999999999999877665544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.81  E-value=0.0035  Score=44.38  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=37.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR   62 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~   62 (138)
                      .++.+++++|.|+ |.||+++++.+...|++|++++|+.++.+
T Consensus       151 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~  192 (293)
T 3d4o_A          151 FTIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLA  192 (293)
T ss_dssp             SCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            4688999999996 79999999999999999999999876543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.80  E-value=0.0016  Score=45.75  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=37.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      ++.+++++|.|+ |++|.++++.|.+.|++|.+++|+.++++++
T Consensus       126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l  168 (275)
T 2hk9_A          126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKL  168 (275)
T ss_dssp             TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHH
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            567899999997 7999999999999999999999987765543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.80  E-value=0.017  Score=41.54  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=54.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcC----CCCeeEEEEecCCCHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQN----PAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      |+.+++.|+|+ |.+|.+++..|+..|. +|+++++++++++....++....    ...++.. ..   +.         
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~-t~---d~---------   68 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG-TN---DY---------   68 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ES---CG---------
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE-cC---CH---------
Confidence            34467888895 8999999999999887 99999999988776666665321    0122221 11   11         


Q ss_pred             HHhcCCCccEEEECcccCCC
Q 042455           97 FTARALPLNILINKAGICGT  116 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~  116 (138)
                        +.+..-|++|+.+|....
T Consensus        69 --~a~~~aDvVIi~ag~p~k   86 (321)
T 3p7m_A           69 --KDLENSDVVIVTAGVPRK   86 (321)
T ss_dssp             --GGGTTCSEEEECCSCCCC
T ss_pred             --HHHCCCCEEEEcCCcCCC
Confidence              122357999999997643

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.78  E-value=0.0084  Score=43.37  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC--E-----EEEEecCc--chhHHHHHHHHhc-CCCCeeEEEEecCCCHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV--H-----VIMADRNM--AAGRDVKVAIVMQ-NPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~--~-----v~~~~r~~--~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .+++||||+|.||..++..|+..|.  +     +++++.++  +.++-...+|... .+-  ..  ...+.+  ..    
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~--~~--~~~~~~--~~----   73 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL--LK--DVIATD--KE----   73 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT--EE--EEEEES--CH----
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc--cC--CEEEcC--Cc----
Confidence            4789999999999999999998775  4     89999875  3556666666653 121  11  111111  11    


Q ss_pred             HHHHhcCCCccEEEECcccCC
Q 042455           95 SDFTARALPLNILINKAGICG  115 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~  115 (138)
                         .+.+..-|++|+.||...
T Consensus        74 ---~~~~~daDvVvitAg~pr   91 (333)
T 5mdh_A           74 ---EIAFKDLDVAILVGSMPR   91 (333)
T ss_dssp             ---HHHTTTCSEEEECCSCCC
T ss_pred             ---HHHhCCCCEEEEeCCCCC
Confidence               112346799999999764

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.77  E-value=0.0044  Score=43.64  Aligned_cols=42  Identities=14%  Similarity=0.072  Sum_probs=36.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      +.||+++|.|+++-+|+.+++.|+..|++|.++.+....+++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~  189 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGS  189 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHH
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHH
Confidence            899999999999889999999999999999998876544443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.72  E-value=0.009  Score=41.92  Aligned_cols=86  Identities=10%  Similarity=0.057  Sum_probs=55.4

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH-------HHhcCCCCeeEEEEecCCCHHHHHHHH---
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA-------IVMQNPAAKVDVMELDLSSLASVRKFA---   94 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~D~~~~~~~~~~~---   94 (138)
                      +++.|.|. |.+|..+++.|++.|++|.+.+|++++.+...+.       +.+.....++.++.  +.+...++.++   
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~--vp~~~~~~~v~~~~   78 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAM--LADPAAAEEVCFGK   78 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEEC--CSSHHHHHHHHHST
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEE--cCCHHHHHHHHcCc
Confidence            46778876 7999999999999999999999998887665431       11100012333332  33456677777   


Q ss_pred             HHHHhcCCCccEEEECccc
Q 042455           95 SDFTARALPLNILINKAGI  113 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~  113 (138)
                      +++.....+=.++|+..+.
T Consensus        79 ~~l~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           79 HGVLEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             TCHHHHCCTTCEEEECSCC
T ss_pred             chHhhcCCCCCEEEeCCCC
Confidence            5555544444567776553

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.70  E-value=0.0032  Score=43.77  Aligned_cols=47  Identities=26%  Similarity=0.324  Sum_probs=39.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   68 (138)
                      .++.+ +++|.|+ |++|+++++.|.+.|++|.+++|+.++.+++.+.+
T Consensus       113 ~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~  159 (263)
T 2d5c_A          113 IPLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF  159 (263)
T ss_dssp             CCCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred             CCCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            35678 8999997 77999999999999999999999987776665544

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.70  E-value=0.022  Score=39.57  Aligned_cols=82  Identities=18%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH---------HHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA---------IVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~---------l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ++.|+| .|.+|.++++.|.+.|++|++++|++++.+.....         +... ....+.++.+   .+..+..++++
T Consensus         2 ~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av---~~~~~~~~~~~   76 (279)
T 2f1k_A            2 KIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCT---PIQLILPTLEK   76 (279)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECS---CHHHHHHHHHH
T ss_pred             EEEEEc-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEEC---CHHHHHHHHHH
Confidence            477888 58999999999999999999999988776654310         0011 1222333222   34567777777


Q ss_pred             HHhcCCCccEEEECcc
Q 042455           97 FTARALPLNILINKAG  112 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag  112 (138)
                      +.....+=.++++.++
T Consensus        77 l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           77 LIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             HGGGSCTTCEEEECCS
T ss_pred             HHhhCCCCCEEEECCC
Confidence            7655433345665544

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.70  E-value=0.0045  Score=43.80  Aligned_cols=43  Identities=30%  Similarity=0.329  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR   62 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~   62 (138)
                      .++.||+++|.|.++-+|+.++..|+..|++|.++.+....++
T Consensus       157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~  199 (286)
T 4a5o_A          157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA  199 (286)
T ss_dssp             CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH
Confidence            4689999999999988999999999999999999877554433

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.69  E-value=0.0038  Score=44.26  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=53.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH--------HHhcCCCCeeEEEEecCCCHHHHHHHH-
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA--------IVMQNPAAKVDVMELDLSSLASVRKFA-   94 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~--------l~~~~~~~~~~~~~~D~~~~~~~~~~~-   94 (138)
                      .+++.|+|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.        +.+.....++.++.  +.+...++.++ 
T Consensus         7 ~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~--vp~~~~~~~v~~   83 (303)
T 3g0o_A            7 DFHVGIVGL-GSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVIL--VVNAAQVRQVLF   83 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEEC--CSSHHHHHHHHC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEE--CCCHHHHHHHHh
Confidence            346777765 7999999999999999999999998877665432        00001122333322  33455666665 


Q ss_pred             --HHHHhcCCCccEEEECccc
Q 042455           95 --SDFTARALPLNILINKAGI  113 (138)
Q Consensus        95 --~~~~~~~~~id~lv~~ag~  113 (138)
                        +++.....+=.++|+....
T Consensus        84 ~~~~l~~~l~~g~ivv~~st~  104 (303)
T 3g0o_A           84 GEDGVAHLMKPGSAVMVSSTI  104 (303)
T ss_dssp             --CCCGGGSCTTCEEEECSCC
T ss_pred             ChhhHHhhCCCCCEEEecCCC
Confidence              4444444444566666553

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.67  E-value=0.02  Score=43.49  Aligned_cols=42  Identities=26%  Similarity=0.230  Sum_probs=35.2

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~   66 (138)
                      -+++.|+|+ |.+|.++|..|++.|++|++.+++++.++....
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~   46 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGHQVLLYDISAEALTRAID   46 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence            345667776 799999999999999999999999988776544

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.66  E-value=0.0055  Score=43.67  Aligned_cols=40  Identities=28%  Similarity=0.393  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .+++||.++|.|.++-+|+.+++.|+..|++|.++.|...
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~  200 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS  200 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5689999999999988999999999999999999987544

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.65  E-value=0.011  Score=43.85  Aligned_cols=72  Identities=15%  Similarity=0.099  Sum_probs=52.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +.+.+|+++|.|+ |.+|+.+++.+.+.|++|++++.++.....   .+     ..  ..+..|..|.+.+.++++    
T Consensus        31 ~~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~---~~-----ad--~~~~~~~~d~~~l~~~a~----   95 (419)
T 4e4t_A           31 PILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAG---AV-----AD--RHLRAAYDDEAALAELAG----   95 (419)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHH---HH-----SS--EEECCCTTCHHHHHHHHH----
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchh---hh-----CC--EEEECCcCCHHHHHHHHh----
Confidence            3467899999987 479999999999999999998876543221   11     11  244578889988887773    


Q ss_pred             cCCCccEEEE
Q 042455          100 RALPLNILIN  109 (138)
Q Consensus       100 ~~~~id~lv~  109 (138)
                         ++|+++.
T Consensus        96 ---~~D~V~~  102 (419)
T 4e4t_A           96 ---LCEAVST  102 (419)
T ss_dssp             ---HCSEEEE
T ss_pred             ---cCCEEEE
Confidence               3788874

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=96.65  E-value=0.0058  Score=49.03  Aligned_cols=63  Identities=21%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEEe
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVMEL   82 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   82 (138)
                      .+.+++|.|+ ||+|..+++.|+..|. ++.+++.+                   ..+++.+.+.++...|..++..+..
T Consensus       410 ~~~~vlvvG~-GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np~~~v~~~~~  488 (805)
T 2nvu_B          410 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  488 (805)
T ss_dssp             HTCCEEEECC-SSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            5778999987 6999999999999997 89999774                   2456677788888888888888887


Q ss_pred             cCCC
Q 042455           83 DLSS   86 (138)
Q Consensus        83 D~~~   86 (138)
                      ++++
T Consensus       489 ~~~~  492 (805)
T 2nvu_B          489 KIQD  492 (805)
T ss_dssp             CGGG
T ss_pred             cccc
Confidence            7754

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.63  E-value=0.0036  Score=44.00  Aligned_cols=45  Identities=18%  Similarity=0.333  Sum_probs=39.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l   68 (138)
                      .+++++|.|+ ||.|++++..|.+.|+ +|.++.|+.++++++...+
T Consensus       118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~  163 (271)
T 1npy_A          118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY  163 (271)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            4678999997 7999999999999997 7999999998888777655

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.62  E-value=0.0084  Score=42.62  Aligned_cols=74  Identities=12%  Similarity=0.064  Sum_probs=49.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhc---CC-CCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQ---NP-AAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~---~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++.|+|+ |++|.+++..|+..|.  +|.++++++++++....++...   ++ ..++..  .  +|.+           
T Consensus         2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~--t--~d~~-----------   65 (294)
T 1oju_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--G--ADYS-----------   65 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE--E--SCGG-----------
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE--e--CCHH-----------
Confidence            4788999 9999999999999887  8999999988766433333322   21 122222  1  1211           


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      .+..-|++|..+|..+
T Consensus        66 a~~~aDiVViaag~~~   81 (294)
T 1oju_A           66 LLKGSEIIVVTAGLAR   81 (294)
T ss_dssp             GGTTCSEEEECCCCCC
T ss_pred             HhCCCCEEEECCCCCC
Confidence            1235699999999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.61  E-value=0.036  Score=40.05  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=54.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhc--CC-CCeeEEEEecCCCHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQ--NP-AAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~--~~-~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..+++.|+|+ |.+|..++..++..|.  .|++++.++++++....++...  ++ ..++.. ..|..            
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~-t~d~~------------   85 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS-GKDYS------------   85 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE-ESSSC------------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE-cCCHH------------
Confidence            3467889998 9999999999999986  8999999988777766666532  11 122221 22321            


Q ss_pred             HhcCCCccEEEECcccCC
Q 042455           98 TARALPLNILINKAGICG  115 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~  115 (138)
                        .+..-|++|..+|..+
T Consensus        86 --~~~daDiVIitaG~p~  101 (330)
T 3ldh_A           86 --VSAGSKLVVITAGARQ  101 (330)
T ss_dssp             --SCSSCSEEEECCSCCC
T ss_pred             --HhCCCCEEEEeCCCCC
Confidence              2346799999999864

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.61  E-value=0.0095  Score=42.75  Aligned_cols=80  Identities=16%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ..+++++|+|+ |++|...++.+...|+. ++++++++++.+.. +++     +....   .|..+.+ ....+..+ ..
T Consensus       159 ~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-~~l-----Ga~~~---i~~~~~~-~~~~~~~~-~~  226 (346)
T 4a2c_A          159 CENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALA-KSF-----GAMQT---FNSSEMS-APQMQSVL-RE  226 (346)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCSEE---EETTTSC-HHHHHHHH-GG
T ss_pred             CCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHH-HHc-----CCeEE---EeCCCCC-HHHHHHhh-cc
Confidence            36889999987 89999999888888985 56778877664432 222     33222   2333222 12222322 23


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      ....|+++.++|.
T Consensus       227 ~~g~d~v~d~~G~  239 (346)
T 4a2c_A          227 LRFNQLILETAGV  239 (346)
T ss_dssp             GCSSEEEEECSCS
T ss_pred             cCCcccccccccc
Confidence            3467888888773

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.59  E-value=0.056  Score=38.65  Aligned_cols=77  Identities=18%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCC--CCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNP--AAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+++.|+|+ |.+|.+++..++..|.  +|+++++++++++....++....+  +..+.... |  +           .+
T Consensus         6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~-----------~~   70 (316)
T 1ldn_A            6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D-----------YD   70 (316)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C-----------GG
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c-----------HH
Confidence            357899998 9999999999988774  899999998766655555544322  11222222 2  1           12


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      .+..-|++|.++|+..
T Consensus        71 al~~aDvViia~~~~~   86 (316)
T 1ldn_A           71 DCRDADLVVICAGANQ   86 (316)
T ss_dssp             GTTTCSEEEECCSCCC
T ss_pred             HhCCCCEEEEcCCCCC
Confidence            2346799999999864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.59  E-value=0.0049  Score=43.63  Aligned_cols=40  Identities=28%  Similarity=0.366  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .++.||.++|.|.++-+|+.+++.|...|+.|.++.+...
T Consensus       157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~  196 (285)
T 3l07_A          157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT  196 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch
Confidence            4689999999999888999999999999999988876543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.57  E-value=0.0069  Score=42.91  Aligned_cols=44  Identities=32%  Similarity=0.404  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .++.||+++|.|++.-+|+.+++.|+..|++|.++.+....+.+
T Consensus       155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~  198 (288)
T 1b0a_A          155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRH  198 (288)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHH
Confidence            46899999999999889999999999999999999876654444

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.0078  Score=49.58  Aligned_cols=63  Identities=19%  Similarity=0.305  Sum_probs=50.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+.+++|.|+ ||+|.++++.|+..|. ++.+++.+                   ..+++.+...+++..|..++..+.
T Consensus        25 L~~s~VlIvG~-GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~  103 (1015)
T 3cmm_A           25 MQTSNVLILGL-KGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLD  103 (1015)
T ss_dssp             HTTCEEEEECC-SHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECC
T ss_pred             HhcCEEEEECC-ChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEec
Confidence            57889999997 7999999999999998 89998764                   245677778888888777777766


Q ss_pred             ecCC
Q 042455           82 LDLS   85 (138)
Q Consensus        82 ~D~~   85 (138)
                      .+++
T Consensus       104 ~~l~  107 (1015)
T 3cmm_A          104 SLDD  107 (1015)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5553

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.54  E-value=0.0014  Score=47.10  Aligned_cols=88  Identities=14%  Similarity=0.089  Sum_probs=55.7

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH--------HHHHHHHhcCCCCeeEEEEecCCCHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR--------DVKVAIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~--------~~~~~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      ..++.||++.|.|. |.||.++|+.+...|++|+..+|+....+        ....++..   ...+..+.+.++..  .
T Consensus       134 ~~~l~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~---~aDiV~l~~Plt~~--t  207 (315)
T 3pp8_A          134 EYTREEFSVGIMGA-GVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLN---QTRVLINLLPNTAQ--T  207 (315)
T ss_dssp             CCCSTTCCEEEECC-SHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHH---TCSEEEECCCCCGG--G
T ss_pred             CCCcCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHh---hCCEEEEecCCchh--h
Confidence            35688999999988 79999999999999999999998764221        12223322   35677777766532  2


Q ss_pred             HHHH-HHHHhcCCCccEEEECccc
Q 042455           91 RKFA-SDFTARALPLNILINKAGI  113 (138)
Q Consensus        91 ~~~~-~~~~~~~~~id~lv~~ag~  113 (138)
                      ..++ ++....+ +.+.++.|+|.
T Consensus       208 ~~li~~~~l~~m-k~gailIN~aR  230 (315)
T 3pp8_A          208 VGIINSELLDQL-PDGAYVLNLAR  230 (315)
T ss_dssp             TTCBSHHHHTTS-CTTEEEEECSC
T ss_pred             hhhccHHHHhhC-CCCCEEEECCC
Confidence            2223 2223333 34555555553

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.53  E-value=0.012  Score=42.17  Aligned_cols=40  Identities=25%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGR   62 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~   62 (138)
                      ..|.+++|+|+ +++|...+..+... |++|+++++++++.+
T Consensus       162 ~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~  202 (348)
T 4eez_A          162 KPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLN  202 (348)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred             CCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhh
Confidence            35889999987 78888777777765 679999999887654

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.51  E-value=0.009  Score=43.04  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVK   65 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~   65 (138)
                      +++.|+|+ |.+|..++..|+..|. +|.+.+++++.++...
T Consensus        15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~   55 (328)
T 2hjr_A           15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKA   55 (328)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            57888998 8999999999999998 9999999988776533

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=96.50  E-value=0.034  Score=39.86  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=49.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC-C--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           26 TAIVTGASSGIGAETTRVLALR-G--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~-g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++.|+||+|.+|.+++..|..+ +  .+++++++++ ..+-...++.......++..+.. -.+.+.           +.
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~-----------~~   68 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSG-EDATPA-----------LE   68 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECS-SCCHHH-----------HT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecC-CCcHHH-----------hC
Confidence            4788999999999999999875 5  3799999987 44444555543311112222211 012222           13


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      ..|++|..+|..+
T Consensus        69 ~aDivii~ag~~r   81 (312)
T 3hhp_A           69 GADVVLISAGVAR   81 (312)
T ss_dssp             TCSEEEECCSCSC
T ss_pred             CCCEEEEeCCCCC
Confidence            5799999999864

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.49  E-value=0.0028  Score=45.54  Aligned_cols=72  Identities=15%  Similarity=0.129  Sum_probs=52.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .+.++|.|+ |.+|..+++.|.++|. |++++++++..+ +..        ..+.++.+|.++++.++++      ...+
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a------~i~~  177 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKA------NVRG  177 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHT------CSTT
T ss_pred             cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhc------Chhh
Confidence            457888996 8999999999999999 999999887765 321        2256788888888776544      1234


Q ss_pred             ccEEEECcc
Q 042455          104 LNILINKAG  112 (138)
Q Consensus       104 id~lv~~ag  112 (138)
                      .|.+|...+
T Consensus       178 a~~vi~~~~  186 (336)
T 1lnq_A          178 ARAVIVDLE  186 (336)
T ss_dssp             EEEEEECCS
T ss_pred             ccEEEEcCC
Confidence            566666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	3e-19
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	2e-18
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	4e-17
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	7e-17
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	9e-17
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	2e-16
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	3e-16
d1zmta1	252	c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag	3e-16
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	3e-16
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	3e-16
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	5e-16
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	8e-16
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	8e-16
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	9e-16
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	1e-15
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	3e-15
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	4e-15
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	5e-15
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	5e-15
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	1e-14
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	1e-14
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	2e-14
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	3e-14
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	4e-14
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	6e-14
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	1e-13
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	1e-13
d1x1ta1	260	c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge	1e-13
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	2e-13
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	3e-13
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	4e-13
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	5e-13
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	9e-13
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	9e-13
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	1e-12
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	1e-12
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	2e-12
d1mxha_	266	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	2e-12
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	2e-12
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	2e-12
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	4e-12
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	4e-12
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	6e-12
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	1e-10
d2bd0a1	240	c.2.1.2 (A:2-241) Bacterial sepiapterin reductase	1e-10
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	5e-10
d1gz6a_	302	c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do	6e-10
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	2e-09
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	2e-09
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	3e-09
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	5e-09
d1fjha_	257	c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase	5e-09
d1ulua_	256	c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph	8e-09
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	1e-08
d1e7wa_	284	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-08
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	4e-08
d1uaya_	241	c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena	5e-08
d1snya_	248	c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly	8e-08
d1edoa_	244	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	8e-08
d1d7oa_	297	c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B	4e-07
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	5e-07
d2pd4a1	274	c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte	6e-07
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	1e-06
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	4e-06
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	4e-06
d1qsga_	258	c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli	8e-06
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	8e-05
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	1e-04
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	2e-04
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	2e-04
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	3e-04
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	3e-04
d1uh5a_	329	c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite	5e-04
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	5e-04
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	0.001
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	0.001
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	0.002
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	0.002

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 3e-19
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTGA+ GIG      L L+G  V + D N+ AG   K A+  Q    K   ++ D
Sbjct: 3   GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 62

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY 138
           ++    +R            L+IL+N AG+       ++ N E     N +    
Sbjct: 63  VADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVIS 111

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (188), Expect = 2e-18
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 2/115 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGAS GIGA   R L  +G+ V+   R +    ++            +     DLS
Sbjct: 12  LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 71

Query: 86  SLASVRKFASDFTARALPLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAFY 138
           +   +    S   ++   ++I IN AG+    T    S    +  F  N L    
Sbjct: 72  NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSI 126

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score = 72.6 bits (178), Expect = 4e-17
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               A++TG ++GIG       A+ G  + +AD   A     +    ++N   +V  ++ 
Sbjct: 4   KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP----EAEAAIRNLGRRVLTVKC 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC-GTPFM-LSKDNIELHFATNHLGAFY 138
           D+S    V  F     +     +IL+N AGI    PF  L+ +  +  F  N    F 
Sbjct: 60  DVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFL 117

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.3 bits (177), Expect = 7e-17
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVME 81
           A   AI+TG+S+GIG  T  + A  G  V +  R+     + +  I+        V+ + 
Sbjct: 4   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 63

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGIC------GTPFMLSKDNIELHFATNHLG 135
            D+++ A   +  S    +   L+IL+N AG         T    S ++ +     N   
Sbjct: 64  ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 123

Query: 136 AFY 138
              
Sbjct: 124 VIA 126

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 9e-17
 Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
              G   ++TGA  GIG  T    A     +++ D N     +       +   AKV   
Sbjct: 4   SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGLGAKVHTF 61

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKA--GICGTPFMLSKDNIELHFATNHLGAFY 138
            +D S+   +   A    A    ++IL+N A        F      IE  F  N L  F+
Sbjct: 62  VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFW 121

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 71.2 bits (174), Expect = 2e-16
 Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 17  TQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAK 76
           +Q       T +VTG + GIG       A  G  +    RN     +       Q    +
Sbjct: 1   SQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW--QKKGFQ 58

Query: 77  VDVMELDLSSLASVRKFASDFTARAL-PLNILINKAGICG-TPFM-LSKDNIELHFATNH 133
           V     D S      K     ++     L+ILIN  G     P +  + ++   H +TN 
Sbjct: 59  VTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNL 118

Query: 134 LGAFY 138
             A++
Sbjct: 119 ESAYH 123

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 70.5 bits (172), Expect = 3e-16
 Identities = 25/92 (27%), Positives = 39/92 (42%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
                ++TG  SG+G  T   LA  G  + + D +       K A++   P A+V     
Sbjct: 3   TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 62

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC 114
           D+S  A V  + +  T R   ++   N AGI 
Sbjct: 63  DVSDEAQVEAYVTATTERFGRIDGFFNNAGIE 94

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 70.4 bits (172), Expect = 3e-16
 Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 11/116 (9%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           TAIVT      G  +   L+  G  V   D +     +++        A      +L   
Sbjct: 2   TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE--------AFAETYPQLKPM 53

Query: 86  SLASVRKFASDFTARALPLNILINKAGICG--TPFM-LSKDNIELHFATNHLGAFY 138
           S     +     T+    +++L++         P    + ++         +  F 
Sbjct: 54  SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA 109

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.3 bits (171), Expect = 3e-16
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 26  TAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           + +VTGA+ GIG    + L       H+I   R++    ++K         ++V V+ L 
Sbjct: 5   SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK-----SIKDSRVHVLPLT 59

Query: 84  LSSLASVRKFASDFTAR--ALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAFY 138
           ++   S+  F S       +  L++LIN AG+    GT    ++  I      N      
Sbjct: 60  VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.1 bits (171), Expect = 3e-16
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D  G  A+VTG S G+G    + LA  G  V++A RN+    +    +  +    +    
Sbjct: 2   DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAF 60

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGI 113
             D+S+   V+K       +   L+ ++N AGI
Sbjct: 61  RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 93

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.1 bits (171), Expect = 5e-16
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVME 81
           +G + I+TG+S+GIG     + A  G  V +  RN     + K  I+    PA K++ + 
Sbjct: 3   SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 62

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICGTPFML----SKDNIELHFATNHLGAF 137
            D++  +      +   A+   ++IL+N AG              +  +  F  N     
Sbjct: 63  ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 122

Query: 138 Y 138
            
Sbjct: 123 E 123

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score = 69.1 bits (169), Expect = 8e-16
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 10/118 (8%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG   +VTG + GIG    +  A  G  V + D         +        A      ++
Sbjct: 4   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE--------AIGGAFFQV 55

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           DL       +F  +       +++L+N A I   G+   +           N     +
Sbjct: 56  DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMH 113

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.3 bits (169), Expect = 8e-16
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVME 81
           +  T I+TG+S+GIG  T  + A  G +V +  R+     + +  I+       +V+ + 
Sbjct: 4   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 63

Query: 82  LDLSSLASVRKFASDFTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLG 135
            D+++     +  +    +   +++L+N AG         T      D        N   
Sbjct: 64  ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 123

Query: 136 AFY 138
              
Sbjct: 124 VIE 126

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 9e-16
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPA---AKVDV 79
            G  AIVTG ++GIG    + L   G +V++A R +   +     +    P    A+V  
Sbjct: 11  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 70

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI--CGTPFMLSKDNIELHFATNHLGAF 137
           ++ ++ +   V             +N L+N  G         +S         TN  G F
Sbjct: 71  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTF 130

Query: 138 Y 138
           Y
Sbjct: 131 Y 131

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 68.5 bits (167), Expect = 1e-15
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTG +SG+G E  ++L   G  V  +D N AAG+ +   +       +   +  
Sbjct: 5   QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRH 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           D+SS A      +    R   LN+L+N AGI   G       ++       N    F 
Sbjct: 60  DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFI 117

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 67.4 bits (164), Expect = 3e-15
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  AI+TGA +GIG E     A  G  V+++D N  A   V   I  Q    +      
Sbjct: 10  DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI--QQLGGQAFACRC 67

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-TPFMLSKDNIELHF 129
           D++S   +   A    ++   ++IL+N AG  G  PF +   +    +
Sbjct: 68  DITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAY 115

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 4e-15
 Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 27  AIVTGASSGIGAETTRVLA-LRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
           A+VTG + GIG    R L  L    V++  R++  G+     +  Q         +LD+ 
Sbjct: 6   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL--QAEGLSPRFHQLDID 63

Query: 86  SLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
            L S+R            L++L+N AGI              E+   TN  G   
Sbjct: 64  DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD 118

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 67.3 bits (164), Expect = 5e-15
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           +  G TA+VTG S GIG      LA  G  V    RN     D       ++   KV+  
Sbjct: 5   NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW--RSKGFKVEAS 62

Query: 81  ELDLSSLASVRKFASDFTARA-LPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAF 137
             DLSS +  ++  +         LNIL+N AGI         + ++  L  + N   A+
Sbjct: 63  VCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAY 122

Query: 138 Y 138
           +
Sbjct: 123 H 123

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 5e-15
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 9/119 (7%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG   +VTG   GIGA   R     G  V++ D++ + GR ++  +           +  
Sbjct: 5   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILC 58

Query: 83  DLSSLASVRKFASDFTARALPLNILINKA---GICGTPFMLSKDNIELHFATNHLGAFY 138
           D++    V+   S+   R   L+ ++N A        P   S          N LG + 
Sbjct: 59  DVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYT 117

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score = 66.3 bits (161), Expect = 1e-14
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           I     T IVTG + GIG   TR +A  G +V +  R+ A   +V   +  +    K   
Sbjct: 5   ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG-KEFGVKTKA 63

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGI-CGTPFM-LSKDNIELHFATNHLGAF 137
            + D+S+   V K      A   P++ LI  AG+    P   L+ ++    +  N  G F
Sbjct: 64  YQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVF 123

Query: 138 Y 138
            
Sbjct: 124 N 124

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 66.2 bits (161), Expect = 1e-14
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
               AI+TG + GIG  T ++    G  V++AD     G+ V   I        +  +  
Sbjct: 5   QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVHC 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGT----PFMLSKDNIELHFATNHLGAFY 138
           D++    VR       A+   L+I+    G+  T          ++ +     N  GAF 
Sbjct: 62  DVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 121

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.5 bits (159), Expect = 2e-14
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+V+G + G+GA   R +   G  V+  D     G+ +   +     A     + L
Sbjct: 5   TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHL 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFML--SKDNIELHFATNHLGAFY 138
           D++  A  +            L++L+N AGI     +   +    +     N  G F 
Sbjct: 60  DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFL 117

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 65.0 bits (158), Expect = 3e-14
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  AI+TG + GIG          G  V++  R+   G     ++       ++   + 
Sbjct: 5   DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV---GTPDQIQFFQH 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFM--LSKDNIELHFATNHLGAFY 138
           D S      K          P++ L+N AGI     +   +        A N  G F+
Sbjct: 62  DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFF 119

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score = 64.7 bits (157), Expect = 4e-14
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           +D      I   A  GIG +T+R L  R +   +    +     +   +   NP   +  
Sbjct: 1   MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA-ELKAINPKVNITF 59

Query: 80  MELDLS-SLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY 138
              D++  +A  +K       +   ++ILIN AGI           IE   A N  G   
Sbjct: 60  HTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVN 113

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 64.2 bits (156), Expect = 6e-14
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D +G T I+TG + G+GAE  R     G  V++AD     G      +            
Sbjct: 2   DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQ 56

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFM 119
            LD++     ++  +        ++ L+N AGI    F+
Sbjct: 57  HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFL 95

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (154), Expect = 1e-13
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 20  IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
           ++ +G+ A+VTGA  GIG +T + L   G  V+   R  +    +            ++ 
Sbjct: 1   LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEP 54

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAF 137
           + +DL    +  K          P+++L+N A +        ++K+  +  F+ N    F
Sbjct: 55  VCVDLGDWDATEKALGGIG----PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVF 110

Query: 138 Y 138
            
Sbjct: 111 Q 111

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 1e-13
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A +TG  +G+G   T +L+  G   ++A R M   +     I  Q    KV  ++ 
Sbjct: 24  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAIQC 82

Query: 83  DLSSLASVRKFASDFTARALPLNILINKA--GICGTPFMLSKDNIELHFATNHLGAFY 138
           D+     V+   S+    A   NI+IN A          LS +  +        G  +
Sbjct: 83  DVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 140

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

 Score = 63.3 bits (153), Expect = 1e-13
 Identities = 28/91 (30%), Positives = 43/91 (47%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
           G  A+VTG++SGIG      LA +G  +++     AA  +   A +      KV     D
Sbjct: 4   GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGAD 63

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGIC 114
           LS   +VR    +   +   ++IL+N AGI 
Sbjct: 64  LSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ 94

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 62.9 bits (152), Expect = 2e-13
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G TA++TG++ GIG          G  V +AD N+ A R     I           + L
Sbjct: 4   DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIAL 58

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           D++  AS+ +  ++   R   ++IL+N A +        +++++ +  FA N  G  +
Sbjct: 59  DVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLF 116

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 62.5 bits (151), Expect = 3e-13
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGA  GIG      L   G  V +AD N A  + V   I           +++D+S
Sbjct: 3   VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI--NQAGGHAVAVKVDVS 60

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNH 133
               V              ++++N AG+  +  + S     +    N 
Sbjct: 61  DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNI 108

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 4e-13
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG   +VTGA  GIG  T + L   G  V+   R  A    +            ++ + +
Sbjct: 6   AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCV 59

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           DL    +  +          P+++L+N A +        ++K+  +  F  N      
Sbjct: 60  DLGDWEATERALGSVG----PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQ 113

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (149), Expect = 5e-13
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 23  AGVTAIVTGASSGIGAETTRVLA---LRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
                ++TGAS G G      LA     G  ++++ R+ +  R +K  +  Q P  KV +
Sbjct: 5   GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64

Query: 80  MELDLSSLASVRK----FASDFTARALPLNILINKAGICGTPFM-----LSKDNIELHFA 130
              DL + A V++             L   +LIN A   G              +  ++A
Sbjct: 65  AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124

Query: 131 TNH 133
            N 
Sbjct: 125 LNL 127

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 60.9 bits (147), Expect = 9e-13
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           +G T +VTGA+SGIG     + A  G  ++  DR      +   A+      A+   +  
Sbjct: 4   SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVA 58

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNH 133
           D+S   +V    ++       L+ + + AG+  +    +            
Sbjct: 59  DVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRV 109

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 61.2 bits (148), Expect = 9e-13
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 12/123 (9%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G   ++TG +SG+G          G  V + D++     +++           V  +  
Sbjct: 4   KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVG 58

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICG-------TPFMLSKDNIELHFATNHLG 135
           D+ SL   ++ AS   AR   ++ LI  AGI          P        +  F  N  G
Sbjct: 59  DVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKG 118

Query: 136 AFY 138
             +
Sbjct: 119 YIH 121

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 60.8 bits (147), Expect = 1e-12
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
                ++TGA+ GIG  T  + A  G  ++  D      R+   A+           + +
Sbjct: 4   KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVM 56

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAG--ICGTPFMLSKDNIELHFATNHLGAFY 138
           D++  ASV +  ++  A    L+ +++ AG       + +  ++ EL    N  G+F 
Sbjct: 57  DVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFL 114

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 60.5 bits (146), Expect = 1e-12
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
              A+VTGA+SGIG E  R L   G+ V +  R     R     +  +    + D    D
Sbjct: 2   SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL--REAGVEADGRTCD 59

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGIC 114
           + S+  +    +    R  P+++L+N AG  
Sbjct: 60  VRSVPEIEALVAAVVERYGPVDVLVNNAGRP 90

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 3/118 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G  A+VTGA  GIG E    L  RG  VI+   N     +  VA + +N  +    ++ 
Sbjct: 17  EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-GSDAACVKA 75

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELH--FATNHLGAFY 138
           ++  +  + +   +       L+I+ + +G+     +      E    F  N  G F+
Sbjct: 76  NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF 133

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 60.3 bits (145), Expect = 2e-12
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A++TG +  IG      L  +G  V++  R+        VA +    A    + + DLS
Sbjct: 3   AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLS 62

Query: 86  SLASVRKFASDFTARAL----PLNILINKAGI 113
             +S+     D    +       ++L+N A  
Sbjct: 63  LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASA 94

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 59.8 bits (144), Expect = 2e-12
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           AG  A+ TGA  GIG      L  RG  V++   + +   + +V   ++   A+   ++ 
Sbjct: 5   AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE-EVVAELKKLGAQGVAIQA 63

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           D+S  + V        +    L+ +++ +G+        ++++  +  F  N  G F+
Sbjct: 64  DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFF 121

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.7 bits (144), Expect = 2e-12
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
              + +VTG + GIG    + LA  G  V +  R   A                +  +E+
Sbjct: 6   VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA-------------PKGLFGVEV 52

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNH 133
           D++   +V +  +       P+ +L++ AG+    F++     +     N 
Sbjct: 53  DVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINA 103

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 59.4 bits (143), Expect = 4e-12
 Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
              G TA+VTG S GIG      LA  G  V    RN     +       +    +  V 
Sbjct: 3   SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSV- 61

Query: 81  ELDLSSLASVRKFASDFTARAL-PLNILINKAGICGTPFM--LSKDNIELHFATNHLGAF 137
             DL S     K            LNIL+N AG+         ++ +  +   TN   A+
Sbjct: 62  -CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY 120

Query: 138 Y 138
           +
Sbjct: 121 H 121

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 59.4 bits (143), Expect = 4e-12
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G   +VTGA   IG  T   LA  G  + + D N  A    + ++  +    +      
Sbjct: 4   NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV--REKGVEARSYVC 61

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIE 126
           D++S  +V             ++ L N AG  G    +     +
Sbjct: 62  DVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSD 105

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score = 59.0 bits (142), Expect = 6e-12
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 21  DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
           D  G   ++TG+S+G+G       A     V++  R+     +  V   ++    +   +
Sbjct: 4   DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEAN-SVLEEIKKVGGEAIAV 62

Query: 81  ELDLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
           + D++  + V             L+++IN AG+    +   +S  +      TN  GAF 
Sbjct: 63  KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFL 122

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            A+VTGA  GIG E  ++LA    HVI   R   +   V   I  ++   +      D+S
Sbjct: 12  VALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI--KSFGYESSGYAGDVS 69

Query: 86  SLASVRKFASDFTARALPLNILINKAGICGTPFM 119
               + +  +        ++IL+N AGI      
Sbjct: 70  KKEEISEVINKILTEHKNVDILVNNAGITRDNLF 103

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

 Score = 55.1 bits (132), Expect = 1e-10
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 27  AIVTGASSGIGAETTRVLALRGVH-------VIMADRNMAAGRDVKVAIVMQNPAAKVDV 79
            ++TGA  GIG       A    H       ++++ R  A    + +    +   A  D 
Sbjct: 4   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC--RAEGALTDT 61

Query: 80  MELDLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAF 137
           +  D+S +A VR+  +    R   ++ L+N AG+   G    L++++ +    TN  G F
Sbjct: 62  ITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF 121

Query: 138 Y 138
           +
Sbjct: 122 F 122

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 53.2 bits (127), Expect = 5e-10
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVM 80
          +  G  A+VTGAS GIG      LA RG  VI    +    + +   +        ++V 
Sbjct: 1  NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVT 60

Query: 81 ELD 83
          +  
Sbjct: 61 DPA 63

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.4 bits (128), Expect = 6e-10
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN----MAAGRDVKVAIVMQNPAAKVD 78
            G   +VTGA  G+G       A RG  V++ D                 V++    +  
Sbjct: 6   DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG 65

Query: 79  VMELDLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGA 136
               +  S+ +  K           +++++N AGI    +   +S ++ ++    +  G+
Sbjct: 66  KAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGS 125

Query: 137 FY 138
           F 
Sbjct: 126 FQ 127

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 2e-09
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G   IVTGAS GIG E    LA  G HV++  R+    + V    + +  AA    +  
Sbjct: 13  QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL-ELGAASAHYIAG 71

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
            +  +    +F +        L++LI           F     ++      N L    
Sbjct: 72  TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVV 129

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 19/117 (16%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
               +V  AS GIG     VL+  G  V +  RN    +      V              
Sbjct: 4   DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-------------- 49

Query: 84  LSSLASVRKFASDFTARALPLNILINKA--GICGTPFMLSKDNIELHFATNHLGAFY 138
              +  +RK       +   ++IL+  A     G    L+ ++ +    +  L    
Sbjct: 50  ---VCDLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIK 103

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.0 bits (121), Expect = 3e-09
 Identities = 13/118 (11%), Positives = 27/118 (22%), Gaps = 13/118 (11%)

Query: 24  GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
               +V G    +G+   +    R   V   D          V          V + +  
Sbjct: 2   ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVI---------VKMTDSF 52

Query: 84  LSSLASVRKFASDFTARALPLNILINKAGICGTPFML---SKDNIELHFATNHLGAFY 138
                 V             ++ ++  AG              N +L +  +   +  
Sbjct: 53  TEQADQVTAEVGK-LLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTI 109

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 5e-09
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 23  AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
            G   I+T A+ GIG       A  G  VI  D N +  ++++     + P  +  V++ 
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-----KYPGIQTRVLD- 58

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC--GTPFMLSKDNIELHFATNHLGAFY 138
                 + +K    F      L++L N AG    GT     + + +     N    + 
Sbjct: 59  -----VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYL 111

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 50.7 bits (120), Expect = 5e-09
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 20/89 (22%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            +++G ++GIGA T +VL   G  ++  D   A                    +  DLS+
Sbjct: 4   IVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADLST 44

Query: 87  LASVRKFASDFTARAL-PLNILINKAGIC 114
               ++  +D  A+    ++ L+  AG+ 
Sbjct: 45  AEGRKQAIADVLAKCSKGMDGLVLCAGLG 73

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.2 bits (119), Expect = 8e-09
 Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 20  IDAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV 77
           +D +G  A+V G ++   +G      L   G  V ++ +      + +        A   
Sbjct: 4   VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLF 63

Query: 78  DVMELDLSSLASVRKFASDFTARALPLNILINKAGICGTPFM 119
                       +    +        L+ L++         M
Sbjct: 64  RADVTQ---DEELDALFAGVKEAFGGLDYLVHAIAFAPREAM 102

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI 68
          G+ A++TG +SG+G  T   L  +G   ++ D   + G      +
Sbjct: 5  GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL 49

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

 Score = 49.7 bits (117), Expect = 1e-08
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 17/104 (16%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV----------------- 69
           A+VTGA+  +G      L   G  V +     AA  +   A +                 
Sbjct: 5   ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 64

Query: 70  MQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI 113
           +             ++      +  +         ++L+N A  
Sbjct: 65  VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASS 108

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 4e-08
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNM----AAGRDVKVAIVMQNPAAKVDVMEL 82
            ++TG SSGIG      LA            +      GR  + A  +  P   ++ ++L
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY 138
           D+    SV       T   + + +     G+ G    L +D +      N +G   
Sbjct: 65  DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVR 120

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 47.5 bits (112), Expect = 5e-08
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA 67
          +A+VTG +SG+G      L  RG  V++ D        + V 
Sbjct: 3  SALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVE 44

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.4 bits (111), Expect = 8e-08
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 26  TAIVTGASSGIGAETTRVL---ALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMEL 82
           + ++TG + G+G    + L        H+    RN    ++++  +   +    +  ++L
Sbjct: 4   SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKNHSNIHILEIDL 62

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGIC---GTPFMLSKDNIELHFATNHLGAFY 138
                        +   +   LN+L N AGI         +    +     TN +    
Sbjct: 63  RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIM 121

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 47.0 bits (111), Expect = 8e-08
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 1/107 (0%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            +VTGAS GIG      L   G  V++     A   + +V+  ++    +      D+S 
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAE-EVSKQIEAYGGQAITFGGDVSK 62

Query: 87  LASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNH 133
            A V             +++++N AGI     ++     +     + 
Sbjct: 63  EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDL 109

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 45.5 bits (106), Expect = 4e-07
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 20 IDAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV 77
          ID  G  A + G +   G G    + LA  G  +++     A           +   ++V
Sbjct: 4  IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRV 63

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (105), Expect = 5e-07
 Identities = 14/115 (12%), Positives = 30/115 (26%), Gaps = 13/115 (11%)

Query: 27  AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
            IV G    +G+         G  V+  D +  A       I++       +  +  L  
Sbjct: 5   VIVYGGKGALGSAILEFFKKNGYTVLNIDLS--ANDQADSNILVDGNKNWTEQEQSILEQ 62

Query: 87  LASVRKFASDFTARALPLNILIN---KAGICGTPFMLSKDNIELHFATNHLGAFY 138
            AS  + +         ++ +                   N +L    +   +  
Sbjct: 63  TASSLQGS--------QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 109

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

 Score = 44.7 bits (104), Expect = 6e-07
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 23 AGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVK 65
           G   ++ G ++   I     +    +G  +     N +  + V+
Sbjct: 4  KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVR 48

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 44.0 bits (102), Expect = 1e-06
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 23 AGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNMAA 60
           G   +V+G    S I     RV   +G  +++   +   
Sbjct: 5  DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR 44

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 26 TAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAI 68
          T +VTG + G+G +  R LA RG  H+++  R+          +
Sbjct: 11 TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELV 54

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           +VTG S  IG+ T   L   G  VI+ D N+   +   + ++ +        +E D+ + 
Sbjct: 4   LVTGGSGYIGSHTCVQLLQNGHDVIILD-NLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62

Query: 88  ASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
           A + +   D       ++ +I+ AG+       S      ++  N  G  
Sbjct: 63  ALMTEILHDH-----AIDTVIHFAGLKAVG--ESVQKPLEYYDNNVNGTL 105

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 8e-06
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 23 AGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPA 74
          +G   +VTG +S   I     + +   G  +    +N      V+         
Sbjct: 4  SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSD 57

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 38.6 bits (88), Expect = 8e-05
 Identities = 9/56 (16%), Positives = 17/56 (30%)

Query: 29 VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
          + G +  IG          G    +  R        KV +++        ++E  L
Sbjct: 8  IVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASL 63

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 28  IVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSL 87
           ++TG    +G+        +G+ +I+ D     G    +  +        + +  D+ + 
Sbjct: 4   LITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLG--NFEFVHGDIRNK 61

Query: 88  ASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
             V +  + +       +   + AG        S DN  + F  N  G  
Sbjct: 62  NDVTRLITKYMP-----DSCFHLAGQVAMTT--SIDNPCMDFEINVGGTL 104

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELD 83
          G   +VTGA+  + +     L   G  V    R+ +   +++     + P      +  D
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVED 70

Query: 84 LS 85
          + 
Sbjct: 71 ML 72

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
          +A+VTG +   GA   ++L  +G  V       ++    ++  +       +   + D++
Sbjct: 2  SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEG--DIQYEDGDMA 59

Query: 86 SLASVRKF 93
             SV++ 
Sbjct: 60 DACSVQRA 67

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 1/52 (1%)

Query: 26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKV 77
           A++ G    +G      LA  G  +++  R                  A +
Sbjct: 3  VALLGGTG-NLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASI 53

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
            +VTG +  IG+ T   L   G   ++AD N++      VA +       +   E+DL 
Sbjct: 3  IVLVTGGAGYIGSHTVVELIENGYDCVVAD-NLSNSTYDSVARLEVLTKHHIPFYEVDLC 61

Query: 86 SLASVRKFASDF 97
              + K   ++
Sbjct: 62 DRKGLEKVFKEY 73

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 36.4 bits (82), Expect = 5e-04
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 27  AIVTGA--SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL 84
             + G   ++G G    + L+ R V +I           +K     +     +   +  +
Sbjct: 5   CFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKM 64

Query: 85  SSLASVRKFASDFTARALPLNILINKA 111
           + L  +   AS  TA  +      NK 
Sbjct: 65  NILDMLPFDASFDTANDIDEETKNNKR 91

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 28  IVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS 86
           ++TG +  IG+   R +       V+  D+   AG    ++ + ++   + +    D+  
Sbjct: 4   LITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESN--RYNFEHADICD 61

Query: 87  LASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
            A + +    +       + +++ A         S         TN +G +
Sbjct: 62  SAEITRIFEQY-----QPDAVMHLAAESHVD--RSITGPAAFIETNIVGTY 105

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS 85
          T  V GA+   GA   RV A  G HV     ++      ++          V + +  L 
Sbjct: 5  TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ-----AIPNVTLFQGPLL 59

Query: 86 SLASVRKFA 94
          +   +    
Sbjct: 60 NNVPLMDTL 68

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAK----VDVME 81
           A++TG +   G+  T  L  +G  V    R  +     ++  +  +P       + +  
Sbjct: 3  IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62

Query: 82 LDLSSLASVRKF 93
           DL+  +S+R++
Sbjct: 63 ADLTDASSLRRW 74

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 26  TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAA---KVDVMEL 82
            A++TG +   G+     L  +G  V    R  ++    +V  + Q+P     K  +   
Sbjct: 3   VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62

Query: 83  DLSSLASVRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF 137
           DLS  +++ +   +                   +   +S ++ E     + +G  
Sbjct: 63  DLSDTSNLTRILREV-------QPDEVYNLGAMSHVAVSFESPEYTADVDAMGTL 110

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 29 VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD-VKVAIVMQNPAAKVDVMELDL 84
          + GA+  IG    +     G    +  R   A  +  K  ++    A+  +++   +
Sbjct: 8  LIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.96
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.96
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.96
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.96
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.96
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.96
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.96
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.96
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.96
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.96
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.96
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.96
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.96
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.96
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.96
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.96
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.96
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.96
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.96
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.96
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.95
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.95
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.95
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.95
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.95
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.95
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.95
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.95
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.95
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.95
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.94
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.94
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.94
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.94
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.94
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.94
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.94
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.94
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.94
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.93
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.93
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.93
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.93
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.93
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.93
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.93
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.93
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.92
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.92
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.89
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.88
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.87
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.86
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.86
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.86
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.85
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.85
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.85
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.81
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.81
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.78
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.78
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.77
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.77
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.77
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.59
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.53
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.51
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.48
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.45
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.44
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.42
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.4
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.37
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.35
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.29
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.28
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.27
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.25
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.23
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.12
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.09
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.07
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.05
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.02
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.0
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.98
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.94
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.93
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.88
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	98.86
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.84
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.81
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.8
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.6
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.57
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.56
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.45
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.37
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.37
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.34
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.28
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.25
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.24
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	98.22
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.19
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	98.16
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.1
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.08
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.07
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.03
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	98.03
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.98
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.96
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.9
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.86
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.84
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.8
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.75
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.71
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.69
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.66
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.64
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.64
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.63
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.62
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.61
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.61
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.57
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.57
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.56
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.52
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.51
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.47
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.44
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.42
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.4
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.39
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.38
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.33
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.32
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.29
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.28
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.27
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.26
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.22
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.21
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.2
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.2
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.19
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.18
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.14
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.12
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.12
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.11
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	97.07
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.01
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.98
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.97
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.91
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.91
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.89
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.85
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.83
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.79
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.78
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.77
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.74
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.74
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.71
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.69
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.69
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.66
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.64
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.63
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.61
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.6
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.6
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.58
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.55
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.55
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.52
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.45
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.43
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.43
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.35
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.34
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.31
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.28
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.28
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.26
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	96.19
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.18
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.1
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.07
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.01
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.99
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.98
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.96
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.96
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.91
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.85
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.84
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	95.82
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.82
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	95.75
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.73
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.65
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.59
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.58
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.51
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.46
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	95.35
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.34
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	95.34
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.31
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	95.31
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	95.27
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.23
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.21
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.2
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.18
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.03
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.02
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.0
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.94
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.93
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	94.92
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.9
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.85
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	94.78
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.77
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.74
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.71
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.67
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	94.59
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.53
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	94.49
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.45
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	94.41
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.4
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.34
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	94.33
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.32
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.17
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.07
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.06
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	93.92
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.91
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	93.88
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.7
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	93.67
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.61
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.57
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.56
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.48
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	93.46
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.3
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.13
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	93.11
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.05
d2eyqa5	211	Transcription-repair coupling factor, TRCF {Escher	92.65
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	92.64
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.6
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	92.59
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.48
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	92.46
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	92.34
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	92.28
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	92.27
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	92.24
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.24
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	92.23
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.09
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	92.04
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.03
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.85
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.85
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.78
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	91.73
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	91.72
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	91.55
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	91.51
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.39
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.36
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.11
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.05
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	91.05
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.03
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	90.78
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.65
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.6
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.57
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	90.47
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.4
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	90.22
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.18
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	89.89
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.79
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	89.66
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	89.55
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	89.43
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	89.26
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.05
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.02
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	88.99
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.92
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	88.81
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.69
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	88.52
d1qkia1	203	Glucose 6-phosphate dehydrogenase, N-terminal doma	88.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	88.43
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	88.4
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	88.33
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	88.06
d1kl7a_	511	Threonine synthase {Baker's yeast (Saccharomyces c	87.97
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.97
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.9
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	87.86
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	87.74
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	87.72
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	87.65
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	87.55
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.5
d1vb3a1	428	Threonine synthase {Escherichia coli [TaxId: 562]}	87.31
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	87.11
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	87.1
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	86.99
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	86.91
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	86.81
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	86.73
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.55
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	86.34
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	86.27
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	86.21
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	85.85
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	85.77
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.56
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.21
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	85.1
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.03
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	85.01
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.75
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	84.74
d1t5la2	181	Nucleotide excision repair enzyme UvrB {Bacillus c	84.61
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	84.47
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	84.45
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.42
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	84.32
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	84.23
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	84.22
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	84.04
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	83.77
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	83.67
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.65
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	83.57
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	83.54
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	83.48
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	83.46
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	83.44
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	83.31
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	83.24
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	83.12
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	83.07
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.06
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	83.02
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	82.74
d1ptma_	329	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	82.57
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	82.55
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	82.44
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	82.37
d1h9aa1	195	Glucose 6-phosphate dehydrogenase, N-terminal doma	82.03
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.92
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	81.78
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.77
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	81.74
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	81.7
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.63
d1m1na_	477	Nitrogenase iron-molybdenum protein, alpha chain {	81.59
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	81.58
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.13
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	80.66
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	80.39
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	80.03

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=4.5e-30  Score=178.76  Aligned_cols=118  Identities=25%  Similarity=0.383  Sum_probs=107.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.+.. +.++.++++|++++++++++++++.+
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999888888876554 56789999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||+..  +..+.+.++|+++|++|+.|+|+
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~  120 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYY  120 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhh
Confidence            9999999999999863  55689999999999999999863

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.96  E-value=5.9e-30  Score=178.79  Aligned_cols=118  Identities=25%  Similarity=0.312  Sum_probs=108.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||+++||||++|||+++|+.|+++|++|++++|+++++++...++....++.++..+++|++|+++++++++++.++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999998888887776788999999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||+..   +..+.+.++|+++|++|+.|+|+
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~  121 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFL  121 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHH
T ss_pred             hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhh
Confidence            999999999999763   34578999999999999999873

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.6e-30  Score=177.46  Aligned_cols=118  Identities=26%  Similarity=0.357  Sum_probs=108.7

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+.++||++|||||++|||+++|+.|+++|++|++++|+++++++..++++..  +.++.++++|++++++++++++++.
T Consensus         6 ~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~--g~~~~~~~~Dvs~~~~~~~~~~~~~   83 (255)
T d1fmca_           6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999988876  5678999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC-CCCccCHHHHHHHhhhccccccC
Q 042455           99 ARALPLNILINKAGICG-TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++|+||+||||||... .+.+.+.++|++++++|+.|+|+
T Consensus        84 ~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~  124 (255)
T d1fmca_          84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFH  124 (255)
T ss_dssp             HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHH
T ss_pred             HHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhh
Confidence            99999999999999874 34578999999999999999863

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.96  E-value=8.6e-30  Score=178.11  Aligned_cols=119  Identities=27%  Similarity=0.344  Sum_probs=108.0

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.++++||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++.... +.++..+++|++++++++++++++
T Consensus         3 ~~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~   81 (260)
T d1h5qa_           3 FTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQI   81 (260)
T ss_dssp             EEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999999888887776554 567899999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+++|++|+||||||...  +..+.+.++|++++++|+.|+|
T Consensus        82 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~  123 (260)
T d1h5qa_          82 DADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVF  123 (260)
T ss_dssp             HHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHhCCCcEecccccccccCCHHHhccccccccccccccchh
Confidence            999999999999999873  4568999999999999999876

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.96  E-value=2e-29  Score=175.95  Aligned_cols=113  Identities=27%  Similarity=0.352  Sum_probs=105.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      ||++|||||++|||+++|+.|+++|++|++++|+++.+++..+++...  +.++.++++|++|+++++++++++.+++|+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            899999999999999999999999999999999999999999988766  568999999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ||+||||||...  +..+++.++|+++|++|+.|+|+
T Consensus        80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~  116 (257)
T d2rhca1          80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFR  116 (257)
T ss_dssp             CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhH
Confidence            999999999874  55689999999999999999863

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-29  Score=175.29  Aligned_cols=118  Identities=25%  Similarity=0.259  Sum_probs=110.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++++|++|||||++|||+++|+.|+++|++|++++|++++++++.++++...+..++.+++||++++++++++++++.++
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            48899999999999999999999999999999999999999999999988766678999999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||...  +..+.+.++|++.+++|+.++|+
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~  126 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSI  126 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHH
T ss_pred             cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHH
Confidence            999999999999873  56689999999999999998763

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=4.1e-29  Score=173.88  Aligned_cols=119  Identities=26%  Similarity=0.267  Sum_probs=109.4

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..+++++|++|||||++|||+++|+.|+++|++|++++|+++.+++..+++...  +.++..+++|++|+++++++++++
T Consensus         4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999888765  567999999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      .+++|+||+||||||...  +..+.+.++|++++++|+.++|+
T Consensus        82 ~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~  124 (251)
T d2c07a1          82 LTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFY  124 (251)
T ss_dssp             HHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHH
T ss_pred             HHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhh
Confidence            999999999999999874  45678999999999999999863

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.96  E-value=6.6e-29  Score=173.53  Aligned_cols=117  Identities=29%  Similarity=0.311  Sum_probs=107.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++||++|||||++|||+++|+.|+++|++|++++|+++++++..+++...  +.++.++++|++|+++++++++++.+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999998888776  57889999999999999999999999


Q ss_pred             cCC-CccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          100 RAL-PLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~-~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++ ++|+||||||...  +..+.+.|+|+++|++|+.|+|+
T Consensus        82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~  123 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYH  123 (259)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEE
Confidence            886 7999999999874  45689999999999999999863

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.96  E-value=4.2e-29  Score=174.68  Aligned_cols=117  Identities=21%  Similarity=0.280  Sum_probs=105.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++||+++||||++|||+++|+.|+++|++|++++|+.+ .+++..++++..  +.++..+++|++|+++++++++++.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAI   80 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999865 566667777665  5789999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++|+||+||||||+..  +..+++.++|++++++|+.|+|+
T Consensus        81 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~  122 (261)
T d1geea_          81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFL  122 (261)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchh
Confidence            99999999999999874  45689999999999999999863

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.96  E-value=2.8e-29  Score=175.17  Aligned_cols=114  Identities=25%  Similarity=0.440  Sum_probs=104.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |.++||+++||||++|||+++|+.|+++|++|++++|+.+++++..+++     +.++.++++|++|+++++++++++.+
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~~~~   75 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALDVTDQASIDRCVAELLD   75 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence            3588999999999999999999999999999999999999888888776     56789999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||...  +..+.+.++|++++++|+.|+|+
T Consensus        76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~  116 (256)
T d1k2wa_          76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLF  116 (256)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HhCCccEEEeecccccccccccCCHHHHHhhhceeeecccc
Confidence            9999999999999874  55688999999999999998763

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.96  E-value=5.7e-29  Score=173.49  Aligned_cols=113  Identities=22%  Similarity=0.292  Sum_probs=104.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .|++|||||++|||+++|+.|+++|++|++++|+++++++..+++...  +.++.++++|++|+++++++++++.+++|+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGG   78 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            478899999999999999999999999999999999999998888776  568999999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ||+||||||+..  +..+.+.++|+++|++|+.|+|+
T Consensus        79 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~  115 (255)
T d1gega_          79 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIW  115 (255)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             ccEEEecccccccCcHHHhhhhhhhhhhhhcccchhh
Confidence            999999999874  45689999999999999999863

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.6e-29  Score=171.76  Aligned_cols=113  Identities=27%  Similarity=0.335  Sum_probs=103.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++||+++||||++|||+++|+.|+++|++|++++|+++.++++.+++     +.+...+.+|++++++++++++++.++
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   75 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-----GANGKGLMLNVTDPASIESVLEKIRAE   75 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-----CCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence            578999999999999999999999999999999999999988888777     456788999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||...  +..+.+.++|+++|++|+.|+|+
T Consensus        76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~  115 (243)
T d1q7ba_          76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFR  115 (243)
T ss_dssp             TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             cCCcceehhhhhhccccccccccccccccccceeechhhh
Confidence            999999999999874  45689999999999999999873

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=171.09  Aligned_cols=115  Identities=26%  Similarity=0.299  Sum_probs=107.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++||+++||||++|||+++|++|+++|++|++++|+++++++..+++...  +.++..+.||++|+++++++++++.++
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999988765  578999999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|++|||||...  +..+.+.++|+++|++|++|++
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~  120 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF  120 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHH
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcceeeeccH
Confidence            999999999999874  4557889999999999999986

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=7e-29  Score=172.00  Aligned_cols=113  Identities=23%  Similarity=0.329  Sum_probs=103.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||+++||||++|||+++|+.|+++|++|++++|++++++++.+++     +.++.++++|++|+++++++++++.++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999998888877766     456888999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|++|+||||||...  +..+.+.++|+++|++|+.|+|+
T Consensus        78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~  117 (244)
T d1nffa_          78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFL  117 (244)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHH
T ss_pred             hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhH
Confidence            999999999999874  56689999999999999999873

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.96  E-value=8.6e-29  Score=173.02  Aligned_cols=116  Identities=23%  Similarity=0.257  Sum_probs=106.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++.+++..+++...  +.++..+.+|++|+++++++++++.++
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999988888765  578999999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||...   +..+.+.++|+++|++|+.++|+
T Consensus        80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~  120 (260)
T d1zema1          80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH  120 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             hCCCCeehhhhccccccCccccccHHHHHhhcccccccccc
Confidence            999999999999763   45579999999999999999863

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=9.2e-29  Score=172.77  Aligned_cols=119  Identities=22%  Similarity=0.206  Sum_probs=106.5

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..++|+||++|||||++|||+++|+.|+++|++|++++|+++++++..+++...  +.++..+.+|++++++++++++++
T Consensus         2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEeccCCCHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999998888776  567999999999999999999999


Q ss_pred             HhcC-CCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           98 TARA-LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        98 ~~~~-~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      .+++ |++|+||||||...  +..+.+.++|+++|++|+.|+|+
T Consensus        80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~  123 (259)
T d1xq1a_          80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYH  123 (259)
T ss_dssp             HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhhee
Confidence            9987 78999999999874  56689999999999999999863

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.96  E-value=8.8e-29  Score=172.18  Aligned_cols=115  Identities=22%  Similarity=0.302  Sum_probs=105.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++.+++..+++..   +.++.++++|++|+++++++++++.++
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999988888877743   457899999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||...  +..+.+.++|+++|++|+.|+|+
T Consensus        80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~  119 (251)
T d1zk4a1          80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFF  119 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHH
T ss_pred             hCCceEEEeccccccccchhcccccchhhhccccccccch
Confidence            999999999999873  56689999999999999999863

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.96  E-value=5.5e-29  Score=173.99  Aligned_cols=117  Identities=26%  Similarity=0.306  Sum_probs=103.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .|+||++|||||++|||+++|+.|+++|++|++++|++ +.+++...++.... +.++.++++|++|+++++++++++.+
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999975 45666666665544 56899999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||+..  +..+.+.++|+++|++|+.|+|+
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~  120 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH  120 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HhCCCcEEEeecccccCCchhhhhHHhhhhhhhcccccccc
Confidence            9999999999999874  45689999999999999999863

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=8e-29  Score=171.56  Aligned_cols=112  Identities=23%  Similarity=0.328  Sum_probs=100.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |.++||++|||||++|||+++|+.|+++|++|++++|+++++++..+++       .+.+++||++|+++++++++++.+
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~   73 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALA   73 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999988877765533       356789999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||+..  +..+.+.++|+++|++|+.|+|+
T Consensus        74 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~  114 (242)
T d1ulsa_          74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFL  114 (242)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCceEEEECCcccccCchhhCcchhhhccccccchhhhh
Confidence            9999999999999874  45689999999999999999863

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.96  E-value=7.2e-29  Score=172.85  Aligned_cols=113  Identities=24%  Similarity=0.290  Sum_probs=103.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++||++|||||++|||+++|++|+++|++|++++|+++++++..+++     +.++.++++|++++++++++++++.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999998887766655     567899999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||+..  +..+.+.++|++++++|+.|+|+
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~  116 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFI  116 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHH
T ss_pred             cCCccEEEecCccccccccccccccccchhhhHHhhHHHH
Confidence            999999999999874  45688999999999999999863

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.95  E-value=3.2e-28  Score=168.95  Aligned_cols=114  Identities=25%  Similarity=0.293  Sum_probs=99.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||+++||||++|||+++|+.|+++|++|++++|++....  ...++..  +.++..+++|++|+++++++++++.++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~--~~~~~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~   77 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEA--EAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIST   77 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHH--HHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHH--HHHHHHc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999875422  2233333  678999999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||+..  +..+.+.++|+++|++|+.|+|+
T Consensus        78 ~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~  117 (247)
T d2ew8a1          78 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFL  117 (247)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhH
Confidence            999999999999874  45689999999999999999873

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-28  Score=172.80  Aligned_cols=121  Identities=23%  Similarity=0.278  Sum_probs=109.2

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC---CCeeEEEEecCCCHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP---AAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ++..++||++|||||++|||+++|+.|+++|++|++++|+.+++++..+++....+   +.++..+++|++|++++++++
T Consensus         6 ~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1           6 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            33568999999999999999999999999999999999999999988888875432   568999999999999999999


Q ss_pred             HHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           95 SDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++.+++|+||+||||||...  +..+.+.++|++++++|+.|+|+
T Consensus        86 ~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~  131 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFY  131 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhh
Confidence            999999999999999999763  56689999999999999999863

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.95  E-value=3.4e-28  Score=169.38  Aligned_cols=113  Identities=27%  Similarity=0.333  Sum_probs=104.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++.+++..+++     +.+..++++|++|+++++++++++.++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            488999999999999999999999999999999999999888887776     566888999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|++|+||||||...  +..+.+.++|+++|++|+.|+|+
T Consensus        78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~  117 (253)
T d1hxha_          78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFI  117 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHH
T ss_pred             hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHH
Confidence            999999999999874  56689999999999999999863

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=4.3e-28  Score=169.75  Aligned_cols=118  Identities=24%  Similarity=0.277  Sum_probs=102.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++||++|||||++|||+++|++|+++|++|++++|+++++++..+++.... +..++.++++|++++++++++++++.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999998887663 245699999999999999999999999


Q ss_pred             cCCCccEEEECcccCC------CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||...      +..+.+.|+|+++|++|+.|+|+
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~  126 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIA  126 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHH
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHH
Confidence            9999999999999752      23356889999999999999863

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-28  Score=169.03  Aligned_cols=112  Identities=25%  Similarity=0.383  Sum_probs=100.2

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++.++++.+++      ..+.++.+|++|+++++++++++.++
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999988877766543      34788999999999999999999999


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||...   +..+++.++|+++|++|+.|+|+
T Consensus        77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~  117 (250)
T d1ydea1          77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYT  117 (250)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHH
Confidence            999999999999763   34478999999999999999863

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=7.7e-28  Score=169.11  Aligned_cols=118  Identities=19%  Similarity=0.221  Sum_probs=105.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++++++..+++.... ++.++..+++|++|+++++++++++.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999988887653 245799999999999999999999999


Q ss_pred             cCCCccEEEECcccCCC--C----CccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICGT--P----FMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~--~----~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||...+  .    .+.+.++|++++++|+.|+|+
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~  126 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE  126 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHH
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHH
Confidence            99999999999998742  1    256778899999999998763

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.95  E-value=7.2e-28  Score=168.92  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=103.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++++++..+++..   ...+.++.||++|+++++++++++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999988888754   345778899999999999999999999


Q ss_pred             CCCccEEEECcccCC--C--CCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--T--PFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~--~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|++|+||||||...  +  ..+.+.++|+++|++|+.|+|+
T Consensus        80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~  121 (268)
T d2bgka1          80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL  121 (268)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHH
T ss_pred             cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhh
Confidence            999999999999863  2  4578999999999999999863

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.95  E-value=2.3e-27  Score=165.54  Aligned_cols=117  Identities=26%  Similarity=0.252  Sum_probs=107.3

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++||++|||||++|||+++|++|+++|++|++++|+++++++..+++...  +..+.++.+|+++.++++++++++.+
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeecCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999988888776  57788999999999999999999999


Q ss_pred             cC-CCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          100 RA-LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~-~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++ +++|+||||||...  +..+++.++|++++++|+.++|+
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~  121 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYH  121 (258)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHH
T ss_pred             HhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccc
Confidence            98 68999999999874  56688999999999999998863

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.95  E-value=1.4e-27  Score=165.06  Aligned_cols=112  Identities=24%  Similarity=0.415  Sum_probs=102.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCE-------EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVH-------VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~-------v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +++|||||++|||+++|+.|+++|++       |++++|+++.+++...++...  +.++.++.+|++|+++++++++++
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHH
Confidence            56899999999999999999999987       899999999999988888765  678999999999999999999999


Q ss_pred             HhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           98 TARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      .+++|++|+||||||...  +..+.+.++|+++|++|+.|+|+
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~  122 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFF  122 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHH
Confidence            999999999999999873  55689999999999999999873

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.8e-27  Score=167.40  Aligned_cols=117  Identities=23%  Similarity=0.321  Sum_probs=104.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++||+++||||++|||+++|+.|+++|++|++++|+++++++..+++.... +..++..+.+|++++++++++++++.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999999999999988887663 235789999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CC--CccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TP--FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~--~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+||++|||||...  +.  .+.+.|+|++++++|+.|+|
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~  122 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI  122 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccc
Confidence            9999999999999753  22  34688999999999999986

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-27  Score=167.85  Aligned_cols=112  Identities=24%  Similarity=0.310  Sum_probs=101.1

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++|||||++|||+++|+.|+++ |++|++++|+.+++++..++++..  +.++.+++||++|.++++++++++.+++|+
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            46699999999999999999986 899999999999999999999877  567889999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ||+||||||+..  +..+.+.++|+++|++|++|+|+
T Consensus        82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~  118 (275)
T d1wmaa1          82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD  118 (275)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHH
T ss_pred             cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence            999999999874  34466778999999999999863

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.1e-27  Score=164.90  Aligned_cols=110  Identities=21%  Similarity=0.270  Sum_probs=96.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++..+ ..+++     +  ..++++|++|+++++++++++.++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~-----~--~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI-----G--GAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH-----T--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc-----C--CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999976533 33332     2  356799999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +|+||+||||||...  +..+.+.|+|+++|++|+.|+|+
T Consensus        74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~  113 (248)
T d2d1ya1          74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMH  113 (248)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHH
T ss_pred             cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhh
Confidence            999999999999874  56689999999999999999873

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.94  E-value=2.1e-27  Score=164.32  Aligned_cols=112  Identities=24%  Similarity=0.289  Sum_probs=98.7

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+.+++++...++     +.++.++++|++++++++++++++.++
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999988777655544     577899999999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|++|+||||||...  +..+.+.++|++++++|+.+++
T Consensus        77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~  115 (241)
T d2a4ka1          77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSF  115 (241)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHH
T ss_pred             hCCccEeccccccccccchhhhhcccccccccccccccc
Confidence            999999999999863  5568999999999999998876

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.94  E-value=2.7e-27  Score=166.66  Aligned_cols=114  Identities=23%  Similarity=0.269  Sum_probs=100.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |+++||++|||||++|||+++|+.|+++|++|++++|++++++++..++     +.++..+.+|++++++++++++++.+
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~   75 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVGDVRSLEDQKQAASRCVA   75 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeeEEecccccHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999998888777665     56789999999999999999999999


Q ss_pred             cCCCccEEEECcccCCC-------CCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICGT-------PFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~-------~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|++|++|||||+...       ..+.+.++|+++|++|+.|+|+
T Consensus        76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~  121 (276)
T d1bdba_          76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIH  121 (276)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHH
T ss_pred             HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHH
Confidence            99999999999998631       2234556799999999999863

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-27  Score=164.71  Aligned_cols=110  Identities=29%  Similarity=0.405  Sum_probs=101.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..||++|||||++|||+++|+.|+++|++|++++|+.+++++...++....++.++.++++|++++++++++++++.+++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            36999999999999999999999999999999999999999999888877667889999999999999999999999999


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |+||+||||||...      .++|++++++|+.++|
T Consensus        81 G~iDilVnnAg~~~------~~~~~~~~~~n~~~~~  110 (254)
T d2gdza1          81 GRLDILVNNAGVNN------EKNWEKTLQINLVSVI  110 (254)
T ss_dssp             SCCCEEEECCCCCC------SSSHHHHHHHHTHHHH
T ss_pred             CCcCeecccccccc------cccchheeeeehhhHH
Confidence            99999999999743      3568899999998876

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.94  E-value=9.2e-27  Score=161.28  Aligned_cols=112  Identities=24%  Similarity=0.288  Sum_probs=100.0

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEe-cCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMAD-RNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +++|||||++|||+++|++|+++|++|++.+ |+++.+++..+++...  +.++.++++|++|+++++++++++.+++|+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999875 4666677777777665  578999999999999999999999999999


Q ss_pred             ccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          104 LNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       104 id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ||+||||||...  +..+.+.++|++++++|+.|+|+
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~  116 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFL  116 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHH
Confidence            999999999874  45689999999999999999863

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=4.1e-27  Score=162.42  Aligned_cols=104  Identities=23%  Similarity=0.360  Sum_probs=93.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++||++|||||++|||+++|+.|+++|++|++++|+.+..             ..+..+++|++|+++++++++++.++
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~Dv~~~~~v~~~~~~~~~~   70 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-------------KGLFGVEVDVTDSDAVDRAFTAVEEH   70 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh-------------cCceEEEEecCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999987652             34678899999999999999999999


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +|+||+||||||+..  +..+.+.|+|+++|++|+.++|
T Consensus        71 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~  109 (237)
T d1uzma1          71 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAF  109 (237)
T ss_dssp             HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHH
T ss_pred             cCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhh
Confidence            999999999999874  5568899999999999999886

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=160.81  Aligned_cols=109  Identities=22%  Similarity=0.332  Sum_probs=95.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+.++||++|||||++|||+++|+.|+++|++|++++|+++.++++.+++      ..+..+.+|++|++++++++    
T Consensus         2 ~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~----   71 (244)
T d1pr9a_           2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERAL----   71 (244)
T ss_dssp             CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHH----
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHH----
Confidence            34689999999999999999999999999999999999988887766554      23678899999999987765    


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|+||+||||||...  +..+.+.++|+++|++|+.++|
T Consensus        72 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~  112 (244)
T d1pr9a_          72 GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVI  112 (244)
T ss_dssp             TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhh
Confidence            46799999999999874  5568999999999999999876

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.2e-26  Score=160.59  Aligned_cols=109  Identities=23%  Similarity=0.380  Sum_probs=94.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |+++||++|||||++|||+++|+.|+++|++|++++|++++++++.+++      ..+..+.+|++|++++++++    +
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~----~   70 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKAL----G   70 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHH----T
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHH----H
Confidence            4689999999999999999999999999999999999988877766543      24678899999999887665    4


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++|+||+||||||+..  +..+.+.++|++++++|+.|+|+
T Consensus        71 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~  111 (242)
T d1cyda_          71 GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQ  111 (242)
T ss_dssp             TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred             HcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchH
Confidence            6799999999999864  56689999999999999998763

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.93  E-value=2.2e-26  Score=160.55  Aligned_cols=115  Identities=22%  Similarity=0.291  Sum_probs=102.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .+.||++|||||++|||+++|+.|+++|++|++++++ ++.+++..+++...  +.++..+++|++|+++++++++++.+
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc--CCCceEecCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999987654 45567777777665  56889999999999999999999999


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++|+||++|||||...  +..+.+.++|++.|++|++++|
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~  120 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQF  120 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HcCCCcEEEeccccccccccccchHHHHHHHHhhccceee
Confidence            9999999999999874  4557899999999999999876

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.93  E-value=5.3e-26  Score=160.97  Aligned_cols=122  Identities=23%  Similarity=0.218  Sum_probs=108.6

Q ss_pred             hhccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           15 EVTQGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        15 ~~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      .++|..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++..+++|+++.+++++++
T Consensus        16 ~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~   94 (294)
T d1w6ua_          16 AMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTV   94 (294)
T ss_dssp             CCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHh
Confidence            3456678999999999999999999999999999999999999999988888887654 577889999999999999999


Q ss_pred             HHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           95 SDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+.++++++|+||||||...  +....+.++|.+.+.+|+.+.+
T Consensus        95 ~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~  139 (294)
T d1w6ua_          95 SELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTA  139 (294)
T ss_dssp             HHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccch
Confidence            999999999999999999874  3457889999999999977653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.6e-26  Score=158.41  Aligned_cols=118  Identities=25%  Similarity=0.288  Sum_probs=105.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHH---CCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLAL---RGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~---~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .|+||+++||||++|||+++|++|++   +|++|++++|++++++++.+++....++.++.+++||++++++++++++.+
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~   82 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            58899999999999999999999986   699999999999999999999988877889999999999999999999988


Q ss_pred             Hh----cCCCccEEEECcccCCC-----CCccCHHHHHHHhhhccccccC
Q 042455           98 TA----RALPLNILINKAGICGT-----PFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        98 ~~----~~~~id~lv~~ag~~~~-----~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      .+    .++.+|++|||||..++     ..+.+.++|+++|++|+.|+++
T Consensus        83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~  132 (259)
T d1oaaa_          83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLC  132 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHH
T ss_pred             HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHH
Confidence            76    34679999999997642     3468999999999999999863

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.93  E-value=3.3e-26  Score=159.29  Aligned_cols=112  Identities=25%  Similarity=0.368  Sum_probs=97.9

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC-CHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS-SLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~   98 (138)
                      ++++||++|||||++|||+++|++|+++|++|++++|+.+..+.. .++....++.++.++.+|++ +.++++++++++.
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-AELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH-HHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH-HHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence            468999999999999999999999999999999998887765443 45555666788999999998 6788999999999


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccccC
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +++|+||+||||||.      .+.+.|++++++|+.|+|+
T Consensus        80 ~~~g~iDilvnnAG~------~~~~~~~~~~~vNl~g~~~  113 (254)
T d1sbya1          80 DQLKTVDILINGAGI------LDDHQIERTIAINFTGLVN  113 (254)
T ss_dssp             HHHSCCCEEEECCCC------CCTTCHHHHHHHHTHHHHH
T ss_pred             HHcCCCCEEEeCCCC------CCHHHHHHHHHHHhHHHHH
Confidence            999999999999996      3568899999999999863

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.93  E-value=9.3e-26  Score=158.31  Aligned_cols=116  Identities=22%  Similarity=0.342  Sum_probs=103.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc-chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM-AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+|+||++|||||++|||+++|+.|+++|++|++++++. +.+++..+++...  +.++.++++|++|+++++++++++.
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~   91 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEAV   91 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh--CCceeeEeCCCCCHHHHHHHHHHHH
Confidence            358999999999999999999999999999999998875 4566667777665  5789999999999999999999999


Q ss_pred             hcCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +++|++|++|||+|...  +..+.+.++|++++++|+.++|
T Consensus        92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~  132 (272)
T d1g0oa_          92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQF  132 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceee
Confidence            99999999999999874  4557899999999999999876

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=3.7e-26  Score=158.62  Aligned_cols=111  Identities=24%  Similarity=0.315  Sum_probs=96.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |+.|++|||||++|||+++|++|+++|+  +|++++|+.++++++.    +.. +.++.++++|+++.++++++++++.+
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~----~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~   75 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK----SIK-DSRVHVLPLTVTCDKSLDTFVSKVGE   75 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH----TCC-CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH----Hhh-CCceEEEEEecCCHHHHHHHHHHHHH
Confidence            5679999999999999999999999996  7899999998877643    222 56799999999999999999999988


Q ss_pred             cCC--CccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 RAL--PLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~--~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++  +||+||||||+..   +..+.+.++|+++|++|+.|++
T Consensus        76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~  118 (250)
T d1yo6a1          76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVV  118 (250)
T ss_dssp             HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHH
T ss_pred             HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHH
Confidence            765  4999999999864   3457889999999999999986

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.3e-25  Score=156.21  Aligned_cols=117  Identities=11%  Similarity=0.135  Sum_probs=99.2

Q ss_pred             cCCCCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      +.++++||++|||||++  |||+++|++|+++|++|++++|+++..++. .++...  ......+++|++|+++++++++
T Consensus         2 ~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~-~~~~~~--~~~~~~~~~D~~~~~~v~~~~~   78 (256)
T d1ulua_           2 LTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA-EKLAEA--LGGALLFRADVTQDEELDALFA   78 (256)
T ss_dssp             EEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHHH--TTCCEEEECCTTCHHHHHHHHH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH-HHhhhc--cCcccccccccCCHHHHHHHHH
Confidence            44579999999999986  899999999999999999999987554443 333333  3457789999999999999999


Q ss_pred             HHHhcCCCccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455           96 DFTARALPLNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++.+++|+||+||||||...      +..+.+.++|+..+++|+.+++
T Consensus        79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~  126 (256)
T d1ulua_          79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLV  126 (256)
T ss_dssp             HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHH
Confidence            99999999999999999753      3457889999999999998875

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=5.2e-26  Score=161.79  Aligned_cols=115  Identities=21%  Similarity=0.256  Sum_probs=98.4

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc---------chhHHHHHHHHhcCCCCeeEEEEecCCCHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM---------AAGRDVKVAIVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~---------~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      +++++||++|||||++|||+++|+.|+++|++|++++++.         +.+++...++...     .....+|+++.++
T Consensus         2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~   76 (302)
T d1gz6a_           2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR-----GGKAVANYDSVEA   76 (302)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT-----TCEEEEECCCGGG
T ss_pred             CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhc-----ccccccccchHHH
Confidence            3468999999999999999999999999999999997753         3455566666443     3456789999999


Q ss_pred             HHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHHHHHhhhccccccC
Q 042455           90 VRKFASDFTARALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++++++++.+++|+||+||||||+..  +..+.+.++|++++++|+.|+|+
T Consensus        77 ~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~  127 (302)
T d1gz6a_          77 GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQ  127 (302)
T ss_dssp             HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHH
Confidence            99999999999999999999999874  55689999999999999999873

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=152.29  Aligned_cols=115  Identities=23%  Similarity=0.245  Sum_probs=105.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++||++|||||++|||+++|++|+++|++|++++|+++.+++...++.... +..+..+.+|+++.+.++.+++.+...+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999888776554 5788999999999999999999999999


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.+|+++||||...  +..+.+.++|++++++|+.|++
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~  128 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYV  128 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHH
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHH
Confidence            99999999999874  4557899999999999999875

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=6.6e-25  Score=152.08  Aligned_cols=111  Identities=20%  Similarity=0.353  Sum_probs=95.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHH---HCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh-
Q 042455           24 GVTAIVTGASSGIGAETTRVLA---LRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA-   99 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~---~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-   99 (138)
                      .|++|||||++|||+++|+.|+   ++|++|++++|++++++++.+ +...  +.++.+++||++|+++++++++++.+ 
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAKN--HSNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH-HHHH--CTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHhc--CCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            4899999999999999999997   468999999999998877653 4443  45789999999999999999998854 


Q ss_pred             -cCCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          100 -RALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 -~~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       +++++|+||||||+..   +..+.+.++|++++++|+.|+|
T Consensus        79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~  120 (248)
T d1snya_          79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI  120 (248)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHH
Confidence             6789999999999864   2347899999999999999986

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=3e-23  Score=142.60  Aligned_cols=99  Identities=20%  Similarity=0.189  Sum_probs=82.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |+||++|||||++|||+++|+.|+++|++|++++|+++.+++       .  +  ..++.+|+++.      ++.+.+++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~-------~--~--~~~~~~Dv~~~------~~~~~~~~   64 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR-------S--G--HRYVVCDLRKD------LDLLFEKV   64 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------T--C--SEEEECCTTTC------HHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh-------c--C--CcEEEcchHHH------HHHHHHHh
Confidence            689999999999999999999999999999999998755432       1  2  24678999753      44566678


Q ss_pred             CCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++||+||||||...  +..+.+.++|++.+++|+.++|
T Consensus        65 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~  102 (234)
T d1o5ia_          65 KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMI  102 (234)
T ss_dssp             CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             CCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhh
Confidence            99999999999763  4557899999999999999876

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.88  E-value=8.3e-24  Score=146.88  Aligned_cols=105  Identities=14%  Similarity=0.077  Sum_probs=91.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||++|||+++|+.|+++|++|++++|+.+..+++.... ..       +..+|+++.++++++++++.+++|+||
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~-~~-------~~~~dv~~~~~~~~~~~~~~~~~G~iD   73 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFA-ET-------YPQLKPMSEQEPAELIEAVTSAYGQVD   73 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHH-HH-------CTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhh-Cc-------EEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence            7999999999999999999999999999999988877654332 22       236899999999999999999999999


Q ss_pred             EEEECcccCC---CCCccCHHHHHHHhhhccccccC
Q 042455          106 ILINKAGICG---TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       106 ~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      +||||||...   +..+.+.++|++.+++|+.++|+
T Consensus        74 iLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~  109 (252)
T d1zmta1          74 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA  109 (252)
T ss_dssp             EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHH
T ss_pred             EEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence            9999999753   45578999999999999998763

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.4e-23  Score=144.35  Aligned_cols=112  Identities=21%  Similarity=0.260  Sum_probs=90.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEE---EEecCcchhHHHHHHHHhc-CCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVI---MADRNMAAGRDVKVAIVMQ-NPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~---~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .|++|||||++|||+++|+.|+++|++++   ++.|+.+..+++.+..... ..+.++..+.||++|+++++++++++.+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            68899999999999999999999998644   4566655444433333221 2357899999999999999999998743


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                        +++|+||||+|...  +..+.+.++|+++|++|+.|++
T Consensus        82 --g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~  119 (285)
T d1jtva_          82 --GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTV  119 (285)
T ss_dssp             --SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHH
T ss_pred             --cchhhhhhcccccccccccchhHhhhhhhhhcchhHHH
Confidence              78999999999874  4557899999999999999976

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-22  Score=138.40  Aligned_cols=106  Identities=22%  Similarity=0.328  Sum_probs=88.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++||++|||||++|||+++|+.|+++|++|++++|+++++++..+       ...+....+|+.+.+.++.+    .+.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~-------~~~~~~~~~d~~~~~~~~~~----~~~   71 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK-------YPGIQTRVLDVTKKKQIDQF----ANE   71 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG-------STTEEEEECCTTCHHHHHHH----HHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-------ccCCceeeeecccccccccc----ccc
Confidence            4899999999999999999999999999999999999876654322       23467788899887665554    445


Q ss_pred             CCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++++|+||||+|...  +..+.+.++|++.+++|+.+++
T Consensus        72 ~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~  110 (245)
T d2ag5a1          72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMY  110 (245)
T ss_dssp             CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             cccceeEEecccccCCCChhhCCHHHHHHHHHHhhccch
Confidence            689999999999875  4568899999999999999876

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.3e-21  Score=133.88  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=101.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +++||++|||||++|||+++|++|+++|++|++++|+++.+++..+++     +.......+|+.+.+.++..+..+...
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKGK   76 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCcccccccccccccccccccccccc
Confidence            578999999999999999999999999999999999999998888777     566888999999999999999999988


Q ss_pred             CCCccEEEECcccCC--------CCCccCHHHHHHHhhhccccccC
Q 042455          101 ALPLNILINKAGICG--------TPFMLSKDNIELHFATNHLGAFY  138 (138)
Q Consensus       101 ~~~id~lv~~ag~~~--------~~~~~~~~~~~~~~~~n~~g~~~  138 (138)
                      ++.+|.+++|+++..        +..+.+.++|++++++|+.++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~  122 (248)
T d2o23a1          77 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFN  122 (248)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHH
T ss_pred             cccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHH
Confidence            899999999998752        23457889999999999998763

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.86  E-value=1.5e-21  Score=135.52  Aligned_cols=111  Identities=26%  Similarity=0.380  Sum_probs=95.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc---chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM---AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++|||||++|||+++|++|+++|+ +|++++|+.   +..++...++...  +.++.++.||++|.++++++++++.+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhhccccc
Confidence            56999999999999999999999998 699999974   3456666666655  68899999999999999999998755


Q ss_pred             cCCCccEEEECcccCC--CCCccCHHHHHHHhhhcccccc
Q 042455          100 RALPLNILINKAGICG--TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~--~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       .+++|++|||+|...  +..+.+.++|+.++++|+.|++
T Consensus        87 -~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~  125 (259)
T d2fr1a1          87 -DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGAR  125 (259)
T ss_dssp             -TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHH
T ss_pred             -cccccccccccccccccccccccHHHHHHHhhhhccchh
Confidence             468999999999874  4557899999999999998865

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.85  E-value=5.8e-22  Score=139.89  Aligned_cols=120  Identities=18%  Similarity=0.097  Sum_probs=89.5

Q ss_pred             cCCCCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC---------CC-eeEEEEec--
Q 042455           18 QGIDAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP---------AA-KVDVMELD--   83 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~---------~~-~~~~~~~D--   83 (138)
                      ++++|+||++|||||++  |||+++|+.|+++|++|++++|++...............         .. .-....+|  
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV   81 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence            35689999999999875  999999999999999999999976543332222211100         00 01222333  


Q ss_pred             ------------------CCCHHHHHHHHHHHHhcCCCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455           84 ------------------LSSLASVRKFASDFTARALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        84 ------------------~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                                        .++...++++++++.+++|+||+||||||...    +..+.+.++|++.+++|+.++|
T Consensus        82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~  157 (297)
T d1d7oa_          82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFV  157 (297)
T ss_dssp             CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhh
Confidence                              24556678999999999999999999999752    4567899999999999998876

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.85  E-value=2.6e-21  Score=129.12  Aligned_cols=108  Identities=16%  Similarity=0.219  Sum_probs=92.4

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ...+++||+++||||++|||+++|+.|+++|++|++++|+.+++++..+++...   ..+....+|+++.+++++++   
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~---   90 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAV---   90 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHT---
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHHHHh---
Confidence            356899999999999999999999999999999999999999998888877654   23456889999999887664   


Q ss_pred             HhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                          +++|+||||||..  ....+.+.|+..+++|+.+.+
T Consensus        91 ----~~iDilin~Ag~g--~~~~~~e~~~~~~~~nv~~~~  124 (191)
T d1luaa1          91 ----KGAHFVFTAGAIG--LELLPQAAWQNESSIEIVADY  124 (191)
T ss_dssp             ----TTCSEEEECCCTT--CCCBCHHHHHTCTTCCEEEEC
T ss_pred             ----cCcCeeeecCccc--cccCCHHHHHhhhcceeehhH
Confidence                5689999999963  345789999999999987765

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=2.2e-21  Score=135.98  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=85.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC-cchhHHHHHHHHhcCCCCeeEE-----------------EEecCCC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRN-MAAGRDVKVAIVMQNPAAKVDV-----------------MELDLSS   86 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~-~~~~~~~~~~l~~~~~~~~~~~-----------------~~~D~~~   86 (138)
                      -++|||||++|||+++|+.|+++|++|++++++ ++.++++.+++....+ .....                 +.+|+++
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcC-CceEEEEeecccccccccccccccccCCC
Confidence            479999999999999999999999999998775 4556667777766553 33444                 4556999


Q ss_pred             HHHHHHHHHHHHhcCCCccEEEECcccCC--CCCccCHHHH--------------HHHhhhcccccc
Q 042455           87 LASVRKFASDFTARALPLNILINKAGICG--TPFMLSKDNI--------------ELHFATNHLGAF  137 (138)
Q Consensus        87 ~~~~~~~~~~~~~~~~~id~lv~~ag~~~--~~~~~~~~~~--------------~~~~~~n~~g~~  137 (138)
                      +++++++++++.+++|+||+||||||...  +..+.+.++|              ..+|.+|+.++|
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  148 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY  148 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeee
Confidence            99999999999999999999999999874  3344444444              357888887765

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.81  E-value=1e-19  Score=126.52  Aligned_cols=113  Identities=16%  Similarity=0.161  Sum_probs=92.1

Q ss_pred             CCCCCEEEEeCC--CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGA--SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~--~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .|+||++|||||  ++|||+++|++|+++|++|++++|+.++..+..   .+.. +.+...+++|+++.++++++++.+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~---~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~   78 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRI---TDRL-PAKAPLLELDVQNEEHLASLAGRVT   78 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHH---HTTS-SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHH---HHHc-CCceeeEeeecccccccccccchhh
Confidence            589999999995  568999999999999999999999987654322   2222 5667889999999999999998886


Q ss_pred             hc---CCCccEEEECcccCC-------CCCccCHHHHHHHhhhcccccc
Q 042455           99 AR---ALPLNILINKAGICG-------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~---~~~id~lv~~ag~~~-------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.   ++++|++|||+|...       +..+.+.++|.+.+.+|+.+.+
T Consensus        79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (268)
T d2h7ma1          79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYA  127 (268)
T ss_dssp             HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHH
Confidence            54   578999999999752       2346788999999999886653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.81  E-value=1.7e-19  Score=125.94  Aligned_cols=92  Identities=13%  Similarity=0.141  Sum_probs=79.4

Q ss_pred             CCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .|+||++|||||+|  |||+++|+.|+++|++|++++|+++ +++...++...  +.......+|+++.++++++++++.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~--~~~~~~~~~d~~~~~~~~~~~~~~~   78 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE--LNSPYVYELDVSKEEHFKSLYNSVK   78 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH--TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhh--CCceeEeeecccchhhHHHHHHHHH
Confidence            47899999999865  8999999999999999999999854 44445556555  3456778999999999999999999


Q ss_pred             hcCCCccEEEECcccCC
Q 042455           99 ARALPLNILINKAGICG  115 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~  115 (138)
                      +.+|++|++|+|+|...
T Consensus        79 ~~~g~id~lV~nag~~~   95 (274)
T d2pd4a1          79 KDLGSLDFIVHSVAFAP   95 (274)
T ss_dssp             HHTSCEEEEEECCCCCC
T ss_pred             HHcCCCCeEEeeccccc
Confidence            99999999999999864

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=2.1e-19  Score=123.13  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=81.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh--cC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA--RA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~  101 (138)
                      ++++|||||++|||+++|++|+++|++|++++|+++..            ........+|+++.+......+.+..  ++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ------------ADSNILVDGNKNWTEQEQSILEQTASSLQG   69 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT------------SSEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc------------ccccceeccccCchhHHHHHHHHHHHHhcC
Confidence            45679999999999999999999999999999987531            23345567888888887777776665  57


Q ss_pred             CCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++||+||||||...   +..+.+.+.|+.++++|+.+++
T Consensus        70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~  108 (235)
T d1ooea_          70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSA  108 (235)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHH
Confidence            89999999999753   2334556889999999999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.2e-19  Score=123.14  Aligned_cols=103  Identities=12%  Similarity=0.097  Sum_probs=84.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc--
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR--  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--  100 (138)
                      +||++|||||++|||+++|+.|+++|++|+++++++...            ........+|.++.+..+.+...+.+.  
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE------------ASASVIVKMTDSFTEQADQVTAEVGKLLG   68 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT------------SSEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccccceeecccCcHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999999999999876431            234456678888888888888877664  


Q ss_pred             CCCccEEEECcccCC---CCCccCHHHHHHHhhhcccccc
Q 042455          101 ALPLNILINKAGICG---TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       101 ~~~id~lv~~ag~~~---~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .++||+||||||...   +..+.+.++|+++|++|+.+++
T Consensus        69 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~  108 (236)
T d1dhra_          69 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTST  108 (236)
T ss_dssp             TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHH
Confidence            357999999999653   2345677899999999998875

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.77  E-value=1.5e-18  Score=120.35  Aligned_cols=90  Identities=19%  Similarity=0.197  Sum_probs=74.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCC----CHHHHHHHHHHHHh
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLS----SLASVRKFASDFTA   99 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~----~~~~~~~~~~~~~~   99 (138)
                      .++|||||++|||+++|+.|+++|++|++++|+.++ .+++.+++.... +.+....++|+.    ..+.++++++.+.+
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDCSFR   80 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc-CCceEEEecccccchhHHHHHHHHHHHHHH
Confidence            379999999999999999999999999999998665 566677777665 355666665554    46778888999999


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      ++|++|+||||||+..
T Consensus        81 ~~g~iDilvnnAG~~~   96 (266)
T d1mxha_          81 AFGRCDVLVNNASAYY   96 (266)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HhCCCCEEEECCccCC
Confidence            9999999999999864

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.77  E-value=9e-19  Score=125.39  Aligned_cols=115  Identities=11%  Similarity=0.089  Sum_probs=88.4

Q ss_pred             CCCEEEEeC--CCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC----------CCeeEEEE---------
Q 042455           23 AGVTAIVTG--ASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP----------AAKVDVME---------   81 (138)
Q Consensus        23 ~~k~~litG--~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~---------   81 (138)
                      .+|++||||  +++|||+++|+.|+++|++|++++++................          ........         
T Consensus         1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (329)
T d1uh5a_           1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence            379999999  557999999999999999999999887654443332222111          01112222         


Q ss_pred             -----------ecCCCHHHHHHHHHHHHhcCCCccEEEECcccCC----CCCccCHHHHHHHhhhcccccc
Q 042455           82 -----------LDLSSLASVRKFASDFTARALPLNILINKAGICG----TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        82 -----------~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~----~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                                 +|+++.++++++++++.+.+|+||+||||+|...    +..+++.++|++++++|+++++
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~  151 (329)
T d1uh5a_          81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLI  151 (329)
T ss_dssp             GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred             ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHH
Confidence                       3667888899999999999999999999999753    4557899999999999998765

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3e-18  Score=118.51  Aligned_cols=114  Identities=13%  Similarity=0.163  Sum_probs=93.1

Q ss_pred             CCCCCEEEEeCCCC--chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASS--GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~--~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .++||++|||||++  |||+++|+.|+++|++|++++|+++..+.. .++...  ......+..|+++..++...++++.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   78 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV-EEFAAQ--LGSDIVLQCDVAEDASIDTMFAELG   78 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH-HHHHHH--TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHHHhh--cCCcceeecccchHHHHHHHHHHhh
Confidence            47899999999998  899999999999999999999986554443 444443  3456788999999999999999999


Q ss_pred             hcCCCccEEEECcccCCCC-------CccCHHHHHHHhhhcccccc
Q 042455           99 ARALPLNILINKAGICGTP-------FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~-------~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ..++++|++|+|++.....       .....+.|...+.+|+.+.+
T Consensus        79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (258)
T d1qsga_          79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFV  124 (258)
T ss_dssp             TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHH
T ss_pred             hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999976311       13566778888888877643

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=5.6e-15  Score=100.64  Aligned_cols=99  Identities=25%  Similarity=0.338  Sum_probs=80.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .|++|||||++|||+++|+.|+++|++|++++|+++.              .+....++|+++......+........ .
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~~~~-~   65 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG--------------EDLIYVEGDVTREEDVRRAVARAQEEA-P   65 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS--------------SSSEEEECCTTCHHHHHHHHHHHHHHS-C
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc--------------ccceEeeccccchhhhHHHHHhhhccc-c
Confidence            3899999999999999999999999999999998643              346678999999999999998877665 4


Q ss_pred             ccEEEECcccCC------CCCccCHHHHHHHhhhcccccc
Q 042455          104 LNILINKAGICG------TPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       104 id~lv~~ag~~~------~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      .+.++.+++...      .....+.+.|++++++|+.+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~  105 (241)
T d1uaya_          66 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTF  105 (241)
T ss_dssp             EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHH
T ss_pred             ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhH
Confidence            555666666542      2335678899999999987754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.53  E-value=2.2e-14  Score=98.51  Aligned_cols=73  Identities=26%  Similarity=0.352  Sum_probs=61.5

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc-CC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR-AL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~  102 (138)
                      .|++|||||++|||+++|++|+++|++|++++|++++                   ..+|+.+.+..+....++..+ .+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-------------------~~~d~~~~~~~~~~~~~~~~~~~~   61 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADLSTAEGRKQAIADVLAKCSK   61 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-------------------EECCTTSHHHHHHHHHHHHTTCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-------------------HHHHhcCHHHHHHHHHHHHHHhCC
Confidence            3899999999999999999999999999999997532                   256888999888877666554 46


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      .+|++|||||+..
T Consensus        62 ~id~lv~~Ag~~~   74 (257)
T d1fjha_          62 GMDGLVLCAGLGP   74 (257)
T ss_dssp             CCSEEEECCCCCT
T ss_pred             CCcEEEEcCCCCC
Confidence            7999999999753

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.2e-14  Score=103.07  Aligned_cols=104  Identities=15%  Similarity=0.155  Sum_probs=73.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-----hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-----AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-----~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .|++|||||+|-||..++++|++.|++|++++|...     +.+....+....  ..++.++.+|++|.++++++++.. 
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~-   77 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTC--NPKFHLHYGDLSDTSNLTRILREV-   77 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhc--CCCeEEEEeecCCHHHHHHHHhcc-
Confidence            389999999999999999999999999999998543     222222222222  457899999999999999999875 


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                          .+|+++|+|+..+...  +.++....+++|+.|+
T Consensus        78 ----~~d~v~h~aa~~~~~~--~~~~~~~~~~~Nv~gt  109 (357)
T d1db3a_          78 ----QPDEVYNLGAMSHVAV--SFESPEYTADVDAMGT  109 (357)
T ss_dssp             ----CCSEEEECCCCCTTTT--TTSCHHHHHHHHTHHH
T ss_pred             ----CCCEEEEeecccccch--hhhCHHHHHHHHHHHH
Confidence                6899999999864322  2233445677777665

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=1e-13  Score=100.32  Aligned_cols=108  Identities=15%  Similarity=0.181  Sum_probs=79.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC----------------cchhHHHHHHHHhcCCCCeeEEEEecCCCH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRN----------------MAAGRDVKVAIVMQNPAAKVDVMELDLSSL   87 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~----------------~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~   87 (138)
                      |+++|||||+|-||.+++++|+++|++|++++.-                .....+....+.... +.++.++.+|++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCTTSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc-CCCcEEEEccCCCH
Confidence            6889999999999999999999999999998621                111222222222221 45689999999999


Q ss_pred             HHHHHHHHHHHhcCCCccEEEECcccCCCC-CccCHHHHHHHhhhcccccc
Q 042455           88 ASVRKFASDFTARALPLNILINKAGICGTP-FMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        88 ~~~~~~~~~~~~~~~~id~lv~~ag~~~~~-~~~~~~~~~~~~~~n~~g~~  137 (138)
                      +.++.+++..     ++|+|+|.|+..... ...+.+.....+.+|+.|+.
T Consensus        80 ~~l~~~~~~~-----~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~  125 (393)
T d1i24a_          80 EFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL  125 (393)
T ss_dssp             HHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh-----cchheecccccccccccccccccccccccccccccc
Confidence            9999999875     699999999875422 23455666677788877653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.45  E-value=7.9e-14  Score=99.42  Aligned_cols=105  Identities=17%  Similarity=0.072  Sum_probs=81.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..||++|||||+|-||..+++.|+++|++|++++|+.............   ...+.++.+|++|++.+..+++..    
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~---~~~i~~~~~Dl~d~~~l~~~~~~~----   78 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREF----   78 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc---ccCCeEEEeeccChHhhhhhhhhc----
Confidence            4689999999999999999999999999999999987765443333221   245889999999999999988875    


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                       .+|++++.|+....  ..+.+.....+.+|+.|+
T Consensus        79 -~~~~v~~~aa~~~~--~~~~~~~~~~~~~Nv~g~  110 (356)
T d1rkxa_          79 -QPEIVFHMAAQPLV--RLSYSEPVETYSTNVMGT  110 (356)
T ss_dssp             -CCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHH
T ss_pred             -hhhhhhhhhccccc--cccccCCccccccccccc
Confidence             68999999986431  223344556777777664

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=8.6e-14  Score=99.06  Aligned_cols=104  Identities=24%  Similarity=0.239  Sum_probs=75.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|-||..+++.|+++|++|++++|...........+.... ..++.++++|++|.+.+.++++..     ++|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~-----~~d   75 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDH-----AID   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHT-----TCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhcc-----CCC
Confidence            39999999999999999999999999999873322211111111111 456889999999999999998863     689


Q ss_pred             EEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          106 ILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       106 ~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      ++||+|+...  ...+.++..+.+++|+.|+.
T Consensus        76 ~ViHlAa~~~--~~~~~~~~~~~~~~Nv~gt~  105 (338)
T d1udca_          76 TVIHFAGLKA--VGESVQKPLEYYDNNVNGTL  105 (338)
T ss_dssp             EEEECCSCCC--HHHHHHCHHHHHHHHHHHHH
T ss_pred             EEEECCCccc--hhhHHhCHHHHHHhHHHHHH
Confidence            9999999633  12233344567888887754

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.42  E-value=5.6e-13  Score=93.95  Aligned_cols=102  Identities=17%  Similarity=0.222  Sum_probs=75.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++|||||+|-||..++++|+++|++|+++++-... ..+....+..   ..++.++.+|+++.+++.++++..     ++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~~~-----~~   73 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKY-----MP   73 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHHhc-----CC
Confidence            58999999999999999999999999998753222 2222222322   356889999999999999999875     68


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++||+|+....  ....++....+++|+.|+.
T Consensus        74 d~Vih~aa~~~~--~~~~~~~~~~~~~Nv~gt~  104 (338)
T d1orra_          74 DSCFHLAGQVAM--TTSIDNPCMDFEINVGGTL  104 (338)
T ss_dssp             SEEEECCCCCCH--HHHHHCHHHHHHHHHHHHH
T ss_pred             ceEEeecccccc--cccccChHHHHHHHHHHHH
Confidence            999999986432  1222344567777877653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.2e-13  Score=88.22  Aligned_cols=79  Identities=19%  Similarity=0.099  Sum_probs=66.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      |..|+++||||+|.||.+++++|+++|++|.++.|+.++....        ....+.++.+|++|.+++.++++      
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~gD~~d~~~l~~al~------   66 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVA------   66 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHT------
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc--------cccccccccccccchhhHHHHhc------
Confidence            5678899999999999999999999999999999998774321        13457889999999999877765      


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                       ..|++|+++|...
T Consensus        67 -~~d~vi~~~g~~~   79 (205)
T d1hdoa_          67 -GQDAVIVLLGTRN   79 (205)
T ss_dssp             -TCSEEEECCCCTT
T ss_pred             -CCCEEEEEeccCC
Confidence             4699999999754

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=4.9e-13  Score=95.32  Aligned_cols=104  Identities=22%  Similarity=0.260  Sum_probs=73.2

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|++|||||+|-||..++++|+++|++|+++++.... .+.....-...  ...+.++.+|++|.+.++.++...     
T Consensus         1 ~K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~-----   73 (347)
T d1z45a2           1 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEY-----   73 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHS-----
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhc--ccCCeEEEeecCCHHHHHHHHhcc-----
Confidence            3789999999999999999999999999998763221 22211111111  356788999999999999988763     


Q ss_pred             CccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          103 PLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       103 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++|++||+|+......  ..+.....+.+|+.|+
T Consensus        74 ~~d~VihlAa~~~~~~--~~~~~~~~~~~N~~~t  105 (347)
T d1z45a2          74 KIDSVIHFAGLKAVGE--STQIPLRYYHNNILGT  105 (347)
T ss_dssp             CCCEEEECCSCCCHHH--HHHSHHHHHHHHHHHH
T ss_pred             CCCEEEEccccccccc--cccCcccccccchhhh
Confidence            6999999999753211  1222344566666554

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=1.1e-12  Score=92.74  Aligned_cols=86  Identities=19%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc-----hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA-----AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~-----~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .|++|||||+|-||..+++.|+++|++|+.++|...     +...+....... ....+.++.+|+++.+.+.+.++.. 
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~~~~~~~~~~-   78 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLHYADLTDASSLRRWIDVI-   78 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH-
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhc-cccceEEEEccccCHHHHHHHHhhh-
Confidence            489999999999999999999999999999998532     222211111111 1356889999999999999998874 


Q ss_pred             hcCCCccEEEECcccCC
Q 042455           99 ARALPLNILINKAGICG  115 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~  115 (138)
                          ++|++||+|+...
T Consensus        79 ----~~D~Vih~Aa~~~   91 (339)
T d1n7ha_          79 ----KPDEVYNLAAQSH   91 (339)
T ss_dssp             ----CCSEEEECCSCCC
T ss_pred             ----ccchhhhcccccc
Confidence                7999999999743

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.8e-12  Score=90.50  Aligned_cols=105  Identities=17%  Similarity=0.172  Sum_probs=74.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec------CcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADR------NMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r------~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .|+||||||+|-||.+++++|+++|+.|+++++      ......+....+.... ..++.++.+|++|.+.+++++.. 
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~-   79 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK-   79 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc-
Confidence            378899999999999999999999999999864      1111112122222111 45788999999999999998876 


Q ss_pred             HhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           98 TARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                          ..+++++|.|+..+.  ..+.++..+.+++|+.|+
T Consensus        80 ----~~~~~i~h~Aa~~~~--~~~~~~p~~~~~~Nv~gt  112 (346)
T d1ek6a_          80 ----YSFMAVIHFAGLKAV--GESVQKPLDYYRVNLTGT  112 (346)
T ss_dssp             ----CCEEEEEECCSCCCH--HHHHHCHHHHHHHHHHHH
T ss_pred             ----cccccccccccccCc--HhhHhCHHHHHHhhhccc
Confidence                368899999997542  122233445677777664

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.5e-12  Score=90.48  Aligned_cols=104  Identities=15%  Similarity=0.110  Sum_probs=71.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch-----hHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA-----GRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~-----~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |++|||||+|-||..++++|+++|++|+.++|....     .+.+....... ....+.++.+|++|.+.+.+++...  
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~--   78 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-IEGNMKLHYGDLTDSTCLVKIINEV--   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhh-ccCCcEEEEeecCCchhhHHHHhhc--
Confidence            445999999999999999999999999999986432     22211111111 1356899999999999999999875  


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                         .++++++.++...  ...+.+.....+++|+.|+
T Consensus        79 ---~~~~v~~~~a~~~--~~~~~~~~~~~~~~Nv~gt  110 (347)
T d1t2aa_          79 ---KPTEIYNLGAQSH--VKISFDLAEYTADVDGVGT  110 (347)
T ss_dssp             ---CCSEEEECCSCCC--HHHHHHSHHHHHHHHTHHH
T ss_pred             ---ccceeeeeeeccc--cchhhccchhhhhhHHHHH
Confidence               6788898888532  1222334445567776654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.27  E-value=4.3e-12  Score=89.14  Aligned_cols=103  Identities=17%  Similarity=0.075  Sum_probs=72.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |++|||||+|.||..+++.|+++|++|+.++|.......  ..+.......++.++.+|++|.+.+.+++...     ..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~--~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~   73 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLRELGIEGDIQYEDGDMADACSVQRAVIKA-----QP   73 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHTTCGGGEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccH--HHHHHhcccCCcEEEEccccChHHhhhhhccc-----cc
Confidence            789999999999999999999999999999986543211  11222222456899999999999999988875     56


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++++++++......  ..+.....+.+|+.|+
T Consensus        74 ~~~~~~a~~~~~~~--~~~~~~~~~~~n~~g~  103 (321)
T d1rpna_          74 QEVYNLAAQSFVGA--SWNQPVTTGVVDGLGV  103 (321)
T ss_dssp             SEEEECCSCCCHHH--HTTSHHHHHHHHTHHH
T ss_pred             cccccccccccccc--cccchHHHHhhhhhch
Confidence            78888887543111  1122344556665544

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.25  E-value=5.2e-12  Score=89.87  Aligned_cols=88  Identities=14%  Similarity=0.094  Sum_probs=68.6

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ...||+||||||+|-||..++++|+++|++|+++.|+.++...................+..|+++.+++..++.     
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----   82 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK-----   82 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT-----
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc-----
Confidence            356999999999999999999999999999999999877665554433333334555667789999887665543     


Q ss_pred             CCCccEEEECcccCC
Q 042455          101 ALPLNILINKAGICG  115 (138)
Q Consensus       101 ~~~id~lv~~ag~~~  115 (138)
                        ..|+++++++...
T Consensus        83 --~~~~v~~~a~~~~   95 (342)
T d1y1pa1          83 --GAAGVAHIASVVS   95 (342)
T ss_dssp             --TCSEEEECCCCCS
T ss_pred             --cchhhhhhccccc
Confidence              5799999998643

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.23  E-value=3.3e-12  Score=91.70  Aligned_cols=103  Identities=15%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEE-EEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHV-IMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v-~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++|||||+|-||..++++|++.|+.+ +++++......  ...+.......++.++.+|++|.+.++.+++..     ++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~   74 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LESLSDISESNRYNFEHADICDSAEITRIFEQY-----QP   74 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc--HHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhC-----CC
Confidence            48999999999999999999999964 44554321110  011112222457899999999999999998874     69


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++||+|+..+.  ..+.++....+++|+.|+.
T Consensus        75 d~VihlAa~~~~--~~~~~~p~~~~~~N~~gt~  105 (361)
T d1kewa_          75 DAVMHLAAESHV--DRSITGPAAFIETNIVGTY  105 (361)
T ss_dssp             SEEEECCSCCCH--HHHHHCTHHHHHHHTHHHH
T ss_pred             CEEEECccccch--hhHHhCHHHHHHHHHHHHH
Confidence            999999996432  1223334557787776653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=2.7e-11  Score=85.80  Aligned_cols=97  Identities=14%  Similarity=0.077  Sum_probs=68.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++|||||+|-||..++++|+++| ++|+++++.........       ...++.++.+|+++.+++.+.+.+      .+
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-------~~~~~~~i~~Di~~~~~~~~~~~~------~~   68 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVK------KC   68 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCSHHHHHHHH------HC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-------cCCCeEEEECccCChHHHHHHHHh------CC
Confidence            48999999999999999999999 58999888654433211       135689999999987665543322      37


Q ss_pred             cEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          105 NILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       105 d~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                      |++||+|+.....  ...+.....+.+|+.|+.
T Consensus        69 d~Vih~a~~~~~~--~~~~~~~~~~~~nv~gt~   99 (342)
T d2blla1          69 DVVLPLVAIATPI--EYTRNPLRVFELDFEENL   99 (342)
T ss_dssp             SEEEECBCCCCHH--HHHHSHHHHHHHHTHHHH
T ss_pred             Ccccccccccccc--ccccCCcccccccccccc
Confidence            9999999975421  122333456777776653

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.09  E-value=3.6e-10  Score=81.18  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=70.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHH-CCCEEEEEec---------CcchhHHHHHHHHhc------CCCCeeEEEEecCCCHHH
Q 042455           26 TAIVTGASSGIGAETTRVLAL-RGVHVIMADR---------NMAAGRDVKVAIVMQ------NPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~-~g~~v~~~~r---------~~~~~~~~~~~l~~~------~~~~~~~~~~~D~~~~~~   89 (138)
                      ++|||||+|-||..++++|++ .|++|+++++         ..+..+.....+...      .....+.++.+|++|.+.
T Consensus         4 KVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~   83 (383)
T d1gy8a_           4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNEDF   83 (383)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHHH
Confidence            589999999999999999996 6889999874         112233333333221      113468889999999999


Q ss_pred             HHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455           90 VRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      ++++++..    .++|+++|.|+.....  ...+.....+++|+.++
T Consensus        84 l~~~~~~~----~~~d~ViH~Aa~~~~~--~~~~~~~~~~~~N~~~t  124 (383)
T d1gy8a_          84 LNGVFTRH----GPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGI  124 (383)
T ss_dssp             HHHHHHHS----CCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHH
T ss_pred             hhhhhhcc----ceeehhhccccccccc--ccccccccccccccccc
Confidence            88888753    5789999999975321  11222334455555443

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=7.4e-12  Score=84.75  Aligned_cols=83  Identities=13%  Similarity=0.146  Sum_probs=61.7

Q ss_pred             hccCCCCCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHH
Q 042455           16 VTQGIDAAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        16 ~~~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      +.+.+.|++|++|||||+|.||.+++++|+++|.  +|.+++|++.......        ...+....+|+.+.+++.  
T Consensus         6 ~~~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~--------~~~i~~~~~D~~~~~~~~--   75 (232)
T d2bkaa1           6 LREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYA--   75 (232)
T ss_dssp             HHHHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGG--
T ss_pred             HHHHhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc--------cceeeeeeeccccccccc--
Confidence            3445568899999999999999999999999985  8999999765432211        234666677887655443  


Q ss_pred             HHHHHhcCCCccEEEECccc
Q 042455           94 ASDFTARALPLNILINKAGI  113 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~  113 (138)
                           ..+...|++++++|.
T Consensus        76 -----~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          76 -----SAFQGHDVGFCCLGT   90 (232)
T ss_dssp             -----GGGSSCSEEEECCCC
T ss_pred             -----ccccccccccccccc
Confidence                 333468999999985

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.05  E-value=3.1e-10  Score=75.64  Aligned_cols=75  Identities=20%  Similarity=0.140  Sum_probs=60.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .++||||||+|.||.++++.|+++|+  .|+.+.|++++...    +     ...+.++.+|+++.+.+.++++      
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~----~-----~~~~~~~~~d~~~~~~~~~~~~------   67 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK----I-----GGEADVFIGDITDADSINPAFQ------   67 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH----T-----TCCTTEEECCTTSHHHHHHHHT------
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh----c-----cCCcEEEEeeeccccccccccc------
Confidence            46899999999999999999999996  46667787654332    1     3457788999999999877764      


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                       .+|.+|++++..
T Consensus        68 -~~d~vi~~a~~~   79 (252)
T d2q46a1          68 -GIDALVILTSAV   79 (252)
T ss_dssp             -TCSEEEECCCCC
T ss_pred             -cceeeEEEEeec
Confidence             479999999865

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.02  E-value=5.7e-10  Score=78.92  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=73.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC---CCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN---PAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      .++.|++|||||+|.||..++++|.+.|++|+++++....-......+....   ....+.++.+|..|.........  
T Consensus        13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~--   90 (341)
T d1sb8a_          13 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--   90 (341)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc--
Confidence            3567899999999999999999999999999999873322111111111111   12458889999998887654432  


Q ss_pred             HhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455           98 TARALPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                           ..+.+++.++...  ...+.++....+++|+.|+.
T Consensus        91 -----~~~~v~~~~a~~~--~~~~~~~~~~~~~~Nv~gt~  123 (341)
T d1sb8a_          91 -----GVDYVLHQAALGS--VPRSINDPITSNATNIDGFL  123 (341)
T ss_dssp             -----TCSEEEECCSCCC--HHHHHHCHHHHHHHHTHHHH
T ss_pred             -----ccccccccccccc--ccccccCccchhheeehhHH
Confidence                 4688888887532  12244556677888887653

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.00  E-value=5.6e-11  Score=84.42  Aligned_cols=102  Identities=19%  Similarity=0.188  Sum_probs=67.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc--chhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM--AAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|+||||||+|-||..++++|+++|++|.++.++.  .....  ..+.... ..++.++.+|+.|.+.+..++.      
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~--~~~~~~~-~~~i~~~~~Di~d~~~~~~~~~------   72 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK--ANLEAIL-GDRVELVVGDIADAELVDKLAA------   72 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG--GGTGGGC-SSSEEEEECCTTCHHHHHHHHT------
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccH--HHHHHhh-cCCeEEEEccCCCHHHHHHHHh------
Confidence            46799999999999999999999998654443321  11000  0111111 4678999999999999887754      


Q ss_pred             CCccEEEECcccCCCCCccCHHHHHHHhhhcccccc
Q 042455          102 LPLNILINKAGICGTPFMLSKDNIELHFATNHLGAF  137 (138)
Q Consensus       102 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~~  137 (138)
                       ..+.+++.|+.....  ...++..+.+++|+.|+.
T Consensus        73 -~~~~v~~~a~~~~~~--~~~~~~~~~~~~N~~g~~  105 (346)
T d1oc2a_          73 -KADAIVHYAAESHND--NSLNDPSPFIHTNFIGTY  105 (346)
T ss_dssp             -TCSEEEECCSCCCHH--HHHHCCHHHHHHHTHHHH
T ss_pred             -hhhhhhhhhhccccc--chhhCcccceeeehHhHH
Confidence             368889998864321  112333456777776653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.98  E-value=5.9e-10  Score=77.13  Aligned_cols=83  Identities=10%  Similarity=0.062  Sum_probs=60.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH-HHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV-KVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~-~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++|||||+|.||.+++++|+++|++|+++.|+....... ...+... ....+.++.+|++|.+.+.+.+.       
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~v~~v~~d~~d~~~~~~~~~-------   74 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYF-KQLGAKLIEASLDDHQRLVDALK-------   74 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHH-HTTTCEEECCCSSCHHHHHHHHT-------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhh-ccCCcEEEEeecccchhhhhhcc-------
Confidence            34699999999999999999999999999999975432111 1111111 13457889999999998877655       


Q ss_pred             CccEEEECcccC
Q 042455          103 PLNILINKAGIC  114 (138)
Q Consensus       103 ~id~lv~~ag~~  114 (138)
                      ..+.++++++..
T Consensus        75 ~~~~~~~~~~~~   86 (312)
T d1qyda_          75 QVDVVISALAGG   86 (312)
T ss_dssp             TCSEEEECCCCS
T ss_pred             Ccchhhhhhhhc
Confidence            467888887754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.94  E-value=8.6e-10  Score=75.53  Aligned_cols=62  Identities=31%  Similarity=0.437  Sum_probs=54.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|.||..++++|.++|++|+.++|++                       +|++|.+.++++++..     ++|
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~~~~~~~l~~~-----~~d   54 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNVLAVNKFFNEK-----KPN   54 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCHHHHHHHHHHc-----CCC
Confidence            389999999999999999999999999998752                       4899999999998875     689


Q ss_pred             EEEECcccCC
Q 042455          106 ILINKAGICG  115 (138)
Q Consensus       106 ~lv~~ag~~~  115 (138)
                      ++||+++...
T Consensus        55 ~vih~a~~~~   64 (281)
T d1vl0a_          55 VVINCAAHTA   64 (281)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEeeccccc
Confidence            9999998643

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=6.6e-10  Score=77.57  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=62.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .|++|||||+|-||.+++++|+++|+.++++++..                      .+|+.+.+.+..++..-     .
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~----------------------~~~~~~~~~~~~~~~~~-----~   54 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASE-----R   54 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch----------------------hccccCHHHHHHHHhhc-----C
Confidence            57899999999999999999999999877665321                      25899999998887752     6


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +|.++++|+..+... .......+.+++|+.|+
T Consensus        55 ~d~v~~~a~~~~~~~-~~~~~~~~~~~~Nv~gt   86 (315)
T d1e6ua_          55 IDQVYLAAAKVGGIV-ANNTYPADFIYQNMMIE   86 (315)
T ss_dssp             CSEEEECCCCCCCHH-HHHHCHHHHHHHHHHHH
T ss_pred             CCEEEEcchhccccc-cchhhHHHHHHHHHHHH
Confidence            899999997653211 12233344566677664

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=1.4e-09  Score=77.34  Aligned_cols=78  Identities=21%  Similarity=0.187  Sum_probs=58.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++.++|||||+|-||..++++|+++|++|+++++.......      ..  .....+..+|+.+.+.+..+++       
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~------~~--~~~~~~~~~D~~~~~~~~~~~~-------   78 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT------ED--MFCDEFHLVDLRVMENCLKVTE-------   78 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC------GG--GTCSEEEECCTTSHHHHHHHHT-------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh------hh--cccCcEEEeechhHHHHHHHhh-------
Confidence            45569999999999999999999999999999875433110      00  1234677889998887766543       


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      .+|.+||.|+...
T Consensus        79 ~~d~Vih~a~~~~   91 (363)
T d2c5aa1          79 GVDHVFNLAADMG   91 (363)
T ss_dssp             TCSEEEECCCCCC
T ss_pred             cCCeEeecccccc
Confidence            5799999998754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=98.86  E-value=8.2e-09  Score=70.70  Aligned_cols=84  Identities=14%  Similarity=0.189  Sum_probs=62.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH--HHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR--DVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      +.|++|||||+|.||.++++.|++.|++|++++|+.....  +....+.... ...+.++.+|+.+.......++     
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~-----   75 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVK-----   75 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHH-----
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhh-----
Confidence            4688999999999999999999999999999999765421  1111121111 3447788999999988777665     


Q ss_pred             CCCccEEEECcccC
Q 042455          101 ALPLNILINKAGIC  114 (138)
Q Consensus       101 ~~~id~lv~~ag~~  114 (138)
                        ..+.++++++..
T Consensus        76 --~~~~vi~~~~~~   87 (307)
T d1qyca_          76 --NVDVVISTVGSL   87 (307)
T ss_dssp             --TCSEEEECCCGG
T ss_pred             --hceeeeeccccc
Confidence              368888888753

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.84  E-value=9.1e-10  Score=75.76  Aligned_cols=65  Identities=22%  Similarity=0.267  Sum_probs=51.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      ++|||||+|-||.++++.|.+.|. ++.+++....                   +.+|++|.+.++++++..     ++|
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~-----~~D   56 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE-------------------FCGDFSNPKGVAETVRKL-----RPD   56 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS-------------------SCCCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc-------------------ccCcCCCHHHHHHHHHHc-----CCC
Confidence            389999999999999999998885 4444443211                   246999999999998875     689


Q ss_pred             EEEECcccCC
Q 042455          106 ILINKAGICG  115 (138)
Q Consensus       106 ~lv~~ag~~~  115 (138)
                      +|||+||...
T Consensus        57 ~Vih~Aa~~~   66 (298)
T d1n2sa_          57 VIVNAAAHTA   66 (298)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEeccccc
Confidence            9999999753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.81  E-value=1.2e-08  Score=72.21  Aligned_cols=78  Identities=18%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHH-HHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLAS-VRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~~  101 (138)
                      +.|+++||||+|.||.++++.|+++|++|+++.|+......  ..+..   ...+..+.+|+.|..+ +..++       
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~---~~~v~~~~gD~~d~~~~~~~a~-------   69 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQA---IPNVTLFQGPLLNNVPLMDTLF-------   69 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHT---STTEEEEESCCTTCHHHHHHHH-------
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcc---cCCCEEEEeeCCCcHHHHHHHh-------
Confidence            47899999999999999999999999999999998776432  22222   2357888999988554 33332       


Q ss_pred             CCccEEEECcc
Q 042455          102 LPLNILINKAG  112 (138)
Q Consensus       102 ~~id~lv~~ag  112 (138)
                      ...|.++.+..
T Consensus        70 ~~~~~~~~~~~   80 (350)
T d1xgka_          70 EGAHLAFINTT   80 (350)
T ss_dssp             TTCSEEEECCC
T ss_pred             cCCceEEeecc
Confidence            24566665544

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.7e-10  Score=77.04  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=60.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      .|++|||||+|-||..++++|+++|++|+++++....-.+...   ......++.....|+.+.            .+.+
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~------------~~~~   65 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE---HWIGHENFELINHDVVEP------------LYIE   65 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTG---GGTTCTTEEEEECCTTSC------------CCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHH---HhcCCCceEEEehHHHHH------------HHcC
Confidence            4789999999999999999999999999998863221111111   111123345555554321            2246


Q ss_pred             ccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          104 LNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       104 id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                      +|++||+|+..+...  +.++..+.+++|+.|+
T Consensus        66 ~d~VihlAa~~~~~~--~~~~~~~~~~~Nv~g~   96 (312)
T d2b69a1          66 VDQIYHLASPASPPN--YMYNPIKTLKTNTIGT   96 (312)
T ss_dssp             CSEEEECCSCCSHHH--HTTCHHHHHHHHHHHH
T ss_pred             CCEEEECcccCCchh--HHhCHHHHHHHHHHHH
Confidence            999999999654211  1123345677777665

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.60  E-value=5e-08  Score=62.92  Aligned_cols=45  Identities=13%  Similarity=0.181  Sum_probs=40.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQ   71 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~   71 (138)
                      +.|+||+|++|.++|+.|+++|++|++.+|++++++++.+++...
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~   47 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI   47 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence            567788899999999999999999999999999998888877654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=3.8e-07  Score=59.02  Aligned_cols=85  Identities=19%  Similarity=0.219  Sum_probs=64.4

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHH---HHHHhcCCCCeeEEEEecCCCHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVK---VAIVMQNPAAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~---~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ..++++|+++|.|+ ||.+++++..|.+.|. +++++.|+.+..++..   +++...   ........|+.+.+.+...+
T Consensus        13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~   88 (182)
T d1vi2a1          13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN---TDCVVTVTDLADQQAFAEAL   88 (182)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH---SSCEEEEEETTCHHHHHHHH
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh---cCcceEeeecccccchhhhh
Confidence            45688999999999 6999999999999998 7999999887665533   333333   23445678888888776554


Q ss_pred             HHHHhcCCCccEEEECcccC
Q 042455           95 SDFTARALPLNILINKAGIC  114 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~  114 (138)
                      .       ..|++||+..+.
T Consensus        89 ~-------~~diiIN~Tp~G  101 (182)
T d1vi2a1          89 A-------SADILTNGTKVG  101 (182)
T ss_dssp             H-------TCSEEEECSSTT
T ss_pred             c-------ccceeccccCCc
Confidence            3       479999998764

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.56  E-value=2.4e-08  Score=69.84  Aligned_cols=100  Identities=18%  Similarity=0.172  Sum_probs=62.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCE------EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVH------VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~------v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++|||||+|-||..+++.|+++|+.      ++..+........  ..+.......++.++..|.++........     
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----   74 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAPVDADPRLRFVHGDIRDAGLLAREL-----   74 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGGGTTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--hHhhhhhcCCCeEEEEeccccchhhhccc-----
Confidence            4899999999999999999999864      4444432111100  01111111457889999999988765432     


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHhhhccccc
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHFATNHLGA  136 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~~g~  136 (138)
                        ..+|.+++.|+....  ....+...+.+++|+.|+
T Consensus        75 --~~~d~vi~~a~~~~~--~~~~~~~~~~~~~N~~gt  107 (322)
T d1r6da_          75 --RGVDAIVHFAAESHV--DRSIAGASVFTETNVQGT  107 (322)
T ss_dssp             --TTCCEEEECCSCCCH--HHHHHCCHHHHHHHTHHH
T ss_pred             --cccceEEeecccccc--cccccchHHHhhhhHHHH
Confidence              368999999986431  122233344566666654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.45  E-value=7.5e-07  Score=56.51  Aligned_cols=87  Identities=15%  Similarity=0.292  Sum_probs=63.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++++++++|+|+ |.+|..+++.|...|+ ++.++.|+.++++++..++     +..+    .+   .+++...+.    
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~-----~~~~----~~---~~~~~~~l~----   83 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-----GGEA----VR---FDELVDHLA----   83 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-----TCEE----CC---GGGHHHHHH----
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh-----hccc----cc---chhHHHHhc----
Confidence            689999999998 9999999999999998 7999999988888877765     3221    12   233333332    


Q ss_pred             cCCCccEEEECcccCCCCCccCHHHHHHHh
Q 042455          100 RALPLNILINKAGICGTPFMLSKDNIELHF  129 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~  129 (138)
                         ..|++|++.+...  .-.+.+.+...+
T Consensus        84 ---~~Divi~atss~~--~ii~~~~i~~~~  108 (159)
T d1gpja2          84 ---RSDVVVSATAAPH--PVIHVDDVREAL  108 (159)
T ss_dssp             ---TCSEEEECCSSSS--CCBCHHHHHHHH
T ss_pred             ---cCCEEEEecCCCC--ccccHhhhHHHH
Confidence               4799999998533  335666665544

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.3e-06  Score=55.86  Aligned_cols=80  Identities=18%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|.+++|+|+++++|...++.....|++|+++++++++.+... ++     +...   ..|.++.+..+.+.+...  -.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~-----Ga~~---vi~~~~~~~~~~i~~~t~--~~   96 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QN-----GAHE---VFNHREVNYIDKIKKYVG--EK   96 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT-----TCSE---EEETTSTTHHHHHHHHHC--TT
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccccccc-cc-----Cccc---ccccccccHHHHhhhhhc--cC
Confidence            6889999999999999999988888999999998776544322 22     3321   236666554444433322  23


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|+++.++|-
T Consensus        97 g~d~v~d~~g~  107 (174)
T d1yb5a2          97 GIDIIIEMLAN  107 (174)
T ss_dssp             CEEEEEESCHH
T ss_pred             CceEEeecccH
Confidence            58999998873

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.37  E-value=1.2e-06  Score=56.54  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +|.+++|+|+++++|.+.++.....|++|+.+.+++++.+....    .  +....   .|-.+.+..+.+.+..  ...
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~----~--Ga~~v---i~~~~~~~~~~~~~~~--~~~   97 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----I--GFDAA---FNYKTVNSLEEALKKA--SPD   97 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----T--TCSEE---EETTSCSCHHHHHHHH--CTT
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh----h--hhhhh---cccccccHHHHHHHHh--hcC
Confidence            58899999999999999999888889999999998776443222    2  33222   2333444444444432  234


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|+++.+.|.
T Consensus        98 Gvd~v~D~vG~  108 (182)
T d1v3va2          98 GYDCYFDNVGG  108 (182)
T ss_dssp             CEEEEEESSCH
T ss_pred             CCceeEEecCc
Confidence            69999999983

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.34  E-value=4.7e-07  Score=59.47  Aligned_cols=70  Identities=14%  Similarity=0.150  Sum_probs=47.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|++|||||+|.||.+++++|+++|.  +|++..|++...            ..++   ..+..|..++   .+   ...
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------------~~~~---~~~~~d~~~~---~~---~~~   60 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------------HPRL---DNPVGPLAEL---LP---QLD   60 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------------CTTE---ECCBSCHHHH---GG---GCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------------cccc---cccccchhhh---hh---ccc
Confidence            58999999999999999999999997  677777754221            1122   3344444332   11   223


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                      +.+|.+|+++|..
T Consensus        61 ~~~d~vi~~~g~~   73 (212)
T d2a35a1          61 GSIDTAFCCLGTT   73 (212)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             cchheeeeeeeee
Confidence            5689999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.28  E-value=1.6e-06  Score=55.07  Aligned_cols=76  Identities=17%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +.|+++|.|+ |.+|..+|+.|+++|++|++++|+.++++++...+      ........+..+.......+.       
T Consensus         1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~------~~~~~~~~~~~~~~~~~~~i~-------   66 (182)
T d1e5qa1           1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVNDDAALDAEVA-------   66 (182)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC------TTEEEEECCTTCHHHHHHHHT-------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc------cccccccccccchhhhHhhhh-------
Confidence            3689999987 89999999999999999999999999887755432      223444556656555555443       


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      ..|.++....
T Consensus        67 ~~~~~i~~~~   76 (182)
T d1e5qa1          67 KHDLVISLIP   76 (182)
T ss_dssp             TSSEEEECSC
T ss_pred             ccceeEeecc
Confidence            3466665543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=3.6e-06  Score=53.67  Aligned_cols=78  Identities=13%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ....++|.++|.|+ ||-+++++..|.+.|+++.++.|+.++++++...+....   .+..+..|  +            
T Consensus        13 ~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~---~~~~~~~~--~------------   74 (170)
T d1nyta1          13 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG---SIQALSMD--E------------   74 (170)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS---SEEECCSG--G------------
T ss_pred             CCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc---cccccccc--c------------
Confidence            45678999999998 788999999999999999999999999888777665432   22222222  1            


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                      ......|++||+..+.
T Consensus        75 ~~~~~~dliIN~Tp~G   90 (170)
T d1nyta1          75 LEGHEFDLIINATSSG   90 (170)
T ss_dssp             GTTCCCSEEEECCSCG
T ss_pred             ccccccceeecccccC
Confidence            0124689999998654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.24  E-value=2.6e-06  Score=55.25  Aligned_cols=87  Identities=14%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             CCCEEEE-eCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH-hc
Q 042455           23 AGVTAIV-TGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT-AR  100 (138)
Q Consensus        23 ~~k~~li-tG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~  100 (138)
                      .|.+++| +||++++|.+.++-.-..|++|+++.|+.+..++..+.+++.  +....+ ..|-.+..++...+.++. ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~l--Gad~vi-~~~~~~~~~~~~~v~~~~~~~  104 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL--GATQVI-TEDQNNSREFGPTIKEWIKQS  104 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH--TCSEEE-EHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhc--cccEEE-eccccchhHHHHHHHHHHhhc
Confidence            3555555 689999999998877778999999988887777666655554  333222 111111122233333332 23


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                      .+.+|+++.+.|
T Consensus       105 g~~vdvv~D~vg  116 (189)
T d1gu7a2         105 GGEAKLALNCVG  116 (189)
T ss_dssp             TCCEEEEEESSC
T ss_pred             cCCceEEEECCC
Confidence            457899999887

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=2.4e-06  Score=54.86  Aligned_cols=79  Identities=11%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +|+++||+||++++|...++.....|++++++.+++++.+.    +++.  +....   .|..+++-.+.+.+..  ...
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~----l~~~--Ga~~v---i~~~~~~~~~~v~~~t--~~~   93 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM----LSRL--GVEYV---GDSRSVDFADEILELT--DGY   93 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH----HHTT--CCSEE---EETTCSTHHHHHHHHT--TTC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccc----cccc--ccccc---ccCCccCHHHHHHHHh--CCC
Confidence            47899999999999999999888889999999988766433    2222  33321   3444443333332221  123


Q ss_pred             CccEEEECcc
Q 042455          103 PLNILINKAG  112 (138)
Q Consensus       103 ~id~lv~~ag  112 (138)
                      ++|+++.++|
T Consensus        94 g~d~v~d~~g  103 (183)
T d1pqwa_          94 GVDVVLNSLA  103 (183)
T ss_dssp             CEEEEEECCC
T ss_pred             CEEEEEeccc
Confidence            6999999998

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=4.2e-06  Score=53.48  Aligned_cols=80  Identities=10%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+++++|+||++++|...++.....|++|+++++++++.+.+. ++     +...   ..|.++++-.+++.+.  ..-.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~-~l-----Ga~~---vi~~~~~d~~~~v~~~--t~g~   96 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KA-----GAWQ---VINYREEDLVERLKEI--TGGK   96 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTTSCHHHHHHHH--TTTC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH-hc-----CCeE---EEECCCCCHHHHHHHH--hCCC
Confidence            5889999999999999999988888999999999988765533 33     3321   2366554444443222  2234


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|+++.++|.
T Consensus        97 g~d~v~d~~g~  107 (179)
T d1qora2          97 KVRVVYDSVGR  107 (179)
T ss_dssp             CEEEEEECSCG
T ss_pred             CeEEEEeCccH
Confidence            68999999874

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=98.16  E-value=9.7e-06  Score=51.76  Aligned_cols=78  Identities=12%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ....++|+++|.|+ ||.+++++..|.+.+.+|.++.|+.++++.+...+...   ..+.....|-.             
T Consensus        13 ~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~-------------   75 (171)
T d1p77a1          13 NWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSI-------------   75 (171)
T ss_dssp             TCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGC-------------
T ss_pred             CCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhccc-------------
Confidence            35678999999988 68899999999987779999999999999988887543   23444443321             


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                       .....|++||+....
T Consensus        76 -~~~~~diiIN~tp~g   90 (171)
T d1p77a1          76 -PLQTYDLVINATSAG   90 (171)
T ss_dssp             -CCSCCSEEEECCCC-
T ss_pred             -cccccceeeeccccc
Confidence             235789999998865

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.10  E-value=1.5e-05  Score=50.36  Aligned_cols=81  Identities=20%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEE-ecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVME-LDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+.+++|+| +|++|...++.+...|++|+++++++++.+...+ +     +....... -.-.+...+   .+.+.+..
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-~-----ga~~~~~~~~~~~~~~~~---~~~~~~~~   95 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-C-----GADVTLVVDPAKEEESSI---IERIRSAI   95 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-T-----TCSEEEECCTTTSCHHHH---HHHHHHHS
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH-c-----CCcEEEeccccccccchh---hhhhhccc
Confidence            578899997 5899999998888889999999999887654332 2     33222211 111233333   34443333


Q ss_pred             -CCccEEEECccc
Q 042455          102 -LPLNILINKAGI  113 (138)
Q Consensus       102 -~~id~lv~~ag~  113 (138)
                       ..+|++|.++|.
T Consensus        96 g~g~D~vid~~g~  108 (170)
T d1e3ja2          96 GDLPNVTIDCSGN  108 (170)
T ss_dssp             SSCCSEEEECSCC
T ss_pred             ccCCceeeecCCC
Confidence             468999999985

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=1.4e-05  Score=50.94  Aligned_cols=75  Identities=15%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..|++++|+|++|++|...++.....|++|+.+++++++.+...+ +     +....   .|..+.      .++. ...
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~-l-----Ga~~~---i~~~~~------~~~~-~~~   89 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-L-----GAEEA---ATYAEV------PERA-KAW   89 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-T-----TCSEE---EEGGGH------HHHH-HHT
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc-c-----cccee---eehhhh------hhhh-hcc
Confidence            468899999999999999999888889999999998877654332 2     33222   233321      1222 233


Q ss_pred             CCccEEEECcc
Q 042455          102 LPLNILINKAG  112 (138)
Q Consensus       102 ~~id~lv~~ag  112 (138)
                      ..+|+++.+.|
T Consensus        90 ~g~D~v~d~~G  100 (171)
T d1iz0a2          90 GGLDLVLEVRG  100 (171)
T ss_dssp             TSEEEEEECSC
T ss_pred             ccccccccccc
Confidence            56999999877

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.07  E-value=7.7e-06  Score=49.88  Aligned_cols=73  Identities=15%  Similarity=0.275  Sum_probs=54.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      .++|.|+ |.+|+.+++.|.+.|++|++++.+++..+.+..++       .+.++..|.++++.++.+      .....|
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~------~i~~a~   67 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA------GIEDAD   67 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT------TTTTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc------Chhhhh
Confidence            4788887 89999999999999999999999988776654321       245777888888876554      223456


Q ss_pred             EEEECcc
Q 042455          106 ILINKAG  112 (138)
Q Consensus       106 ~lv~~ag  112 (138)
                      .++....
T Consensus        68 ~vv~~t~   74 (132)
T d1lssa_          68 MYIAVTG   74 (132)
T ss_dssp             EEEECCS
T ss_pred             hhcccCC
Confidence            6666443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=1.4e-05  Score=51.25  Aligned_cols=81  Identities=22%  Similarity=0.244  Sum_probs=53.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC--CHHHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS--SLASVRKFASDFT   98 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~   98 (138)
                      ..|.+++|+|+ |++|...++.+...|+ +|+++++++++.+.. .++     +....   .|..  +..+..+.+.+..
T Consensus        27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~~v---i~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI-----GADLT---LNRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT-----TCSEE---EETTTSCHHHHHHHHHHHT
T ss_pred             CCCCEEEEECC-Cccchhheeccccccccccccccccccccccc-ccc-----cceEE---EeccccchHHHHHHHHHhh
Confidence            35899999987 8999999998888998 899999998876543 222     33222   2332  3333333233222


Q ss_pred             hcCCCccEEEECccc
Q 042455           99 ARALPLNILINKAGI  113 (138)
Q Consensus        99 ~~~~~id~lv~~ag~  113 (138)
                      . -..+|++|.++|.
T Consensus        97 ~-~~g~Dvvid~vG~  110 (182)
T d1vj0a2          97 H-GRGADFILEATGD  110 (182)
T ss_dssp             T-TSCEEEEEECSSC
T ss_pred             C-CCCceEEeecCCc
Confidence            1 2358999999985

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=7e-06  Score=45.60  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=37.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .++.+++|+|+++|+|...++.+...|++|+.+.+++++.+.+
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            4578999999999999999997778899999999988876554

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=9.4e-05  Score=46.72  Aligned_cols=81  Identities=22%  Similarity=0.248  Sum_probs=55.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+.+++|.|+ |++|...++.+...|+ +|+++++++++.+... ++     +.. ..+..+-.+.......+....  -
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~-----Ga~-~~~~~~~~~~~~~~~~~~~~~--g   95 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI-----GAD-LVLQISKESPQEIARKVEGQL--G   95 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT-----TCS-EEEECSSCCHHHHHHHHHHHH--T
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-Hh-----CCc-ccccccccccccccccccccC--C
Confidence            4778999986 8999999998888998 7999999988766432 22     332 223333345555555444432  2


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.++|.
T Consensus        96 ~g~Dvvid~~G~  107 (171)
T d1pl8a2          96 CKPEVTIECTGA  107 (171)
T ss_dssp             SCCSEEEECSCC
T ss_pred             CCceEEEeccCC
Confidence            468999999985

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.96  E-value=1.4e-05  Score=51.31  Aligned_cols=79  Identities=19%  Similarity=0.221  Sum_probs=52.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .++.++||+||+||+|...++.....|++|+.+++++++.+... ++     +.....   |-.+.  ....+..  ..-
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~-~l-----Ga~~vi---~~~~~--~~~~~~~--~~~   96 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VL-----GAKEVL---AREDV--MAERIRP--LDK   96 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HT-----TCSEEE---ECC-------------CCS
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH-hc-----ccceee---ecchh--HHHHHHH--hhc
Confidence            45789999999999999999988888999999999888755433 22     333222   22211  1122221  123


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +++|+++.+.|-
T Consensus        97 ~gvD~vid~vgg  108 (176)
T d1xa0a2          97 QRWAAAVDPVGG  108 (176)
T ss_dssp             CCEEEEEECSTT
T ss_pred             cCcCEEEEcCCc
Confidence            579999999984

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.90  E-value=3.8e-05  Score=48.49  Aligned_cols=80  Identities=16%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+.+++|+|+++++|...++.+...|+ +|+++++++++.+...+ +     +...   ..|.++.+..+.+.+..  .-
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~-----Ga~~---~i~~~~~~~~~~~~~~~--~~   95 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-A-----GADY---VINASMQDPLAEIRRIT--ES   95 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-H-----TCSE---EEETTTSCHHHHHHHHT--TT
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-c-----CCce---eeccCCcCHHHHHHHHh--hc
Confidence            578999999999999999998888885 89999998776554332 2     3322   22444444444443332  12


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +.+|+++.++|.
T Consensus        96 ~~~d~vid~~g~  107 (170)
T d1jvba2          96 KGVDAVIDLNNS  107 (170)
T ss_dssp             SCEEEEEESCCC
T ss_pred             ccchhhhccccc
Confidence            458999999985

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=1e-05  Score=49.24  Aligned_cols=73  Identities=15%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |.++|.|+ |.+|+.+++.|.+.|.+|++++.+++..+++.    ..  +  ...+.+|.++++.++++-      ..+.
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----~~--~--~~~~~gd~~~~~~l~~a~------i~~a   65 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY--A--THAVIANATEENELLSLG------IRNF   65 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----TT--C--SEEEECCTTCTTHHHHHT------GGGC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----Hh--C--CcceeeecccchhhhccC------Cccc
Confidence            56788877 79999999999999999999999987766542    21  2  345567888877665541      1235


Q ss_pred             cEEEECcc
Q 042455          105 NILINKAG  112 (138)
Q Consensus       105 d~lv~~ag  112 (138)
                      |.+|...+
T Consensus        66 ~~vi~~~~   73 (134)
T d2hmva1          66 EYVIVAIG   73 (134)
T ss_dssp             SEEEECCC
T ss_pred             cEEEEEcC
Confidence            76666555

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=2.1e-05  Score=50.71  Aligned_cols=79  Identities=13%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCE-EEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVH-VIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++++||+||+|++|...++.....|++ |+.+++++++..++..++     +...   ..|..+++ +.+.++++.  -.
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~-----gad~---vi~~~~~~-~~~~~~~~~--~~   99 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL-----GFDA---AVNYKTGN-VAEQLREAC--PG   99 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS-----CCSE---EEETTSSC-HHHHHHHHC--TT
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc-----cceE---Eeeccchh-HHHHHHHHh--cc
Confidence            479999999999999999977778985 555666665555544433     3322   22444333 233333332  13


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      .+|+++.+.|-
T Consensus       100 GvDvv~D~vGg  110 (187)
T d1vj1a2         100 GVDVYFDNVGG  110 (187)
T ss_dssp             CEEEEEESSCH
T ss_pred             CceEEEecCCc
Confidence            69999999973

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=2e-05  Score=53.57  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=46.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      +|||||+|-||..++++|+++|+ .|+++++-......  ..+..    ..    .+|..+.+........ ...+..++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~--~~~~~----~~----~~~~~~~~~~~~~~~~-~~~~~~~~   70 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VNLVD----LN----IADYMDKEDFLIQIMA-GEEFGDVE   70 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG--HHHHT----SC----CSEEEEHHHHHHHHHT-TCCCSSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh--hcccc----cc----hhhhccchHHHHHHhh-hhcccchh
Confidence            79999999999999999999997 68777643221111  11111    11    2233333332222211 23456789


Q ss_pred             EEEECcccCC
Q 042455          106 ILINKAGICG  115 (138)
Q Consensus       106 ~lv~~ag~~~  115 (138)
                      ++++.|+...
T Consensus        71 ~i~~~aa~~~   80 (307)
T d1eq2a_          71 AIFHEGACSS   80 (307)
T ss_dssp             EEEECCSCCC
T ss_pred             hhhhhccccc
Confidence            9999988643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.75  E-value=0.00019  Score=44.36  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=36.9

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      +..-|++.|+|+.|.+|..+++.|.+.|++|.+.+|+.....+
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~   48 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE   48 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc
Confidence            3455789999999999999999999999999999998765443

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.71  E-value=2.2e-05  Score=50.20  Aligned_cols=81  Identities=16%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      .++++|.++|.|+ ||.+++++..|.+.| +|.++.|+.++++++...+...........+..+            .+..
T Consensus        14 ~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~------------~~~~   79 (177)
T d1nvta1          14 GRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS------------GLDV   79 (177)
T ss_dssp             CCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE------------CTTC
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhh------------hhhh
Confidence            4588999999988 588999999997766 9999999999998888777544322111111110            1112


Q ss_pred             cCCCccEEEECcccC
Q 042455          100 RALPLNILINKAGIC  114 (138)
Q Consensus       100 ~~~~id~lv~~ag~~  114 (138)
                      .....|++||+....
T Consensus        80 ~~~~~dliIn~tp~g   94 (177)
T d1nvta1          80 DLDGVDIIINATPIG   94 (177)
T ss_dssp             CCTTCCEEEECSCTT
T ss_pred             ccchhhhhccCCccc
Confidence            235689999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=0.00024  Score=44.65  Aligned_cols=77  Identities=16%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -.|.+++|.|+ |++|...++.+...|++|+++++++++.+... ++     +........+-.+      ..   ....
T Consensus        26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-~l-----Ga~~~i~~~~~~~------~~---~~~~   89 (168)
T d1piwa2          26 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KM-----GADHYIATLEEGD------WG---EKYF   89 (168)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HH-----TCSEEEEGGGTSC------HH---HHSC
T ss_pred             CCCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhh-cc-----CCcEEeeccchHH------HH---Hhhh
Confidence            35889999987 89999988877778999999999988876533 33     4332221122111      11   1233


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                      +.+|.++.++|..
T Consensus        90 ~~~d~vi~~~~~~  102 (168)
T d1piwa2          90 DTFDLIVVCASSL  102 (168)
T ss_dssp             SCEEEEEECCSCS
T ss_pred             cccceEEEEecCC
Confidence            5789999887754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.66  E-value=0.00034  Score=44.45  Aligned_cols=81  Identities=19%  Similarity=0.205  Sum_probs=53.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      -.|.+++|+|+ |++|...++.+...|+ +|+++++++++++-.. ++     +....+-.-|-.+  ..+.+.+..  .
T Consensus        28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak-~~-----GA~~~in~~~~~~--~~~~~~~~~--~   96 (176)
T d1d1ta2          28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM-AV-----GATECISPKDSTK--PISEVLSEM--T   96 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HH-----TCSEEECGGGCSS--CHHHHHHHH--H
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHH-hc-----CCcEEECccccch--HHHHHHHHh--c
Confidence            35889999986 8999999999999996 8999999999877433 33     4433332222211  122222222  2


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      ...+|++|.+.|.
T Consensus        97 g~G~d~vi~~~g~  109 (176)
T d1d1ta2          97 GNNVGYTFEVIGH  109 (176)
T ss_dssp             TSCCCEEEECSCC
T ss_pred             cccceEEEEeCCc
Confidence            2468999999884

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.64  E-value=0.00032  Score=43.86  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHH--------HhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI--------VMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l--------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +.|.|. |.+|.++|+.|.+.|++|++.+|+++..+...+.-        .+.....++.++.+   ....++++++++.
T Consensus         3 I~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~l~   78 (165)
T d2f1ka2           3 IGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEKLI   78 (165)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHHHG
T ss_pred             EEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhhhh
Confidence            566766 89999999999999999999999987766543311        01111344555443   3567888898887


Q ss_pred             hcCCCccEEEECccc
Q 042455           99 ARALPLNILINKAGI  113 (138)
Q Consensus        99 ~~~~~id~lv~~ag~  113 (138)
                      ....+=.+++..++.
T Consensus        79 ~~l~~~~iv~~~~s~   93 (165)
T d2f1ka2          79 PHLSPTAIVTDVASV   93 (165)
T ss_dssp             GGSCTTCEEEECCSC
T ss_pred             hhcccccceeecccc
Confidence            766666666666554

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.0003  Score=46.54  Aligned_cols=78  Identities=18%  Similarity=0.236  Sum_probs=54.6

Q ss_pred             CCCCCEEEEeCC----------------CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           21 DAAGVTAIVTGA----------------SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        21 ~~~~k~~litG~----------------~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      ++.|+++|||+|                +|-.|.++|+.+...|++|.++......          .. ...+..  ..+
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~----------~~-p~~~~~--~~~   69 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL----------PT-PPFVKR--VDV   69 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC----------CC-CTTEEE--EEC
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc----------Cc-cccccc--cee
Confidence            688999999865                3569999999999999999888765422          01 122333  344


Q ss_pred             CCHHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           85 SSLASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      ...+++...+.+..   ...|++|.+|++.
T Consensus        70 ~t~~~m~~~~~~~~---~~~D~~i~aAAvs   96 (223)
T d1u7za_          70 MTALEMEAAVNASV---QQQNIFIGCAAVA   96 (223)
T ss_dssp             CSHHHHHHHHHHHG---GGCSEEEECCBCC
T ss_pred             hhhHHHHHHHHhhh---ccceeEeeeechh
Confidence            56666666655544   3569999999986

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.63  E-value=0.00018  Score=45.51  Aligned_cols=80  Identities=19%  Similarity=0.196  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|.+++|.|+ +|+|...+..+...|+ +|+++++++++.+...+ +     +........+-  .+.+....+...  .
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~-~-----Ga~~~i~~~~~--~~~~~~~~~~~~--~   96 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-V-----GATECVNPQDY--KKPIQEVLTEMS--N   96 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T-----TCSEEECGGGC--SSCHHHHHHHHT--T
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH-h-----CCeeEEecCCc--hhHHHHHHHHHh--c
Confidence            5789999999 6899999999999986 89999999888664332 2     33222211121  223444444432  2


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      +.+|++|.+.|.
T Consensus        97 ~G~D~vid~~G~  108 (176)
T d2jhfa2          97 GGVDFSFEVIGR  108 (176)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCCEEEecCCc
Confidence            578999999885

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.62  E-value=0.0011  Score=40.94  Aligned_cols=79  Identities=19%  Similarity=0.248  Sum_probs=56.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCC--CCeeEEEEecCCCHHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNP--AAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ..++++.|+|+ |.+|..+|..++..|.  ++++++++++.++....++.....  ...+.....|.             
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------------   69 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------------   69 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------------
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------------
Confidence            45678888997 8999999999999874  799999998887766666654321  22333333332             


Q ss_pred             HhcCCCccEEEECcccCC
Q 042455           98 TARALPLNILINKAGICG  115 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~  115 (138)
                       +....-|++|..+|...
T Consensus        70 -~~l~daDvvvitag~~~   86 (148)
T d1ldna1          70 -DDCRDADLVVICAGANQ   86 (148)
T ss_dssp             -GGTTTCSEEEECCSCCC
T ss_pred             -HHhccceeEEEeccccc
Confidence             12335699999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.61  E-value=0.00054  Score=42.74  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=34.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      -.+.+++|.|+ |++|...++.+...|++|+++++++++.+.
T Consensus        26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~   66 (166)
T d1llua2          26 RPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLEL   66 (166)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHh
Confidence            35789999886 899999988877889999999999877654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00035  Score=43.83  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=52.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      -.|.+++|.|+ |++|...++.+...|++++++++++++.+. ..++     +...   ..|..+.+...       ...
T Consensus        29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~-a~~l-----Gad~---~i~~~~~~~~~-------~~~   91 (168)
T d1uufa2          29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKAL-----GADE---VVNSRNADEMA-------AHL   91 (168)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHH-----TCSE---EEETTCHHHHH-------TTT
T ss_pred             CCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHH-Hhcc-----CCcE---EEECchhhHHH-------Hhc
Confidence            35889999986 899999998888889998899988877543 3344     3322   23555544321       223


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.++|.
T Consensus        92 ~~~D~vid~~g~  103 (168)
T d1uufa2          92 KSFDFILNTVAA  103 (168)
T ss_dssp             TCEEEEEECCSS
T ss_pred             CCCceeeeeeec
Confidence            478999999985

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.57  E-value=9.7e-05  Score=46.99  Aligned_cols=79  Identities=15%  Similarity=0.097  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|.+++|.|+ |++|...++.+...|+ +|+++++++++.+.. +++     +...   .+|..+.+..+.+.+..  ..
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~l-----Ga~~---~i~~~~~~~~~~v~~~t--~g   94 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFY-----GATD---ILNYKNGHIEDQVMKLT--NG   94 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHH-----TCSE---EECGGGSCHHHHHHHHT--TT
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHH-Hhh-----Cccc---cccccchhHHHHHHHHh--hc
Confidence            5788999986 8999999988888898 799999988775543 233     3321   23443333333332221  12


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.++|.
T Consensus        95 ~G~D~vid~~g~  106 (174)
T d1jqba2          95 KGVDRVIMAGGG  106 (174)
T ss_dssp             SCEEEEEECSSC
T ss_pred             cCcceEEEccCC
Confidence            359999999985

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.57  E-value=0.00049  Score=43.35  Aligned_cols=42  Identities=24%  Similarity=0.240  Sum_probs=36.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~   66 (138)
                      +|++.|.|+ |.+|.++|..|++.|++|.+.+|+++..+....
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~   42 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD   42 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            478999999 799999999999999999999999877666543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.56  E-value=5e-05  Score=48.19  Aligned_cols=42  Identities=29%  Similarity=0.435  Sum_probs=36.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+.++||+||+||+|...++.....|++|+.+.+++++.+.+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~   64 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL   64 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH
Confidence            466899999999999999987777899999999998886654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=9.3e-05  Score=47.32  Aligned_cols=42  Identities=24%  Similarity=0.354  Sum_probs=36.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .++++||+||+||+|...++..-..|++|+.+++++++.+.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~   72 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence            456899999999999999998888899999999998886544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.00028  Score=43.60  Aligned_cols=76  Identities=17%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLN  105 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id  105 (138)
                      .++|.|. +.+|..+++.|.++|.+++++..+++...+...++..    ..+.++..|.++++.++++      ...+.+
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a------~i~~a~   73 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKA------GIDRCR   73 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHH------TTTTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHh------ccccCC
Confidence            4666776 7999999999999999999999988776665555432    3467888999988776554      223567


Q ss_pred             EEEECcc
Q 042455          106 ILINKAG  112 (138)
Q Consensus       106 ~lv~~ag  112 (138)
                      .+|...+
T Consensus        74 ~vi~~~~   80 (153)
T d1id1a_          74 AILALSD   80 (153)
T ss_dssp             EEEECSS
T ss_pred             EEEEccc
Confidence            7776654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.47  E-value=0.00031  Score=44.40  Aligned_cols=79  Identities=16%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ..|.+++|.|+ |++|...++.+...|+ .|+++++++++.+... ++     +.. .+  .|..+.+..+ .+.++.  
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~-----Ga~-~~--i~~~~~~~~~-~i~~~t--   93 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL-----GAT-HV--INSKTQDPVA-AIKEIT--   93 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH-----TCS-EE--EETTTSCHHH-HHHHHT--
T ss_pred             CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-Hc-----CCe-EE--EeCCCcCHHH-HHHHHc--
Confidence            35788999987 8999999988878888 4566777776655432 33     322 12  3444433222 233322  


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      -+.+|++|.++|.
T Consensus        94 ~gg~D~vid~~G~  106 (174)
T d1f8fa2          94 DGGVNFALESTGS  106 (174)
T ss_dssp             TSCEEEEEECSCC
T ss_pred             CCCCcEEEEcCCc
Confidence            2479999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.44  E-value=0.00019  Score=42.34  Aligned_cols=41  Identities=10%  Similarity=0.200  Sum_probs=35.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA   60 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~   60 (138)
                      .++++||+++|+|+ |.+|.+-++.|++.|++|.+++.....
T Consensus         7 ~l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~   47 (113)
T d1pjqa1           7 FCQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIP   47 (113)
T ss_dssp             EECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCH
T ss_pred             EEEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCCh
Confidence            45789999999999 579999999999999999988775543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.42  E-value=0.00098  Score=42.10  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=60.0

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH---------------HHhcCCCCeeEEEEecCCCHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA---------------IVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~---------------l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      +++-++|- |.+|..+|+.|++.|++|++.+|++++.+++..+               +....  .....+...+.+.+.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ii~~~~~~~~   79 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKL--KKPRRIILLVKAGQA   79 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHB--CSSCEEEECSCTTHH
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhh--cccceEEEecCchHH
Confidence            45778887 7999999999999999999999999887765432               11111  112233344556677


Q ss_pred             HHHHHHHHHhcCCCccEEEECccc
Q 042455           90 VRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        90 ~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      +..+++.+.....+=+++|.....
T Consensus        80 v~~v~~~l~~~~~~g~iiid~sT~  103 (176)
T d2pgda2          80 VDNFIEKLVPLLDIGDIIIDGGNS  103 (176)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSCC
T ss_pred             HHHHHHHHHhccccCcEEEecCcc
Confidence            777787777666556777777654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.40  E-value=0.00015  Score=45.84  Aligned_cols=45  Identities=18%  Similarity=0.333  Sum_probs=39.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l   68 (138)
                      .+|.++|.|+ ||.+++++..|.+.|+ ++.++.|+.++++.+...+
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            5788999988 7999999999999997 7999999999888776654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.39  E-value=0.00091  Score=41.22  Aligned_cols=78  Identities=10%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      +++++.|+|+ |.+|..+|..|+.+|  .+|+++++++++++....++.... ..........|.   +           
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~-----------   68 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S-----------   68 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G-----------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H-----------
Confidence            3557888896 899999999999987  389999999887776666664321 122233334442   1           


Q ss_pred             cCCCccEEEECcccCC
Q 042455          100 RALPLNILINKAGICG  115 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~  115 (138)
                      ....-|++|..+|...
T Consensus        69 ~~~~adivvitag~~~   84 (146)
T d1ez4a1          69 DCKDADLVVITAGAPQ   84 (146)
T ss_dssp             GGTTCSEEEECCCC--
T ss_pred             HhccccEEEEeccccc
Confidence            1235699999999753

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=0.0012  Score=41.25  Aligned_cols=82  Identities=15%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCC--CCeeEEEEecCCCHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNP--AAKVDVMELDLSSLASVRKFA   94 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~   94 (138)
                      ...++..++.|+|+ |.+|..+|..|+..|.  ++++++++++.++....+|.....  +........|..         
T Consensus        14 ~~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~---------   83 (159)
T d2ldxa1          14 EDKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN---------   83 (159)
T ss_dssp             CCCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG---------
T ss_pred             cccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh---------
Confidence            33455667888896 8999999999999875  799999998887777777754321  122222233321         


Q ss_pred             HHHHhcCCCccEEEECcccCC
Q 042455           95 SDFTARALPLNILINKAGICG  115 (138)
Q Consensus        95 ~~~~~~~~~id~lv~~ag~~~  115 (138)
                           ....-|++|..+|...
T Consensus        84 -----~~~~adivvitag~~~   99 (159)
T d2ldxa1          84 -----VSANSKLVIITAGARM   99 (159)
T ss_dssp             -----GGTTEEEEEECCSCCC
T ss_pred             -----hhccccEEEEeccccc
Confidence                 2245799999999764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.33  E-value=0.0012  Score=41.74  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHH-HHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA-SVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~   99 (138)
                      ..|.+++|.|+ |++|...++.+...|+ +|+++++++++++...+ +     +....   .|.++.+ .+.......  
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-l-----Ga~~~---i~~~~~d~~~~~~~~~~--   93 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-L-----GATEC---LNPKDYDKPIYEVICEK--   93 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-T-----TCSEE---ECGGGCSSCHHHHHHHH--
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-c-----CCcEE---EcCCCchhHHHHHHHHh--
Confidence            45889999986 8999999999988897 79999999888765432 2     33222   2322211 122333322  


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                      .-+.+|++|.++|.
T Consensus        94 ~~~G~d~vid~~g~  107 (174)
T d1p0fa2          94 TNGGVDYAVECAGR  107 (174)
T ss_dssp             TTSCBSEEEECSCC
T ss_pred             cCCCCcEEEEcCCC
Confidence            22468888888885

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.32  E-value=0.00068  Score=42.63  Aligned_cols=78  Identities=19%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+.+++|.|+ |++|...++.+...|+ .|+++++++++.+...+ +     +.. .+  .|.. .+.++...+..  ..
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-~-----ga~-~~--i~~~-~~~~~~~~~~~--~~   98 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-L-----GAD-HV--VDAR-RDPVKQVMELT--RG   98 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-T-----TCS-EE--EETT-SCHHHHHHHHT--TT
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-c-----ccc-ee--ecCc-ccHHHHHHHhh--CC
Confidence            4789999886 8999999998888886 67778888766554332 1     222 12  2332 23344444322  22


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      ..+|++|.++|.
T Consensus        99 ~g~d~vid~~g~  110 (172)
T d1h2ba2          99 RGVNVAMDFVGS  110 (172)
T ss_dssp             CCEEEEEESSCC
T ss_pred             CCceEEEEecCc
Confidence            359999999985

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00017  Score=41.05  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=33.4

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      +++||+++|.|. |.-|+++|+.|.++|++|.+.+.+..
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            578999999999 56799999999999999999988654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.28  E-value=0.0013  Score=40.40  Aligned_cols=77  Identities=18%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcc--hhHHHHHHHHhc----CCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMA--AGRDVKVAIVMQ----NPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~--~~~~~~~~l~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      ++.|+||+|.+|..+|..++.++.  +++++++++.  +++....++...    ....++.....+  +.          
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~----------   69 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NL----------   69 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CG----------
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hH----------
Confidence            478999999999999999999884  8999998764  334444444431    112222222221  11          


Q ss_pred             HhcCCCccEEEECcccCC
Q 042455           98 TARALPLNILINKAGICG  115 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~  115 (138)
                       +....-|++|.+||...
T Consensus        70 -~~l~~aDvVVitAG~~~   86 (145)
T d1hyea1          70 -RIIDESDVVIITSGVPR   86 (145)
T ss_dssp             -GGGTTCSEEEECCSCCC
T ss_pred             -HHhccceEEEEeccccc
Confidence             12235799999999754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.27  E-value=0.00078  Score=41.54  Aligned_cols=76  Identities=18%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQN--PAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      |++.|+|+ |.+|..+|..|+.+|.  ++++++.++++++....++....  ..........|.   +           .
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~---~-----------~   66 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW---A-----------A   66 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG---G-----------G
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH---H-----------H
Confidence            67778895 8999999999999874  89999999888776666665331  122333333332   1           1


Q ss_pred             CCCccEEEECcccCC
Q 042455          101 ALPLNILINKAGICG  115 (138)
Q Consensus       101 ~~~id~lv~~ag~~~  115 (138)
                      ...-|++|..||..+
T Consensus        67 l~~adiVVitaG~~~   81 (146)
T d1hyha1          67 LADADVVISTLGNIK   81 (146)
T ss_dssp             GTTCSEEEECCSCGG
T ss_pred             hccccEEEEeccccc
Confidence            234699999999753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.26  E-value=0.0013  Score=41.28  Aligned_cols=80  Identities=15%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC-CHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS-SLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~   99 (138)
                      -.|.+++|.|+ +|+|...++.+...|+ +|+++++++++.+. .+++     +....+   |.. +.+.+.+.+.... 
T Consensus        27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~l-----Ga~~~i---~~~~~~~~~~~~~~~~~-   95 (176)
T d2fzwa2          27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEF-----GATECI---NPQDFSKPIQEVLIEMT-   95 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHH-----TCSEEE---CGGGCSSCHHHHHHHHT-
T ss_pred             CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHh-----CCcEEE---eCCchhhHHHHHHHHHc-
Confidence            35889999988 5999999998888897 67777777777543 4444     332221   222 1233444444432 


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                       .+.+|++|.++|.
T Consensus        96 -~~g~D~vid~~G~  108 (176)
T d2fzwa2          96 -DGGVDYSFECIGN  108 (176)
T ss_dssp             -TSCBSEEEECSCC
T ss_pred             -CCCCcEeeecCCC
Confidence             2469999999984

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.22  E-value=0.00063  Score=43.89  Aligned_cols=80  Identities=21%  Similarity=0.213  Sum_probs=51.7

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      -.|.+++|.|+ +++|...+......|+ +|+++++++++++... ++     +...   ..|-.+.+..+++.+ + ..
T Consensus        24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~-~~-----Ga~~---~~~~~~~~~~~~i~~-~-t~   91 (195)
T d1kola2          24 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQ-----GFEI---ADLSLDTPLHEQIAA-L-LG   91 (195)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT-----TCEE---EETTSSSCHHHHHHH-H-HS
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhh-hc-----cccE---EEeCCCcCHHHHHHH-H-hC
Confidence            35889999986 7999888888777787 7899999887765432 22     3322   123333333333333 2 23


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      -..+|++|.+.|.
T Consensus        92 g~g~D~vid~vG~  104 (195)
T d1kola2          92 EPEVDCAVDAVGF  104 (195)
T ss_dssp             SSCEEEEEECCCT
T ss_pred             CCCcEEEEECccc
Confidence            3469999999984

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.21  E-value=0.00059  Score=42.02  Aligned_cols=77  Identities=17%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      ++.|+||+|.+|.++|..|+.+|.  ++++++.++.+.+  ..++...   ........-+ ...+....+       ..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~--a~Dl~~~---~~~~~~~~~~-~~~~~~~~~-------~~   68 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV--AADLSHI---ETRATVKGYL-GPEQLPDCL-------KG   68 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH--HHHHTTS---SSSCEEEEEE-SGGGHHHHH-------TT
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh--hHHHhhh---hhhcCCCeEE-cCCChHHHh-------CC
Confidence            578999999999999999998885  7999998765433  3344322   1111112112 122222222       24


Q ss_pred             ccEEEECcccCC
Q 042455          104 LNILINKAGICG  115 (138)
Q Consensus       104 id~lv~~ag~~~  115 (138)
                      -|++|..+|...
T Consensus        69 aDivVitag~~~   80 (144)
T d1mlda1          69 CDVVVIPAGVPR   80 (144)
T ss_dssp             CSEEEECCSCCC
T ss_pred             CCEEEECCCcCC
Confidence            699999999754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.20  E-value=8.4e-05  Score=48.52  Aligned_cols=42  Identities=21%  Similarity=0.392  Sum_probs=36.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      ++.||+++|.| .|.+|..+|+.|.+.|++|++++.+.+....
T Consensus        24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~   65 (201)
T d1c1da1          24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAH   65 (201)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHH
Confidence            68999999987 4789999999999999999999988766554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.20  E-value=0.001  Score=41.19  Aligned_cols=78  Identities=14%  Similarity=0.019  Sum_probs=47.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC---------EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV---------HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~---------~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ++.|+||+|.+|..++..|+..+.         +++...++.+..+....++..... .....+...-.+.         
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------   75 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPK---------   75 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHH---------
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchh---------
Confidence            789999999999999999997642         122223344455555555544321 2233333322211         


Q ss_pred             HHhcCCCccEEEECcccCC
Q 042455           97 FTARALPLNILINKAGICG  115 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~  115 (138)
                        +.+..-|++|..+|...
T Consensus        76 --~~~~~advViitaG~~~   92 (154)
T d1y7ta1          76 --VAFKDADYALLVGAAPR   92 (154)
T ss_dssp             --HHTTTCSEEEECCCCCC
T ss_pred             --hhcccccEEEeecCcCC
Confidence              12346799999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00062  Score=43.83  Aligned_cols=39  Identities=23%  Similarity=0.263  Sum_probs=34.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      |++.|.|+ |-+|..+|..++..|++|++.+++++.++..
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHH
Confidence            68889999 7899999999999999999999998765543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.18  E-value=0.0045  Score=38.97  Aligned_cols=80  Identities=20%  Similarity=0.197  Sum_probs=52.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC-HHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS-LASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~   99 (138)
                      -.|.+++|.|+ |+||...++.+...|+ +|+++++++++.+. .+++     +.... +  |..+ .+......+... 
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~-a~~~-----Ga~~~-i--~~~~~~~~~~~~~~~~~-   95 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPK-AKAL-----GATDC-L--NPRELDKPVQDVITELT-   95 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHT-----TCSEE-E--CGGGCSSCHHHHHHHHH-
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHH-HHHh-----CCCcc-c--CCccchhhhhhhHhhhh-
Confidence            35789999975 9999999999999998 68888988877543 2222     33222 1  2211 123333333332 


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                       .+.+|++|.++|.
T Consensus        96 -~~G~d~vie~~G~  108 (174)
T d1e3ia2          96 -AGGVDYSLDCAGT  108 (174)
T ss_dssp             -TSCBSEEEESSCC
T ss_pred             -cCCCcEEEEeccc
Confidence             3579999999985

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.14  E-value=0.0066  Score=38.34  Aligned_cols=79  Identities=14%  Similarity=-0.055  Sum_probs=48.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC---CC----EEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALR---GV----HVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~---g~----~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      -++.||||+|.||..++..|++.   |.    .+.+.+.+..  .++....++........-.....+  +.        
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~--~~--------   94 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGI--DP--------   94 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEES--CH--------
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccc--cc--------
Confidence            46999999999999999999974   32    4566666543  345555555444211111111111  11        


Q ss_pred             HHHhcCCCccEEEECcccCC
Q 042455           96 DFTARALPLNILINKAGICG  115 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~~  115 (138)
                        .+.+...|++|..+|...
T Consensus        95 --~~~~~~aDvVvi~ag~~r  112 (175)
T d7mdha1          95 --YEVFEDVDWALLIGAKPR  112 (175)
T ss_dssp             --HHHTTTCSEEEECCCCCC
T ss_pred             --hhhccCCceEEEeeccCC
Confidence              123346899999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.12  E-value=0.0021  Score=40.25  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHH-HHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLA-SVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~   99 (138)
                      ..+.+++|.|+ +++|...+..+...|+ +|+++++++++.+... ++     +....+   |..+.+ ..+....... 
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~-----GAd~~i---n~~~~~~~~~~~~~~~~-   95 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF-----GATDFV---NPNDHSEPISQVLSKMT-   95 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TCCEEE---CGGGCSSCHHHHHHHHH-
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH-Hc-----CCcEEE---cCCCcchhHHHHHHhhc-
Confidence            35788999986 6788888888888876 7899999988865533 22     332222   332222 1233333322 


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                       -+.+|+++.++|.
T Consensus        96 -~~G~d~vid~~G~  108 (175)
T d1cdoa2          96 -NGGVDFSLECVGN  108 (175)
T ss_dssp             -TSCBSEEEECSCC
T ss_pred             -cCCcceeeeecCC
Confidence             2478999999985

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.12  E-value=0.001  Score=41.31  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=53.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQN--PAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      +..+.+++.|+|+ |.+|..+|..++..+. ++++++.+++.++....++....  .+........+  +.++   .   
T Consensus         3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~--~~~~---~---   73 (154)
T d1pzga1           3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEY--SYEA---A---   73 (154)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEEC--SHHH---H---
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccC--chhh---h---
Confidence            3445678888997 8999999998888885 89999999888776666654321  01111111111  1211   1   


Q ss_pred             HHhcCCCccEEEECcccCC
Q 042455           97 FTARALPLNILINKAGICG  115 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~  115 (138)
                      +    ..-|++|..+|..+
T Consensus        74 ~----~~adiVvitag~~~   88 (154)
T d1pzga1          74 L----TGADCVIVTAGLTK   88 (154)
T ss_dssp             H----TTCSEEEECCSCSS
T ss_pred             h----cCCCeEEEeccccc
Confidence            1    24699999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.11  E-value=0.0048  Score=38.45  Aligned_cols=79  Identities=11%  Similarity=0.109  Sum_probs=55.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQN--PAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.++++.|+|+ |.+|..++..|+.+|.  ++++++++++.++....++....  ..........|.   +.        
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~---~~--------   85 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY---SV--------   85 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG---GG--------
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch---hh--------
Confidence            45668888896 8999999999999985  79999999888777666665321  112222222232   21        


Q ss_pred             HhcCCCccEEEECcccCC
Q 042455           98 TARALPLNILINKAGICG  115 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~  115 (138)
                         ...-|++|..||...
T Consensus        86 ---~~~adiVVitAg~~~  100 (160)
T d1i0za1          86 ---TANSKIVVVTAGVRQ  100 (160)
T ss_dssp             ---GTTCSEEEECCSCCC
T ss_pred             ---cccccEEEEecCCcc
Confidence               235699999999764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0021  Score=42.61  Aligned_cols=63  Identities=19%  Similarity=0.319  Sum_probs=50.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+++++|.|+ ||+|..+++.|+..|. ++.+++.+                   ..+.+.+.+.+....|...+..+.
T Consensus        28 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~  106 (247)
T d1jw9b_          28 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  106 (247)
T ss_dssp             HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence            67889999996 7999999999999998 89998763                   246677778888888877777766


Q ss_pred             ecCC
Q 042455           82 LDLS   85 (138)
Q Consensus        82 ~D~~   85 (138)
                      ..++
T Consensus       107 ~~~~  110 (247)
T d1jw9b_         107 ALLD  110 (247)
T ss_dssp             SCCC
T ss_pred             hhhh
Confidence            5544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.01  E-value=0.0015  Score=41.74  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=67.1

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH-------HHHhcCCCCeeEEEEecCCCHHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV-------AIVMQNPAAKVDVMELDLSSLASV   90 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~-------~l~~~~~~~~~~~~~~D~~~~~~~   90 (138)
                      ...++.++++.|.|. |.||+++++.+...|.+|+..++..........       .+........+..+.+.+++..  
T Consensus        38 ~~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T--  114 (188)
T d2naca1          38 HAYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPET--  114 (188)
T ss_dssp             TCCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTT--
T ss_pred             cceeccccceeeccc-cccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccc--
Confidence            345688999999987 699999999999999999999885432211110       1112222466778888887532  


Q ss_pred             HHHHHH-HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcc
Q 042455           91 RKFASD-FTARALPLNILINKAGICGTPFMLSKDNIELHFATNH  133 (138)
Q Consensus        91 ~~~~~~-~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~  133 (138)
                      +.++.+ ..+.+ +-+.++.|++..   .-++++.+.+.++.+-
T Consensus       115 ~~li~~~~l~~m-k~ga~lIN~aRG---~ivd~~aL~~aL~~g~  154 (188)
T d2naca1         115 EHMINDETLKLF-KRGAYIVNTARG---KLCDRDAVARALESGR  154 (188)
T ss_dssp             TTCBSHHHHTTS-CTTEEEEECSCG---GGBCHHHHHHHHHTTS
T ss_pred             hhhhHHHHHHhC-CCCCEEEecCch---hhhhHHHHHHHHhCCC
Confidence            222221 22222 456677777642   2356666666665543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.98  E-value=0.0029  Score=40.34  Aligned_cols=40  Identities=25%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK   65 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   65 (138)
                      |++.|.|+ |-+|..+|..++..|++|.+.+++++.++...
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~   44 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGL   44 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhh
Confidence            46888988 78999999999999999999999987655543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.97  E-value=0.008  Score=36.48  Aligned_cols=76  Identities=20%  Similarity=0.207  Sum_probs=49.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQN--PAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++.|+|+ |.+|..++..++..+.  ++++++.++++++.....+....  ..........+  +.+           .+
T Consensus         2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~--~~~-----------~~   67 (142)
T d1guza1           2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSN--DYA-----------DT   67 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEES--CGG-----------GG
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecC--CHH-----------Hh
Confidence            3667796 8999999999999874  89999999887665554443221  01222222221  221           12


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                      ..-|++|..+|...
T Consensus        68 ~dadvvvitag~~~   81 (142)
T d1guza1          68 ANSDIVIITAGLPR   81 (142)
T ss_dssp             TTCSEEEECCSCCC
T ss_pred             cCCeEEEEEEecCC
Confidence            35799999999754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00036  Score=43.05  Aligned_cols=39  Identities=10%  Similarity=0.185  Sum_probs=33.9

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ..+.++||++||+|| |.+|..-++.|++.|++|.+++..
T Consensus         7 l~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           7 LAHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             hheeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            345689999999999 579999999999999999988653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.91  E-value=0.0011  Score=42.90  Aligned_cols=101  Identities=12%  Similarity=0.070  Sum_probs=62.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH-------HHHHHhcCCCCeeEEEEecCCCHHHH--
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV-------KVAIVMQNPAAKVDVMELDLSSLASV--   90 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~-------~~~l~~~~~~~~~~~~~~D~~~~~~~--   90 (138)
                      .++.||++.|.|. |.||+.+|+.+..-|++|+..++........       ..++..   ...+..+.+.++....-  
T Consensus        39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~---~sDii~~~~plt~~T~~li  114 (197)
T d1j4aa1          39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYK---QADVISLHVPDVPANVHMI  114 (197)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHH---HCSEEEECSCCCGGGTTCB
T ss_pred             ccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccccccccceeeecccccccc---ccccccccCCccccccccc
Confidence            4578999999988 6999999999999999999988754432111       112221   35677777777643211  


Q ss_pred             -HHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhc
Q 042455           91 -RKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATN  132 (138)
Q Consensus        91 -~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n  132 (138)
                       ++.++..     +-+.++.|+|...   -++++.+.+.++.+
T Consensus       115 ~~~~l~~m-----k~~a~lIN~sRG~---ivde~aL~~aL~~~  149 (197)
T d1j4aa1         115 NDESIAKM-----KQDVVIVNVSRGP---LVDTDAVIRGLDSG  149 (197)
T ss_dssp             SHHHHHHS-----CTTEEEEECSCGG---GBCHHHHHHHHHHT
T ss_pred             cHHHHhhh-----CCccEEEecCchh---hhhhHHHHHHHhcc
Confidence             2333332     3456666666432   34566666655544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.0019  Score=41.20  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH--------HHHHHhcCCCCeeEEEEecCCCHHH
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV--------KVAIVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~--------~~~l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      ....+.+|++.|.|. |.||+++++.+..-|++|+..++...+....        .+++..   ..++..+.+.+++.. 
T Consensus        38 ~~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~---~sDiv~~~~Plt~~T-  112 (184)
T d1ygya1          38 SGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLA---RADFISVHLPKTPET-  112 (184)
T ss_dssp             CBCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHH---HCSEEEECCCCSTTT-
T ss_pred             ccccccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHh---hCCEEEEcCCCCchh-
Confidence            344678999999986 7999999999999999999998865432221        112222   356778888877542 


Q ss_pred             HHHHHH-HHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhcc
Q 042455           90 VRKFAS-DFTARALPLNILINKAGICGTPFMLSKDNIELHFATNH  133 (138)
Q Consensus        90 ~~~~~~-~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n~  133 (138)
                       +.++. +..+.+ +-+.++.|+|..   .-++++++.+.++.+-
T Consensus       113 -~~lin~~~l~~m-k~~a~lIN~sRG---~iVde~aL~~aL~~~~  152 (184)
T d1ygya1         113 -AGLIDKEALAKT-KPGVIIVNAARG---GLVDEAALADAITGGH  152 (184)
T ss_dssp             -TTCBCHHHHTTS-CTTEEEEECSCT---TSBCHHHHHHHHHTSS
T ss_pred             -hhhhhHHHHhhh-CCCceEEEecch---hhhhhHHHHHHHhcCc
Confidence             22232 122222 456777777753   2356666666666553

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00047  Score=49.77  Aligned_cols=81  Identities=19%  Similarity=0.253  Sum_probs=59.2

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVME   81 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   81 (138)
                      +.+.++||+|+ ||||.++++.|+..|. ++.+++.+                   ..+++.+.+.++...|..++..+.
T Consensus        35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            45668999999 6899999999999998 79998763                   235666777788888888888888


Q ss_pred             ecCCCHHHHHHHHHHHHhcCCCccEEEECcc
Q 042455           82 LDLSSLASVRKFASDFTARALPLNILINKAG  112 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag  112 (138)
                      .++.+...  .++       ...|++|.+..
T Consensus       114 ~~i~~~~~--~~~-------~~~DlVi~~~D  135 (426)
T d1yovb1         114 NKIQDFND--TFY-------RQFHIIVCGLD  135 (426)
T ss_dssp             SCGGGBCH--HHH-------TTCSEEEECCS
T ss_pred             ccccchHH--HHH-------HhcchheeccC
Confidence            77754321  122       24688776643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.0068  Score=36.77  Aligned_cols=76  Identities=16%  Similarity=0.308  Sum_probs=50.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCC-CCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNP-AAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++.|+|+ |.+|..++..++.++.  ++++++.++++++....++....+ .........|.   +.           ..
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~---~~-----------~~   66 (140)
T d1a5za1           2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY---AD-----------LK   66 (140)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG---GG-----------GT
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH---HH-----------hc
Confidence            3566786 8999999999998874  899999998877666655543221 12233333332   11           23


Q ss_pred             CccEEEECcccCCC
Q 042455          103 PLNILINKAGICGT  116 (138)
Q Consensus       103 ~id~lv~~ag~~~~  116 (138)
                      .-|++|..+|....
T Consensus        67 ~adivvitag~~~~   80 (140)
T d1a5za1          67 GSDVVIVAAGVPQK   80 (140)
T ss_dssp             TCSEEEECCCCCCC
T ss_pred             CCCEEEEecccccC
Confidence            56999999997643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.83  E-value=0.0016  Score=41.97  Aligned_cols=104  Identities=11%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH---------HHHHHHhcCCCCeeEEEEecCCCHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD---------VKVAIVMQNPAAKVDVMELDLSSLAS   89 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~---------~~~~l~~~~~~~~~~~~~~D~~~~~~   89 (138)
                      ...+.||++.|.|. |.||+.+|+.+..-|++|+..++.......         ...++..   ...+..+.+.+++...
T Consensus        44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~---~sD~i~~~~plt~~T~  119 (193)
T d1mx3a1          44 AARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLF---HSDCVTLHCGLNEHNH  119 (193)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHH---HCSEEEECCCCCTTCT
T ss_pred             ceeeeCceEEEecc-ccccccceeeeeccccceeeccCcccccchhhhccccccchhhccc---cCCEEEEeecccccch
Confidence            45689999999987 799999999999999999999886432211         1122222   3567777777764332


Q ss_pred             HHHHHHH-HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhc
Q 042455           90 VRKFASD-FTARALPLNILINKAGICGTPFMLSKDNIELHFATN  132 (138)
Q Consensus        90 ~~~~~~~-~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n  132 (138)
                        .++.. ..+. -+-+.++.|+|...   -++++.+.+.++.+
T Consensus       120 --~li~~~~l~~-mk~~a~lIN~sRG~---ivde~aL~~aL~~~  157 (193)
T d1mx3a1         120 --HLINDFTVKQ-MRQGAFLVNTARGG---LVDEKALAQALKEG  157 (193)
T ss_dssp             --TSBSHHHHTT-SCTTEEEEECSCTT---SBCHHHHHHHHHHT
T ss_pred             --hhhhHHHHhc-cCCCCeEEecCCce---EEcHHHHHHHHHcC
Confidence              22221 1122 24567777777532   34566666655544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.79  E-value=0.0083  Score=36.57  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCc--chhHHHHHHHHhcCC-CCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNM--AAGRDVKVAIVMQNP-AAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~--~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.|+|++|.+|..+|..++.++.  ++++++.+.  +.++....++....+ .........|.   ++           
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~~-----------   67 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---ED-----------   67 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---GG-----------
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---HH-----------
Confidence            578999999999999999999885  799998643  334444445542111 22333333332   21           


Q ss_pred             CCCccEEEECcccCC
Q 042455          101 ALPLNILINKAGICG  115 (138)
Q Consensus       101 ~~~id~lv~~ag~~~  115 (138)
                      ...-|++|..||...
T Consensus        68 ~~~aDiVvitaG~~~   82 (142)
T d1o6za1          68 TAGSDVVVITAGIPR   82 (142)
T ss_dssp             GTTCSEEEECCCCCC
T ss_pred             hhhcCEEEEeccccc
Confidence            235799999999754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.016  Score=35.37  Aligned_cols=77  Identities=18%  Similarity=0.212  Sum_probs=48.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC-C--CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           26 TAIVTGASSGIGAETTRVLALR-G--VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~-g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++.|+|++|.+|.++|..|+.+ +  .++++.+..+ ..+....++...........+ ..-.+.+.+           .
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~-~~~~~~~~~-----------~   68 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGF-SGEDATPAL-----------E   68 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEE-CSSCCHHHH-----------T
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEE-EcCCCcccc-----------C
Confidence            4779999999999999988643 4  4899999864 444555566543212222221 222233322           1


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      .-|++|..+|...
T Consensus        69 ~aDvvvitaG~~~   81 (145)
T d2cmda1          69 GADVVLISAGVRR   81 (145)
T ss_dssp             TCSEEEECCSCCC
T ss_pred             CCCEEEECCCccC
Confidence            3599999999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.77  E-value=0.0062  Score=37.09  Aligned_cols=75  Identities=17%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcCCC-CeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQNPA-AKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ++.|+|+ |.+|..++..++.++.  +++++++++++++....++....+- ........|   +           +...
T Consensus         3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~-----------~~~~   67 (142)
T d1y6ja1           3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y-----------SDVK   67 (142)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G-----------GGGT
T ss_pred             eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H-----------HHhC
Confidence            4566787 9999999999999875  7999999998876666677543221 122221111   1           1233


Q ss_pred             CccEEEECcccCC
Q 042455          103 PLNILINKAGICG  115 (138)
Q Consensus       103 ~id~lv~~ag~~~  115 (138)
                      .-|++|..||...
T Consensus        68 ~adivvitag~~~   80 (142)
T d1y6ja1          68 DCDVIVVTAGANR   80 (142)
T ss_dssp             TCSEEEECCCC--
T ss_pred             CCceEEEeccccc
Confidence            5699999999764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.013  Score=34.10  Aligned_cols=73  Identities=16%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ...+.++.|.|| |-+|+-++....+.|+++++.+.+++.-..          ..--.++..|..|.+.+..+....   
T Consensus         8 ~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~----------~va~~~i~~~~~d~~~l~~~~~~~---   73 (111)
T d1kjqa2           8 RPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM----------HVAHRSHVINMLDGDALRRVVELE---   73 (111)
T ss_dssp             STTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG----------GGSSEEEECCTTCHHHHHHHHHHH---
T ss_pred             CCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh----------hcCCeEEECCCCCHHHHHHHHHhh---
Confidence            345567999996 689999999888899999999987653111          111246778999999998888764   


Q ss_pred             CCCccEEEE
Q 042455          101 ALPLNILIN  109 (138)
Q Consensus       101 ~~~id~lv~  109 (138)
                        .+|++..
T Consensus        74 --~~DviT~   80 (111)
T d1kjqa2          74 --KPHYIVP   80 (111)
T ss_dssp             --CCSEEEE
T ss_pred             --CCceEEE
Confidence              5788744

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.74  E-value=0.019  Score=35.89  Aligned_cols=89  Identities=17%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      ..-+++|.|+ +-.|+.-++.....|+.|.+.+.+.++++++.....     ..+..   -.++.+.+++.+.       
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~---~~~~~~~l~~~~~-------   94 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVEL---LYSNSAEIETAVA-------   94 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEE---EECCHHHHHHHHH-------
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----cccee---ehhhhhhHHHhhc-------
Confidence            4668999988 588899999999999999999999888877655442     22222   3345666655544       


Q ss_pred             CccEEEECcccCC--CCCccCHHHHHH
Q 042455          103 PLNILINKAGICG--TPFMLSKDNIEL  127 (138)
Q Consensus       103 ~id~lv~~ag~~~--~~~~~~~~~~~~  127 (138)
                      .-|++|..+=+.+  .+.-.+.+.+..
T Consensus        95 ~aDivI~aalipG~~aP~lIt~~mv~~  121 (168)
T d1pjca1          95 EADLLIGAVLVPGRRAPILVPASLVEQ  121 (168)
T ss_dssp             TCSEEEECCCCTTSSCCCCBCHHHHTT
T ss_pred             cCcEEEEeeecCCcccCeeecHHHHhh
Confidence            3599999998764  234456655443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.71  E-value=0.0021  Score=39.89  Aligned_cols=41  Identities=17%  Similarity=0.204  Sum_probs=34.1

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      .+.+++|.|+ |++|...++.+...|++|+++++++++.+..
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            4788999875 8999998888888899999999988776543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.69  E-value=0.0033  Score=40.53  Aligned_cols=101  Identities=11%  Similarity=0.053  Sum_probs=63.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhH------HHHHHHHhcCCCCeeEEEEecCCCHHH---H
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGR------DVKVAIVMQNPAAKVDVMELDLSSLAS---V   90 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~------~~~~~l~~~~~~~~~~~~~~D~~~~~~---~   90 (138)
                      .++.+|++.|.|. |.||+.+++.+..-|++|+..++......      ....++..   ...+..+.+..++...   -
T Consensus        41 ~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~---~~D~v~~~~plt~~T~~li~  116 (199)
T d1dxya1          41 KELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFK---QSDVIDLHVPGIEQNTHIIN  116 (199)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHH---HCSEEEECCCCCGGGTTSBC
T ss_pred             ccccceeeeeeec-ccccccccccccccceeeeccCCccchhhhcchhHHHHHHHHH---hcccceeeeccccccccccc
Confidence            4678999999988 69999999999999999999988543210      01222222   3567777777764332   1


Q ss_pred             HHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhc
Q 042455           91 RKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATN  132 (138)
Q Consensus        91 ~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n  132 (138)
                      ++.+...     +-+.++.|+|...   -++++++.+.++.+
T Consensus       117 ~~~l~~m-----k~~a~lIN~aRG~---vvde~aL~~aL~~g  150 (199)
T d1dxya1         117 EAAFNLM-----KPGAIVINTARPN---LIDTQAMLSNLKSG  150 (199)
T ss_dssp             HHHHHHS-----CTTEEEEECSCTT---SBCHHHHHHHHHTT
T ss_pred             HHHhhcc-----CCceEEEecccHh---hhhhHHHHHHHhcC
Confidence            2333332     4466777777532   35566666655544

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.69  E-value=0.0041  Score=38.49  Aligned_cols=84  Identities=24%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHH-------hcCCCCeeEEEEecCCCHHHHHHHH---HH
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV-------MQNPAAKVDVMELDLSSLASVRKFA---SD   96 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~~D~~~~~~~~~~~---~~   96 (138)
                      +-|.|. |-+|..+|+.|++.|++|++.+|++++.++....-.       +.....++.  -.=+.+.+.++.++   +.
T Consensus         3 IgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~i--i~~v~~~~~v~~v~~~~~~   79 (161)
T d1vpda2           3 VGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI--ITMLPNSPHVKEVALGENG   79 (161)
T ss_dssp             EEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEE--EECCSSHHHHHHHHHSTTC
T ss_pred             EEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeE--EEEcCCHHHHHHHHhCCcc
Confidence            556665 799999999999999999999999887766543110       000012222  33345677777766   23


Q ss_pred             HHhcCCCccEEEECccc
Q 042455           97 FTARALPLNILINKAGI  113 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~  113 (138)
                      +.....+=+++|.+...
T Consensus        80 ~~~~~~~g~iiid~sT~   96 (161)
T d1vpda2          80 IIEGAKPGTVLIDMSSI   96 (161)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             hhhccCCCCEEEECCCC
Confidence            44444444666666553

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.66  E-value=0.0016  Score=39.87  Aligned_cols=75  Identities=12%  Similarity=0.101  Sum_probs=49.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhcC--CCCeeEEEE-ecCCCHHHHHHHHHHHHhc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQN--PAAKVDVME-LDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~-~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++.|+|+ |.+|..+|..++.+|.  ++++++.+++.++....++....  -........ .|.   +           .
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~---~-----------~   66 (142)
T d1ojua1           2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY---S-----------L   66 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG---G-----------G
T ss_pred             EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH---H-----------H
Confidence            3567786 9999999999998874  79999999888766655554321  112222222 232   1           2


Q ss_pred             CCCccEEEECcccCC
Q 042455          101 ALPLNILINKAGICG  115 (138)
Q Consensus       101 ~~~id~lv~~ag~~~  115 (138)
                      ...-|++|..+|...
T Consensus        67 ~~~adiVvitag~~~   81 (142)
T d1ojua1          67 LKGSEIIVVTAGLAR   81 (142)
T ss_dssp             GTTCSEEEECCCCCC
T ss_pred             hccccEEEEeccccC
Confidence            235699999999754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.64  E-value=0.0011  Score=42.58  Aligned_cols=42  Identities=24%  Similarity=0.166  Sum_probs=35.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~   66 (138)
                      .+++.|.|+ |..|.++|..|++.|.+|.+.+|+++..+++..
T Consensus         7 m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~   48 (189)
T d1n1ea2           7 LNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNE   48 (189)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHH
T ss_pred             eceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhh
Confidence            356888988 589999999999999999999999877766543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.63  E-value=0.015  Score=35.34  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHHhc--CCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIVMQ--NPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++.|+|+ |.+|..+|..++.+|.  ++++++.++++++....++...  +.+. ......+  +.+.           .
T Consensus         3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~-~~i~~~~--~~~~-----------~   67 (143)
T d1llda1           3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPT-VSIDGSD--DPEI-----------C   67 (143)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTT-CEEEEES--CGGG-----------G
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCC-ceeecCC--CHHH-----------h
Confidence            4666786 9999999999999885  7999999988876666666532  1122 2222221  1111           1


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                      ..-|++|..+|...
T Consensus        68 ~daDvVVitaG~~~   81 (143)
T d1llda1          68 RDADMVVITAGPRQ   81 (143)
T ss_dssp             TTCSEEEECCCCCC
T ss_pred             hCCcEEEEeccccc
Confidence            24599999999764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0036  Score=39.24  Aligned_cols=44  Identities=32%  Similarity=0.404  Sum_probs=37.8

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      .+++||.++|.|.+.-+|+.++..|.++|+.|.++.+......+
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~   76 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRH   76 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHH
T ss_pred             cccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHH
Confidence            46899999999999999999999999999999888776554443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.60  E-value=0.0023  Score=41.70  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=31.1

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      +.+.|.|+|+|| |-.|.+.|..|+++|++|.++.|+
T Consensus         3 ~~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           3 MHSQKRVVVLGS-GVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence            345678999998 588999999999999999999874

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.60  E-value=0.00053  Score=43.85  Aligned_cols=105  Identities=19%  Similarity=0.178  Sum_probs=62.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH-HHHHHHhcCCCCeeEEEEecCCCHHHHHHHH-HHHH
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD-VKVAIVMQNPAAKVDVMELDLSSLASVRKFA-SDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~   98 (138)
                      .+.||++.|.|. |.||+.+++.+..-|++|+..++....... ....+.+......+..+.+.+++.  -..++ ++..
T Consensus        39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~--t~~li~~~~l  115 (181)
T d1qp8a1          39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKH--TRGLVKYQHL  115 (181)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTT--TTTCBCHHHH
T ss_pred             cccCceEEEecc-ccccccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccc--ccccccccee
Confidence            478999999998 579999999999999999999886432110 000111112246677777776542  22222 2223


Q ss_pred             hcCCCccEEEECcccCCCCCccCHHHHHHHhhhc
Q 042455           99 ARALPLNILINKAGICGTPFMLSKDNIELHFATN  132 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n  132 (138)
                      +.. +-+.++.|+|..   .-.+.+.+.+.++.+
T Consensus       116 ~~m-k~~ailIN~~RG---~ivd~~aL~~aL~~~  145 (181)
T d1qp8a1         116 ALM-AEDAVFVNVGRA---EVLDRDGVLRILKER  145 (181)
T ss_dssp             TTS-CTTCEEEECSCG---GGBCHHHHHHHHHHC
T ss_pred             eec-cccceEEecccc---ccccchhhhhhcccC
Confidence            333 335555556542   235566666655554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.58  E-value=0.021  Score=35.15  Aligned_cols=85  Identities=9%  Similarity=0.123  Sum_probs=54.6

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCcchhHHHHHHHH----------hcCCCCeeEEEEecCCCHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV--HVIMADRNMAAGRDVKVAIV----------MQNPAAKVDVMELDLSSLASVRK   92 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~----------~~~~~~~~~~~~~D~~~~~~~~~   92 (138)
                      |+++|+|. |-+|.++|+.|.+.|+  +|+..+++++..+.....-.          .......+..+..   -...+..
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~---p~~~~~~   77 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS---PVRTFRE   77 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS---CHHHHHH
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC---Cchhhhh
Confidence            56888976 8999999999999986  78888998777665443210          0000122333332   3567778


Q ss_pred             HHHHHHhcCCCccEEEECccc
Q 042455           93 FASDFTARALPLNILINKAGI  113 (138)
Q Consensus        93 ~~~~~~~~~~~id~lv~~ag~  113 (138)
                      +++++.....+=.+++..++.
T Consensus        78 vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          78 IAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHSCTTCEEEECCSC
T ss_pred             hhhhhhccccccccccccccc
Confidence            888877665555566655554

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.018  Score=35.31  Aligned_cols=79  Identities=13%  Similarity=0.017  Sum_probs=46.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC-------EEEEEecCcc--hhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV-------HVIMADRNMA--AGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~-------~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ++.|+||+|.+|..++..|+..+.       .+++.+.++.  .++.+..++....... ...+..-- +.         
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~---------   73 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATD-KE---------   73 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEES-CH---------
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccc-ccccccCc-cc---------
Confidence            689999999999999999986532       4666665543  3444444443332111 11111111 11         


Q ss_pred             HHhcCCCccEEEECcccCCC
Q 042455           97 FTARALPLNILINKAGICGT  116 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~~~  116 (138)
                       .+.+...|++|..+|....
T Consensus        74 -~~~~~~~dvVVitag~~~~   92 (154)
T d5mdha1          74 -EIAFKDLDVAILVGSMPRR   92 (154)
T ss_dssp             -HHHTTTCSEEEECCSCCCC
T ss_pred             -ccccCCceEEEEecccCCC
Confidence             1122467999999998653

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.55  E-value=0.0027  Score=40.77  Aligned_cols=104  Identities=11%  Similarity=0.099  Sum_probs=63.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH----------HHHHHhcCCCCeeEEEEecCCCHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV----------KVAIVMQNPAAKVDVMELDLSSLA   88 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~----------~~~l~~~~~~~~~~~~~~D~~~~~   88 (138)
                      ..++.+|++.|.|. |.||+.+++.+...|++++..++........          ..++..   ...+..+.+.+++..
T Consensus        42 ~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~---~sD~v~l~~plt~~T  117 (191)
T d1gdha1          42 GEKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLS---VSQFFSLNAPSTPET  117 (191)
T ss_dssp             BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHH---HCSEEEECCCCCTTT
T ss_pred             cceecccceEEeec-ccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHh---hCCeEEecCCCCchH
Confidence            34678999999988 6999999999999999999988754422211          112222   355777777776432


Q ss_pred             HHHHHHHH-HHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhc
Q 042455           89 SVRKFASD-FTARALPLNILINKAGICGTPFMLSKDNIELHFATN  132 (138)
Q Consensus        89 ~~~~~~~~-~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n  132 (138)
                        +.++.+ ..+.+ +-+.++.|++...   -++++.+.+.++.+
T Consensus       118 --~~li~~~~l~~m-k~~a~lIN~sRG~---ivde~aL~~aL~~g  156 (191)
T d1gdha1         118 --RYFFNKATIKSL-PQGAIVVNTARGD---LVDNELVVAALEAG  156 (191)
T ss_dssp             --TTCBSHHHHTTS-CTTEEEEECSCGG---GBCHHHHHHHHHHT
T ss_pred             --hheecHHHhhCc-CCccEEEecCCcc---chhhHHHHHHHHcC
Confidence              222221 11222 4567777776532   34555555555444

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0019  Score=39.82  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=30.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA   60 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~   60 (138)
                      +++|.|+ |.+|..++..|++.|++|.+++|++++
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            4788888 899999999999999999999997654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.45  E-value=0.02  Score=35.72  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~   67 (138)
                      +-|+|. |.+|.++|+.|++.|++|.+.+|++++.+++.++
T Consensus         4 IGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~   43 (178)
T d1pgja2           4 VGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA   43 (178)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             EEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            444554 7999999999999999999999999887776544

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0039  Score=39.25  Aligned_cols=45  Identities=27%  Similarity=0.335  Sum_probs=39.0

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      ..+++||.++|.|.+.-+|+.++..|+++|+.|.++.+......+
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~   78 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDE   78 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHH
Confidence            356899999999999999999999999999999998876655443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.43  E-value=0.0019  Score=38.51  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=48.6

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      |.++|.|. +.+|..+++.|.  |.+++++..+++..+...    .    ..+.++.+|.++++.++++      ...+-
T Consensus         1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~----~----~~~~~i~Gd~~~~~~L~~a------~i~~A   63 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVL----R----SGANFVHGDPTRVSDLEKA------NVRGA   63 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHH----H----TTCEEEESCTTSHHHHHHT------TCTTC
T ss_pred             CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHH----h----cCccccccccCCHHHHHHh------hhhcC
Confidence            45777776 789999999984  456788888877755432    1    1356778999988776543      23456


Q ss_pred             cEEEECcc
Q 042455          105 NILINKAG  112 (138)
Q Consensus       105 d~lv~~ag  112 (138)
                      +.+|....
T Consensus        64 ~~vi~~~~   71 (129)
T d2fy8a1          64 RAVIVNLE   71 (129)
T ss_dssp             SEEEECCS
T ss_pred             cEEEEecc
Confidence            77776554

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.35  E-value=0.022  Score=33.04  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=31.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      ..|.++|.|| |-+|.++|..|.+.|.+|.++.|.+.
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            3578999988 69999999999999999999988654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.34  E-value=0.013  Score=36.15  Aligned_cols=39  Identities=18%  Similarity=0.107  Sum_probs=32.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDV   64 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~   64 (138)
                      +++-+.|. |-+|.++|+.|++.|++|.+.+|+.++.+.+
T Consensus         2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~   40 (162)
T d3cuma2           2 KQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGL   40 (162)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhhhhhh
Confidence            35667765 7999999999999999999999987776554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.027  Score=35.65  Aligned_cols=101  Identities=14%  Similarity=0.074  Sum_probs=64.1

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchh-------HHHHHHHHhcCCCCeeEEEEecCCCHHH--
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG-------RDVKVAIVMQNPAAKVDVMELDLSSLAS--   89 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~-------~~~~~~l~~~~~~~~~~~~~~D~~~~~~--   89 (138)
                      ..++.++++.|.|. |.||+.+++.+..-|++|+..++.....       .. ..++.+   ...+..+.+.+++...  
T Consensus        39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~-l~ell~---~sDii~i~~plt~~T~~l  113 (188)
T d1sc6a1          39 SFEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQH-LSDLLN---MSDVVSLHVPENPSTKNM  113 (188)
T ss_dssp             CCCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSC-HHHHHH---HCSEEEECCCSSTTTTTC
T ss_pred             cccccceEEEEeec-ccchhhhhhhcccccceEeeccccccchhhhhhhhhh-HHHHHh---hccceeecccCCcchhhh
Confidence            34688999999976 7999999999999999999998753211       11 122222   2567777888774332  


Q ss_pred             -HHHHHHHHHhcCCCccEEEECcccCCCCCccCHHHHHHHhhhc
Q 042455           90 -VRKFASDFTARALPLNILINKAGICGTPFMLSKDNIELHFATN  132 (138)
Q Consensus        90 -~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~n  132 (138)
                       -++.++..     +-+.++.|++...   -.+.+++.+.++-+
T Consensus       114 i~~~~l~~m-----k~~a~lIN~aRG~---lvde~aL~~aL~~~  149 (188)
T d1sc6a1         114 MGAKEISLM-----KPGSLLINASRGT---VVDIPALADALASK  149 (188)
T ss_dssp             BCHHHHHHS-----CTTEEEEECSCSS---SBCHHHHHHHHHTT
T ss_pred             ccHHHHhhC-----CCCCEEEEcCcHH---hhhhHHHHHHHHcC
Confidence             13333333     3467777777532   34566666655544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.28  E-value=0.0041  Score=38.12  Aligned_cols=68  Identities=10%  Similarity=0.188  Sum_probs=45.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHh--c-----CCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           27 AIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVM--Q-----NPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~--~-----~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      +.+.|+ |.+|.++++.|++.| +++++++|++++.+.+.++..-  .     ....++.++.+   .+..+..+++++.
T Consensus         3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lav---kP~~~~~v~~~l~   78 (152)
T d1yqga2           3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAV---KPQDMEAACKNIR   78 (152)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECS---CHHHHHHHHTTCC
T ss_pred             EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEec---CHHHHHHhHHHHh
Confidence            566776 899999999999887 7999999999887776654310  0     00223333332   3667777666653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.28  E-value=0.035  Score=33.36  Aligned_cols=76  Identities=14%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC-CCEEEE-EecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           26 TAIVTGASSGIGAETTRVLALR-GVHVIM-ADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~-g~~v~~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      ++.|.|++|-+|+++++.+.+. ++.++. +++... ...    +...  +..   +..|++.++.+...++...+.  +
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~-~~~----~~~~--~~D---vvIDFS~p~~~~~~~~~~~~~--~   68 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP-LSL----LTDG--NTE---VVIDFTHPDVVMGNLEFLIDN--G   68 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC-THH----HHTT--TCS---EEEECCCTTTHHHHHHHHHHT--T
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc-hhh----hccc--cCC---EEEEcccHHHHHHHHHHHHhc--C
Confidence            4789999999999999988775 567554 454332 222    1111  222   467999999999999888764  5


Q ss_pred             ccEEEECccc
Q 042455          104 LNILINKAGI  113 (138)
Q Consensus       104 id~lv~~ag~  113 (138)
                      +.+++=..|.
T Consensus        69 ~~~ViGTTG~   78 (135)
T d1yl7a1          69 IHAVVGTTGF   78 (135)
T ss_dssp             CEEEECCCCC
T ss_pred             CCEEEecccc
Confidence            7778777774

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0069  Score=37.81  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=36.5

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA   60 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~   60 (138)
                      ...+.||+++|.|- |-+|+.+|+.+...|++|.++..++-+
T Consensus        19 ~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~   59 (163)
T d1li4a1          19 DVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPIN   59 (163)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccch
Confidence            45689999999987 589999999999999999999998754

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.19  E-value=0.057  Score=34.43  Aligned_cols=77  Identities=21%  Similarity=0.154  Sum_probs=55.8

Q ss_pred             CCCCCCCEEEEeCCCCc-hHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSG-IGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASD   96 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~-iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~   96 (138)
                      ..+++|+++|=.|++.| ++.+    ++..|+ +|+.++.++..++.+...+...  +.+..++..|+.+.         
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~----a~~~g~~~v~~vdi~~~~~~~a~~N~~~~--~~~~~~~~~d~~~~---------  106 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYG----ALLLGAKEVICVEVDKEAVDVLIENLGEF--KGKFKVFIGDVSEF---------  106 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHTGGG--TTSEEEEESCGGGC---------
T ss_pred             cCCCCCCEEEECcCcchHHHHH----HHHcCCCEEEEEcCcHHHHHHHHHHHHHc--CCCceEEECchhhh---------
Confidence            44679999997877655 4433    345676 8999999998888877776554  56778888886431         


Q ss_pred             HHhcCCCccEEEECcccC
Q 042455           97 FTARALPLNILINKAGIC  114 (138)
Q Consensus        97 ~~~~~~~id~lv~~ag~~  114 (138)
                          .+++|++|.|.-..
T Consensus       107 ----~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         107 ----NSRVDIVIMNPPFG  120 (201)
T ss_dssp             ----CCCCSEEEECCCCS
T ss_pred             ----CCcCcEEEEcCccc
Confidence                35799999988653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.013  Score=34.43  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .|.++|.|| |-||.++|..|.+.|.+|.++.+.+
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence            478899988 6999999999999999999998864

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.022  Score=33.94  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEE-EecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIM-ADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~-~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++.|.|++|..|+++++.+.+.|..++. ++++....          ....+   +..|+|.++.+.+.++...+.  ++
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~~----------~~~~D---VvIDFS~p~~~~~~l~~~~~~--~~   66 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEE----------LDSPD---VVIDFSSPEALPKTVDLCKKY--RA   66 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEEE----------CSCCS---EEEECSCGGGHHHHHHHHHHH--TC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHHH----------hccCC---EEEEecCHHHHHHHHHHHHhc--CC
Confidence            4889999999999999988888987654 45443221          11222   356999999999999988765  56


Q ss_pred             cEEEECccc
Q 042455          105 NILINKAGI  113 (138)
Q Consensus       105 d~lv~~ag~  113 (138)
                      .+++=..|.
T Consensus        67 p~ViGTTG~   75 (128)
T d1vm6a3          67 GLVLGTTAL   75 (128)
T ss_dssp             EEEECCCSC
T ss_pred             CEEEEcCCC
Confidence            788777775

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.07  E-value=0.029  Score=32.72  Aligned_cols=36  Identities=28%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ...+.++|.|| |-||.++|..|.+.|.+|.++.+.+
T Consensus        20 ~~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence            34588999998 6999999999999999999988764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.01  E-value=0.0095  Score=35.17  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ..+|+++|.|| |-+|.++|..|.+.|.+|.++.+.+
T Consensus        28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence            45788999987 6999999999999999999998864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.99  E-value=0.0087  Score=35.30  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .+|+++|.|| |-+|.++|..|.+.|.+|.++.+.+.
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            4688999988 69999999999999999999988754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.019  Score=33.81  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=30.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .|.++|.|+ |-||.++|..|...|.+|.++.|.+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            478999988 5899999999999999999999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.96  E-value=0.013  Score=35.62  Aligned_cols=44  Identities=16%  Similarity=0.238  Sum_probs=35.8

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIV   69 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~   69 (138)
                      |++.|+|+ |.+|.++|..|+.++. ++++++.+++..+....++.
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~   46 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLY   46 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHH
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhh
Confidence            56777786 8999999999998875 89999999887766666653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.96  E-value=0.011  Score=38.99  Aligned_cols=48  Identities=19%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~   67 (138)
                      ..++.||+++|-|- |.+|..+|+.|.+.|++|++++.+....+.....
T Consensus        34 ~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~   81 (230)
T d1leha1          34 SDSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE   81 (230)
T ss_dssp             SCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHh
Confidence            34689999998877 6999999999999999999999887776665544

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.91  E-value=0.0077  Score=36.91  Aligned_cols=41  Identities=7%  Similarity=0.211  Sum_probs=33.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHH
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   68 (138)
                      +.+.|+ |.+|.++++.|.+.|+++++.+|+.++.+++.+++
T Consensus         3 Ig~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~   43 (152)
T d2ahra2           3 IGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL   43 (152)
T ss_dssp             EEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred             EEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence            455655 79999999999999999999999988877765554

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.048  Score=33.41  Aligned_cols=44  Identities=16%  Similarity=0.216  Sum_probs=31.5

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC--CCEEEEEe--cCcchhHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALR--GVHVIMAD--RNMAAGRDVKVAI   68 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~--r~~~~~~~~~~~l   68 (138)
                      |++.|.|+||+||.....-..+.  .++|..++  +|-+.+.++..++
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f   49 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEF   49 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHH
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHH
Confidence            67999999999999988877765  46766543  3444555555555

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0086  Score=37.67  Aligned_cols=38  Identities=29%  Similarity=0.265  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      .+++||.++|.|-+.=+|+-++..|+++|+.|..+..+
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            37899999999999999999999999999999887654

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0075  Score=44.48  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=42.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC-------------------cchhHHHHHHHHhcCCCCeeEEE
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRN-------------------MAAGRDVKVAIVMQNPAAKVDVM   80 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   80 (138)
                      +.+.+++|.|+ ||+|.++++.|+..|. ++.+++.+                   ..+++.+...+.+..|..++..+
T Consensus        23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~  100 (529)
T d1yova1          23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV  100 (529)
T ss_dssp             HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred             HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence            55678999987 7999999999999997 78888653                   23556666777776665544443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.02  Score=33.25  Aligned_cols=34  Identities=24%  Similarity=0.150  Sum_probs=30.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .|+++|.|+ |-+|.++|..|.+.|.+|.++.|.+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence            467888888 6999999999999999999998865

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.75  E-value=0.012  Score=37.58  Aligned_cols=82  Identities=10%  Similarity=0.088  Sum_probs=59.9

Q ss_pred             CCEEE-EeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAI-VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~l-itG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +.+++ .|.|+||...++.+.+ . +.+|+.++++++.++.....+...  +.++.++..++++...+   +...  ..+
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~--~~r~~~~~~~f~~~~~~---~~~~--~~~   94 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEF--SDRVSLFKVSYREADFL---LKTL--GIE   94 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGG--TTTEEEEECCGGGHHHH---HHHT--TCS
T ss_pred             CCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccc--cccccchhHHHhhHHHH---HHHc--CCC
Confidence            44443 6777888888888876 3 468999999998888777766554  56799999998765443   3322  246


Q ss_pred             CccEEEECcccC
Q 042455          103 PLNILINKAGIC  114 (138)
Q Consensus       103 ~id~lv~~ag~~  114 (138)
                      ++|+++.-.|+.
T Consensus        95 ~vdgIl~DlGvS  106 (192)
T d1m6ya2          95 KVDGILMDLGVS  106 (192)
T ss_dssp             CEEEEEEECSCC
T ss_pred             Ccceeeeccchh
Confidence            899999999985

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.73  E-value=0.024  Score=34.73  Aligned_cols=77  Identities=13%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcC--CCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQN--PAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .++.|+|+ |.+|..++..++..+. ++++++++++.++....++....  ..........+  ++           +..
T Consensus         4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~-----------~~~   69 (150)
T d1t2da1           4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY-----------DDL   69 (150)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG-----------GGG
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc-----------ccc
Confidence            46777895 8999999988888775 89999999888766666554321  12222333222  11           122


Q ss_pred             CCccEEEECcccCC
Q 042455          102 LPLNILINKAGICG  115 (138)
Q Consensus       102 ~~id~lv~~ag~~~  115 (138)
                      ..-|++|..+|...
T Consensus        70 ~~advvvitag~~~   83 (150)
T d1t2da1          70 AGADVVIVTAGFTK   83 (150)
T ss_dssp             TTCSEEEECCSCSS
T ss_pred             CCCcEEEEeccccc
Confidence            45799999999764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.65  E-value=0.015  Score=33.71  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=30.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .|.++|.|| |-+|.++|..|.+.|++|.++.+.+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence            478888887 6999999999999999999998864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.59  E-value=0.013  Score=34.34  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .|+++|.|| |-+|.++|..|...|.+|.++.|.+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            578999988 6999999999999999999999854

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.58  E-value=0.0087  Score=39.35  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=29.0

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      +|+|+|+|| |--|+..|..|++.|++|.++.+++
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            588999988 4667889999999999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.51  E-value=0.039  Score=32.34  Aligned_cols=33  Identities=30%  Similarity=0.296  Sum_probs=29.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      .+.++|+|| |-||.++|..|.+.|.+|.++.|+
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            467888888 699999999999999999998875

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.46  E-value=0.012  Score=34.59  Aligned_cols=35  Identities=34%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      +|.++|.|| |-+|.++|..|.+.|.+|.++.+.+.
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence            478888888 69999999999999999999988653

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=95.35  E-value=0.11  Score=30.04  Aligned_cols=82  Identities=9%  Similarity=0.088  Sum_probs=51.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      ||++||+-....+...+...|-+.|++|+....+...+-+..   +...  ..+...-.++-+.+ --.+++++++....
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~---~~~~--~dliilD~~mp~~~-G~e~~~~ir~~~~~   74 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKY---KELK--PDIVTMDITMPEMN-GIDAIKEIMKIDPN   74 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---HHHC--CSEEEEECSCGGGC-HHHHHHHHHHHCTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHH---Hhcc--CCEEEEecCCCCCC-HHHHHHHHHHhCCC
Confidence            789999999888888888888888999876665544433333   3222  23333333333332 33556666666667


Q ss_pred             ccEEEECc
Q 042455          104 LNILINKA  111 (138)
Q Consensus       104 id~lv~~a  111 (138)
                      +.+++..+
T Consensus        75 ~pvi~ls~   82 (118)
T d1u0sy_          75 AKIIVCSA   82 (118)
T ss_dssp             CCEEEEEC
T ss_pred             CcEEEEEc
Confidence            77777654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.34  E-value=0.02  Score=33.34  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=32.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      ..+|.++|.|+ |-+|.++|..|...|.+|.++.+.+.
T Consensus        20 ~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            34789999988 69999999999999999999988643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.34  E-value=0.095  Score=32.83  Aligned_cols=81  Identities=22%  Similarity=0.341  Sum_probs=56.1

Q ss_pred             CCCCCEEEE-eCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIV-TGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~li-tG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      ..+|+.+|= -.|+|++|.+    .+.+|+ .|++++.+.+..+.+.+.+.......++.++..|+.      +++++..
T Consensus        39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~------~~l~~~~  108 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN------RALEQFY  108 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH------HHHHHHH
T ss_pred             hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch------hhhhhhc
Confidence            457888874 4556778775    445787 699999999888887777765543457888888863      2344444


Q ss_pred             hcCCCccEEEECc
Q 042455           99 ARALPLNILINKA  111 (138)
Q Consensus        99 ~~~~~id~lv~~a  111 (138)
                      ....++|+++...
T Consensus       109 ~~~~~fDlIflDP  121 (182)
T d2fhpa1         109 EEKLQFDLVLLDP  121 (182)
T ss_dssp             HTTCCEEEEEECC
T ss_pred             ccCCCcceEEech
Confidence            4445789998665

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.31  E-value=0.014  Score=34.37  Aligned_cols=35  Identities=26%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .|.++|.|| |-||.++|..|.+.|.+|.++.|++.
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence            578999988 69999999999999999999988653

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.31  E-value=0.047  Score=35.35  Aligned_cols=79  Identities=20%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+.++|-+|+++|--.++..+++  |.+|+.+.++++-.+.....+.... -.++.++..|..+          -....+
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g-~~nv~~~~gd~~~----------g~~~~~  144 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAG-VKNVHVILGDGSK----------GFPPKA  144 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTT-CCSEEEEESCGGG----------CCGGGC
T ss_pred             ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcC-CceeEEEECcccc----------CCcccC
Confidence            57799999999888777777676  4579999999887777777776653 4678999999752          112346


Q ss_pred             CccEEEECcccC
Q 042455          103 PLNILINKAGIC  114 (138)
Q Consensus       103 ~id~lv~~ag~~  114 (138)
                      +.|.++.++++.
T Consensus       145 pfD~Iiv~~a~~  156 (215)
T d1jg1a_         145 PYDVIIVTAGAP  156 (215)
T ss_dssp             CEEEEEECSBBS
T ss_pred             cceeEEeecccc
Confidence            899999988874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.27  E-value=0.023  Score=36.46  Aligned_cols=72  Identities=22%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+++||++|=.|++.|+ .+  -.++..|+ +|+.++.+++..+......      ..+.++.+|+.+.           
T Consensus        45 ~dl~Gk~VLDlGcGtG~-l~--i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l-----------  104 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGI-LA--CGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEI-----------  104 (197)
T ss_dssp             TSSBTSEEEEETCTTCH-HH--HHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGC-----------
T ss_pred             CCCCCCEEEEeCCCCcH-HH--HHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhc-----------
Confidence            46799999999988773 22  33566675 7999999887766554432      3467888888531           


Q ss_pred             hcCCCccEEEECccc
Q 042455           99 ARALPLNILINKAGI  113 (138)
Q Consensus        99 ~~~~~id~lv~~ag~  113 (138)
                        -+++|++|.|.-.
T Consensus       105 --~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 --SGKYDTWIMNPPF  117 (197)
T ss_dssp             --CCCEEEEEECCCC
T ss_pred             --CCcceEEEeCccc
Confidence              2579999988653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.23  E-value=0.0078  Score=37.94  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=28.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      ++.|.|+ |..|.++|..|++.|.+|.+.+|..+
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~   34 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD   34 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            4667887 69999999999999999999998543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.21  E-value=0.079  Score=33.42  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=35.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVK   65 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   65 (138)
                      ...-.++|.|+ +-.|+.-++.....|++|.+.+.+.+..+++.
T Consensus        27 V~pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          27 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             cCCcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            34568899988 58899999999999999999999988866644

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.20  E-value=0.027  Score=34.95  Aligned_cols=42  Identities=12%  Similarity=0.232  Sum_probs=36.9

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchh
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG   61 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~   61 (138)
                      ...+.||+++|.|- |-+|+.+|+.+...|++|+++..++-++
T Consensus        18 ~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~a   59 (163)
T d1v8ba1          18 DFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICA   59 (163)
T ss_dssp             CCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred             CceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhh
Confidence            45689999999987 6899999999999999999999987553

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.18  E-value=0.012  Score=36.85  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=29.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~   58 (138)
                      +|+++|+|| |-.|...|..|.++|+ .|.++.++.
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            678999998 5889999999999998 598888854

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.03  E-value=0.085  Score=33.87  Aligned_cols=81  Identities=12%  Similarity=0.068  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .|.++|-+|+++|--.+...++......|+.++.+++..+.....+.... -.++.++..|..+.          ....+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-~~n~~~~~~d~~~~----------~~~~~  143 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-IENVIFVCGDGYYG----------VPEFS  143 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-CCSEEEEESCGGGC----------CGGGC
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-ccccccccCchHHc----------ccccc
Confidence            57799999988776555555555555689999999888888777776543 34567777775421          11235


Q ss_pred             CccEEEECcccC
Q 042455          103 PLNILINKAGIC  114 (138)
Q Consensus       103 ~id~lv~~ag~~  114 (138)
                      ++|.++.+++..
T Consensus       144 ~fD~I~~~~~~~  155 (213)
T d1dl5a1         144 PYDVIFVTVGVD  155 (213)
T ss_dssp             CEEEEEECSBBS
T ss_pred             chhhhhhhccHH
Confidence            789999888753

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.02  E-value=0.23  Score=33.60  Aligned_cols=77  Identities=13%  Similarity=0.113  Sum_probs=49.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++|++|-.|++.|+   ++..+++.|+ +|+.++.++. .....+......-..++.++..|+.+.+          ..
T Consensus        32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~----------~~   97 (316)
T d1oria_          32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE----------LP   97 (316)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC----------CS
T ss_pred             CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc----------cc
Confidence            478999999998775   3455667786 7999987653 4443333333322456888888886532          12


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                      ..++|+++....
T Consensus        98 ~~~~D~ivs~~~  109 (316)
T d1oria_          98 VEKVDIIISEWM  109 (316)
T ss_dssp             SSCEEEEEECCC
T ss_pred             cceeEEEeeeee
Confidence            356888877543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.00  E-value=0.027  Score=33.59  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=31.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .+|+++|.|| |-+|.++|..|.+.|.+|.++.+.+.
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence            4788999988 69999999999999999999988653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.94  E-value=0.021  Score=34.85  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=29.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC--EEEEEecCc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV--HVIMADRNM   58 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~--~v~~~~r~~   58 (138)
                      .||+++|+|| |-.|.++|..|.+.+.  +|.++.+++
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999 5889999999999874  788887765

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.93  E-value=0.026  Score=36.67  Aligned_cols=35  Identities=26%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      +.++|+|+|| |--|+..|..|+++|.+|.++.+++
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4577999998 4777888889999999999998864

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=94.92  E-value=0.14  Score=34.25  Aligned_cols=79  Identities=14%  Similarity=0.157  Sum_probs=53.1

Q ss_pred             CCEEEEeCCCCc-hHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           24 GVTAIVTGASSG-IGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        24 ~k~~litG~~~~-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+.++-.|+++| |+.++++   ...++|++++.+++..+-...+.+...-..++.+...|+.+.         .....+
T Consensus       111 ~~~vld~g~GsG~i~~~la~---~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---------~~~~~~  178 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAK---FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------FKEKFA  178 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHH---HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------GGGGTT
T ss_pred             ccEEEEeeeeeehhhhhhhh---cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---------cccccC
Confidence            345665555554 5555442   246799999999998887777766543345677778887532         334557


Q ss_pred             CccEEEECcccC
Q 042455          103 PLNILINKAGIC  114 (138)
Q Consensus       103 ~id~lv~~ag~~  114 (138)
                      ++|++|.|.-+.
T Consensus       179 ~fDlIVsNPPYI  190 (271)
T d1nv8a_         179 SIEMILSNPPYV  190 (271)
T ss_dssp             TCCEEEECCCCB
T ss_pred             cccEEEEccccc
Confidence            899999998765

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.038  Score=34.78  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=32.3

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ..+.|.++|+|| |--|.+.|..|+++|++|.++.+++
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            356789999998 5788999999999999999998864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.85  E-value=0.015  Score=38.27  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=27.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|| |-.|.++|.+|+++|.+|.++.++.
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            788887 6899999999999999999998864

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.78  E-value=0.15  Score=31.06  Aligned_cols=83  Identities=14%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC---CCHHHHHHHHHHHHh
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL---SSLASVRKFASDFTA   99 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~~   99 (138)
                      +|+.+.|++.+||.|--.+..+...|.++.-.  ++    +..+.|++..|.....--.+|+   .+.+.+.++++.+.+
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l--~~----~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~   75 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATL--EE----KTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ   75 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECCC--CH----HHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccCCC--CH----HHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHc
Confidence            57888888899999999999999999666332  22    2233333333322222224444   356777788877665


Q ss_pred             cCCCccEEEECcc
Q 042455          100 RALPLNILINKAG  112 (138)
Q Consensus       100 ~~~~id~lv~~ag  112 (138)
                      . +.+|.++....
T Consensus        76 d-~~vd~v~v~~~   87 (163)
T d2csua3          76 D-PNVDMLIAICV   87 (163)
T ss_dssp             S-TTCSEEEEEEE
T ss_pred             C-CCcCEEEEeec
Confidence            3 67887655443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.12  Score=34.96  Aligned_cols=75  Identities=12%  Similarity=0.193  Sum_probs=49.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++|++|-.|++.|+   ++..+++.|+ +|+.++.++.. ..............++.++..|+.+..          ..
T Consensus        34 ~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~-~~a~~~~~~~~~~~~i~~~~~~~~~l~----------~~   99 (311)
T d2fyta1          34 FKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEIL-YQAMDIIRLNKLEDTITLIKGKIEEVH----------LP   99 (311)
T ss_dssp             TTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHH-HHHHHHHHHTTCTTTEEEEESCTTTSC----------CS
T ss_pred             CCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHH-HHHHHHHHHhCCCccceEEEeeHHHhc----------Cc
Confidence            578999999998775   4556667787 79999987653 333333333333466888888876532          12


Q ss_pred             CCCccEEEEC
Q 042455          101 ALPLNILINK  110 (138)
Q Consensus       101 ~~~id~lv~~  110 (138)
                      ..++|++|..
T Consensus       100 ~~~~D~Ivse  109 (311)
T d2fyta1         100 VEKVDVIISE  109 (311)
T ss_dssp             CSCEEEEEEC
T ss_pred             cccceEEEEe
Confidence            2467888764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.032  Score=33.17  Aligned_cols=78  Identities=19%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             CCCCEEEEeCCCC-chHH---------HHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHH
Q 042455           22 AAGVTAIVTGASS-GIGA---------ETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVR   91 (138)
Q Consensus        22 ~~~k~~litG~~~-~iG~---------~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~   91 (138)
                      -..|++||.|++. .||+         ..++.|.+.|++++++..|++....... +     ..++.+.+.   ..+.+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d-~-----aD~lYfePl---t~e~v~   75 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE-M-----ADATYIEPI---HWEVVR   75 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGG-G-----SSEEECSCC---CHHHHH
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChh-h-----cceeeeecC---CHHHHH
Confidence            3468899998863 4443         5677888899999999999877433111 0     233333232   468888


Q ss_pred             HHHHHHHhcCCCccEEEECccc
Q 042455           92 KFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        92 ~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      ++++.-     ++|.++...|.
T Consensus        76 ~Ii~~E-----~pd~il~~~GG   92 (127)
T d1a9xa3          76 KIIEKE-----RPDAVLPTMGG   92 (127)
T ss_dssp             HHHHHH-----CCSEEECSSSH
T ss_pred             HHHHHh-----CcCCeEEEeee
Confidence            888763     79999887774

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.71  E-value=0.021  Score=38.11  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      -+.|.|+|+|| |--|+..|..|+++|.+|.++.+++.
T Consensus        28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          28 SNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            45688999998 46688999999999999999987653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.67  E-value=0.068  Score=31.42  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=30.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ..+.++|.|+ |-||.++|..|...|.+|.++.+.+
T Consensus        25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            3578999988 6999999999999999999997754

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.085  Score=35.71  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             CchHHHHHHHHHHCCCEEEEEecC
Q 042455           34 SGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        34 ~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      |-.|.++|+.++.+|+.|.++.+.
T Consensus        46 Gk~G~alA~~~~~~Ga~V~li~g~   69 (290)
T d1p9oa_          46 GRRGATSAEAFLAAGYGVLFLYRA   69 (290)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             hHHHHHHHHHHHHcCCEEEEEecC
Confidence            458999999999999999988654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.013  Score=37.21  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=27.1

Q ss_pred             CEEEEeCCCCchHH-----HHHHHHHHCCCEEEEEe
Q 042455           25 VTAIVTGASSGIGA-----ETTRVLALRGVHVIMAD   55 (138)
Q Consensus        25 k~~litG~~~~iG~-----~~a~~l~~~g~~v~~~~   55 (138)
                      |++.|||.+.|.|+     .+|+.|+++|++|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            78999999889888     57888999999998875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=94.49  E-value=0.06  Score=33.24  Aligned_cols=44  Identities=20%  Similarity=0.168  Sum_probs=35.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAI   68 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   68 (138)
                      ..+.++|..|++.|   ..+..|+++|++|..++.++...+...+..
T Consensus        19 ~~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~   62 (201)
T d1pjza_          19 VPGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTER   62 (201)
T ss_dssp             CTTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHH
T ss_pred             CCCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHh
Confidence            46889999999766   366688889999999999988777765554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.45  E-value=0.075  Score=32.09  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=30.1

Q ss_pred             CCCEEEEe-CCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           23 AGVTAIVT-GASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        23 ~~k~~lit-G~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .++.++|. .+++-||.++|..|++.|++|.++.+.+.
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            45666665 34578999999999999999999988654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=94.41  E-value=0.23  Score=32.78  Aligned_cols=58  Identities=14%  Similarity=0.109  Sum_probs=42.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      ..++++|=.|+++|+ .+  ..+++.|++|+.++.++...+....+.+..  +..+.++..|+
T Consensus       119 ~~g~~VLDiGcGsG~-l~--i~aa~~g~~V~gvDis~~av~~A~~na~~n--~~~~~~~~~d~  176 (254)
T d2nxca1         119 RPGDKVLDLGTGSGV-LA--IAAEKLGGKALGVDIDPMVLPQAEANAKRN--GVRPRFLEGSL  176 (254)
T ss_dssp             CTTCEEEEETCTTSH-HH--HHHHHTTCEEEEEESCGGGHHHHHHHHHHT--TCCCEEEESCH
T ss_pred             CccCEEEEcccchhH-HH--HHHHhcCCEEEEEECChHHHHHHHHHHHHc--CCceeEEeccc
Confidence            578999999998886 23  345667899999999999888777666544  34455666654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.40  E-value=0.044  Score=33.18  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=27.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchh
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG   61 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~   61 (138)
                      +-|.|. |.+|.++++.|.++|++|...++..++.
T Consensus         3 IgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~   36 (152)
T d1i36a2           3 VGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPS   36 (152)
T ss_dssp             EEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHH
T ss_pred             EEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHH
Confidence            455655 8999999999999999998888766543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.34  E-value=0.036  Score=37.79  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=29.7

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      ++|.++|+||+ --|+.+|..|+++|.+|.++.++..
T Consensus         1 k~KKI~IIGaG-~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAG-FSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHhCCCCEEEEECCCC
Confidence            36889999984 5677889999999999999987654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.33  E-value=0.1  Score=33.72  Aligned_cols=74  Identities=16%  Similarity=0.078  Sum_probs=50.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ...+++|=.|++.|   ..+..|+++|++|+.++.++.-++.+.+.....  +.++.++..|+.+..           --
T Consensus        40 ~~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~--~~~i~~~~~d~~~l~-----------~~  103 (251)
T d1wzna1          40 REVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKER--NLKIEFLQGDVLEIA-----------FK  103 (251)
T ss_dssp             SCCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCCEEEESCGGGCC-----------CC
T ss_pred             CCCCEEEEeCCCCC---ccchhhcccceEEEEEeeccccccccccccccc--cccchheehhhhhcc-----------cc
Confidence            35678998998766   345568889999999999987776666665544  446788888875432           01


Q ss_pred             CCccEEEECc
Q 042455          102 LPLNILINKA  111 (138)
Q Consensus       102 ~~id~lv~~a  111 (138)
                      +.+|.++..-
T Consensus       104 ~~fD~I~~~~  113 (251)
T d1wzna1         104 NEFDAVTMFF  113 (251)
T ss_dssp             SCEEEEEECS
T ss_pred             cccchHhhhh
Confidence            3578776643

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.32  E-value=0.19  Score=30.27  Aligned_cols=85  Identities=13%  Similarity=0.046  Sum_probs=54.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC----CCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP----AAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      +-+.|. |.+|..+|+.|++.|+.+ +..|+.++..+...+......    -.....+-..+.+.+.+......+.....
T Consensus         3 Ig~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~   80 (156)
T d2cvza2           3 VAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLR   80 (156)
T ss_dssp             EEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCC
T ss_pred             EEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccccc
Confidence            556666 799999999999888755 577877776665554321100    01122233345566778888887777666


Q ss_pred             CccEEEECccc
Q 042455          103 PLNILINKAGI  113 (138)
Q Consensus       103 ~id~lv~~ag~  113 (138)
                      +-.++|.+.-.
T Consensus        81 ~~~~iid~sT~   91 (156)
T d2cvza2          81 EGTYWVDATSG   91 (156)
T ss_dssp             TTEEEEECSCC
T ss_pred             ccccccccccC
Confidence            66777766653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.17  E-value=0.058  Score=34.83  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .+.|.++|+|| |--|...|..|+++|++|.++.++.
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence            46899999999 4678899999999999999998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.07  E-value=0.048  Score=34.70  Aligned_cols=36  Identities=25%  Similarity=0.193  Sum_probs=29.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      +.|.|. |-+|+.+|..|++.|++|++++.+++..+.
T Consensus         3 I~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~~i~~   38 (202)
T d1mv8a2           3 ISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTKIDL   38 (202)
T ss_dssp             EEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             EEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence            556655 799999999999999999999998765443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.06  E-value=0.31  Score=29.28  Aligned_cols=78  Identities=14%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             CCCCCEEEEeCC-CCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           21 DAAGVTAIVTGA-SSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        21 ~~~~k~~litG~-~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .+.|+.+|=.|+ +|++|.+    .+.+|+ +|..++.+++..+.+.+.+.......++.+++.|+.+      +++   
T Consensus        12 ~~~g~~vlDl~~GtG~~~ie----a~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l~---   78 (152)
T d2esra1          12 YFNGGRVLDLFAGSGGLAIE----AVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AID---   78 (152)
T ss_dssp             CCCSCEEEEETCTTCHHHHH----HHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HHH---
T ss_pred             hCCCCeEEEcCCccCHHHHH----HHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------ccc---
Confidence            467888885555 5556664    355676 7999999998888777777655444668888888532      222   


Q ss_pred             hcCCCccEEEECc
Q 042455           99 ARALPLNILINKA  111 (138)
Q Consensus        99 ~~~~~id~lv~~a  111 (138)
                      ....+.|+++...
T Consensus        79 ~~~~~fDiIf~DP   91 (152)
T d2esra1          79 CLTGRFDLVFLDP   91 (152)
T ss_dssp             HBCSCEEEEEECC
T ss_pred             ccccccceeEech
Confidence            2345789998764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.92  E-value=0.37  Score=29.78  Aligned_cols=76  Identities=21%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCCc-hHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSG-IGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++.++|=.|++.| ++    ..++..+.+|+.++.+++.++...++++...-..++.++++|..          +.....
T Consensus        33 ~g~~VLDiGcGsG~~s----~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~----------~~~~~~   98 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVT----LELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP----------EALCKI   98 (186)
T ss_dssp             TTCEEEEESCTTSHHH----HHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH----------HHHTTS
T ss_pred             CCCEEEEEECCeEccc----ccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh----------hccccc
Confidence            5777887777655 43    34555667999999999988888887766533357888888742          222334


Q ss_pred             CCccEEEECcc
Q 042455          102 LPLNILINKAG  112 (138)
Q Consensus       102 ~~id~lv~~ag  112 (138)
                      ..+|.++.+.+
T Consensus        99 ~~~D~v~~~~~  109 (186)
T d1l3ia_          99 PDIDIAVVGGS  109 (186)
T ss_dssp             CCEEEEEESCC
T ss_pred             CCcCEEEEeCc
Confidence            57888887654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.91  E-value=0.033  Score=36.79  Aligned_cols=30  Identities=33%  Similarity=0.501  Sum_probs=26.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ++|+|| |-.|.++|.+|+++|.+|+++.+.
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            788887 688999999999999999999874

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.88  E-value=0.068  Score=34.68  Aligned_cols=77  Identities=12%  Similarity=-0.008  Sum_probs=53.0

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ...+++++|=.|++.|.   ++..|+++|.+|+.++.+++-++.+.+.....  +.++.++..|+.+.+           
T Consensus        34 ~~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~--~~~v~~~~~d~~~~~-----------   97 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ--GLKPRLACQDISNLN-----------   97 (246)
T ss_dssp             TTCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECCCGGGCC-----------
T ss_pred             hCCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhcccccccc--Cccceeeccchhhhc-----------
Confidence            34667899999998775   56678888999999999887776665555443  446777777775421           


Q ss_pred             cCCCccEEEECcc
Q 042455          100 RALPLNILINKAG  112 (138)
Q Consensus       100 ~~~~id~lv~~ag  112 (138)
                      -.+++|+++...+
T Consensus        98 ~~~~fD~i~~~~~  110 (246)
T d1y8ca_          98 INRKFDLITCCLD  110 (246)
T ss_dssp             CSCCEEEEEECTT
T ss_pred             ccccccccceeee
Confidence            1246787775433

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.70  E-value=0.041  Score=35.25  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             CCEEEEeCCCCchHH-----HHHHHHHHCCCEEEEEecC
Q 042455           24 GVTAIVTGASSGIGA-----ETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        24 ~k~~litG~~~~iG~-----~~a~~l~~~g~~v~~~~r~   57 (138)
                      +|++.|+|+-||.|+     .+|..|++.|.+|.+++-+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            788999999999888     4677888889999999854

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.25  Score=31.86  Aligned_cols=82  Identities=20%  Similarity=0.112  Sum_probs=58.2

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCC----CCeeEEEEecCCCHHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNP----AAKVDVMELDLSSLASVRKFASDFT   98 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   98 (138)
                      .|.++|-+|+++|.-.++..++.....+|+.++++++-.+...+.+.....    ...+.+...|..+          ..
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~----------~~  145 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM----------GY  145 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG----------CC
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc----------cc
Confidence            577999999999887777777777777999999998887777666654321    2356677777531          11


Q ss_pred             hcCCCccEEEECcccC
Q 042455           99 ARALPLNILINKAGIC  114 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~  114 (138)
                      ...+++|.++.+++..
T Consensus       146 ~~~~~fD~I~~~~~~~  161 (224)
T d1i1na_         146 AEEAPYDAIHVGAAAP  161 (224)
T ss_dssp             GGGCCEEEEEECSBBS
T ss_pred             chhhhhhhhhhhcchh
Confidence            1235789999888763

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.61  E-value=0.37  Score=28.72  Aligned_cols=86  Identities=8%  Similarity=-0.007  Sum_probs=55.3

Q ss_pred             CCCEEEEeCCC---CchHHHHHHHHHHCCCEEEEEecCcchhH--HHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHH
Q 042455           23 AGVTAIVTGAS---SGIGAETTRVLALRGVHVIMADRNMAAGR--DVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDF   97 (138)
Q Consensus        23 ~~k~~litG~~---~~iG~~~a~~l~~~g~~v~~~~r~~~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   97 (138)
                      +.|++.|+|++   +..|..+.+.|.+.|++|+.+........  .....+...-....+..+   +..++.+..+++++
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i---~vp~~~~~~~~~e~   94 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDL---FVKPKLTMEYVEQA   94 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEE---CSCHHHHHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEE---EeCHHHHHHHHHHH
Confidence            56899999998   57999999999999999998876543211  011112211101111111   23578888888888


Q ss_pred             HhcCCCccEEEECccc
Q 042455           98 TARALPLNILINKAGI  113 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~  113 (138)
                      .+.  ++..++...|.
T Consensus        95 ~~~--g~k~v~~~~G~  108 (139)
T d2d59a1          95 IKK--GAKVVWFQYNT  108 (139)
T ss_dssp             HHH--TCSEEEECTTC
T ss_pred             HHh--CCCEEEEeccc
Confidence            765  36677777774

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.57  E-value=0.04  Score=36.79  Aligned_cols=31  Identities=23%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~   58 (138)
                      |+|+|| |-+|.++|.+|+++|. +|.++.++.
T Consensus         4 ViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           4 IVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            788888 5999999999999997 699998763

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.56  E-value=0.059  Score=35.83  Aligned_cols=36  Identities=17%  Similarity=0.198  Sum_probs=31.3

Q ss_pred             CCCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEe
Q 042455           19 GIDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMAD   55 (138)
Q Consensus        19 ~~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~   55 (138)
                      ..++++|+++|.| .|.+|..+++.|.+.|++|+.++
T Consensus        31 ~~~l~g~~v~IQG-fGnVG~~~a~~L~e~Gakvvavs   66 (255)
T d1bgva1          31 NDTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLS   66 (255)
T ss_dssp             TCCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence            3568999999998 48999999999999999987664

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.48  E-value=0.067  Score=35.24  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR   56 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r   56 (138)
                      .+++||+++|-|- |.+|..+|+.|.+.|++|+.++-
T Consensus        27 ~~l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          27 GGIEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             SCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeec
Confidence            4689999999974 79999999999999999877653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.46  E-value=0.27  Score=30.84  Aligned_cols=59  Identities=14%  Similarity=0.046  Sum_probs=40.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      .+.++|=.|++.|.   ++..|++.|++|+.++.+++..+.+.+.....  +..+..+..|+.+
T Consensus        37 ~~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~--~~~~~~~~~d~~~   95 (226)
T d1ve3a1          37 KRGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSR--ESNVEFIVGDARK   95 (226)
T ss_dssp             SCCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCCEEEECCTTS
T ss_pred             CCCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhccc--ccccccccccccc
Confidence            34578888887765   45667788999999999987776666555443  3345555666543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.034  Score=36.84  Aligned_cols=39  Identities=23%  Similarity=0.214  Sum_probs=31.3

Q ss_pred             CCCCCEEEEeCCCCchHHHH-----HHHHHHCCCEEEEEecCcc
Q 042455           21 DAAGVTAIVTGASSGIGAET-----TRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~-----a~~l~~~g~~v~~~~r~~~   59 (138)
                      .-.++.++|+.|-||.|+..     |..|+++|.+|.+++-++.
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            34577777887799999964     7888899999999988754

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.13  E-value=0.11  Score=35.22  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEec
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADR   56 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r   56 (138)
                      .++.+|+++|-|- |.+|..+|+.|.+.|++|+.++-
T Consensus        32 ~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          32 PGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             SSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            4689999999887 79999999999999999877653

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=93.11  E-value=0.13  Score=31.34  Aligned_cols=45  Identities=24%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHC--CCEEEEEec--CcchhHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALR--GVHVIMADR--NMAAGRDVKVAI   68 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~--g~~v~~~~r--~~~~~~~~~~~l   68 (138)
                      .|++.|.|+||+||.....-+-+.  .++|+.++-  |-+.+.++..++
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef   50 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRT   50 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhh
Confidence            488999999999999988877664  467766543  334444444443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.05  E-value=0.058  Score=34.02  Aligned_cols=31  Identities=23%  Similarity=0.303  Sum_probs=26.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|| |--|...|..|+++|.+|.++.+++
T Consensus         8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            788886 5778889999999999999998865

>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.68  Score=29.62  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             HHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEEEECccc
Q 042455           44 LALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        44 l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      =+++|-.|+.++..-+..++....+...+|+.++-.+...+ +.++.++++....+  +++|+||...=+
T Consensus        27 El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm-~~~eke~im~~F~~--g~~~ILv~TtvI   93 (211)
T d2eyqa5          27 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM-RERELERVMNDFHH--QRFNVLVCTTII   93 (211)
T ss_dssp             HHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSC-CHHHHHHHHHHHHT--TSCCEEEESSTT
T ss_pred             HHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEecc-CHHHHHHHHHHHHc--CCcceEEEehhh
Confidence            34568899999988778888888888889998999999998 57777888887765  689999987643

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=92.64  E-value=0.42  Score=26.63  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=27.2

Q ss_pred             CCCCEEEEeCCCCc-------hHHHHHHHHHHCCCEEEEEecCc
Q 042455           22 AAGVTAIVTGASSG-------IGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        22 ~~~k~~litG~~~~-------iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      |+.|++++.||.+.       -|+++.+.|-+.|+++..++.+.
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~   44 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE   44 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCcc
Confidence            56788888888763       35667777778888888877644

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.60  E-value=0.42  Score=26.54  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=44.6

Q ss_pred             CCCEEEEeCCCCchH-HHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIG-AETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG-~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ..|.+.+.|-+ |+| .++|+.|.++|+.|...++.....-   +.+.+.  +..+  ...+-  ++           ..
T Consensus         7 ~~~~ihfiGig-G~GMs~LA~~L~~~G~~VsGSD~~~~~~~---~~L~~~--Gi~v--~~g~~--~~-----------~i   65 (96)
T d1p3da1           7 RVQQIHFIGIG-GAGMSGIAEILLNEGYQISGSDIADGVVT---QRLAQA--GAKI--YIGHA--EE-----------HI   65 (96)
T ss_dssp             TCCEEEEETTT-STTHHHHHHHHHHHTCEEEEEESCCSHHH---HHHHHT--TCEE--EESCC--GG-----------GG
T ss_pred             hCCEEEEEEEC-HHHHHHHHHHHHhCCCEEEEEeCCCChhh---hHHHHC--CCeE--EECCc--cc-----------cC
Confidence            35667777774 455 4579999999999999998754432   334433  4433  22221  11           12


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                      ...|.+|.+.++.
T Consensus        66 ~~~d~vV~S~AI~   78 (96)
T d1p3da1          66 EGASVVVVSSAIK   78 (96)
T ss_dssp             TTCSEEEECTTSC
T ss_pred             CCCCEEEECCCcC
Confidence            3579999999874

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.59  E-value=0.24  Score=28.63  Aligned_cols=82  Identities=18%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC--CHHHHHHHHHHHHh
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS--SLASVRKFASDFTA   99 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~   99 (138)
                      |+..++||+--...+...+.+.|-..|++|..+....+.    ...+..    .....+-+|+.  +.+. -.+++++++
T Consensus         1 M~k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a----~~~l~~----~~~dlii~D~~mp~~~G-~el~~~l~~   71 (123)
T d1krwa_           1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEV----LAALAS----KTPDVLLSDIRMPGMDG-LALLKQIKQ   71 (123)
T ss_dssp             CCCCEEEEESSSHHHHHHHHHHHHHTTCEEEEESSSHHH----HHHHTT----CCCSEEEECCSSSSSTT-HHHHHHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHH----HHHHHh----CCCCEEEehhhcCCchH-HHHHHHHHH
Confidence            455689999999999999999999999998765543322    233332    22345555554  2222 335666666


Q ss_pred             cCCCccEEEECcc
Q 042455          100 RALPLNILINKAG  112 (138)
Q Consensus       100 ~~~~id~lv~~ag  112 (138)
                      ....+-+++..+-
T Consensus        72 ~~~~~piI~~t~~   84 (123)
T d1krwa_          72 RHPMLPVIIMTAH   84 (123)
T ss_dssp             HSSSCCEEESCCC
T ss_pred             hCCCCeEEEEecC
Confidence            6667777765554

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.48  E-value=0.2  Score=31.99  Aligned_cols=41  Identities=27%  Similarity=0.510  Sum_probs=32.2

Q ss_pred             cCCCCCCCEEEEeCCCCchHHHHHHHHH--------------------HCCC-EEEEEecCcc
Q 042455           18 QGIDAAGVTAIVTGASSGIGAETTRVLA--------------------LRGV-HVIMADRNMA   59 (138)
Q Consensus        18 ~~~~~~~k~~litG~~~~iG~~~a~~l~--------------------~~g~-~v~~~~r~~~   59 (138)
                      ...++.+|+++|+|+ |..+.=+|+.++                    ..|+ +|.+++|...
T Consensus        33 ~~~~~~gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          33 VSPDLSGARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCCCCSSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             cCccccCceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            345678999999998 577788888777                    5677 7999999654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.12  Score=33.16  Aligned_cols=43  Identities=12%  Similarity=0.098  Sum_probs=34.3

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVA   67 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~   67 (138)
                      ..++++|..|++.|   ..+..|+++|++|+.++-++...+...++
T Consensus        44 ~~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~   86 (229)
T d2bzga1          44 KSGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTE   86 (229)
T ss_dssp             CCSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence            36789999999876   35777889999999999998877665544

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.34  E-value=0.2  Score=32.26  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=33.5

Q ss_pred             ccCCCCCCCEEEEeCCCCchHHHHHHHHHH--------------------CCC-EEEEEecCcc
Q 042455           17 TQGIDAAGVTAIVTGASSGIGAETTRVLAL--------------------RGV-HVIMADRNMA   59 (138)
Q Consensus        17 ~~~~~~~~k~~litG~~~~iG~~~a~~l~~--------------------~g~-~v~~~~r~~~   59 (138)
                      ....++++|.++|+|+ |..+.=+|+.+++                    .|+ +|.+++|...
T Consensus        32 ~~~~~~~gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          32 ELAPDLSCDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             TCCCCTTSSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ccCccccCceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            3455678999999988 5888888988887                    476 8999999754

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.28  E-value=0.069  Score=34.08  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             CEEEEeCCCCchHHH-----HHHHHHHCCCEEEEEecCc
Q 042455           25 VTAIVTGASSGIGAE-----TTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        25 k~~litG~~~~iG~~-----~a~~l~~~g~~v~~~~r~~   58 (138)
                      |++.|+++-||.|+.     +|..|++.|.+|.+++-+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            789999999988874     5778888899999998753

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.27  E-value=0.61  Score=31.52  Aligned_cols=76  Identities=18%  Similarity=0.202  Sum_probs=49.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .+++++|-.|++.|+   ++..+++.|+ +|++++.++ .+....+..+......++.++..|+.+.+          ..
T Consensus        37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~----------~~  102 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH----------LP  102 (328)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC----------CS
T ss_pred             CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc----------Cc
Confidence            478999999998774   3455667787 788888774 34443444444433567888888876531          11


Q ss_pred             CCCccEEEECc
Q 042455          101 ALPLNILINKA  111 (138)
Q Consensus       101 ~~~id~lv~~a  111 (138)
                      ..++|+++...
T Consensus       103 ~~~~D~i~se~  113 (328)
T d1g6q1_         103 FPKVDIIISEW  113 (328)
T ss_dssp             SSCEEEEEECC
T ss_pred             ccceeEEEEEe
Confidence            24678887654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.24  E-value=0.081  Score=32.38  Aligned_cols=30  Identities=20%  Similarity=0.183  Sum_probs=24.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEE
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIM   53 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~   53 (138)
                      .++.++|+|| |-+|.++|..|.+.|.++.+
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEE
Confidence            4678999988 69999999999999875433

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=92.23  E-value=0.53  Score=26.90  Aligned_cols=80  Identities=14%  Similarity=0.196  Sum_probs=50.1

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC--CHHHHHHHHHHHHhcC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS--SLASVRKFASDFTARA  101 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~  101 (138)
                      ||++||+-....+-..+.+.|...|++|..+....+.    .+.+....  ..  .+-+|+.  +.+. -.+++++++..
T Consensus         1 NkrILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~ea----l~~~~~~~--~d--lillD~~mP~~~G-~el~~~lr~~~   71 (119)
T d1peya_           1 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQA----LDIVTKER--PD--LVLLDMKIPGMDG-IEILKRMKVID   71 (119)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHH----HHHHHHHC--CS--EEEEESCCTTCCH-HHHHHHHHHHC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHH----HHHHHhCC--CC--EEEEeccCCCCCH-HHHHHHHHHhC
Confidence            5789999999899888888888899998765533222    22233322  22  3444554  4333 34566666666


Q ss_pred             CCccEEEECcc
Q 042455          102 LPLNILINKAG  112 (138)
Q Consensus       102 ~~id~lv~~ag  112 (138)
                      ..+.+++..+-
T Consensus        72 ~~~pvi~lt~~   82 (119)
T d1peya_          72 ENIRVIIMTAY   82 (119)
T ss_dssp             TTCEEEEEESS
T ss_pred             CCCcEEEEecC
Confidence            66777776653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=92.04  E-value=0.37  Score=31.13  Aligned_cols=76  Identities=12%  Similarity=0.012  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARAL  102 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~  102 (138)
                      .+.++|-+|+++|--.+   .|++.+.+|+.+..+++..+...+.+..   ..++.++..|...          .....+
T Consensus        70 ~g~~VLdIG~GsGy~ta---~La~l~~~V~aiE~~~~~~~~A~~~~~~---~~nv~~~~~d~~~----------g~~~~~  133 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTA---LIAEIVDKVVSVEINEKMYNYASKLLSY---YNNIKLILGDGTL----------GYEEEK  133 (224)
T ss_dssp             TTCEEEEECCTTSHHHH---HHHHHSSEEEEEESCHHHHHHHHHHHTT---CSSEEEEESCGGG----------CCGGGC
T ss_pred             ccceEEEecCCCCHHHH---HHHHHhcccccccccHHHHHHHHHHHhc---ccccccccCchhh----------cchhhh
Confidence            57789999998775433   3455566899999988777665554432   3568888888642          111236


Q ss_pred             CccEEEECcccC
Q 042455          103 PLNILINKAGIC  114 (138)
Q Consensus       103 ~id~lv~~ag~~  114 (138)
                      ++|.++.++++.
T Consensus       134 pfD~Iiv~~a~~  145 (224)
T d1vbfa_         134 PYDRVVVWATAP  145 (224)
T ss_dssp             CEEEEEESSBBS
T ss_pred             hHHHHHhhcchh
Confidence            789999888753

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.03  E-value=0.43  Score=29.26  Aligned_cols=78  Identities=15%  Similarity=0.126  Sum_probs=47.0

Q ss_pred             CCCCEEEEeCC-CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGA-SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~-~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ..|+.+|=.|+ +|++|.    ..+.+|++++.++.++...+.+.+.++...-..++.  ..|   .+..   .......
T Consensus        40 ~~g~~vLDl~~G~G~~~i----~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~--~~~---~d~~---~~~~~~~  107 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGL----EAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVV--ALP---VEVF---LPEAKAQ  107 (171)
T ss_dssp             TTCCEEEEETCSSCHHHH----HHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEE--CSC---HHHH---HHHHHHT
T ss_pred             cCCCeEEEeccccchhhh----hhhhccchhhhcccCHHHHhhhhHHHHhhcccccee--eee---hhcc---ccccccc
Confidence            35777775544 455554    355679999999999988887777776553233332  222   2221   2233334


Q ss_pred             CCCccEEEECc
Q 042455          101 ALPLNILINKA  111 (138)
Q Consensus       101 ~~~id~lv~~a  111 (138)
                      ..++|+++.+.
T Consensus       108 ~~~fD~If~DP  118 (171)
T d1ws6a1         108 GERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEEECC
T ss_pred             CCccceeEEcc
Confidence            45799998775

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.85  E-value=0.42  Score=27.25  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=26.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHC---CCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALR---GVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~---g~~v~~~~r~~   58 (138)
                      .|.++|.|| |-+|.++|..|...   |.+|.++.+.+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            578999998 79999999766654   55799988754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.64  Score=27.04  Aligned_cols=77  Identities=17%  Similarity=0.110  Sum_probs=50.0

Q ss_pred             CCCEEEEeCCCC-chH---------HHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHH
Q 042455           23 AGVTAIVTGASS-GIG---------AETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRK   92 (138)
Q Consensus        23 ~~k~~litG~~~-~iG---------~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~   92 (138)
                      ..|++||.|++. .||         ...++.|-++|++++++..|++.......      -..++.+  -.+ ..+.+.+
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d------~aD~lYf--epl-t~e~v~~   73 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYD------TSDRLYF--EPV-TLEDVLE   73 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTT------SSSEEEC--CCC-SHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChh------hcCceEE--ccC-CHHHHHH
Confidence            357899999863 343         35677888899999999999876432110      0223322  233 4677877


Q ss_pred             HHHHHHhcCCCccEEEECccc
Q 042455           93 FASDFTARALPLNILINKAGI  113 (138)
Q Consensus        93 ~~~~~~~~~~~id~lv~~ag~  113 (138)
                      +++.-     ++|.++..-|-
T Consensus        74 Ii~~E-----~p~~ii~~~GG   89 (121)
T d1a9xa4          74 IVRIE-----KPKGVIVQYGG   89 (121)
T ss_dssp             HHHHH-----CCSEEECSSST
T ss_pred             HHHHh-----CCCEEEeehhh
Confidence            77753     68888877763

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.78  E-value=0.5  Score=26.81  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=27.4

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHH---CCCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLAL---RGVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~---~g~~v~~~~r~~   58 (138)
                      .|.++|.|| |-+|.++|..|.+   .|.+|.++.|.+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            578999988 5899999976655   488999998864

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.2  Score=30.23  Aligned_cols=33  Identities=6%  Similarity=0.056  Sum_probs=25.9

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCC----CEEEEEecC
Q 042455           25 VTAIVTGASSGIGAETTRVLALRG----VHVIMADRN   57 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g----~~v~~~~r~   57 (138)
                      |++.|.||||-.|+.+.+.|+++.    .++++..++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss   38 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS   38 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecc
Confidence            468889999999999999888753    267766654

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=0.13  Score=34.37  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=23.0

Q ss_pred             CEEEEeCCCCc--h--HHHHHHHHHHCCCEEEEEecCc
Q 042455           25 VTAIVTGASSG--I--GAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        25 k~~litG~~~~--i--G~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      |+++|++|+.|  +  +.+++++|.++|++|..++...
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~~   38 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD   38 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            45666654333  2  3468999999999998776543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.55  E-value=0.22  Score=28.75  Aligned_cols=84  Identities=15%  Similarity=0.077  Sum_probs=51.1

Q ss_pred             CEEEEeCCC---CchHHHHHHHHHHCCCEEEEEecCcchhHH--HHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           25 VTAIVTGAS---SGIGAETTRVLALRGVHVIMADRNMAAGRD--VKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        25 k~~litG~~---~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      |++.|.|++   +..|..+.+.|.+.|++|+.+..+.+....  ....+.+.-...++..   =....+.+..+++++.+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vv---i~vp~~~~~~~l~~~~~   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIV---FVVPPKVGLQVAKEAVE   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEE---ECSCHHHHHHHHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEE---EEeCHHHHHHHHHHHHh
Confidence            788999998   568999999999999999888654332111  1111111110112111   12357788888888776


Q ss_pred             cCCCccEEEECccc
Q 042455          100 RALPLNILINKAGI  113 (138)
Q Consensus       100 ~~~~id~lv~~ag~  113 (138)
                      .  .+..++...|.
T Consensus        79 ~--g~k~v~~~~g~   90 (116)
T d1y81a1          79 A--GFKKLWFQPGA   90 (116)
T ss_dssp             T--TCCEEEECTTS
T ss_pred             c--CCceEEeccch
Confidence            4  35566665553

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=91.51  E-value=0.58  Score=30.69  Aligned_cols=78  Identities=12%  Similarity=0.135  Sum_probs=54.3

Q ss_pred             CCCEEEEeCCCCc-hHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSG-IGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .|.++|=.|+++| +...+++.+... .+|+.++++++.++.+.+++.......++.+...|+.+.      +     .-
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~------~-----~~  152 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF------I-----SD  152 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC------C-----CS
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc------c-----cc
Confidence            5778888888654 566777765443 489999999988888888877654456788888887642      0     11


Q ss_pred             CCccEEEECcc
Q 042455          102 LPLNILINKAG  112 (138)
Q Consensus       102 ~~id~lv~~ag  112 (138)
                      ..+|.++.+..
T Consensus       153 ~~fD~V~ld~p  163 (250)
T d1yb2a1         153 QMYDAVIADIP  163 (250)
T ss_dssp             CCEEEEEECCS
T ss_pred             ceeeeeeecCC
Confidence            35788776543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.39  E-value=0.33  Score=29.33  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=27.8

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM   58 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~   58 (138)
                      .+++++|+|| |..|...|..+.++|+ .|.++.|..
T Consensus        44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3566888877 5888899999999998 588888754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.36  E-value=0.079  Score=34.84  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=26.9

Q ss_pred             CEEEEeCCCCchHHH-----HHHHHHHCCCEEEEEecCc
Q 042455           25 VTAIVTGASSGIGAE-----TTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        25 k~~litG~~~~iG~~-----~a~~l~~~g~~v~~~~r~~   58 (138)
                      |++.|+| -||.|+.     +|..|++.|.+|.+++.+.
T Consensus         2 r~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            6778887 7888874     5668888999999998875

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.23  Score=32.52  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=26.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      .++|+|+|| |-=|+..|..|.+.|++|.++-.+
T Consensus         5 ~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence            456888988 456778999999999999998654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.05  E-value=0.14  Score=32.93  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=26.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|| |--|...|..|+++|.+|.++.++.
T Consensus         5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            678888 4778889999999999999998764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=91.05  E-value=0.77  Score=28.85  Aligned_cols=59  Identities=12%  Similarity=0.045  Sum_probs=39.9

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      +.++|=.|++.|.   .+..|++.|++|..++.+++-.+.+........ ..++.++..|..+
T Consensus        16 ~~rVLDiGcG~G~---~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~-~~~i~~~~~d~~~   74 (231)
T d1vl5a_          16 NEEVLDVATGGGH---VANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-HQQVEYVQGDAEQ   74 (231)
T ss_dssp             CCEEEEETCTTCH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT-CCSEEEEECCC-C
T ss_pred             cCEEEEecccCcH---HHHHHHHhCCEEEEEECCHHHHhhhhhcccccc-ccccccccccccc
Confidence            5788888887664   345677889999999998877666555444332 3456677776654

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.14  Score=31.49  Aligned_cols=83  Identities=12%  Similarity=0.164  Sum_probs=53.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC-CCEEE-EEecCcchh--HHH-------------HHHHHhcCCCCeeEEEEecCCCHH
Q 042455           26 TAIVTGASSGIGAETTRVLALR-GVHVI-MADRNMAAG--RDV-------------KVAIVMQNPAAKVDVMELDLSSLA   88 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~-g~~v~-~~~r~~~~~--~~~-------------~~~l~~~~~~~~~~~~~~D~~~~~   88 (138)
                      ++.|.|++|-+|+++++...+. ++.++ .++|.....  +..             ...+........   +-.|++.++
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D---ViIDFs~p~   82 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFD---VFIDFTRPE   82 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCS---EEEECSCHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccc---eEEEeccHH
Confidence            5889999999999999999886 55653 344432110  000             000000000112   457999999


Q ss_pred             HHHHHHHHHHhcCCCccEEEECccc
Q 042455           89 SVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        89 ~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      .....++...+.  ++.+|+=..|.
T Consensus        83 ~~~~~~~~a~~~--~~~~ViGTTG~  105 (162)
T d1diha1          83 GTLNHLAFCRQH--GKGMVIGTTGF  105 (162)
T ss_dssp             HHHHHHHHHHHT--TCEEEECCCCC
T ss_pred             HHHHHHHHHHhc--cceeEEecCCC
Confidence            999999887664  68888888885

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.78  E-value=1.1  Score=27.66  Aligned_cols=60  Identities=20%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      +.++.+|=.|++.|.   .+..|+++|++|+.++.+++.++.......... -..+.+...|+.
T Consensus        29 ~~~grvLDiGcG~G~---~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~~~~d~~   88 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGR---NSLYLAANGYDVTAWDKNPASMANLERIKAAEG-LDNLQTDLVDLN   88 (198)
T ss_dssp             SCSCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CTTEEEEECCTT
T ss_pred             CCCCcEEEECCCCCH---HHHHHHHHhhhhccccCcHHHHHHHHHHhhhcc-ccchhhhheecc
Confidence            455688888886443   456778889999999999877766554443321 123445555544

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.65  E-value=0.15  Score=33.98  Aligned_cols=30  Identities=23%  Similarity=0.457  Sum_probs=26.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ++|+|+ |..|...|..++++|.+|+++.+.
T Consensus        19 VlVIG~-G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          19 VVVVGS-GGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecC
Confidence            788887 588899999999999999999774

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.60  E-value=0.17  Score=32.08  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      .++.||.++|.|++. -|.-+|..+++.+.++..+.|.
T Consensus        28 ~~~~gK~V~VvG~G~-Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGS-SGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSH-HHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCc-cHHHHHHHHHhhhccccccccc
Confidence            468999999999864 4788999999999987777664

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.57  E-value=0.13  Score=29.18  Aligned_cols=38  Identities=18%  Similarity=0.120  Sum_probs=29.2

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      .++.||+++|+|++ .=|..+|..|+....++++..|..
T Consensus        28 ~~f~gK~VlVVG~g-~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          28 ELFVGESVLVVGGA-SSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGTTCCEEEECSS-HHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhcCCCeEEEECCC-CCHHHHHHHHHHhcCEEEEEEecC
Confidence            35789999999986 556678889988777776666644

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.47  E-value=0.35  Score=30.18  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             HHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEEEECcccCC
Q 042455           41 TRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGICG  115 (138)
Q Consensus        41 a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~  115 (138)
                      .+.+++.+.+|+.++++++....... +   . ..++.+++.++++.+.   ++...  ..+++|+++..-|+..
T Consensus        33 s~~iL~~~~~viaiD~D~~ai~~a~~-~---~-~~~~~~~~~~f~~~~~---~l~~~--~~~~vdgIl~DLGvSs   97 (182)
T d1wg8a2          33 ARGILERGGRVIGLDQDPEAVARAKG-L---H-LPGLTVVQGNFRHLKR---HLAAL--GVERVDGILADLGVSS   97 (182)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHH-T---C-CTTEEEEESCGGGHHH---HHHHT--TCSCEEEEEEECSCCH
T ss_pred             HHHHhcccCcEEEEhhhhhHHHHHhh-c---c-ccceeEeehHHHHHHH---HHHHc--CCCccCEEEEEccCCH
Confidence            45566677799999999877655432 1   2 3568888988876444   33332  2468999999999863

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.40  E-value=0.13  Score=33.36  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=26.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      |+|+|| |--|+..|..|+++|++|.++.+++
T Consensus         3 V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           3 VAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             EEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            788888 5678899999999999999998764

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=90.22  E-value=1.2  Score=27.42  Aligned_cols=68  Identities=12%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             HHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEEEECcccC
Q 042455           42 RVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        42 ~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~  114 (138)
                      +.-.+.|-++++.+......+.+...|...  +-++..+..++. ...-.++++..++  |.+++||...-..
T Consensus        25 ~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~--Gi~a~~~Hg~~~-~~eR~~~l~~F~~--G~~~vLVaT~v~~   92 (174)
T d1c4oa2          25 RERAARGERTLVTVLTVRMAEELTSFLVEH--GIRARYLHHELD-AFKRQALIRDLRL--GHYDCLVGINLLR   92 (174)
T ss_dssp             HHHHHTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTCC-HHHHHHHHHHHHT--TSCSEEEESCCCC
T ss_pred             HHHHhcCCcEEEEEcchhHHHHHHHHHHhc--CCceEEEecccc-hHHHHHHHHHHHC--CCeEEEEeeeeee
Confidence            333456888999999888888888888776  678889999985 5556666777655  7899999876553

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.18  E-value=0.21  Score=32.31  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchh
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAG   61 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~   61 (138)
                      ++|+|| |.-|...|..|+++|.+|.++.+++...
T Consensus         7 ViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           7 NIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (253)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            788888 5777888999999999999999876543

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.89  E-value=0.37  Score=29.37  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      +++|++++++|..+.+..+.+..+...|+++.+++-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~   37 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPE   37 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEeccc
Confidence            3689999999999999999999999999999988764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.79  E-value=1.3  Score=27.04  Aligned_cols=76  Identities=9%  Similarity=0.114  Sum_probs=40.2

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHC-----CCEEEEEecCcchhHHHHHHHHh---cCCCCeeEE-EEecCCCHHHHHHHHH
Q 042455           25 VTAIVTGASSGIGAETTRVLALR-----GVHVIMADRNMAAGRDVKVAIVM---QNPAAKVDV-MELDLSSLASVRKFAS   95 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~-----g~~v~~~~r~~~~~~~~~~~l~~---~~~~~~~~~-~~~D~~~~~~~~~~~~   95 (138)
                      .++.|.||++.....+...++..     +.++++++.++++++.....+..   .. +..... ...|   ..+   .  
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d---~~e---a--   74 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK-APDIEFAATTD---PEE---A--   74 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH-CTTSEEEEESC---HHH---H--
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh-CCCcceEecCC---hhh---c--
Confidence            35777788553222333444432     23799999999887643333321   11 122222 2222   111   1  


Q ss_pred             HHHhcCCCccEEEECcccC
Q 042455           96 DFTARALPLNILINKAGIC  114 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~  114 (138)
                           ...-|++|+.+|..
T Consensus        75 -----l~~AD~Vvitag~~   88 (167)
T d1u8xx1          75 -----FTDVDFVMAHIRVG   88 (167)
T ss_dssp             -----HSSCSEEEECCCTT
T ss_pred             -----cCCCCEEEECCCcC
Confidence                 13579999999975

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.66  E-value=0.15  Score=33.55  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=28.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .|+|+||+ -.|+.+|..|.+.|.+|.++.+.++
T Consensus         4 ~V~IvGaG-p~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAG-PSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCS-HHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcC-HHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            58889885 8889999999999999999988753

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=89.55  E-value=1.7  Score=27.92  Aligned_cols=86  Identities=14%  Similarity=0.084  Sum_probs=55.5

Q ss_pred             CCCEEEEeCCCCchHHH-HHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGASSGIGAE-TTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~-~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .-|++|=+|..-|.... +|+.+ ..+.+|+.+..+++..+.....+....-..++..+..|.  .+.+..+.+. ....
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al-~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a--~~~L~~l~~~-~~~~  134 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAI-PEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA--LPVLDEMIKD-EKNH  134 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHS-CTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH--HHHHHHHHHC-GGGT
T ss_pred             CCCcEEEecchhhhhHHHHHhhC-CCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH--HHHHHHHHhc-cccC
Confidence            56889999986555433 33333 345699999999988777777776654445677777765  3344444432 2234


Q ss_pred             CCccEEEECcc
Q 042455          102 LPLNILINKAG  112 (138)
Q Consensus       102 ~~id~lv~~ag  112 (138)
                      +++|.++.-+-
T Consensus       135 ~~fD~iFiDa~  145 (227)
T d1susa1         135 GSYDFIFVDAD  145 (227)
T ss_dssp             TCBSEEEECSC
T ss_pred             CceeEEEeccc
Confidence            57888888765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=89.43  E-value=0.49  Score=29.97  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=41.6

Q ss_pred             CCCEEEEeCCCC-chHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           23 AGVTAIVTGASS-GIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        23 ~~k~~litG~~~-~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      .+.++|=.|++. .+...+++.+...+++|+.++.+++-++...+.+........+.....|+
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~  101 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI  101 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh
Confidence            466788888764 45566666655668899999999887777776665544334444444444

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=89.26  E-value=0.9  Score=29.25  Aligned_cols=60  Identities=17%  Similarity=0.046  Sum_probs=42.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      .++++|=.|++.|-   ....|++.|. +|+.++.+++.++.+...........++.++++|+.
T Consensus        24 ~~~~VLDlGCG~G~---~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~   84 (252)
T d1ri5a_          24 RGDSVLDLGCGKGG---DLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY   84 (252)
T ss_dssp             TTCEEEEETCTTTT---THHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT
T ss_pred             CcCEEEEecccCcH---HHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh
Confidence            57788888887552   2345666675 799999999888877766655433456778888874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.2  Score=33.57  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=27.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      -++|+|| |--|+.+|+.|++.|.+|.++.++..
T Consensus         3 dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            4788988 46788999999999999999977543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.02  E-value=0.2  Score=33.22  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=27.5

Q ss_pred             CCEEEEeCCCCchHHH-----HHHHHHHCCCEEEEEecCcc
Q 042455           24 GVTAIVTGASSGIGAE-----TTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        24 ~k~~litG~~~~iG~~-----~a~~l~~~g~~v~~~~r~~~   59 (138)
                      .|++.|.| -||.|+-     +|..|++.|.+|.+++-+++
T Consensus         2 Mr~Iaisg-KGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYG-KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             ccEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            35677776 7888874     57888899999999988753

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=88.99  E-value=2.2  Score=28.64  Aligned_cols=82  Identities=15%  Similarity=0.145  Sum_probs=54.0

Q ss_pred             CCCCEEEEeCC-CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGA-SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~-~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ..|+++|=.++ +|+++.++    +..+.+|+.++.++..++.......... -.++.++..|+.+      +.+.....
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~----a~g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~~i~~d~~~------~~~~~~~~  212 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHL----ALGFREVVAVDSSAEALRRAEENARLNG-LGNVRVLEANAFD------LLRRLEKE  212 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHH----HHHEEEEEEEESCHHHHHHHHHHHHHTT-CTTEEEEESCHHH------HHHHHHHT
T ss_pred             hCCCeeeccCCCCcHHHHHH----HhcCCcEEeecchHHHHHHHHHHHHHcC-CCCcceeeccHHH------HhhhhHhh
Confidence            47888886655 45555443    3345689999999988888777776542 2457788888632      22233334


Q ss_pred             CCCccEEEECcccC
Q 042455          101 ALPLNILINKAGIC  114 (138)
Q Consensus       101 ~~~id~lv~~ag~~  114 (138)
                      ..++|.+|.+.-..
T Consensus       213 ~~~fD~Vi~DpP~~  226 (318)
T d1wxxa2         213 GERFDLVVLDPPAF  226 (318)
T ss_dssp             TCCEEEEEECCCCS
T ss_pred             hcCCCEEEEcCCcc
Confidence            46799999987644

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.92  E-value=0.36  Score=32.50  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=26.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMA   59 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~   59 (138)
                      -|+|+|+||+ --|.++|+.|+++|  .+|.+..++..
T Consensus         4 ~KrVaIIGaG-~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           4 IRKIAIIGAG-PSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCEEEEECCS-HHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCeEEEECcC-HHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            3788999884 55668888888876  48999988753

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.81  E-value=1.1  Score=29.35  Aligned_cols=73  Identities=8%  Similarity=0.048  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCC-CchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGAS-SGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~-~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .|.++|-.|++ |+++..+|+    .| ++|+.++.|+...+.+....+...-..++.++..|..+..           .
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~----~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-----------~  171 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAV----YGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----------G  171 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHH----HTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----------C
T ss_pred             CccEEEECcceEcHHHHHHHH----hCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-----------c
Confidence            58889888775 556655554    34 5899999999988887777765432456888999976421           1


Q ss_pred             CCCccEEEEC
Q 042455          101 ALPLNILINK  110 (138)
Q Consensus       101 ~~~id~lv~~  110 (138)
                      -+..|.+|.+
T Consensus       172 ~~~~D~Ii~~  181 (260)
T d2frna1         172 ENIADRILMG  181 (260)
T ss_dssp             CSCEEEEEEC
T ss_pred             CCCCCEEEEC
Confidence            2457877754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.69  E-value=0.27  Score=32.59  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|| |--|++.|..|+++|.+|.++.++.
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            678887 4668899999999999999997754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.52  E-value=0.66  Score=29.80  Aligned_cols=82  Identities=15%  Similarity=0.107  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHH-CC----CEEEEEecCcchhHHHHHHHHhc----CCCCeeEEEEecCCCHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLAL-RG----VHVIMADRNMAAGRDVKVAIVMQ----NPAAKVDVMELDLSSLASVRKF   93 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~-~g----~~v~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~~D~~~~~~~~~~   93 (138)
                      .+.++|.+|+++|--.++..+++. .|    .+|+.+.++++..+...+.+...    ....++.+...|..+       
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~-------  152 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-------  152 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-------
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc-------
Confidence            578999999998887777666664 45    37999999887665554443211    112468888888742       


Q ss_pred             HHHHHhcCCCccEEEECcccC
Q 042455           94 ASDFTARALPLNILINKAGIC  114 (138)
Q Consensus        94 ~~~~~~~~~~id~lv~~ag~~  114 (138)
                         .....+++|.++.++++.
T Consensus       153 ---~~~~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         153 ---GYPPNAPYNAIHVGAAAP  170 (223)
T ss_dssp             ---CCGGGCSEEEEEECSCBS
T ss_pred             ---ccccccceeeEEEEeech
Confidence               112346799999988863

>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=0.96  Score=28.66  Aligned_cols=89  Identities=17%  Similarity=0.069  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCCchHHH-HH---HHHHHC-----CCEEEEEecCcchhHHHHHHHHhcCC------------CCeeEEEE
Q 042455           23 AGVTAIVTGASSGIGAE-TT---RVLALR-----GVHVIMADRNMAAGRDVKVAIVMQNP------------AAKVDVME   81 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~-~a---~~l~~~-----g~~v~~~~r~~~~~~~~~~~l~~~~~------------~~~~~~~~   81 (138)
                      ..-+++|.||+|-+.+- +-   .+|...     +..|+.++|.+-..++..+.+.....            -.++.++.
T Consensus        19 ~~~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y~~   98 (203)
T d1qkia1          19 DTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVA   98 (203)
T ss_dssp             CCEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHHHTTEECCB
T ss_pred             CCcEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHHHHhhcccc
Confidence            45678999999998874 22   223333     35788899976443333333221111            24578889


Q ss_pred             ecCCCHHHHHHHHHHHHhcC--CCccEEEECc
Q 042455           82 LDLSSLASVRKFASDFTARA--LPLNILINKA  111 (138)
Q Consensus        82 ~D~~~~~~~~~~~~~~~~~~--~~id~lv~~a  111 (138)
                      +|+++.++..++-+.+....  ..-+.+++-|
T Consensus        99 ~d~~~~~~~~~L~~~l~~~~~~~~~~rifYLA  130 (203)
T d1qkia1          99 GQYDDAASYQRLNSHMNALHLGSQANRLFYLA  130 (203)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTTTTTSEEEEEEC
T ss_pred             CcCCChhhHHHHHHHHHHHhcCCCcceEEEEe
Confidence            99999999888876654421  1234455544

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.43  E-value=0.28  Score=30.77  Aligned_cols=31  Identities=23%  Similarity=0.397  Sum_probs=25.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGV-HVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~   58 (138)
                      |+|+|| |--|+..|..|.++|. +|.++.++.
T Consensus         3 V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           3 VIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             EEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            778888 4677889999999997 699987754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=88.40  E-value=1.5  Score=28.61  Aligned_cols=61  Identities=15%  Similarity=0.073  Sum_probs=38.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      .+.++|=.|++.|.   ++..|+++ |++|+.++-++...+...+......-..++.++.+|+.+
T Consensus        67 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~  128 (282)
T d2o57a1          67 RQAKGLDLGAGYGG---AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  128 (282)
T ss_dssp             TTCEEEEETCTTSH---HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             CCCEEEEeCCCCcH---HHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccc
Confidence            56788888886552   33344443 789999998887766555554443223457777777654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.33  E-value=0.38  Score=28.76  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC---CEEEEEecC
Q 042455           26 TAIVTGASSGIGAETTRVLALRG---VHVIMADRN   57 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g---~~v~~~~r~   57 (138)
                      ++.|.||+|-.|+++.+.|.+++   .++..++.+
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~   38 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA   38 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence            48899999999999999997643   367666554

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.06  E-value=2.6  Score=28.31  Aligned_cols=82  Identities=12%  Similarity=0.119  Sum_probs=55.1

Q ss_pred             CCCEEEEeCCC-CchHHHHHHHHHHCCC-EEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGAS-SGIGAETTRVLALRGV-HVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~~-~~iG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++++|=.++. |+++.+.    +..|+ +|+.++.++..++...+++....-..++.++..|+.      ..+......
T Consensus       145 ~g~~VLDl~~g~G~~si~~----a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~------~~~~~~~~~  214 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHA----AIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF------EEMEKLQKK  214 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHH----HHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH------HHHHHHHHT
T ss_pred             CCCeeecccCcccchhhhh----hhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh------hhhHHHHhc
Confidence            47888866664 5555543    35576 799999999988888777765533356788887763      223333334


Q ss_pred             CCCccEEEECcccC
Q 042455          101 ALPLNILINKAGIC  114 (138)
Q Consensus       101 ~~~id~lv~~ag~~  114 (138)
                      ..++|++|.+.-..
T Consensus       215 ~~~fD~Vi~DpP~~  228 (324)
T d2as0a2         215 GEKFDIVVLDPPAF  228 (324)
T ss_dssp             TCCEEEEEECCCCS
T ss_pred             cCCCCchhcCCccc
Confidence            46899999887644

>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.97  E-value=2.5  Score=30.61  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             CCCEEEEeCC-CCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGA-SSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~-~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ++|.+.|.|| +|--|.|.+..+... +.+|+++.-...--+-+..++... .+..++.+.+| .+.++.+++++++...
T Consensus       149 ~~~~~~il~aTSGDTG~Aa~~af~~~~~i~v~vlyP~~~vS~iQ~~Qmtt~-~~~Nv~~i~v~-G~fDDcq~~vk~~f~d  226 (511)
T d1kl7a_         149 EKKQITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQMTTV-PDENVQTLSVT-GTFDNCQDIVKAIFGD  226 (511)
T ss_dssp             SCCCEEEEEECSSSHHHHHHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHC-CCTTEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred             cCceEEEEEecCCCccHHHHHHhcCCCCceeEEeccCCCCchHHHHHHhhc-CCceEEEEEec-cChHHHHHHHHHHHhh
Confidence            3466666666 567999999998854 668888876543322223334333 24578888888 4789999999998754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.97  E-value=0.31  Score=32.72  Aligned_cols=34  Identities=24%  Similarity=0.134  Sum_probs=28.1

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      --++|+|| |--|.+.|+.|.+.|.++.++.++++
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            45889998 46778899999999999999987654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.90  E-value=0.59  Score=30.46  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             CCCCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEec
Q 042455           21 DAAGVTAIVTGASSGIGAETTRVLALR-GVHVIMADR   56 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r   56 (138)
                      ++++|+++|-|- |.+|..+|+.|.++ |++|+.++-
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeeccc
Confidence            488999999988 67999999999875 888776643

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.86  E-value=2.5  Score=27.95  Aligned_cols=28  Identities=11%  Similarity=0.126  Sum_probs=20.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEE
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIM   53 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~   53 (138)
                      ..+++..+|.-|.++|..-...|.++.+
T Consensus        70 ~~vv~~ssGN~g~a~A~~a~~~g~~~~i   97 (318)
T d1v71a1          70 AGVLTFSSGNHAQAIALSAKILGIPAKI   97 (318)
T ss_dssp             HCEEECCSSHHHHHHHHHHHHTTCCEEE
T ss_pred             ceeeeeccchhhHHHHHhhcccccceee
Confidence            3477778888888888877777765433

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=87.74  E-value=0.27  Score=32.95  Aligned_cols=30  Identities=20%  Similarity=0.439  Sum_probs=25.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ++|+|+ |.-|...|..++++|.+|+++.+.
T Consensus        26 VvVIG~-G~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          26 VVIIGS-GGAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             EEEECS-SHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            788877 577889999999999999999874

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=87.72  E-value=0.042  Score=33.13  Aligned_cols=78  Identities=13%  Similarity=0.093  Sum_probs=42.9

Q ss_pred             EeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-------CCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           29 VTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-------PAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        29 itG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      ++|+ |.+|.++++.|.+.+..+.+.+|+.++++++.+......       ...++.++.+.   .+.+..++.++.   
T Consensus         4 fIG~-G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~---d~~i~~v~~~l~---   76 (153)
T d2i76a2           4 FVGT-GTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVP---DRYIKTVANHLN---   76 (153)
T ss_dssp             EESC-CHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSC---TTTHHHHHTTTC---
T ss_pred             EEeC-cHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEecc---chhhhHHHhhhc---
Confidence            4454 689999999876543334678999988888776643221       12334444443   234445554432   


Q ss_pred             CCccEEEECccc
Q 042455          102 LPLNILINKAGI  113 (138)
Q Consensus       102 ~~id~lv~~ag~  113 (138)
                      .+=.++|+.++.
T Consensus        77 ~~~~ivi~~s~~   88 (153)
T d2i76a2          77 LGDAVLVHCSGF   88 (153)
T ss_dssp             CSSCCEEECCSS
T ss_pred             ccceeeeecccc
Confidence            123567777775

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.65  E-value=2.8  Score=28.20  Aligned_cols=81  Identities=16%  Similarity=0.066  Sum_probs=53.2

Q ss_pred             CCCEEEEeCC-CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           23 AGVTAIVTGA-SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        23 ~~k~~litG~-~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      .++.+|=..+ +|+++.+    ++..|++|+.++.++..++...++..... ...++.++..|+.      ++++....+
T Consensus       132 ~~~rVLdlf~~tG~~sl~----aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~------~~l~~~~~~  201 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLV----AAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM------KFIQREERR  201 (309)
T ss_dssp             SCCEEEEETCTTCHHHHH----HHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH------HHHHHHHHH
T ss_pred             CCCeEEEecCCCcHHHHH----HHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH------HhHHHHhhc
Confidence            4677774444 5555444    34578899999999888887777665432 2346888888863      334444444


Q ss_pred             CCCccEEEECccc
Q 042455          101 ALPLNILINKAGI  113 (138)
Q Consensus       101 ~~~id~lv~~ag~  113 (138)
                      ..++|++|...-.
T Consensus       202 ~~~fD~IilDPP~  214 (309)
T d2igta1         202 GSTYDIILTDPPK  214 (309)
T ss_dssp             TCCBSEEEECCCS
T ss_pred             CCCCCEEEECCCc
Confidence            4679999987543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=0.93  Score=30.07  Aligned_cols=78  Identities=10%  Similarity=0.095  Sum_probs=53.4

Q ss_pred             CCCEEEEeCC-CCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           23 AGVTAIVTGA-SSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        23 ~~k~~litG~-~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      .+..++=.|+ +|.||.++++.+-  ..+|++++.++...+.+..+..... -.++.+++.|+.+.-         .  .
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p--~~~v~avDis~~Al~~A~~Na~~~~-~~~v~~~~~d~~~~~---------~--~  173 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERP--DCEIIAVDRMPDAVSLAQRNAQHLA-IKNIHILQSDWFSAL---------A--G  173 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCT--TSEEEEECSSHHHHHHHHHHHHHHT-CCSEEEECCSTTGGG---------T--T
T ss_pred             cccceeeeehhhhHHHHHHHhhCC--cceeeeccchhHHHhHHHHHHHHhC-cccceeeeccccccc---------C--C
Confidence            3445665565 4667777776543  4589999999988877777665542 235899999985431         1  2


Q ss_pred             CCccEEEECcccC
Q 042455          102 LPLNILINKAGIC  114 (138)
Q Consensus       102 ~~id~lv~~ag~~  114 (138)
                      .++|++|.|.-+.
T Consensus       174 ~~fDlIvsNPPYi  186 (274)
T d2b3ta1         174 QQFAMIVSNPPYI  186 (274)
T ss_dssp             CCEEEEEECCCCB
T ss_pred             CceeEEEecchhh
Confidence            4799999997654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.50  E-value=0.53  Score=27.60  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=27.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHH----HCCCEEEEEecCc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLA----LRGVHVIMADRNM   58 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~----~~g~~v~~~~r~~   58 (138)
                      ..|+++|.|| |.+|.++|..|+    +.|.+|.++.+++
T Consensus        36 ~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          36 EVKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             HCSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            3678999987 688888887775    3588999987754

>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=2  Score=30.31  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=47.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCC-CEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHh
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRG-VHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTA   99 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   99 (138)
                      ++..+++..+|.-|.+.+..+...+ .+++++.-...-......++...  +..+..+.+| .+.++.+++++++..
T Consensus       125 ~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~~vl~P~g~vS~~Q~~Qmtt~--g~nv~vi~V~-G~fDDcq~lvk~~f~  198 (428)
T d1vb3a1         125 KPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTL--GGNIETVAID-GDFDACQALVKQAFD  198 (428)
T ss_dssp             CCEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSC--CTTEEEEEEE-SCHHHHHHHHHHGGG
T ss_pred             ccceeeecCCCCcchhHHHHHhCccccceEEEecCCCCcHHHHHHHhhc--cCCceEEecC-CChhHHHHHHHHHhh
Confidence            3445556667889999999999775 57777755433222222334333  5567777777 368888888888764

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=87.11  E-value=2  Score=29.78  Aligned_cols=103  Identities=8%  Similarity=0.043  Sum_probs=58.9

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC-----CCHHHHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL-----SSLASVRKFASDF   97 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~   97 (138)
                      ....++||.|+...=..+++.|++.|..|++..-.-.......   ... .+.++..+.+|-     -+.+.++..+.+.
T Consensus       108 ~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~---~~~-~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~  183 (431)
T d1m7ya_         108 DPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDL---KWR-TGVEIVPIHCTSSNGFQITETALEEAYQEA  183 (431)
T ss_dssp             CGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHT---TTT-TCCEEEEEECCGGGTSCCCHHHHHHHHHHH
T ss_pred             CcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHH---HHh-cCceeccccccchhcccccHHHhhhhhhhh
Confidence            3346777755544445566777777877766554322222221   111 145555665543     2578888899888


Q ss_pred             HhcCCCccEEEECcccCCCC-CccCHHHHHHHhh
Q 042455           98 TARALPLNILINKAGICGTP-FMLSKDNIELHFA  130 (138)
Q Consensus        98 ~~~~~~id~lv~~ag~~~~~-~~~~~~~~~~~~~  130 (138)
                      .....++.+++.+.-- .|. ...+.+++.+.++
T Consensus       184 ~~~~~~~~~i~~~nP~-NPtG~~~s~~~l~~i~~  216 (431)
T d1m7ya_         184 EKRNLRVKGVLVTNPS-NPLGTTMTRNELYLLLS  216 (431)
T ss_dssp             HHTTCCEEEEEEESSC-TTTCCCCCHHHHHHHHH
T ss_pred             hhccCcceEEEecCcc-ccccccccccccccccc
Confidence            7776677776655432 232 2456777766654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.10  E-value=0.54  Score=28.31  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=25.6

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC---EEEEEec
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV---HVIMADR   56 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~---~v~~~~r   56 (138)
                      |-++.|.||+|-.|.++.+.|.++.+   ++..++.
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s   36 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS   36 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc
Confidence            34688999999999999999988853   4544443

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=86.99  E-value=2.3  Score=26.98  Aligned_cols=61  Identities=18%  Similarity=0.144  Sum_probs=41.0

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHH-CCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLAL-RGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~-~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      .|+.+|=+|++.|   .++..+++ .|++|+.++-++...+...+.......+.++.+...|+.+
T Consensus        33 pg~~VLDiGCG~G---~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          33 PGTRILDLGSGSG---EMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             TTCEEEEETCTTC---HHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CCCEEEEEcCCCC---HHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            4788888887655   23444554 4789999998887766655554444334568888888764

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=86.91  E-value=0.6  Score=28.95  Aligned_cols=35  Identities=31%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGV-HVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~   58 (138)
                      .-++.|.||||-.|+++.+.|.++-. ++..+..+.
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~   40 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADR   40 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECST
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccc
Confidence            34689999999999999999999854 766655443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.81  E-value=0.57  Score=30.63  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=26.0

Q ss_pred             CCEEEEeCCCCchHH-----HHHHHHHHCCCEEEEEecCcc
Q 042455           24 GVTAIVTGASSGIGA-----ETTRVLALRGVHVIMADRNMA   59 (138)
Q Consensus        24 ~k~~litG~~~~iG~-----~~a~~l~~~g~~v~~~~r~~~   59 (138)
                      -|.++++ |-||.|+     ++|..|+++|.+|.+++-++.
T Consensus         8 p~~i~~s-GKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           8 PPYLFFT-GKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             CSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CeEEEEE-CCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3555555 4677777     568888899999999987753

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.73  E-value=0.32  Score=32.58  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=26.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      -++|+|+ |.-|...|..++++|.+|+++.+.
T Consensus        21 DVvVIGa-G~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGA-GSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3788877 588899999999999999999764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.55  E-value=0.43  Score=29.83  Aligned_cols=31  Identities=16%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|| |..|.+.|..+++.|.+|.++.++.
T Consensus         5 vvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGG-GSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            578888 6889999999999999999998753

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.34  E-value=0.69  Score=30.00  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=29.1

Q ss_pred             CCCCCCEEEEeCCCCchHHHHHHHHHH-CCCEEEEEe
Q 042455           20 IDAAGVTAIVTGASSGIGAETTRVLAL-RGVHVIMAD   55 (138)
Q Consensus        20 ~~~~~k~~litG~~~~iG~~~a~~l~~-~g~~v~~~~   55 (138)
                      .++++++++|-| .|.+|..+++.|.+ .|++|+.++
T Consensus        27 ~~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          27 IDPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             CCTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             CCcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence            468899999886 58999999999986 599887665

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=86.27  E-value=2.8  Score=27.78  Aligned_cols=32  Identities=19%  Similarity=0.020  Sum_probs=22.6

Q ss_pred             CEEEEeCCCCc-h--HHHHHHHHHHCCCEEEEEec
Q 042455           25 VTAIVTGASSG-I--GAETTRVLALRGVHVIMADR   56 (138)
Q Consensus        25 k~~litG~~~~-i--G~~~a~~l~~~g~~v~~~~r   56 (138)
                      |+++.++||+| |  -.++|+.|.++|++|.+++.
T Consensus         2 ril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~   36 (391)
T d1pn3a_           2 RVLITGCGSRGDTEPLVALAARLRELGADARMCLP   36 (391)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEEEC
Confidence            44555666633 2  34689999999999988874

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=86.21  E-value=0.81  Score=26.94  Aligned_cols=86  Identities=16%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             CCCEEEEeCCC---CchHHHHHHHHHHCCCEEEEEecCcc--hhH--HHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           23 AGVTAIVTGAS---SGIGAETTRVLALRGVHVIMADRNMA--AGR--DVKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        23 ~~k~~litG~~---~~iG~~~a~~l~~~g~~v~~~~r~~~--~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      +.|++.|+|++   +..|..+.+.|.+.|++++.+.-++.  ...  .....+...  ...+..+.+ +..++.+..+++
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i--~~~iD~v~v-~~p~~~v~~~v~   88 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDL--KEPVDILDV-FRPPSALMDHLP   88 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGC--CSCCSEEEE-CSCHHHHTTTHH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhc--cCCCceEEE-eccHHHHHHHHH
Confidence            46889999998   46999999999999999888755431  110  001111111  111111111 225677777777


Q ss_pred             HHHhcCCCccEEEECccc
Q 042455           96 DFTARALPLNILINKAGI  113 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~  113 (138)
                      ++.+.  .+..++...|.
T Consensus        89 ~~~~~--g~k~i~~q~G~  104 (136)
T d1iuka_          89 EVLAL--RPGLVWLQSGI  104 (136)
T ss_dssp             HHHHH--CCSCEEECTTC
T ss_pred             HHHhh--CCCeEEEecCc
Confidence            76654  24556666664

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.85  E-value=1.9  Score=24.39  Aligned_cols=82  Identities=18%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALP  103 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  103 (138)
                      +|++||+-...-+...+...|-+.|++|..+....+..    +.+...  ...+...-..+-+.+.+ .++.+++.....
T Consensus         2 ~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al----~~l~~~--~~dlillD~~mp~~~G~-~~~~~~r~~~~~   74 (121)
T d1mvoa_           2 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEAL----KKAETE--KPDLIVLDVMLPKLDGI-EVCKQLRQQKLM   74 (121)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHH----HHHHHH--CCSEEEEESSCSSSCHH-HHHHHHHHTTCC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHH----HHHhcc--cccEEEecccccCCCCc-hhhhhhhccCCC
Confidence            47899999988888888888889999987655433332    223332  22344433333344444 345566666555


Q ss_pred             ccEEEECcc
Q 042455          104 LNILINKAG  112 (138)
Q Consensus       104 id~lv~~ag  112 (138)
                      +.+++..+.
T Consensus        75 ~~ii~lt~~   83 (121)
T d1mvoa_          75 FPILMLTAK   83 (121)
T ss_dssp             CCEEEEECT
T ss_pred             CEEEEEEee
Confidence            666665543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=85.77  E-value=2.6  Score=26.47  Aligned_cols=60  Identities=15%  Similarity=0.018  Sum_probs=40.5

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSS   86 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   86 (138)
                      .+.++|=.|++.|.   ++..|++.+.+|+.++.++.-++.+.+...... -.++.+++.|+.+
T Consensus        16 ~~~rILDiGcGtG~---~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~-~~~~~~~~~d~~~   75 (234)
T d1xxla_          16 AEHRVLDIGAGAGH---TALAFSPYVQECIGVDATKEMVEVASSFAQEKG-VENVRFQQGTAES   75 (234)
T ss_dssp             TTCEEEEESCTTSH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT-CCSEEEEECBTTB
T ss_pred             CCCEEEEeCCcCcH---HHHHHHHhCCeEEEEeCChhhhhhhhhhhcccc-ccccccccccccc
Confidence            46678888887664   344566678899999998877666655554432 2347777777653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.56  E-value=0.4  Score=32.27  Aligned_cols=29  Identities=31%  Similarity=0.431  Sum_probs=24.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEec
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADR   56 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r   56 (138)
                      ++|+|++ -=|..+|.+|++.|.+|+++-+
T Consensus         7 viIVGsG-~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           7 VVIVGSG-PIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEECcC-HHHHHHHHHHhhCCCeEEEEec
Confidence            6788774 4478899999999999999865

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=0.28  Score=30.23  Aligned_cols=34  Identities=9%  Similarity=0.092  Sum_probs=27.8

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++.++|+||+ -.|...|..+++.|.+|.++.+..
T Consensus         5 ~~dVvIIGGG-paGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSG-PAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCS-HHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECCC-HHHHHHHHHHHHcCCceEEEEeec
Confidence            4678899884 688899999999999999987643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.10  E-value=0.84  Score=29.12  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=26.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC-EEEEEecCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV-HVIMADRNM   58 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~~   58 (138)
                      .|+|+||+ --|+.+|..|.+.|. +|.++.+.+
T Consensus         3 ~V~IvGaG-~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAG-IGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcC-HHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            47888884 568889999999996 898988864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.03  E-value=0.54  Score=29.31  Aligned_cols=31  Identities=13%  Similarity=0.124  Sum_probs=26.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|+ |-.|.+.|..+++.|.+|+++.+.+
T Consensus         6 vvVIGg-GpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGG-GPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            678888 4679999999999999999998754

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.01  E-value=1  Score=27.78  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=26.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCC-EEEEEecC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGV-HVIMADRN   57 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~-~v~~~~r~   57 (138)
                      ++.|.||||-.|.++.+.|.++-. ++..+..+
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~   35 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSR   35 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeecc
Confidence            588999999999999999998754 66655444

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.75  E-value=0.69  Score=28.95  Aligned_cols=31  Identities=13%  Similarity=0.177  Sum_probs=26.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|+ |.-|+..|..+++.|.+|.++.+.+
T Consensus         8 viVIG~-GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGG-GPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            678888 4669999999999999999998754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.74  E-value=1.6  Score=30.10  Aligned_cols=33  Identities=15%  Similarity=0.344  Sum_probs=25.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHH------CCCEEEEEecCcc
Q 042455           26 TAIVTGASSGIGAETTRVLAL------RGVHVIMADRNMA   59 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~------~g~~v~~~~r~~~   59 (138)
                      =|+|+||+ --|...|..|++      .|.+|.++.+...
T Consensus        34 DViIVGgG-PAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAG-PAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCS-HHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCC-HHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            46888884 566777888876      7999999998654

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=84.61  E-value=3  Score=25.63  Aligned_cols=67  Identities=10%  Similarity=0.097  Sum_probs=50.0

Q ss_pred             HHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCccEEEECccc
Q 042455           42 RVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPLNILINKAGI  113 (138)
Q Consensus        42 ~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~  113 (138)
                      +...+.+..+++.+......+.+...|...  +..+..+..+++ .+.-..+++..++  |.+++||...-.
T Consensus        25 ~~~~~~~~~~iif~~~~~~~~~~~~~l~~~--g~~~~~~hg~~~-~~eR~~~l~~Fr~--g~~~vLVaTdv~   91 (181)
T d1t5la2          25 RERVERNERTLVTTLTKKMAEDLTDYLKEA--GIKVAYLHSEIK-TLERIEIIRDLRL--GKYDVLVGINLL   91 (181)
T ss_dssp             HHHHHTTCEEEEECSSHHHHHHHHHHHHTT--TCCEEEECSSCC-HHHHHHHHHHHHH--TSCSEEEESCCC
T ss_pred             HHHHhcCCeEEEEeehhhhhHHHHHHHHhC--CcceeEecCCcc-HHHHHHHHHHHHC--CCCCEEEehhHH
Confidence            334456778888888888888888777766  678889999986 5556677777765  689999887544

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.47  E-value=3.2  Score=28.01  Aligned_cols=94  Identities=11%  Similarity=0.044  Sum_probs=50.3

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC-----CHHHHHHHHHHHHh
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS-----SLASVRKFASDFTA   99 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~~   99 (138)
                      ..+++|.|+...-..+...|+..|..|++-.-.-..........     +.++..+.++-.     |.+.+++.+.    
T Consensus        87 ~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-----g~~~~~~~~~~~~~~~~d~~~l~~~~~----  157 (388)
T d1gdea_          87 TEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-----GGKPVEVPTYEEDEFRLNVDELKKYVT----  157 (388)
T ss_dssp             TSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-----TCEEEEEECCGGGTTCCCHHHHHHHCC----
T ss_pred             heeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHc-----CCEEEEeecccccCCCCCHHHHHHhCc----
Confidence            34666766554445556667777877766654443444433332     566666666432     4555544432    


Q ss_pred             cCCCccEEEECcccCCCCC-ccCHHHHHHHhh
Q 042455          100 RALPLNILINKAGICGTPF-MLSKDNIELHFA  130 (138)
Q Consensus       100 ~~~~id~lv~~ag~~~~~~-~~~~~~~~~~~~  130 (138)
                        .+..+++.|.-- .|.. ..+.+++.+..+
T Consensus       158 --~~~~~i~~~~P~-NPtG~~~s~~~~~~l~~  186 (388)
T d1gdea_         158 --DKTRALIINSPC-NPTGAVLTKKDLEEIAD  186 (388)
T ss_dssp             --TTEEEEEEESSC-TTTCCCCCHHHHHHHHH
T ss_pred             --cCCeEEEECCCc-CCCCCcCCHHHHHHHHH
Confidence              245555554322 2333 467777766654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=84.45  E-value=0.6  Score=27.73  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=19.9

Q ss_pred             CCCCEEEEeCCCCchHHH-HHHHHHHC-CCEEEE
Q 042455           22 AAGVTAIVTGASSGIGAE-TTRVLALR-GVHVIM   53 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~-~a~~l~~~-g~~v~~   53 (138)
                      |++|.++|+|.+ |-|+. +|+.|+++ |..++.
T Consensus         1 M~~kiI~l~G~~-GsGKsTva~~L~~~l~~~~~~   33 (178)
T d1qhxa_           1 MTTRMIILNGGS-SAGKSGIVRCLQSVLPEPWLA   33 (178)
T ss_dssp             CCCCEEEEECCT-TSSHHHHHHHHHHHSSSCEEE
T ss_pred             CCCeEEEEECCC-CCCHHHHHHHHHHHcCCCeEE
Confidence            577888888774 66676 56666654 444443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.42  E-value=0.73  Score=28.55  Aligned_cols=35  Identities=20%  Similarity=0.102  Sum_probs=27.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHH
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRD   63 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~   63 (138)
                      +.|.| .|-+|+.+|..| ++|++|+.++.+++..+.
T Consensus         3 I~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v~~   37 (196)
T d1dlja2           3 IAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKVDK   37 (196)
T ss_dssp             EEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHHHH
T ss_pred             EEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHHHH
Confidence            55566 589999999766 469999999998766544

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.32  E-value=1.7  Score=26.23  Aligned_cols=38  Identities=21%  Similarity=0.017  Sum_probs=24.0

Q ss_pred             EEEEeCCCCchHHHHHHH-HHH-C----CCEEEEEecCcchhHHH
Q 042455           26 TAIVTGASSGIGAETTRV-LAL-R----GVHVIMADRNMAAGRDV   64 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~-l~~-~----g~~v~~~~r~~~~~~~~   64 (138)
                      ++.|.||++ +|...+-. ++. .    ..++++.+.++++++..
T Consensus         2 KIaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~   45 (162)
T d1up7a1           2 RIAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIV   45 (162)
T ss_dssp             EEEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHH
T ss_pred             EEEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHH
Confidence            367788753 56554433 222 1    34899999998887643

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=84.23  E-value=2.9  Score=28.88  Aligned_cols=102  Identities=13%  Similarity=0.093  Sum_probs=56.3

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC-----CHHHHHHHHHHHH
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS-----SLASVRKFASDFT   98 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~-----~~~~~~~~~~~~~   98 (138)
                      ...++||.|+...-..++..++..|..|++..-.-.......   .. ..+.++..+.+|-.     +.+.+...++...
T Consensus       108 ~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~---~~-~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~  183 (428)
T d1iaya_         108 PERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDL---RW-RTGVQLIPIHCESSNNFKITSKAVKEAYENAQ  183 (428)
T ss_dssp             TTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHT---TT-TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHH
T ss_pred             hhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHH---HH-hcCCeEEEeecccccccccccccccchhhhhh
Confidence            345677755444334556777778877766543222222211   11 12556666666532     5677888887777


Q ss_pred             hcCCCccEEEECcccCCCC-CccCHHHHHHHhh
Q 042455           99 ARALPLNILINKAGICGTP-FMLSKDNIELHFA  130 (138)
Q Consensus        99 ~~~~~id~lv~~ag~~~~~-~~~~~~~~~~~~~  130 (138)
                      ....++..++.+.-- .|. ...+.+++++.++
T Consensus       184 ~~~~~~~~~~l~nP~-NPtG~~~s~~~~~~i~~  215 (428)
T d1iaya_         184 KSNIKVKGLILTNPS-NPLGTTLDKDTLKSVLS  215 (428)
T ss_dssp             HTTCCEEEEEEESSC-TTTCCCCCHHHHHHHHH
T ss_pred             ccCCCceEEEEccCC-Ccccccccccccchhhe
Confidence            666677766654322 232 2456666666554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.22  E-value=0.48  Score=28.25  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=24.1

Q ss_pred             CCCCCEEEEeCCCCchHHHH-HHHHHHC-CCEEEEEec
Q 042455           21 DAAGVTAIVTGASSGIGAET-TRVLALR-GVHVIMADR   56 (138)
Q Consensus        21 ~~~~k~~litG~~~~iG~~~-a~~l~~~-g~~v~~~~r   56 (138)
                      +|.|+.++|+|.. |-|+.. |+.|+++ |..++.++.
T Consensus         1 ~~~g~iI~l~G~~-GsGKSTia~~La~~lg~~~~~~~~   37 (176)
T d1zp6a1           1 DLGGNILLLSGHP-GSGKSTIAEALANLPGVPKVHFHS   37 (176)
T ss_dssp             CCTTEEEEEEECT-TSCHHHHHHHHHTCSSSCEEEECT
T ss_pred             CCCCeEEEEECCC-CCCHHHHHHHHHHHhCCCEEEecH
Confidence            4778888888875 677774 6666665 666665543

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=1.2  Score=29.68  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=22.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEE
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMA   54 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~   54 (138)
                      .++.-+|+..+|.-|.++|..-...|.+++++
T Consensus        52 ~g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~   83 (319)
T d1p5ja_          52 QGCAHFVCSSAGNAGMAAAYAARQLGVPATIV   83 (319)
T ss_dssp             TTCCEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHhhhccccceec
Confidence            34556778778888888887666667754444

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.77  E-value=0.87  Score=24.26  Aligned_cols=35  Identities=14%  Similarity=0.107  Sum_probs=29.0

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcch
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAA   60 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~   60 (138)
                      |++.|.|+ |-+|+-++..-...|.++++++.+++.
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            67889988 588888888888889999999876544

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.67  E-value=4.2  Score=26.60  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=19.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEE
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIM   53 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~   53 (138)
                      ..+++.++|.-|.++|..-...|.++.+
T Consensus        62 ~~vv~assGn~g~a~A~~a~~~g~~~~i   89 (302)
T d1fcja_          62 VELVEPTNGNTGIALAYVAAARGYKLTL   89 (302)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTCCEEE
T ss_pred             ceEEEeccccchhHHHHHHHHhccCCce
Confidence            5677777888888888766666664433

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.65  E-value=0.59  Score=30.24  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=25.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|++ .-|...|..+++.|.+|.++.++.
T Consensus         4 viVIG~G-~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGGG-SGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCeEEEEecCC
Confidence            5778875 458999999999999999998753

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.57  E-value=0.86  Score=27.98  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=24.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHC-CCEEEEE
Q 042455           26 TAIVTGASSGIGAETTRVLALR-GVHVIMA   54 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~-g~~v~~~   54 (138)
                      ++.|.||+|-.|+++.+.|.++ ..++..+
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l   32 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITAL   32 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence            6889999999999999999998 4566433

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.54  E-value=1.9  Score=28.89  Aligned_cols=39  Identities=13%  Similarity=0.166  Sum_probs=28.1

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRD   63 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~   63 (138)
                      ...|.+||.|+++|   .+++.+++..  .+|.++..+++-.+-
T Consensus        88 ~~pk~VLiiGgG~G---~~~r~~l~~~~~~~i~~VEIDp~Vi~~  128 (295)
T d1inla_          88 PNPKKVLIIGGGDG---GTLREVLKHDSVEKAILCEVDGLVIEA  128 (295)
T ss_dssp             SSCCEEEEEECTTC---HHHHHHTTSTTCSEEEEEESCHHHHHH
T ss_pred             CCCceEEEecCCch---HHHHHHHhcCCCceEEEecCCHHHHHH
Confidence            45689999999877   4566777653  479999888765443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.48  E-value=3.3  Score=25.29  Aligned_cols=77  Identities=23%  Similarity=0.172  Sum_probs=49.9

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcC-CCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQN-PAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ..++++|=.|++.|.   ++..+++.+.+|.+++.++...+.....+.... ...++.++..|+.+.  +         .
T Consensus        51 ~~~~~VLDiGcG~G~---~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~--~---------~  116 (194)
T d1dusa_          51 DKDDDILDLGCGYGV---IGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--V---------K  116 (194)
T ss_dssp             CTTCEEEEETCTTSH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--C---------T
T ss_pred             CCCCeEEEEeecCCh---hHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh--h---------c
Confidence            467888888876552   334556677799999999877766665554332 234678888887531  0         1


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                      -+.+|+++.|.-
T Consensus       117 ~~~fD~Ii~~~p  128 (194)
T d1dusa_         117 DRKYNKIITNPP  128 (194)
T ss_dssp             TSCEEEEEECCC
T ss_pred             cCCceEEEEccc
Confidence            136788887654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=83.46  E-value=1.2  Score=28.12  Aligned_cols=55  Identities=9%  Similarity=-0.024  Sum_probs=36.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      +.++++|=.|++.|.   +++.|++.|++|+.++.+++..+.+....     ...+.++..|+
T Consensus        19 ~~~~~VLDiGcG~G~---~~~~l~~~g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~   73 (225)
T d2p7ia1          19 FRPGNLLELGSFKGD---FTSRLQEHFNDITCVEASEEAISHAQGRL-----KDGITYIHSRF   73 (225)
T ss_dssp             CCSSCEEEESCTTSH---HHHHHTTTCSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCG
T ss_pred             CCCCcEEEEeCCCcH---HHHHHHHcCCeEEEEeCcHHHhhhhhccc-----ccccccccccc
Confidence            467788888887653   34667788999999999877665544332     22355555554

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.44  E-value=1.2  Score=25.92  Aligned_cols=89  Identities=13%  Similarity=0.041  Sum_probs=53.0

Q ss_pred             CCCCEEEEeCCC---CchHHHHHHHHHHCC-CEEEEEecCcchhHH--HHHHHHhcCCCCeeEEEEecCCCHHHHHHHHH
Q 042455           22 AAGVTAIVTGAS---SGIGAETTRVLALRG-VHVIMADRNMAAGRD--VKVAIVMQNPAAKVDVMELDLSSLASVRKFAS   95 (138)
Q Consensus        22 ~~~k~~litG~~---~~iG~~~a~~l~~~g-~~v~~~~r~~~~~~~--~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~   95 (138)
                      ++.|++.|+|++   +.+|..+.+.|.+.| .+|+.+....+...-  ....+.+.-....+..+   ....+.+..+++
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi---~vp~~~~~~~~~   82 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAII---VVPKRFVKDTLI   82 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEE---CSCHHHHHHHHH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEE---ecChHHhHHHHH
Confidence            567899999998   789999999987765 588888665433211  11111111001122111   235788888888


Q ss_pred             HHHhcCCCccEEEECcccC
Q 042455           96 DFTARALPLNILINKAGIC  114 (138)
Q Consensus        96 ~~~~~~~~id~lv~~ag~~  114 (138)
                      +..+. |--.+++..+|+.
T Consensus        83 ~~~~~-g~~~~vi~s~Gf~  100 (129)
T d2csua1          83 QCGEK-GVKGVVIITAGFG  100 (129)
T ss_dssp             HHHHH-TCCEEEECCCSST
T ss_pred             HHHHc-CCCEEEEeccccc
Confidence            87765 2234566666653

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=83.31  E-value=1.7  Score=24.60  Aligned_cols=82  Identities=11%  Similarity=0.037  Sum_probs=51.4

Q ss_pred             CEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           25 VTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        25 k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      -++||+-....+...+...|-+.|+.|..+....+..+    .+.... ...+...-..+-+.+. -.+++++++....+
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~----~l~~~~-~~dliilD~~lp~~~G-~el~~~ir~~~~~~   76 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQ----HRSQLS-TCDLLIVSDQLVDLSI-FSLLDIVKEQTKQP   76 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHH----TGGGGG-SCSEEEEETTCTTSCH-HHHHHHHTTSSSCC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCCeEEECCHHHHHH----HHHhcC-CCCEEEEeCCCCCCCH-HHHHHHHHhcCCCC
Confidence            35889999889999999999999999887664333222    222211 1233333333334333 35677777776677


Q ss_pred             cEEEECcc
Q 042455          105 NILINKAG  112 (138)
Q Consensus       105 d~lv~~ag  112 (138)
                      -+++..+.
T Consensus        77 pii~lt~~   84 (118)
T d2b4aa1          77 SVLILTTG   84 (118)
T ss_dssp             EEEEEESC
T ss_pred             cEEEEECC
Confidence            77777654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.24  E-value=0.78  Score=27.24  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      +++|.|| |-+|.++|..|.+ +.+|.++.+.
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CCCEEEEecc
Confidence            4677887 5899999998864 7799998774

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.12  E-value=3.1  Score=27.46  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=41.8

Q ss_pred             CCCEEEEeCCCCc-hHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCC
Q 042455           23 AGVTAIVTGASSG-IGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLS   85 (138)
Q Consensus        23 ~~k~~litG~~~~-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~   85 (138)
                      .|..+|=+|++-| +...+|+.   .|++|..++.+++..+...+.........++.+..+|..
T Consensus        62 ~G~~VLDiGCG~G~~a~~~a~~---~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~  122 (285)
T d1kpga_          62 PGMTLLDVGCGWGATMMRAVEK---YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE  122 (285)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred             CCCEEEEecCcchHHHHHHHhc---CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence            5778998888644 44444443   489999999998887776666555544566777777753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=83.07  E-value=0.73  Score=31.16  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=24.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEec
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADR   56 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r   56 (138)
                      |+|+|+ |--|..+|.+|++.|.+|.++-+
T Consensus         5 VIVVGs-G~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           5 AVVIGT-GYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEeCc-CHHHHHHHHHHHHCcCeEEEEec
Confidence            577776 56677899999999999999976

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.06  E-value=0.64  Score=29.11  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=27.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      -++|+|+ |-.|+..|..+++.|.+|.++.++.
T Consensus         7 DlvVIG~-GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           7 TLLIIGG-GPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3678886 5889999999999999999998753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=83.02  E-value=0.3  Score=29.83  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=22.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCE--EEEEec
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVH--VIMADR   56 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~--v~~~~r   56 (138)
                      .++|+|+ |-+|.++|..|.+.|.+  ++..++
T Consensus         5 ~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           5 PVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            4788886 68999999999998865  444433

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=82.74  E-value=3  Score=27.98  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=28.4

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~   66 (138)
                      ...|.+||.|+++|   .+++++++..  .+|.++..+++-.+-..+
T Consensus        76 ~~pk~VLiiG~G~G---~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~  119 (312)
T d1uira_          76 PEPKRVLIVGGGEG---ATLREVLKHPTVEKAVMVDIDGELVEVAKR  119 (312)
T ss_dssp             SCCCEEEEEECTTS---HHHHHHTTSTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCcceEEEeCCCch---HHHHHHHhcCCcceEEEecCCHHHHHHHHh
Confidence            45689999999766   3455565542  489999888765544433

>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: PdxA-like
domain: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA
species: Escherichia coli [TaxId: 562]

Probab=82.57  E-value=5.2  Score=26.94  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=26.9

Q ss_pred             CCCCEEEEe-CCCCchHHHHHHHHHHCC--CEEEEEecCcchhHHHHH
Q 042455           22 AAGVTAIVT-GASSGIGAETTRVLALRG--VHVIMADRNMAAGRDVKV   66 (138)
Q Consensus        22 ~~~k~~lit-G~~~~iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~   66 (138)
                      ++.|+++|| |--.|||-+++-++++..  .++++++ +...+++...
T Consensus         2 ~k~krIaIT~GDPaGIGPEIilK~~~~~~~~~~ivig-d~~~l~~~~~   48 (329)
T d1ptma_           2 VKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCA-DATLLTNRAA   48 (329)
T ss_dssp             CCCCEEEEECCSTTSSHHHHHHHHTTSCCSSEEEEEE-CHHHHHHHHH
T ss_pred             CCCCeEEEEcCCccHhHHHHHHHHHhhcCCCCEEEEE-CHHHHHHHHH
Confidence            445556666 667999999987766543  3565554 4444444333

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.55  E-value=0.082  Score=33.65  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=20.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCCE
Q 042455           26 TAIVTGASSGIGAETTRVLALRGVH   50 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g~~   50 (138)
                      +|+|+|| |-+|+.+|.+|+++|.+
T Consensus         2 kV~VIGa-Gi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGA-GVIGLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHTT
T ss_pred             EEEEECc-hHHHHHHHHHHHHCCCC
Confidence            4788888 68999999999999864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.44  E-value=2.7  Score=26.35  Aligned_cols=46  Identities=11%  Similarity=0.084  Sum_probs=31.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHH
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIV   69 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~   69 (138)
                      .|.++|=.|++.|.-......+...| .|+.++.+++.++.+.....
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~  101 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVR  101 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhh
Confidence            46789989998775433333344444 89999999888777665544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.37  E-value=4.2  Score=25.70  Aligned_cols=86  Identities=13%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             CCCCEEEEeCCCCchHH-HHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhc
Q 042455           22 AAGVTAIVTGASSGIGA-ETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTAR  100 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~-~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~  100 (138)
                      ..-|++|=+|..-|... .+++.+ ..+.+|+.+..+++..+.....+....-..++.....|.  .+.+..++..  ..
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al-~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda--~e~l~~~~~~--~~  132 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALAL-PADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA--LETLDELLAA--GE  132 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTS-CTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH--HHHHHHHHHT--TC
T ss_pred             cCCCeEEEEechhhHHHHHHHHhC-CCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh--hhcchhhhhh--cc
Confidence            35688998988755443 233333 235699999999888777776666554445566666664  2333333322  12


Q ss_pred             CCCccEEEECcc
Q 042455          101 ALPLNILINKAG  112 (138)
Q Consensus       101 ~~~id~lv~~ag  112 (138)
                      .+++|.++..+.
T Consensus       133 ~~~fD~ifiD~d  144 (219)
T d2avda1         133 AGTFDVAVVDAD  144 (219)
T ss_dssp             TTCEEEEEECSC
T ss_pred             cCCccEEEEeCC
Confidence            346777777654

>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Leuconostoc mesenteroides [TaxId: 1245]

Probab=82.03  E-value=2.9  Score=26.10  Aligned_cols=86  Identities=12%  Similarity=0.053  Sum_probs=45.7

Q ss_pred             EEEEeCCCCchHHH-HHH---HHHHCC-----CEEEEEecCcchhHHHHHH----HHhcCC--------CCeeEEEEecC
Q 042455           26 TAIVTGASSGIGAE-TTR---VLALRG-----VHVIMADRNMAAGRDVKVA----IVMQNP--------AAKVDVMELDL   84 (138)
Q Consensus        26 ~~litG~~~~iG~~-~a~---~l~~~g-----~~v~~~~r~~~~~~~~~~~----l~~~~~--------~~~~~~~~~D~   84 (138)
                      .++|.||+|-+.+. +-.   +|...|     .+++.++|.+-..++....    +.....        -.++...+.|+
T Consensus         7 ~lVIFGaTGDLa~RKL~PAL~~L~~~g~lp~~~~Iig~aR~~~~~e~f~~~v~~~l~~~~~~~~~~~~~~~~~~y~~~~~   86 (195)
T d1h9aa1           7 LVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDV   86 (195)
T ss_dssp             EEEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCCHHHHHHHHHHHHGGGCSCHHHHHHHHTTEEEEECCT
T ss_pred             EEEEECcccHHHHhHHHHHHHHHHHcCCCCCCCEEEEEECCcCcHHHHHHHHHHHHhhccchHhhHHHHhhccceeeEee
Confidence            34577999998874 221   222233     4788899976443332222    211111        24678888898


Q ss_pred             CCHHHHHH---HHHHHHhcCC-CccEEEECc
Q 042455           85 SSLASVRK---FASDFTARAL-PLNILINKA  111 (138)
Q Consensus        85 ~~~~~~~~---~~~~~~~~~~-~id~lv~~a  111 (138)
                      .+.++...   .+++..+..+ .-..+++-|
T Consensus        87 ~~~~~~~~l~~~l~~~~~~~~~~~~rifYLA  117 (195)
T d1h9aa1          87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMS  117 (195)
T ss_dssp             TCTTTHHHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred             ccHhhHHHHHHHHHHHHhhcCCCcceEEEEe
Confidence            87665544   4444443322 234455544

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.92  E-value=0.86  Score=29.72  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=28.3

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCc
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNM   58 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~   58 (138)
                      ...-++|+|| |--|+..|..|+++ |.+|.++.+.+
T Consensus        32 ~e~DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4456899998 57788899999874 99999998864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.78  E-value=0.45  Score=29.37  Aligned_cols=33  Identities=6%  Similarity=0.039  Sum_probs=27.2

Q ss_pred             CCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           24 GVTAIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        24 ~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ++.++|+||+ -.|...|..+++.|.+++++.+.
T Consensus         5 ~~~VvIIGgG-paGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSG-PAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCS-HHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cceEEEECCC-HHHHHHHHHHHHcCCcEEEEEee
Confidence            5678999885 68888999999999998888753

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.77  E-value=0.75  Score=30.63  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=25.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ++|+|+ |.-|+..|..+++.|.+|+++...
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEecC
Confidence            788886 567888899999999999999764

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=81.74  E-value=1.8  Score=25.84  Aligned_cols=32  Identities=6%  Similarity=0.088  Sum_probs=24.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCC----CEEEEEecC
Q 042455           26 TAIVTGASSGIGAETTRVLALRG----VHVIMADRN   57 (138)
Q Consensus        26 ~~litG~~~~iG~~~a~~l~~~g----~~v~~~~r~   57 (138)
                      ++.|.||+|-.|+++.+.|+++.    ..+..++.+
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~   37 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS   37 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc
Confidence            47899999999999999888642    366655443

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.70  E-value=0.81  Score=28.39  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=25.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|+ |..|...|..+++.|.+|.++.+..
T Consensus         6 viVIG~-GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGA-GPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEecCC
Confidence            677886 4569999999999999999998753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.63  E-value=2.6  Score=22.78  Aligned_cols=68  Identities=12%  Similarity=0.070  Sum_probs=43.4

Q ss_pred             EEEEeCCCCchHH-HHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 042455           26 TAIVTGASSGIGA-ETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARALPL  104 (138)
Q Consensus        26 ~~litG~~~~iG~-~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i  104 (138)
                      ++-++|- +|+|- ++|+.|.++|+.|...++......   +.|++.  +..+.. .-|..              .....
T Consensus         3 ~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t---~~L~~~--Gi~i~~-gh~~~--------------~i~~~   61 (89)
T d1j6ua1           3 KIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERT---AYLRKL--GIPIFV-PHSAD--------------NWYDP   61 (89)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHHHHT--TCCEES-SCCTT--------------SCCCC
T ss_pred             EEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhH---HHHHHC--CCeEEe-eeccc--------------ccCCC
Confidence            3455555 46666 589999999999999998865433   345544  443321 12221              12468


Q ss_pred             cEEEECcccC
Q 042455          105 NILINKAGIC  114 (138)
Q Consensus       105 d~lv~~ag~~  114 (138)
                      |.+|...++.
T Consensus        62 d~vV~SsAI~   71 (89)
T d1j6ua1          62 DLVIKTPAVR   71 (89)
T ss_dssp             SEEEECTTCC
T ss_pred             CEEEEecCcC
Confidence            9999999974

>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: Nitrogenase iron-molybdenum protein
domain: Nitrogenase iron-molybdenum protein, alpha chain
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.59  E-value=4  Score=29.02  Aligned_cols=80  Identities=9%  Similarity=0.007  Sum_probs=49.8

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHCCCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecCCCHHHHHHHHHHHHhcC
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALRGVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDLSSLASVRKFASDFTARA  101 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  101 (138)
                      +.||++.|.++. ....++++.|...|..++.++......+. ........+...+   -.|=.|..++.+.+.+.    
T Consensus       343 l~Gkrv~i~~~~-~~~~~l~~~l~elGmevv~~~~~~~~~~d-~~~~~~~~~~~~~---i~~d~~~~el~~~i~~~----  413 (477)
T d1m1na_         343 LEGKRVMLYIGG-LRPRHVIGAYEDLGMEVVGTGYEFAHNDD-YDRTMKEMGDSTL---LYDDVTGYEFEEFVKRI----  413 (477)
T ss_dssp             HTTCEEEECBSS-SHHHHTHHHHHTTTCEEEEEEESSCCHHH-HHTTTTTSCTTCE---EEESCBHHHHHHHHHHH----
T ss_pred             hcCCcEEEecCc-hhHHHHHHHHHHCCCEEEEEeecCCChHH-HHHHHHhcCCCcE---EecCCCHHHHHHHHHhc----
Confidence            689999988764 57788899888889988777554333222 2222222222211   22334677788887775    


Q ss_pred             CCccEEEECc
Q 042455          102 LPLNILINKA  111 (138)
Q Consensus       102 ~~id~lv~~a  111 (138)
                       ++|+++-+.
T Consensus       414 -~pDL~ig~~  422 (477)
T d1m1na_         414 -KPDLIGSGI  422 (477)
T ss_dssp             -CCSEEEECH
T ss_pred             -CCCEEEECc
Confidence             689988654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=1.1  Score=27.82  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=26.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecCc
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRNM   58 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~~   58 (138)
                      ++|+|+ |-.|...|..+++.|.+|.++.+..
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            577777 6799999999999999999997653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.13  E-value=0.67  Score=29.23  Aligned_cols=30  Identities=20%  Similarity=0.186  Sum_probs=25.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ++|+|++ .-|+..|..+++.|.+|.++...
T Consensus         6 viVIG~G-paGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGG-SGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCS-HHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCeEEEEecc
Confidence            6788885 55889999999999999999753

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.66  E-value=4.4  Score=26.78  Aligned_cols=40  Identities=10%  Similarity=0.130  Sum_probs=27.5

Q ss_pred             CCCCEEEEeCCCCchHHHHHHHHHHC-C-CEEEEEecCcchhHHH
Q 042455           22 AAGVTAIVTGASSGIGAETTRVLALR-G-VHVIMADRNMAAGRDV   64 (138)
Q Consensus        22 ~~~k~~litG~~~~iG~~~a~~l~~~-g-~~v~~~~r~~~~~~~~   64 (138)
                      ...|.+||.|+++|   .+++.+++. + .+|.++.-+++-.+-.
T Consensus        77 ~~pk~vLiiGgG~G---~~~~~~l~~~~~~~v~~vEiD~~Vv~~a  118 (285)
T d2o07a1          77 PNPRKVLIIGGGDG---GVLREVVKHPSVESVVQCEIDEDVIQVS  118 (285)
T ss_dssp             SSCCEEEEEECTTS---HHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred             cCcCeEEEeCCCch---HHHHHHHHcCCcceeeeccCCHHHHHHH
Confidence            45689999998876   456667765 3 3788888876544433

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=80.39  E-value=0.98  Score=27.17  Aligned_cols=30  Identities=17%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCCEEEEEecC
Q 042455           27 AIVTGASSGIGAETTRVLALRGVHVIMADRN   57 (138)
Q Consensus        27 ~litG~~~~iG~~~a~~l~~~g~~v~~~~r~   57 (138)
                      ++|+|| |-.|...|..+++.|.++.++.+.
T Consensus         4 ViIIGg-GpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGS-GPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCeEEEEEEe
Confidence            678887 578888899999999999998763

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.03  E-value=4.6  Score=26.43  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             CCCEEEEeCCCCchHHHHHHHHHHC-CCEEEEEecCcchhHHHHHHHHhcCCCCeeEEEEecC
Q 042455           23 AGVTAIVTGASSGIGAETTRVLALR-GVHVIMADRNMAAGRDVKVAIVMQNPAAKVDVMELDL   84 (138)
Q Consensus        23 ~~k~~litG~~~~iG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~   84 (138)
                      .|.++|=+|++.|   .++..+++. |++|..++.+++..+...+......-...+.....|.
T Consensus        52 ~g~~VLDiGCG~G---~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~  111 (280)
T d2fk8a1          52 PGMTLLDIGCGWG---TTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW  111 (280)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG
T ss_pred             CCCEEEEecCCch---HHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh
Confidence            5789999998755   234445544 8899999999888777666665553334455555554