Citrus Sinensis ID: 042474

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
MEGFFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSNVQF
ccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccccEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEccccccccEEEEEcccccEEEEEEEEEccccccEEEEEEcccccccEEcccccccEEEEccccccccEEEEEEEccccEEEEccccccccccccEEEccccc
cHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccEEEcccccEEcccEEHHHHHHHHHccccccccEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccccccccccccccccccEcccEEEEEEEEccccEEEEcccccccccEcEEEcccccc
MEGFFAFSFVALILTLLSIKINAASAAWMQAHATfyggsdasetmggacgygnlytdgygtkTAALSTVLFnngkscggcyhivcdgrkvpqwcrrgTSIIITatnfcppnydlpndnggwcnpprahfdmsqpaFESIAIYRAGIVPVLYRKvgcmrsgglrftingRDYFELVLVSnvggagevsnvwikgskmskwQVMSRNWGANWQSLTYLNAQSLSFrvqtsngrtrtaynvapsnwrfgqsfksnvqf
MEGFFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYnvapsnwrfgqsfksnvqf
MEGFFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSNVQF
***FFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRF**********
***FFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSNVQF
MEGFFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSNVQF
MEGFFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSN***
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEGFFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSNVQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query255 2.2.26 [Sep-21-2011]
Q9ZSI1255 Putative expansin-A17 OS= yes no 1.0 1.0 0.717 1e-110
Q4PR44280 Expansin-A22 OS=Oryza sat yes no 0.917 0.835 0.628 4e-91
Q4PR39263 Expansin-A29 OS=Oryza sat no no 0.988 0.958 0.607 3e-90
Q4PR43267 Expansin-A23 OS=Oryza sat no no 0.913 0.872 0.618 8e-90
Q9XHX0251 Expansin-A8 OS=Oryza sati no no 0.901 0.916 0.672 3e-89
Q4PR42278 Expansin-A24 OS=Oryza sat no no 0.933 0.856 0.600 6e-89
Q4PR52262 Expansin-A13 OS=Oryza sat no no 0.901 0.877 0.630 8e-89
Q7XWU8261 Expansin-A1 OS=Oryza sati no no 0.964 0.942 0.622 2e-87
O22874253 Expansin-A8 OS=Arabidopsi no no 0.956 0.964 0.615 3e-87
Q9LNU3252 Expansin-A11 OS=Arabidops no no 0.874 0.884 0.665 4e-87
>sp|Q9ZSI1|EXP17_ARATH Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=3 SV=1 Back     alignment and function desciption
 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/255 (71%), Positives = 210/255 (82%)

Query: 1   MEGFFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYG 60
           M   F+     +  T+  +KI++ SA W+QAHATFYGGSDAS TMGGACGYGNLYTDGY 
Sbjct: 1   MTKIFSLLVAMIFSTMFFMKISSVSAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYK 60

Query: 61  TKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGG 120
           T TAALST LFN+GKSCGGCY I+CD  KVPQWC +G SI ITATNFCPPN+   +DNGG
Sbjct: 61  TNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGG 120

Query: 121 WCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNV 180
           WCNPPR HFDM+QPAF +IA Y+AGIVP+LY+KVGC RSGG+RFTINGR+YFELVL+SNV
Sbjct: 121 WCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNV 180

Query: 181 GGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAP 240
            G GE+S VWIKGSK +KW+ MSRNWGAN+QS TYLN QSLSF+VQ S+G  + A NV P
Sbjct: 181 AGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVP 240

Query: 241 SNWRFGQSFKSNVQF 255
           SNWRFGQSFKSNV F
Sbjct: 241 SNWRFGQSFKSNVNF 255
Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)
>sp|Q4PR44|EXP22_ORYSJ Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2 Back     alignment and function description
>sp|Q4PR39|EXP29_ORYSJ Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2 Back     alignment and function description
>sp|Q4PR43|EXP23_ORYSJ Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2 Back     alignment and function description
>sp|Q9XHX0|EXPA8_ORYSJ Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1 Back     alignment and function description
>sp|Q4PR42|EXP24_ORYSJ Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2 Back     alignment and function description
>sp|Q4PR52|EXP13_ORYSJ Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2 Back     alignment and function description
>sp|Q7XWU8|EXPA1_ORYSJ Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2 Back     alignment and function description
>sp|O22874|EXPA8_ARATH Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNU3|EXP11_ARATH Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
255548179255 Alpha-expansin 1 precursor, putative [Ri 0.976 0.976 0.791 1e-116
356572866254 PREDICTED: putative expansin-A17-like [G 0.992 0.996 0.766 1e-116
255548175255 Alpha-expansin 8 precursor, putative [Ri 0.976 0.976 0.807 1e-116
225437726256 PREDICTED: putative expansin-A17 [Vitis 1.0 0.996 0.773 1e-116
356533505269 PREDICTED: putative expansin-A17-like [G 0.980 0.929 0.78 1e-116
356574046277 PREDICTED: putative expansin-A17-like [G 0.952 0.877 0.798 1e-115
357511619254 Alpha-expansin [Medicago truncatula] gi| 0.964 0.968 0.776 1e-115
363808132255 uncharacterized protein LOC100777045 pre 1.0 1.0 0.768 1e-115
224064412233 hypothetical protein POPTRDRAFT_411151 [ 0.913 1.0 0.824 1e-114
357511615239 Alpha-expansin [Medicago truncatula] gi| 0.901 0.962 0.821 1e-112
>gi|255548179|ref|XP_002515146.1| Alpha-expansin 1 precursor, putative [Ricinus communis] gi|223545626|gb|EEF47130.1| Alpha-expansin 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/249 (79%), Positives = 223/249 (89%)

Query: 7   FSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAAL 66
           +S   L+L +LSI+++ ASAAW++AHATFYGG DAS TMGGACGYGNLYTDGYGTKTAAL
Sbjct: 7   YSCFMLLLGMLSIELHVASAAWLRAHATFYGGGDASGTMGGACGYGNLYTDGYGTKTAAL 66

Query: 67  STVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPR 126
           ST LFN+GKSCGGCY IVCD  +VPQWC +GT I ITATNFCPPN++LPND+GGWCNPPR
Sbjct: 67  STALFNDGKSCGGCYQIVCDATQVPQWCLKGTYITITATNFCPPNFNLPNDDGGWCNPPR 126

Query: 127 AHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAGEV 186
            HFDMSQPAFE+IA YRAGIVP+LYRKV C RSGG+RFTING++YFELVL+SNVGGAGE+
Sbjct: 127 PHFDMSQPAFETIAKYRAGIVPILYRKVRCKRSGGIRFTINGKNYFELVLISNVGGAGEI 186

Query: 187 SNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFG 246
           SNVW+KGSK +KW+ MSRNWGANWQSL+YLN QSLSFRVQ S+GRT TA NVAPSNW FG
Sbjct: 187 SNVWVKGSKSNKWETMSRNWGANWQSLSYLNGQSLSFRVQASDGRTVTALNVAPSNWVFG 246

Query: 247 QSFKSNVQF 255
           QSFKS VQF
Sbjct: 247 QSFKSKVQF 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356572866|ref|XP_003554586.1| PREDICTED: putative expansin-A17-like [Glycine max] Back     alignment and taxonomy information
>gi|255548175|ref|XP_002515144.1| Alpha-expansin 8 precursor, putative [Ricinus communis] gi|223545624|gb|EEF47128.1| Alpha-expansin 8 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225437726|ref|XP_002273283.1| PREDICTED: putative expansin-A17 [Vitis vinifera] gi|297744056|emb|CBI37026.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533505|ref|XP_003535304.1| PREDICTED: putative expansin-A17-like [Glycine max] Back     alignment and taxonomy information
>gi|356574046|ref|XP_003555163.1| PREDICTED: putative expansin-A17-like [Glycine max] Back     alignment and taxonomy information
>gi|357511619|ref|XP_003626098.1| Alpha-expansin [Medicago truncatula] gi|355501113|gb|AES82316.1| Alpha-expansin [Medicago truncatula] Back     alignment and taxonomy information
>gi|363808132|ref|NP_001242222.1| uncharacterized protein LOC100777045 precursor [Glycine max] gi|255640656|gb|ACU20613.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224064412|ref|XP_002301463.1| hypothetical protein POPTRDRAFT_411151 [Populus trichocarpa] gi|222843189|gb|EEE80736.1| hypothetical protein POPTRDRAFT_411151 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357511615|ref|XP_003626096.1| Alpha-expansin [Medicago truncatula] gi|355501111|gb|AES82314.1| Alpha-expansin [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
TAIR|locus:2133427255 EXPA17 "expansin A17" [Arabido 0.976 0.976 0.741 2e-104
TAIR|locus:2198576252 EXPA11 "expansin 11" [Arabidop 0.949 0.960 0.627 1.4e-85
TAIR|locus:2061918253 EXPA8 "expansin A8" [Arabidops 0.972 0.980 0.611 1e-84
TAIR|locus:2007106275 EXPA1 "expansin A1" [Arabidops 0.929 0.861 0.628 3.1e-83
TAIR|locus:2200625259 EXPA10 "expansin A10" [Arabido 0.968 0.953 0.596 6.4e-83
TAIR|locus:2056670253 EXPA15 "expansin A15" [Arabido 0.952 0.960 0.608 8.2e-83
TAIR|locus:2153569255 EXPA2 "expansin A2" [Arabidops 0.952 0.952 0.594 2.5e-81
TAIR|locus:2099991260 EXPA16 "expansin A16" [Arabido 0.933 0.915 0.599 1.8e-80
TAIR|locus:2043240257 EXPA4 "expansin A4" [Arabidops 0.945 0.937 0.600 3.7e-80
TAIR|locus:2053260257 EXPA6 "expansin A6" [Arabidops 0.937 0.929 0.6 5.4e-79
TAIR|locus:2133427 EXPA17 "expansin A17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 186/251 (74%), Positives = 212/251 (84%)

Query:     7 FSF-VALIL-TLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTA 64
             FS  VA+I  T+  +KI++ SA W+QAHATFYGGSDAS TMGGACGYGNLYTDGY T TA
Sbjct:     5 FSLLVAMIFSTMFFMKISSVSAGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTA 64

Query:    65 ALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNP 124
             ALST LFN+GKSCGGCY I+CD  KVPQWC +G SI ITATNFCPPN+   +DNGGWCNP
Sbjct:    65 ALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNP 124

Query:   125 PRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGAG 184
             PR HFDM+QPAF +IA Y+AGIVP+LY+KVGC RSGG+RFTINGR+YFELVL+SNV G G
Sbjct:   125 PRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGG 184

Query:   185 EVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWR 244
             E+S VWIKGSK +KW+ MSRNWGAN+QS TYLN QSLSF+VQ S+G  + A NV PSNWR
Sbjct:   185 EISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWR 244

Query:   245 FGQSFKSNVQF 255
             FGQSFKSNV F
Sbjct:   245 FGQSFKSNVNF 255
GO:0005576 "extracellular region" evidence=ISM;IEA
GO:0009664 "plant-type cell wall organization" evidence=IEA
GO:0009826 "unidimensional cell growth" evidence=ISS;NAS
GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS
TAIR|locus:2198576 EXPA11 "expansin 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053260 EXPA6 "expansin A6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4PR44EXP22_ORYSJNo assigned EC number0.62820.91760.8357yesno
Q9ZSI1EXP17_ARATHNo assigned EC number0.71761.01.0yesno
A2Y5R6EXPA4_ORYSINo assigned EC number0.61880.92940.9634N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028201001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (256 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
PLN00193256 PLN00193, PLN00193, expansin-A; Provisional 1e-131
PLN00050247 PLN00050, PLN00050, expansin A; Provisional 1e-109
smart0083787 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like 5e-51
pfam0135782 pfam01357, Pollen_allerg_1, Pollen allergen 2e-32
pfam0333077 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like 5e-28
PLN03023247 PLN03023, PLN03023, Expansin-like B1; Provisional 2e-21
PLN03024125 PLN03024, PLN03024, Putative EG45-like domain cont 9e-06
>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional Back     alignment and domain information 
 Score =  370 bits (950), Expect = e-131
 Identities = 163/252 (64%), Positives = 196/252 (77%), Gaps = 2/252 (0%)

Query: 5   FAFSFVALILTLLSIKINAASAA-WMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKT 63
              + +      L I +NA + + W +AHATFYGGSDAS TMGGACGYGNLY+ GYGT+T
Sbjct: 6   LGLAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRT 65

Query: 64  AALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCN 123
           AALST LFN+G SCG CY I+CD +   +WC +G S+ ITATNFCPPNY LPN+NGGWCN
Sbjct: 66  AALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCN 125

Query: 124 PPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVLVSNVGGA 183
           PP  HFDM+QPA+E I IYR GIVPVL+++V C + GG+RFTINGRDYFELVL+SNVGGA
Sbjct: 126 PPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGA 185

Query: 184 GEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNW 243
           G + +V IKGSK   W  MSRNWGANWQS  YL+ QSLSF+V T++G+TR   NV P+NW
Sbjct: 186 GSIQSVSIKGSKTG-WMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANW 244

Query: 244 RFGQSFKSNVQF 255
            FGQ+F S+VQF
Sbjct: 245 GFGQTFSSSVQF 256

Length = 256
>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional Back     alignment and domain information
>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen Back     alignment and domain information
>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional Back     alignment and domain information
>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 255
PLN00193256 expansin-A; Provisional 100.0
PLN00050247 expansin A; Provisional 100.0
PLN03023247 Expansin-like B1; Provisional 100.0
PLN03024125 Putative EG45-like domain containing protein 1; Pr 99.96
smart0083787 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b 99.95
COG4305232 Endoglucanase C-terminal domain/subunit and relate 99.95
PLN00115118 pollen allergen group 3; Provisional 99.93
PF0135782 Pollen_allerg_1: Pollen allergen; InterPro: IPR007 99.9
PF0333078 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi 99.8
PF00967119 Barwin: Barwin family; InterPro: IPR001153 Barwin 99.09
PF07249119 Cerato-platanin: Cerato-platanin; InterPro: IPR010 98.22
TIGR00413208 rlpA rare lipoprotein A. This is a family of proka 98.1
COG0797233 RlpA Lipoproteins [Cell envelope biogenesis, outer 98.08
PRK10672361 rare lipoprotein A; Provisional 97.5
PF02015201 Glyco_hydro_45: Glycosyl hydrolase family 45; Inte 93.51
PF03404131 Mo-co_dimer: Mo-co oxidoreductase dimerisation dom 80.93
>PLN00193 expansin-A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-74  Score=511.57  Aligned_cols=238  Identities=67%  Similarity=1.245  Sum_probs=222.3

Q ss_pred             HHhhhhhcCCCeeEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEecCCCCCccccC
Q 042474           17 LSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRR   96 (255)
Q Consensus        17 ~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~p~~C~~   96 (255)
                      +...++.+.++|.+|+|||||++|+.++++|||||+++..++++.++||+|+++|++|++||+||||+|.....|..|.+
T Consensus        19 ~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~   98 (256)
T PLN00193         19 FINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIK   98 (256)
T ss_pred             HhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccC
Confidence            33444455678999999999999998899999999998888999999999999999999999999999964334678988


Q ss_pred             CCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhhccCCeeeeEEEEEEeccCCeeeEEEccccCeeEEE
Q 042474           97 GTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVL  176 (255)
Q Consensus        97 g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~~~G~v~i~~r~V~C~~~g~i~~~v~ss~~w~~v~  176 (255)
                      |++|+|+|||+||++|++|++|++||++++.|||||.+||.+||....|+|+|+||||+|+++|+|+|++++++||++|+
T Consensus        99 g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vl  178 (256)
T PLN00193         99 GASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVL  178 (256)
T ss_pred             CCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEE
Confidence            88999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCccceEEEEEEecCCCCeEEcccCCCceEEecCCCCCcceEEEEEecCCcEEEEccccCCCCCCCcEEecCCCC
Q 042474          177 VSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSNVQF  255 (255)
Q Consensus       177 v~n~~g~g~I~sVev~~~gs~~W~~m~r~~g~~W~~~~~~~g~pl~~RvT~~~G~~i~~~~vip~~w~~G~ty~~~vqf  255 (255)
                      |.|++|+++|++||||+++ ++|++|+|+||++|+++.++.++||+||||+.+|+++++.||||++|++|+||+++|||
T Consensus       179 v~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        179 ISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF  256 (256)
T ss_pred             EEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence            9999999999999999976 58999999999999999888777999999999999999999999999999999999998

>PLN00050 expansin A; Provisional Back     alignment and domain information
>PLN03023 Expansin-like B1; Provisional Back     alignment and domain information
>PLN03024 Putative EG45-like domain containing protein 1; Provisional Back     alignment and domain information
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Back     alignment and domain information
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00115 pollen allergen group 3; Provisional Back     alignment and domain information
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants [] Back     alignment and domain information
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures Back     alignment and domain information
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds Back     alignment and domain information
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family Back     alignment and domain information
>TIGR00413 rlpA rare lipoprotein A Back     alignment and domain information
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10672 rare lipoprotein A; Provisional Back     alignment and domain information
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
2hcz_X245 Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans 7e-22
1n10_A241 Crystal Structure Of Phl P 1, A Major Timothy Grass 3e-17
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 32/243 (13%)
Query: 28  WMQAHATFYG---GSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIV 84
           W+ A AT+YG   G+ A +  GGACG  N+    Y   TA  +  +F +GK CG CY + 
Sbjct: 19  WLTARATWYGQPNGAGAPDN-GGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVR 77
Query: 85  CDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIA---- 140
           C  ++ P+      ++ IT  N+ P                  HFD+S  AF S+A    
Sbjct: 78  C--KEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKPGL 121
Query: 141 ---IYRAGIVPVLYRKVGCMRSGGLRFTINGRD----YFELVLVSNVGGAGEVSNVWIKG 193
              I   GI+ V +R+V C    G +   +        +  VLV  V   G++  + I+ 
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181
Query: 194 SKMSKWQVMSRNWGANWQSLTYLNAQ-SLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSN 252
              ++W+ M  +WGA W+  T    +   S R+ + +G+   A +V P+NWR    + SN
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSN 241
Query: 253 VQF 255
           VQF
Sbjct: 242 VQF 244
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 2e-72
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 4e-64
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 5e-56
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 2e-29
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 5e-29
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 2e-28
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 1e-26
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245 Back     alignment and structure
 Score =  220 bits (562), Expect = 2e-72
 Identities = 71/247 (28%), Positives = 110/247 (44%), Gaps = 30/247 (12%)

Query: 23  AASAAWMQAHATFYGGSDASET--MGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGC 80
             +  W+ A AT+YG  + +     GGACG  N+    Y   TA  +  +F +GK CG C
Sbjct: 14  NYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSC 73

Query: 81  YHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIA 140
           Y + C  +  P+      ++ IT  N+ P                  HFD+S  AF S+A
Sbjct: 74  YEVRCKEK--PECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLA 117

Query: 141 -------IYRAGIVPVLYRKVGCMRSGGLRFTIN----GRDYFELVLVSNVGGAGEVSNV 189
                  I   GI+ V +R+V C    G +   +        +  VLV  V   G++  +
Sbjct: 118 KPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLM 177

Query: 190 WIKGSKMSKWQVMSRNWGANWQSLTYLN-AQSLSFRVQTSNGRTRTAYNVAPSNWRFGQS 248
            I+    ++W+ M  +WGA W+  T        S R+ + +G+   A +V P+NWR    
Sbjct: 178 EIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAV 237

Query: 249 FKSNVQF 255
           + SNVQF
Sbjct: 238 YTSNVQF 244
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100 Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108 Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96 Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
2hcz_X245 Beta-expansin 1A; domain 1 is A beta barrel and do 100.0
1n10_A241 PHL P I, pollen allergen PHL P 1; plant allergen, 100.0
3d30_A208 YOAJ, expansin like protein; peptidoglycan associa 100.0
1wc2_A181 Endoglucanase; hydrolase, cellulase, cellulose, do 100.0
3ft1_A100 PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate 99.97
2jnz_A108 PHL P 3 allergen; timothy grass pollen; NMR {Phleu 99.96
1bmw_A96 PHL P II, pollen allergen PHL P2; allergy, immunog 99.93
1bw3_A125 Barwin, basic barley SEED protein; lectin; NMR {Ho 99.7
4avr_A95 PA4485; unknown function, GRAM-negative bacteria, 99.4
3m3g_A120 EPL1 protein; fungal, plant defense, fungus, polys 98.11
2kqa_A129 Cerato-platanin; elicitor, secreted, toxin; NMR {C 98.08
3sul_A122 Cerato-platanin-like protein; double PSI beta barr 98.06
3suj_A127 Cerato-platanin 1; double PSI beta barrel, unknown 97.98
3suk_A125 Cerato-platanin-like protein; double PSI beta barr 97.93
3sum_A136 Cerato-platanin-like protein; double PSI beta barr 97.87
2eng_A210 Endoglucanase V; cellulose degradation, hydrolase 94.94
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=5.6e-66  Score=455.52  Aligned_cols=214  Identities=32%  Similarity=0.618  Sum_probs=197.7

Q ss_pred             CCCeeEEEEEEecCCCCCCC--CccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEecCCCCCccccCCCEEEE
Q 042474           25 SAAWMQAHATFYGGSDASET--MGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIII  102 (255)
Q Consensus        25 ~~~~~~g~aT~Yg~~~~~~~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~p~~C~~g~sv~v  102 (255)
                      +++|+.|+||||+++++.++  .+|||||++++..+++.++||+|+++|++|+.||+||||+|.+.   ..|.+ ++|+|
T Consensus        16 ~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~---~~C~~-~sv~V   91 (245)
T 2hcz_X           16 NGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEK---PECSG-NPVTV   91 (245)
T ss_dssp             CCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSS---SSBCS-SCEEE
T ss_pred             CCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCC---CccCC-CCEEE
Confidence            57899999999999988777  78999999988788999999999999999999999999999763   46975 58999


Q ss_pred             EEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhh-------ccCCeeeeEEEEEEeccCC--eeeEEEc--cccC
Q 042474          103 TATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAI-------YRAGIVPVLYRKVGCMRSG--GLRFTIN--GRDY  171 (255)
Q Consensus       103 ~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~-------~~~G~v~i~~r~V~C~~~g--~i~~~v~--ss~~  171 (255)
                      +|||+||+            +++.+|||||+.||++||+       ++.|+|+|+||||+|+++|  ||+|+++  +++|
T Consensus        92 ~VtD~C~C------------~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~  159 (245)
T 2hcz_X           92 YITDMNYE------------PIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPN  159 (245)
T ss_dssp             EEEEECCC------------TTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSS
T ss_pred             EEEeccCC------------CCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcc
Confidence            99999985            3357999999999999999       6899999999999999983  7999998  6899


Q ss_pred             eeEEEEEEecCccceEEEEEEecCCCCeEEcccCCCceEEecCC--CCCcceEEEEEecCCcEEEEccccCCCCCCCcEE
Q 042474          172 FELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTY--LNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSF  249 (255)
Q Consensus       172 w~~v~v~n~~g~g~I~sVev~~~gs~~W~~m~r~~g~~W~~~~~--~~g~pl~~RvT~~~G~~i~~~~vip~~w~~G~ty  249 (255)
                      |++|+|.|++|+++|++|||+++++..|++|+|+|||+|+++..  |.+ ||+||||+.+|++|++.||||++|++|+||
T Consensus       160 ~~avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~ty  238 (245)
T 2hcz_X          160 YLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVY  238 (245)
T ss_dssp             CCCEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCS-SCCEEEEETTSCEEEESCSCCSSCCTTCEE
T ss_pred             eEEEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCC-CEEEEEEEeCCcEEEEeeeecCCCCCCCEE
Confidence            99999999999999999999999877999999999999999874  777 999999999999999999999999999999


Q ss_pred             ecCCCC
Q 042474          250 KSNVQF  255 (255)
Q Consensus       250 ~~~vqf  255 (255)
                      ++++||
T Consensus       239 ~~~~qf  244 (245)
T 2hcz_X          239 TSNVQF  244 (245)
T ss_dssp             ECSCCC
T ss_pred             eCcccc
Confidence            999998
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Back     alignment and structure
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Back     alignment and structure
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Back     alignment and structure
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A Back     alignment and structure
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Back     alignment and structure
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Back     alignment and structure
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Back     alignment and structure
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens} Back     alignment and structure
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani} Back     alignment and structure
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa} Back     alignment and structure
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa} Back     alignment and structure
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa} Back     alignment and structure
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 255
d1wc2a1180 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu 2e-44
d1n10a2143 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t 1e-42
d1n10a195 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T 3e-31
d1whoa_94 b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten 2e-23
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  145 bits (367), Expect = 2e-44
 Identities = 35/170 (20%), Positives = 46/170 (27%), Gaps = 35/170 (20%)

Query: 28  WMQAHATFYGGSDASETMGGACGYGNL-----YTDGYGTKTAALSTVLFNN------GKS 76
              A  T Y  S       GACG G       +    G+  AA S + F++      G+ 
Sbjct: 14  KSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQH 68

Query: 77  CGGCYHIVCDGRK---VPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRA------ 127
           CG C  +   G          R G S     TN CP  Y     N  WCN          
Sbjct: 69  CGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIY----PNQDWCNQGSQYGGHNK 124

Query: 128 -----HFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYF 172
                H D+       +           +  V C               +
Sbjct: 125 YGYELHLDLE-NGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMY 173
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143 Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95 Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
d1n10a2143 Pollen allergen PHL P 1 N-terminal domain {Timothy 100.0
d1wc2a1180 Endoglucanase (CMCase) {Blue mussel (Mytilus eduli 100.0
d1n10a195 PHL P 1 C-terminal domain {Timothy grass (Phleum p 99.96
d1whoa_94 PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1 99.94
d1bw3a_125 Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} 98.74
d2enga_210 Endoglucanase V (Eng V) {Humicola insolens [TaxId: 94.38
d2a9da1123 Sulfite oxidase, C-terminal domain {Chicken (Gallu 80.63
d1ogpa1127 Sulfite oxidase, C-terminal domain {Mouse-ear cres 80.3
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=3.3e-37  Score=249.65  Aligned_cols=121  Identities=30%  Similarity=0.641  Sum_probs=101.8

Q ss_pred             cCCCeeEEEEEEecCCCCCCC--CccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEecCCCCCccccCCCEEE
Q 042474           24 ASAAWMQAHATFYGGSDASET--MGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSII  101 (255)
Q Consensus        24 ~~~~~~~g~aT~Yg~~~~~~~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~p~~C~~g~sv~  101 (255)
                      ..++|++|+||||+++++.++  .+|||||++++..+++.++||+|+.+|++|..||+||||+|.+   +.+|. +++|+
T Consensus        13 ~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~---~~~c~-~~sv~   88 (143)
T d1n10a2          13 YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK---PEACS-GEPVV   88 (143)
T ss_dssp             CCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS---STTBC-SCCEE
T ss_pred             cCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC---CCccc-CCCEE
Confidence            457999999999998887654  4799999998888899999999999999999999999999976   45786 45999


Q ss_pred             EEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhhc-------cCCeeeeEEEEEEeccCC
Q 042474          102 ITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIY-------RAGIVPVLYRKVGCMRSG  160 (255)
Q Consensus       102 v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~-------~~G~v~i~~r~V~C~~~g  160 (255)
                      |+|||.||+           |+ +.+|||||+.||.+||+.       +.|+|+|+||||+|+++|
T Consensus        89 V~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          89 VHITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            999999997           33 368999999999999984       679999999999999986
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Back     information, alignment and structure
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]} Back     information, alignment and structure
>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure